Query 031216
Match_columns 163
No_of_seqs 128 out of 1033
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01113 DapB_N: Dihydrodipico 100.0 8.8E-31 1.9E-35 195.0 13.2 120 36-162 1-123 (124)
2 COG0289 DapB Dihydrodipicolina 100.0 1.8E-27 3.9E-32 196.7 14.3 122 34-162 1-125 (266)
3 TIGR00036 dapB dihydrodipicoli 99.9 4.5E-24 9.7E-29 177.3 15.4 121 35-162 1-126 (266)
4 PLN02775 Probable dihydrodipic 99.9 1.8E-23 4E-28 175.2 14.3 126 30-162 6-135 (286)
5 TIGR02130 dapB_plant dihydrodi 99.9 7.6E-23 1.6E-27 170.8 13.8 116 36-162 1-124 (275)
6 PRK00048 dihydrodipicolinate r 99.9 5.6E-22 1.2E-26 163.8 14.8 116 35-162 1-116 (257)
7 PF01408 GFO_IDH_MocA: Oxidore 99.8 6E-18 1.3E-22 122.7 12.0 114 36-159 1-116 (120)
8 PRK13303 L-aspartate dehydroge 99.7 1.7E-16 3.6E-21 131.8 12.9 113 35-158 1-115 (265)
9 COG0673 MviM Predicted dehydro 99.7 7E-16 1.5E-20 129.4 11.8 117 34-160 2-122 (342)
10 PRK11579 putative oxidoreducta 99.7 1.5E-15 3.3E-20 129.4 13.9 114 35-160 4-119 (346)
11 PRK10206 putative oxidoreducta 99.6 1.2E-14 2.6E-19 124.4 11.9 115 35-160 1-119 (344)
12 COG4091 Predicted homoserine d 99.6 1.3E-14 2.7E-19 124.6 9.9 126 32-162 14-158 (438)
13 PRK13304 L-aspartate dehydroge 99.6 4.4E-14 9.5E-19 117.3 12.1 111 35-157 1-114 (265)
14 TIGR01761 thiaz-red thiazoliny 99.5 8.6E-14 1.9E-18 119.8 11.4 114 34-159 2-118 (343)
15 PRK13302 putative L-aspartate 99.5 7.7E-13 1.7E-17 110.3 12.3 111 35-158 6-118 (271)
16 PRK06270 homoserine dehydrogen 99.4 7.2E-13 1.6E-17 113.7 11.1 120 35-159 2-147 (341)
17 PRK06349 homoserine dehydrogen 99.4 1E-12 2.2E-17 115.8 11.3 113 35-158 3-125 (426)
18 KOG2741 Dimeric dihydrodiol de 99.4 2.3E-12 5E-17 110.3 12.4 121 32-159 3-126 (351)
19 TIGR01921 DAP-DH diaminopimela 99.4 2.7E-12 5.8E-17 109.8 11.9 107 35-155 3-111 (324)
20 PF03447 NAD_binding_3: Homose 99.4 1.5E-12 3.3E-17 95.0 6.6 107 43-158 1-113 (117)
21 PRK13301 putative L-aspartate 99.3 3.4E-11 7.3E-16 100.5 12.7 109 35-156 2-114 (267)
22 PRK04207 glyceraldehyde-3-phos 99.3 1.8E-11 4E-16 105.2 10.5 97 35-139 1-111 (341)
23 PRK08374 homoserine dehydrogen 99.3 3.7E-11 8E-16 103.1 11.1 124 35-163 2-150 (336)
24 TIGR03215 ac_ald_DH_ac acetald 99.2 7.4E-11 1.6E-15 99.4 11.1 97 35-140 1-98 (285)
25 PF01118 Semialdhyde_dh: Semia 99.2 1.5E-10 3.2E-15 85.3 9.9 95 37-138 1-98 (121)
26 PRK08300 acetaldehyde dehydrog 99.2 1.1E-10 2.4E-15 99.1 10.2 98 34-140 3-104 (302)
27 COG1712 Predicted dinucleotide 99.2 3.7E-10 7.9E-15 92.4 11.1 109 36-156 1-112 (255)
28 PLN02819 lysine-ketoglutarate 99.1 4.5E-10 9.7E-15 108.1 12.5 117 34-160 568-700 (1042)
29 PRK00436 argC N-acetyl-gamma-g 99.1 6E-10 1.3E-14 95.7 10.7 100 34-139 1-101 (343)
30 COG3804 Uncharacterized conser 99.0 2.2E-09 4.7E-14 90.4 10.5 118 35-161 2-129 (350)
31 PRK06392 homoserine dehydrogen 99.0 3.1E-09 6.8E-14 91.1 11.1 121 36-162 1-143 (326)
32 TIGR03855 NAD_NadX aspartate d 99.0 4.4E-09 9.5E-14 86.1 9.2 88 60-157 1-90 (229)
33 PRK06813 homoserine dehydrogen 98.8 5.4E-08 1.2E-12 84.1 11.2 125 35-163 2-150 (346)
34 TIGR01850 argC N-acetyl-gamma- 98.8 6.8E-08 1.5E-12 83.2 10.9 96 36-138 1-100 (346)
35 PF02629 CoA_binding: CoA bind 98.8 1.2E-07 2.6E-12 67.3 10.0 90 34-135 2-91 (96)
36 PRK08664 aspartate-semialdehyd 98.7 8.9E-08 1.9E-12 82.4 10.4 97 35-138 3-108 (349)
37 TIGR00978 asd_EA aspartate-sem 98.7 8.3E-08 1.8E-12 82.4 10.1 95 36-135 1-102 (341)
38 COG0460 ThrA Homoserine dehydr 98.7 1.6E-07 3.4E-12 80.8 10.6 113 34-157 2-133 (333)
39 PLN02968 Probable N-acetyl-gam 98.6 2.5E-07 5.4E-12 80.9 10.5 106 24-137 26-134 (381)
40 PRK14874 aspartate-semialdehyd 98.6 7.8E-07 1.7E-11 76.2 13.0 88 35-134 1-91 (334)
41 PTZ00187 succinyl-CoA syntheta 98.6 1.3E-06 2.9E-11 74.7 13.1 115 34-160 28-144 (317)
42 PRK05671 aspartate-semialdehyd 98.6 4.3E-07 9.4E-12 78.2 10.1 90 33-134 2-94 (336)
43 COG0002 ArgC Acetylglutamate s 98.6 3.1E-07 6.8E-12 79.2 9.1 95 34-134 1-98 (349)
44 PRK11863 N-acetyl-gamma-glutam 98.6 8E-07 1.7E-11 76.0 11.5 92 34-149 1-106 (313)
45 PF03446 NAD_binding_2: NAD bi 98.6 7.7E-07 1.7E-11 68.5 10.4 109 35-159 1-115 (163)
46 smart00846 Gp_dh_N Glyceraldeh 98.6 4.9E-07 1.1E-11 69.5 9.2 99 36-139 1-121 (149)
47 PLN02383 aspartate semialdehyd 98.6 1.6E-06 3.4E-11 74.9 13.1 90 32-134 4-97 (344)
48 COG0074 SucD Succinyl-CoA synt 98.6 6.8E-07 1.5E-11 75.2 10.3 114 34-161 7-121 (293)
49 PF00044 Gp_dh_N: Glyceraldehy 98.6 2.1E-07 4.6E-12 71.8 6.8 100 36-139 1-122 (151)
50 TIGR01546 GAPDH-II_archae glyc 98.5 2.6E-07 5.6E-12 79.6 7.9 94 38-138 1-108 (333)
51 PRK05678 succinyl-CoA syntheta 98.5 2.9E-06 6.3E-11 71.9 13.5 114 34-161 7-121 (291)
52 PRK08040 putative semialdehyde 98.5 6.6E-07 1.4E-11 77.1 9.6 89 34-134 3-94 (336)
53 TIGR01019 sucCoAalpha succinyl 98.5 3.2E-06 6.9E-11 71.5 13.5 114 34-161 5-119 (286)
54 COG0057 GapA Glyceraldehyde-3- 98.5 5.9E-07 1.3E-11 77.1 8.8 102 35-140 1-125 (335)
55 smart00859 Semialdhyde_dh Semi 98.5 9.4E-07 2E-11 64.6 8.4 92 37-135 1-97 (122)
56 PRK09436 thrA bifunctional asp 98.5 1.4E-06 2.9E-11 82.8 11.1 123 34-159 464-603 (819)
57 PLN00125 Succinyl-CoA ligase [ 98.4 5.5E-06 1.2E-10 70.5 13.4 113 35-161 12-126 (300)
58 TIGR01851 argC_other N-acetyl- 98.4 2.4E-06 5.1E-11 73.0 11.1 75 36-134 2-77 (310)
59 PLN02700 homoserine dehydrogen 98.4 1.5E-06 3.3E-11 76.0 9.9 124 35-163 3-167 (377)
60 PRK09466 metL bifunctional asp 98.4 2.4E-06 5.1E-11 81.1 11.0 127 34-163 457-603 (810)
61 PF13380 CoA_binding_2: CoA bi 98.4 3.3E-06 7.1E-11 62.1 9.3 103 37-161 2-107 (116)
62 COG1748 LYS9 Saccharopine dehy 98.4 2.1E-06 4.5E-11 75.4 9.2 115 35-159 1-119 (389)
63 PRK05472 redox-sensing transcr 98.3 3.8E-06 8.3E-11 67.5 9.4 95 34-138 83-179 (213)
64 PRK07634 pyrroline-5-carboxyla 98.3 9.4E-06 2E-10 65.6 11.6 103 35-148 4-110 (245)
65 PRK06728 aspartate-semialdehyd 98.3 4.9E-06 1.1E-10 72.1 10.3 88 34-134 4-96 (347)
66 TIGR01296 asd_B aspartate-semi 98.3 9.7E-06 2.1E-10 69.8 11.7 86 37-134 1-89 (339)
67 PF03435 Saccharop_dh: Sacchar 98.3 5.6E-06 1.2E-10 71.5 9.8 110 38-159 1-118 (386)
68 PLN02358 glyceraldehyde-3-phos 98.3 5.1E-06 1.1E-10 71.7 8.8 96 35-135 5-124 (338)
69 PF03807 F420_oxidored: NADP o 98.2 1.3E-05 2.9E-10 55.8 9.1 87 37-135 1-92 (96)
70 PRK08955 glyceraldehyde-3-phos 98.2 5.9E-06 1.3E-10 71.3 8.6 94 35-135 2-117 (334)
71 PRK11880 pyrroline-5-carboxyla 98.2 1.7E-05 3.6E-10 65.1 10.8 102 34-147 1-104 (267)
72 PRK11559 garR tartronate semia 98.2 1.8E-05 3.8E-10 66.0 10.9 106 35-156 2-114 (296)
73 PRK06598 aspartate-semialdehyd 98.1 1.8E-05 3.9E-10 69.2 9.6 85 35-132 1-91 (369)
74 PRK12490 6-phosphogluconate de 98.1 5.1E-05 1.1E-09 63.8 11.9 111 36-159 1-115 (299)
75 PRK05447 1-deoxy-D-xylulose 5- 98.1 1.8E-05 3.8E-10 69.5 9.3 118 35-156 1-141 (385)
76 PTZ00023 glyceraldehyde-3-phos 98.1 1.7E-05 3.7E-10 68.5 8.6 98 35-137 2-121 (337)
77 PRK14618 NAD(P)H-dependent gly 98.1 2.3E-05 5E-10 66.4 9.2 109 35-153 4-122 (328)
78 PRK06476 pyrroline-5-carboxyla 98.1 3.6E-05 7.8E-10 63.1 10.0 101 36-149 1-105 (258)
79 COG0136 Asd Aspartate-semialde 98.1 2.6E-05 5.7E-10 67.2 9.1 95 35-138 1-98 (334)
80 PRK09599 6-phosphogluconate de 98.1 8.4E-05 1.8E-09 62.5 12.1 111 36-159 1-115 (301)
81 TIGR01532 E4PD_g-proteo D-eryt 98.0 2.2E-05 4.8E-10 67.4 8.2 97 37-138 1-122 (325)
82 PLN02688 pyrroline-5-carboxyla 98.0 6.9E-05 1.5E-09 61.4 10.6 99 36-148 1-106 (266)
83 TIGR03450 mycothiol_INO1 inosi 98.0 9E-05 1.9E-09 64.0 11.4 119 36-161 1-180 (351)
84 PRK06928 pyrroline-5-carboxyla 98.0 0.0001 2.2E-09 61.5 11.5 110 35-159 1-117 (277)
85 TIGR02717 AcCoA-syn-alpha acet 98.0 9.6E-05 2.1E-09 65.8 11.8 108 35-161 7-126 (447)
86 COG2344 AT-rich DNA-binding pr 97.9 2.5E-05 5.3E-10 62.7 6.4 103 18-135 67-175 (211)
87 PRK07729 glyceraldehyde-3-phos 97.9 5.1E-05 1.1E-09 65.7 8.7 98 35-137 2-120 (343)
88 PF10727 Rossmann-like: Rossma 97.9 1.2E-05 2.6E-10 60.4 4.2 96 34-144 9-111 (127)
89 PRK07679 pyrroline-5-carboxyla 97.9 0.0002 4.4E-09 59.4 12.1 111 36-160 4-120 (279)
90 PLN03096 glyceraldehyde-3-phos 97.9 4.3E-05 9.4E-10 67.3 8.3 99 34-137 59-181 (395)
91 cd01076 NAD_bind_1_Glu_DH NAD( 97.9 6E-05 1.3E-09 61.6 8.6 114 34-161 30-157 (227)
92 PLN02237 glyceraldehyde-3-phos 97.9 4.5E-05 9.6E-10 68.0 8.2 99 34-137 74-196 (442)
93 PRK15425 gapA glyceraldehyde-3 97.9 7E-05 1.5E-09 64.6 8.8 98 35-137 2-120 (331)
94 PRK07403 glyceraldehyde-3-phos 97.9 4.8E-05 1E-09 65.7 7.5 98 35-137 1-121 (337)
95 PRK15461 NADH-dependent gamma- 97.9 0.00021 4.5E-09 60.1 11.0 108 35-158 1-115 (296)
96 PRK13535 erythrose 4-phosphate 97.9 5.2E-05 1.1E-09 65.5 7.4 98 35-137 1-122 (336)
97 PRK07680 late competence prote 97.8 0.00018 3.8E-09 59.6 10.2 101 36-147 1-106 (273)
98 TIGR00872 gnd_rel 6-phosphoglu 97.8 0.00033 7.2E-09 58.9 11.8 109 36-157 1-112 (298)
99 TIGR01505 tartro_sem_red 2-hyd 97.8 0.00029 6.2E-09 58.7 11.1 104 37-156 1-111 (291)
100 COG0345 ProC Pyrroline-5-carbo 97.8 0.00022 4.9E-09 59.8 10.3 103 35-149 1-107 (266)
101 COG1023 Gnd Predicted 6-phosph 97.8 9.7E-05 2.1E-09 61.5 7.9 95 36-139 1-122 (300)
102 PRK15059 tartronate semialdehy 97.8 0.00035 7.6E-09 58.8 10.9 107 36-159 1-114 (292)
103 PRK00094 gpsA NAD(P)H-dependen 97.7 0.0002 4.3E-09 59.9 9.0 98 35-143 1-111 (325)
104 PTZ00431 pyrroline carboxylate 97.7 0.00057 1.2E-08 56.4 11.1 94 36-149 4-102 (260)
105 COG4693 PchG Oxidoreductase (N 97.7 0.00012 2.7E-09 62.0 6.9 111 35-159 4-119 (361)
106 PF07755 DUF1611: Protein of u 97.7 9.4E-05 2E-09 63.0 6.3 83 67-158 1-89 (301)
107 COG3367 Uncharacterized conser 97.7 0.00013 2.9E-09 62.6 6.8 103 48-157 15-123 (339)
108 COG2910 Putative NADH-flavin r 97.7 0.00044 9.5E-09 55.6 9.3 34 36-70 1-34 (211)
109 PTZ00434 cytosolic glyceraldeh 97.7 0.00025 5.3E-09 61.8 8.5 99 35-138 3-137 (361)
110 PRK12491 pyrroline-5-carboxyla 97.6 0.00062 1.3E-08 56.8 10.6 100 36-148 3-108 (272)
111 PRK08618 ornithine cyclodeamin 97.6 0.00015 3.2E-09 61.9 6.6 91 36-137 128-222 (325)
112 PF01210 NAD_Gly3P_dh_N: NAD-d 97.6 0.00013 2.8E-09 55.9 5.6 95 37-140 1-106 (157)
113 PLN02712 arogenate dehydrogena 97.6 0.0012 2.7E-08 61.7 12.9 104 33-152 50-157 (667)
114 PLN02272 glyceraldehyde-3-phos 97.6 0.00028 6.1E-09 62.6 8.2 99 35-138 85-207 (421)
115 cd05211 NAD_bind_Glu_Leu_Phe_V 97.6 0.00059 1.3E-08 55.4 9.2 114 34-161 22-148 (217)
116 PF05368 NmrA: NmrA-like famil 97.6 0.00034 7.4E-09 55.8 7.6 88 38-137 1-101 (233)
117 TIGR00715 precor6x_red precorr 97.5 0.00036 7.9E-09 58.1 7.8 87 36-134 1-96 (256)
118 PLN02256 arogenate dehydrogena 97.5 0.0018 3.9E-08 55.1 11.9 78 34-126 35-112 (304)
119 PLN02712 arogenate dehydrogena 97.5 0.0018 4E-08 60.5 12.5 103 34-151 368-473 (667)
120 TIGR01692 HIBADH 3-hydroxyisob 97.5 0.0014 2.9E-08 54.8 10.3 104 40-159 1-111 (288)
121 PRK09414 glutamate dehydrogena 97.4 0.0015 3.2E-08 58.5 10.3 117 34-161 231-365 (445)
122 PRK14619 NAD(P)H-dependent gly 97.4 0.0016 3.4E-08 54.9 9.9 80 36-144 5-89 (308)
123 PRK08655 prephenate dehydrogen 97.4 0.0029 6.3E-08 56.3 12.0 104 36-153 1-107 (437)
124 PRK14620 NAD(P)H-dependent gly 97.4 0.0028 6.1E-08 53.5 11.4 99 36-142 1-111 (326)
125 PF13460 NAD_binding_10: NADH( 97.4 0.00072 1.5E-08 51.6 6.9 83 38-134 1-93 (183)
126 COG2084 MmsB 3-hydroxyisobutyr 97.4 0.0023 5E-08 54.2 10.5 109 36-159 1-116 (286)
127 PLN02696 1-deoxy-D-xylulose-5- 97.4 0.0025 5.5E-08 57.1 11.1 119 34-156 56-199 (454)
128 PLN02350 phosphogluconate dehy 97.4 0.0027 5.9E-08 57.5 11.5 117 34-160 5-129 (493)
129 PRK07502 cyclohexadienyl dehyd 97.3 0.0053 1.2E-07 51.6 12.1 101 35-151 6-113 (307)
130 cd01065 NAD_bind_Shikimate_DH 97.3 0.00089 1.9E-08 50.1 6.5 109 34-158 18-134 (155)
131 PRK08289 glyceraldehyde-3-phos 97.3 0.0016 3.5E-08 58.6 9.1 35 33-68 125-163 (477)
132 TIGR03026 NDP-sugDHase nucleot 97.3 0.0041 8.9E-08 54.5 11.3 68 36-114 1-84 (411)
133 PF04321 RmlD_sub_bind: RmlD s 97.3 0.0012 2.5E-08 55.2 7.6 79 36-134 1-97 (286)
134 KOG4354 N-acetyl-gamma-glutamy 97.3 0.00098 2.1E-08 55.8 6.9 100 29-136 13-117 (340)
135 TIGR00873 gnd 6-phosphoglucona 97.3 0.0035 7.7E-08 56.3 11.0 114 37-159 1-119 (467)
136 PTZ00345 glycerol-3-phosphate 97.2 0.0032 6.9E-08 55.0 10.4 104 34-144 10-136 (365)
137 PRK06046 alanine dehydrogenase 97.2 0.00047 1E-08 58.9 4.9 90 35-136 129-223 (326)
138 PTZ00142 6-phosphogluconate de 97.2 0.003 6.5E-08 56.9 10.3 116 35-159 1-122 (470)
139 COG1810 Uncharacterized protei 97.2 0.0073 1.6E-07 49.4 11.5 108 35-160 1-110 (224)
140 TIGR01534 GAPDH-I glyceraldehy 97.2 0.0016 3.4E-08 56.2 8.1 96 37-137 1-121 (327)
141 CHL00194 ycf39 Ycf39; Provisio 97.2 0.0019 4.2E-08 54.1 8.2 33 36-69 1-33 (317)
142 KOG1255 Succinyl-CoA synthetas 97.2 0.0023 5E-08 53.4 8.3 104 34-151 37-141 (329)
143 PTZ00353 glycosomal glyceralde 97.2 0.0018 4E-08 56.1 7.9 33 35-68 2-34 (342)
144 PRK07417 arogenate dehydrogena 97.1 0.0045 9.7E-08 51.5 9.7 99 36-150 1-103 (279)
145 TIGR02371 ala_DH_arch alanine 97.1 0.00081 1.8E-08 57.5 5.4 92 35-137 128-223 (325)
146 KOG0409 Predicted dehydrogenas 97.1 0.0053 1.1E-07 52.6 10.0 118 24-157 25-149 (327)
147 PRK08223 hypothetical protein; 97.1 0.0069 1.5E-07 51.4 10.6 96 35-138 27-152 (287)
148 PRK05479 ketol-acid reductoiso 97.1 0.0058 1.3E-07 52.8 10.3 94 35-144 17-114 (330)
149 KOG1502 Flavonol reductase/cin 97.1 0.0049 1.1E-07 53.2 9.7 95 34-135 5-126 (327)
150 PF03721 UDPG_MGDP_dh_N: UDP-g 97.1 0.0026 5.6E-08 50.3 7.4 108 36-152 1-139 (185)
151 TIGR03376 glycerol3P_DH glycer 97.1 0.00098 2.1E-08 57.7 5.2 99 37-143 1-122 (342)
152 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.0048 1E-07 48.2 8.6 93 37-137 1-121 (174)
153 TIGR00465 ilvC ketol-acid redu 97.0 0.0035 7.5E-08 53.7 8.3 94 36-145 4-101 (314)
154 cd05313 NAD_bind_2_Glu_DH NAD( 97.0 0.011 2.3E-07 49.4 10.9 115 34-160 37-174 (254)
155 TIGR01915 npdG NADPH-dependent 97.0 0.01 2.3E-07 47.6 10.6 80 36-125 1-87 (219)
156 COG1091 RfbD dTDP-4-dehydrorha 97.0 0.0027 5.8E-08 53.7 7.4 78 36-134 1-96 (281)
157 PLN02858 fructose-bisphosphate 97.0 0.0094 2E-07 60.0 12.3 109 34-158 323-440 (1378)
158 PRK05476 S-adenosyl-L-homocyst 97.0 0.0048 1E-07 55.0 9.3 110 27-152 204-314 (425)
159 PRK11908 NAD-dependent epimera 97.0 0.0037 8E-08 52.8 8.3 33 35-67 1-33 (347)
160 TIGR00936 ahcY adenosylhomocys 97.0 0.0075 1.6E-07 53.4 10.4 114 25-154 185-299 (406)
161 PRK12475 thiamine/molybdopteri 97.0 0.0063 1.4E-07 52.5 9.6 96 35-138 24-149 (338)
162 PLN02858 fructose-bisphosphate 97.0 0.01 2.3E-07 59.7 12.2 105 36-156 5-116 (1378)
163 PRK06130 3-hydroxybutyryl-CoA 97.0 0.006 1.3E-07 51.2 9.1 100 35-143 4-121 (311)
164 PRK08507 prephenate dehydrogen 97.0 0.014 2.9E-07 48.4 11.1 84 36-136 1-89 (275)
165 PRK07340 ornithine cyclodeamin 96.9 0.0021 4.5E-08 54.5 6.0 92 35-137 125-218 (304)
166 TIGR00243 Dxr 1-deoxy-D-xylulo 96.9 0.0085 1.8E-07 52.8 9.7 103 35-138 1-125 (389)
167 PRK08605 D-lactate dehydrogena 96.9 0.0061 1.3E-07 52.3 8.7 102 35-154 146-252 (332)
168 COG0240 GpsA Glycerol-3-phosph 96.9 0.0086 1.9E-07 51.7 9.5 111 35-154 1-122 (329)
169 TIGR02355 moeB molybdopterin s 96.9 0.0093 2E-07 49.0 9.5 96 35-138 24-147 (240)
170 COG1052 LdhA Lactate dehydroge 96.9 0.014 3E-07 50.3 10.7 111 11-138 117-235 (324)
171 PF00208 ELFV_dehydrog: Glutam 96.8 0.0085 1.8E-07 49.5 8.8 116 34-160 31-167 (244)
172 PRK11150 rfaD ADP-L-glycero-D- 96.8 0.008 1.7E-07 49.7 8.7 32 38-70 2-33 (308)
173 PLN02427 UDP-apiose/xylose syn 96.8 0.0074 1.6E-07 51.8 8.8 36 32-67 11-46 (386)
174 PRK12439 NAD(P)H-dependent gly 96.8 0.0081 1.7E-07 51.5 8.9 101 33-142 5-116 (341)
175 TIGR01745 asd_gamma aspartate- 96.8 0.0074 1.6E-07 52.8 8.5 84 36-132 1-90 (366)
176 PRK06545 prephenate dehydrogen 96.8 0.03 6.4E-07 48.4 12.1 102 37-151 2-108 (359)
177 COG1832 Predicted CoA-binding 96.8 0.017 3.7E-07 44.1 9.2 94 36-146 17-113 (140)
178 PLN03139 formate dehydrogenase 96.8 0.01 2.2E-07 52.3 9.3 66 34-114 198-263 (386)
179 PLN02477 glutamate dehydrogena 96.8 0.018 3.9E-07 51.2 10.8 112 34-160 205-331 (410)
180 cd01075 NAD_bind_Leu_Phe_Val_D 96.8 0.0083 1.8E-07 47.9 8.0 105 35-160 28-136 (200)
181 TIGR01214 rmlD dTDP-4-dehydror 96.8 0.0095 2.1E-07 48.5 8.6 58 37-114 1-58 (287)
182 PRK05808 3-hydroxybutyryl-CoA 96.7 0.012 2.6E-07 48.8 9.1 102 35-146 3-127 (282)
183 PRK15057 UDP-glucose 6-dehydro 96.7 0.029 6.2E-07 49.3 11.8 30 36-69 1-30 (388)
184 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.0072 1.6E-07 51.3 7.8 81 34-127 177-259 (311)
185 COG2099 CobK Precorrin-6x redu 96.7 0.034 7.4E-07 46.4 11.5 120 34-160 1-134 (257)
186 PLN00016 RNA-binding protein; 96.7 0.01 2.2E-07 51.0 8.8 95 34-134 51-161 (378)
187 PRK07819 3-hydroxybutyryl-CoA 96.7 0.018 3.9E-07 48.3 10.1 102 35-147 5-131 (286)
188 TIGR03649 ergot_EASG ergot alk 96.7 0.015 3.2E-07 47.6 9.3 94 37-135 1-101 (285)
189 PRK06141 ornithine cyclodeamin 96.7 0.0029 6.2E-08 53.8 5.1 90 35-135 125-217 (314)
190 PRK08644 thiamine biosynthesis 96.7 0.0092 2E-07 48.1 7.7 95 35-137 28-150 (212)
191 PRK07531 bifunctional 3-hydrox 96.7 0.012 2.7E-07 53.0 9.3 101 36-145 5-124 (495)
192 PTZ00079 NADP-specific glutama 96.7 0.038 8.2E-07 49.7 12.2 116 34-161 236-374 (454)
193 COG1064 AdhP Zn-dependent alco 96.7 0.016 3.4E-07 50.3 9.5 92 36-139 168-262 (339)
194 KOG0455 Homoserine dehydrogena 96.6 0.024 5.2E-07 47.9 10.1 122 34-158 2-143 (364)
195 PRK07574 formate dehydrogenase 96.6 0.024 5.2E-07 49.9 10.6 104 35-154 192-300 (385)
196 PF02826 2-Hacid_dh_C: D-isome 96.6 0.0027 5.9E-08 49.5 4.2 86 34-135 35-125 (178)
197 PRK08818 prephenate dehydrogen 96.6 0.02 4.4E-07 50.1 10.1 70 35-128 4-73 (370)
198 PF00899 ThiF: ThiF family; I 96.6 0.014 3E-07 43.2 7.9 96 35-138 2-125 (135)
199 PF02670 DXP_reductoisom: 1-de 96.6 0.016 3.5E-07 43.7 8.2 97 38-135 1-119 (129)
200 PLN02778 3,5-epimerase/4-reduc 96.6 0.025 5.3E-07 47.3 10.1 34 31-65 5-38 (298)
201 PRK06436 glycerate dehydrogena 96.6 0.018 3.9E-07 49.0 9.3 117 16-155 104-226 (303)
202 PRK08328 hypothetical protein; 96.6 0.024 5.3E-07 46.2 9.8 95 34-138 26-151 (231)
203 PRK15182 Vi polysaccharide bio 96.6 0.018 3.9E-07 51.1 9.7 32 34-69 5-36 (425)
204 PLN02166 dTDP-glucose 4,6-dehy 96.6 0.016 3.4E-07 51.5 9.2 91 35-136 120-232 (436)
205 PRK09987 dTDP-4-dehydrorhamnos 96.6 0.017 3.6E-07 48.1 8.9 86 36-138 1-104 (299)
206 PRK07688 thiamine/molybdopteri 96.6 0.012 2.7E-07 50.7 8.3 96 35-138 24-149 (339)
207 PRK08293 3-hydroxybutyryl-CoA 96.6 0.013 2.8E-07 48.8 8.2 100 35-144 3-127 (287)
208 PRK07066 3-hydroxybutyryl-CoA 96.6 0.019 4.1E-07 49.3 9.3 73 33-114 5-91 (321)
209 TIGR02356 adenyl_thiF thiazole 96.5 0.025 5.5E-07 45.1 9.3 95 35-137 21-143 (202)
210 PLN02695 GDP-D-mannose-3',5'-e 96.5 0.025 5.4E-07 48.7 9.8 37 31-68 17-53 (370)
211 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.008 1.7E-07 47.2 6.1 98 37-144 1-121 (180)
212 PF01488 Shikimate_DH: Shikima 96.5 0.0046 9.9E-08 46.2 4.5 73 34-115 11-84 (135)
213 PLN02353 probable UDP-glucose 96.5 0.041 8.8E-07 49.7 11.4 108 35-150 1-143 (473)
214 PRK05690 molybdopterin biosynt 96.5 0.024 5.3E-07 46.6 9.2 97 34-138 31-155 (245)
215 PRK14806 bifunctional cyclohex 96.5 0.049 1.1E-06 51.0 12.2 103 36-152 4-111 (735)
216 cd01492 Aos1_SUMO Ubiquitin ac 96.5 0.029 6.4E-07 44.7 9.3 96 35-138 21-143 (197)
217 COG4569 MhpF Acetaldehyde dehy 96.5 0.019 4.1E-07 47.2 8.2 97 34-138 3-103 (310)
218 KOG2742 Predicted oxidoreducta 96.4 0.0027 5.9E-08 55.0 3.3 108 35-154 3-111 (367)
219 PRK08125 bifunctional UDP-gluc 96.4 0.023 4.9E-07 52.8 9.5 35 34-68 314-348 (660)
220 cd00757 ThiF_MoeB_HesA_family 96.4 0.031 6.8E-07 45.2 9.3 95 35-137 21-143 (228)
221 PLN02522 ATP citrate (pro-S)-l 96.4 0.021 4.5E-07 53.1 9.0 118 35-161 10-135 (608)
222 PLN02206 UDP-glucuronate decar 96.4 0.027 5.9E-07 50.1 9.5 91 36-137 120-232 (442)
223 PRK11064 wecC UDP-N-acetyl-D-m 96.4 0.039 8.4E-07 48.7 10.4 32 35-69 3-34 (415)
224 PRK07411 hypothetical protein; 96.4 0.028 6E-07 49.4 9.4 96 35-138 38-161 (390)
225 PLN02494 adenosylhomocysteinas 96.4 0.026 5.6E-07 51.0 9.3 112 25-152 244-356 (477)
226 PRK13243 glyoxylate reductase; 96.4 0.026 5.5E-07 48.5 9.0 103 35-155 150-257 (333)
227 PF07991 IlvN: Acetohydroxy ac 96.4 0.016 3.4E-07 45.5 6.9 89 35-140 4-97 (165)
228 PRK08291 ectoine utilization p 96.4 0.0063 1.4E-07 52.0 5.2 89 35-134 132-224 (330)
229 PRK07530 3-hydroxybutyryl-CoA 96.3 0.029 6.4E-07 46.7 9.0 32 36-70 5-36 (292)
230 TIGR02992 ectoine_eutC ectoine 96.3 0.0068 1.5E-07 51.8 5.3 91 35-136 129-224 (326)
231 COG2085 Predicted dinucleotide 96.3 0.036 7.7E-07 45.2 9.1 86 35-135 1-91 (211)
232 PRK11199 tyrA bifunctional cho 96.3 0.081 1.8E-06 46.1 12.0 91 34-151 97-188 (374)
233 PRK05597 molybdopterin biosynt 96.3 0.037 8E-07 48.0 9.7 95 35-137 28-150 (355)
234 PRK07878 molybdopterin biosynt 96.3 0.034 7.4E-07 48.8 9.5 96 35-138 42-165 (392)
235 PF01073 3Beta_HSD: 3-beta hyd 96.3 0.036 7.7E-07 46.3 9.2 94 39-138 1-115 (280)
236 PRK12480 D-lactate dehydrogena 96.3 0.033 7.1E-07 47.9 9.1 61 35-114 146-206 (330)
237 cd00755 YgdL_like Family of ac 96.2 0.041 9E-07 45.1 9.2 95 35-136 11-133 (231)
238 PLN02545 3-hydroxybutyryl-CoA 96.2 0.034 7.4E-07 46.4 8.9 32 35-69 4-35 (295)
239 PLN00141 Tic62-NAD(P)-related 96.2 0.086 1.9E-06 42.5 10.9 34 35-69 17-50 (251)
240 PRK13403 ketol-acid reductoiso 96.2 0.032 7E-07 48.3 8.7 64 35-114 16-79 (335)
241 COG1260 INO1 Myo-inositol-1-ph 96.2 0.033 7.2E-07 48.5 8.7 128 33-162 3-190 (362)
242 PRK06444 prephenate dehydrogen 96.2 0.016 3.4E-07 46.6 6.3 28 36-64 1-28 (197)
243 cd01485 E1-1_like Ubiquitin ac 96.2 0.071 1.5E-06 42.4 10.0 96 35-138 19-146 (198)
244 PRK08762 molybdopterin biosynt 96.2 0.052 1.1E-06 47.2 10.0 95 35-137 135-257 (376)
245 PRK01710 murD UDP-N-acetylmura 96.2 0.046 1E-06 48.5 9.8 85 36-135 15-106 (458)
246 PRK09260 3-hydroxybutyryl-CoA 96.1 0.015 3.2E-07 48.5 6.2 101 36-146 2-126 (288)
247 COG0300 DltE Short-chain dehyd 96.1 0.07 1.5E-06 44.8 10.1 88 31-138 2-92 (265)
248 PRK05600 thiamine biosynthesis 96.1 0.055 1.2E-06 47.3 9.8 96 35-138 41-164 (370)
249 PRK06522 2-dehydropantoate 2-r 96.1 0.076 1.7E-06 43.8 10.3 96 36-141 1-104 (304)
250 PTZ00075 Adenosylhomocysteinas 96.1 0.048 1E-06 49.4 9.6 93 27-135 246-339 (476)
251 PLN02657 3,8-divinyl protochlo 96.1 0.047 1E-06 47.6 9.3 35 34-69 59-93 (390)
252 PRK10124 putative UDP-glucose 96.1 0.059 1.3E-06 48.3 10.0 84 35-135 143-235 (463)
253 TIGR03570 NeuD_NnaD sugar O-ac 96.0 0.11 2.5E-06 39.7 10.4 85 37-133 1-86 (201)
254 PRK08229 2-dehydropantoate 2-r 96.0 0.11 2.3E-06 44.0 11.0 107 34-153 1-121 (341)
255 PRK15469 ghrA bifunctional gly 96.0 0.058 1.3E-06 46.0 9.4 63 35-114 136-198 (312)
256 COG1087 GalE UDP-glucose 4-epi 96.0 0.056 1.2E-06 46.5 9.1 92 36-134 1-113 (329)
257 COG1086 Predicted nucleoside-d 96.0 0.029 6.4E-07 51.6 7.8 89 35-135 116-209 (588)
258 PRK06091 membrane protein FdrA 96.0 0.042 9.2E-07 50.5 8.7 72 87-161 101-172 (555)
259 PRK06035 3-hydroxyacyl-CoA deh 96.0 0.033 7.1E-07 46.4 7.5 31 36-69 4-34 (291)
260 cd00401 AdoHcyase S-adenosyl-L 96.0 0.049 1.1E-06 48.4 8.9 96 25-136 192-289 (413)
261 TIGR02197 heptose_epim ADP-L-g 96.0 0.062 1.3E-06 44.1 9.0 30 38-69 1-31 (314)
262 PRK10217 dTDP-glucose 4,6-dehy 95.9 0.025 5.4E-07 47.6 6.8 34 35-69 1-34 (355)
263 PLN00198 anthocyanidin reducta 95.9 0.037 8E-07 46.4 7.7 39 29-68 3-41 (338)
264 TIGR03466 HpnA hopanoid-associ 95.9 0.042 9.1E-07 45.2 7.9 33 36-69 1-33 (328)
265 cd01491 Ube1_repeat1 Ubiquitin 95.9 0.088 1.9E-06 44.6 9.9 96 35-138 19-138 (286)
266 PRK14030 glutamate dehydrogena 95.9 0.11 2.4E-06 46.7 11.0 116 34-161 227-365 (445)
267 COG0334 GdhA Glutamate dehydro 95.9 0.084 1.8E-06 46.9 10.0 113 34-161 206-333 (411)
268 TIGR01327 PGDH D-3-phosphoglyc 95.9 0.056 1.2E-06 49.2 9.3 64 35-114 138-201 (525)
269 TIGR03023 WcaJ_sugtrans Undeca 95.9 0.081 1.8E-06 46.8 10.1 91 35-135 128-223 (451)
270 TIGR03025 EPS_sugtrans exopoly 95.9 0.077 1.7E-06 46.8 9.9 90 35-135 125-220 (445)
271 PRK14106 murD UDP-N-acetylmura 95.9 0.085 1.8E-06 46.3 10.1 85 36-134 6-96 (450)
272 PRK15181 Vi polysaccharide bio 95.9 0.078 1.7E-06 45.0 9.6 33 34-67 14-46 (348)
273 PRK06249 2-dehydropantoate 2-r 95.9 0.17 3.7E-06 42.6 11.5 109 33-152 3-119 (313)
274 PLN02214 cinnamoyl-CoA reducta 95.9 0.092 2E-06 44.6 9.9 34 34-68 9-42 (342)
275 TIGR01181 dTDP_gluc_dehyt dTDP 95.8 0.099 2.1E-06 42.6 9.7 30 37-66 1-31 (317)
276 PRK05086 malate dehydrogenase; 95.8 0.15 3.2E-06 43.5 10.8 35 36-70 1-36 (312)
277 COG0373 HemA Glutamyl-tRNA red 95.8 0.037 8.1E-07 49.2 7.4 86 34-132 177-267 (414)
278 PRK05993 short chain dehydroge 95.8 0.18 3.9E-06 41.1 11.0 31 36-67 5-35 (277)
279 PTZ00082 L-lactate dehydrogena 95.8 0.26 5.6E-06 42.2 12.3 34 34-70 5-39 (321)
280 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.075 1.6E-06 44.8 8.9 32 36-70 3-34 (308)
281 PRK04663 murD UDP-N-acetylmura 95.7 0.18 4E-06 44.4 11.7 87 34-135 6-97 (438)
282 PRK14851 hypothetical protein; 95.7 0.084 1.8E-06 49.7 9.8 97 34-138 42-168 (679)
283 COG1179 Dinucleotide-utilizing 95.7 0.14 3.1E-06 42.8 10.0 93 36-135 31-151 (263)
284 cd01483 E1_enzyme_family Super 95.7 0.15 3.3E-06 37.8 9.4 31 37-69 1-31 (143)
285 PRK14852 hypothetical protein; 95.7 0.077 1.7E-06 51.8 9.6 97 34-138 331-457 (989)
286 cd01336 MDH_cytoplasmic_cytoso 95.6 0.067 1.4E-06 45.9 8.2 73 34-114 1-86 (325)
287 KOG1198 Zinc-binding oxidoredu 95.6 0.061 1.3E-06 46.6 8.0 99 35-139 158-258 (347)
288 PRK08268 3-hydroxy-acyl-CoA de 95.6 0.1 2.2E-06 47.4 9.8 33 35-70 7-39 (507)
289 PLN02260 probable rhamnose bio 95.6 0.08 1.7E-06 49.0 9.2 82 34-138 379-481 (668)
290 PRK06407 ornithine cyclodeamin 95.6 0.038 8.2E-07 46.9 6.5 89 35-134 117-209 (301)
291 PRK08306 dipicolinate synthase 95.6 0.049 1.1E-06 46.1 7.0 86 34-134 151-238 (296)
292 PRK05693 short chain dehydroge 95.5 0.15 3.2E-06 41.4 9.5 32 35-67 1-32 (274)
293 KOG0069 Glyoxylate/hydroxypyru 95.5 0.2 4.4E-06 43.5 10.7 109 36-160 163-275 (336)
294 PRK14031 glutamate dehydrogena 95.5 0.16 3.5E-06 45.7 10.4 114 35-160 228-363 (444)
295 PLN03209 translocon at the inn 95.5 0.049 1.1E-06 50.3 7.3 32 36-68 81-112 (576)
296 PRK02472 murD UDP-N-acetylmura 95.5 0.18 4E-06 44.1 10.7 87 36-135 6-97 (447)
297 PTZ00117 malate dehydrogenase; 95.5 0.45 9.9E-06 40.6 12.8 35 34-70 4-38 (319)
298 PRK15116 sulfur acceptor prote 95.4 0.17 3.8E-06 42.5 9.9 94 35-135 30-151 (268)
299 PRK06932 glycerate dehydrogena 95.4 0.13 2.9E-06 43.8 9.4 59 35-114 147-205 (314)
300 PLN02662 cinnamyl-alcohol dehy 95.4 0.063 1.4E-06 44.3 7.2 33 36-69 5-37 (322)
301 PRK07877 hypothetical protein; 95.4 0.096 2.1E-06 49.7 9.1 96 34-138 106-229 (722)
302 PRK15438 erythronate-4-phospha 95.4 0.06 1.3E-06 47.3 7.2 60 35-114 116-175 (378)
303 KOG2380 Prephenate dehydrogena 95.4 0.13 2.7E-06 45.3 9.0 112 34-161 51-167 (480)
304 PF10087 DUF2325: Uncharacteri 95.4 0.3 6.4E-06 34.3 9.6 91 37-150 1-95 (97)
305 PTZ00325 malate dehydrogenase; 95.4 0.25 5.3E-06 42.5 10.8 38 32-69 5-42 (321)
306 PRK13581 D-3-phosphoglycerate 95.4 0.11 2.3E-06 47.5 8.9 85 34-135 139-228 (526)
307 PRK06901 aspartate-semialdehyd 95.4 0.043 9.3E-07 47.3 6.1 88 35-137 3-95 (322)
308 cd01489 Uba2_SUMO Ubiquitin ac 95.4 0.17 3.6E-06 43.4 9.7 92 37-136 1-121 (312)
309 PRK00141 murD UDP-N-acetylmura 95.3 0.22 4.8E-06 44.5 10.8 91 29-135 9-103 (473)
310 PLN02650 dihydroflavonol-4-red 95.3 0.075 1.6E-06 44.9 7.5 33 35-68 5-37 (351)
311 COG0677 WecC UDP-N-acetyl-D-ma 95.3 0.14 3E-06 45.6 9.1 105 34-151 8-145 (436)
312 PRK10675 UDP-galactose-4-epime 95.3 0.16 3.4E-06 42.3 9.3 30 36-66 1-30 (338)
313 PRK00257 erythronate-4-phospha 95.3 0.13 2.8E-06 45.3 9.0 60 35-114 116-175 (381)
314 PRK12921 2-dehydropantoate 2-r 95.3 0.14 3E-06 42.4 8.9 96 36-141 1-106 (305)
315 TIGR01777 yfcH conserved hypot 95.3 0.14 3.1E-06 41.3 8.7 31 38-69 1-31 (292)
316 PLN02260 probable rhamnose bio 95.3 0.25 5.4E-06 45.8 11.3 33 34-66 5-38 (668)
317 PRK06182 short chain dehydroge 95.3 0.38 8.3E-06 38.9 11.2 32 36-68 4-35 (273)
318 COG3268 Uncharacterized conser 95.2 0.054 1.2E-06 47.2 6.3 119 33-160 4-129 (382)
319 PRK06199 ornithine cyclodeamin 95.2 0.045 9.7E-07 48.0 5.9 97 36-141 156-264 (379)
320 KOG2017 Molybdopterin synthase 95.2 0.042 9E-07 48.1 5.5 96 35-138 66-189 (427)
321 PRK15409 bifunctional glyoxyla 95.2 0.29 6.3E-06 42.0 10.6 65 34-114 144-208 (323)
322 COG0743 Dxr 1-deoxy-D-xylulose 95.2 0.18 3.9E-06 44.3 9.3 99 35-138 1-121 (385)
323 TIGR01179 galE UDP-glucose-4-e 95.1 0.18 3.8E-06 41.2 8.9 29 37-66 1-29 (328)
324 PRK08057 cobalt-precorrin-6x r 95.1 0.17 3.7E-06 42.0 8.8 86 34-134 1-96 (248)
325 PLN02986 cinnamyl-alcohol dehy 95.1 0.11 2.4E-06 43.2 7.8 34 36-70 6-39 (322)
326 PRK12464 1-deoxy-D-xylulose 5- 95.1 0.13 2.8E-06 45.4 8.4 115 40-155 1-135 (383)
327 PRK05865 hypothetical protein; 95.1 0.18 3.9E-06 48.7 10.0 32 36-68 1-32 (854)
328 cd01484 E1-2_like Ubiquitin ac 95.1 0.27 5.8E-06 40.5 9.7 94 37-138 1-124 (234)
329 PRK01438 murD UDP-N-acetylmura 95.1 0.18 3.9E-06 44.8 9.4 88 35-134 16-106 (480)
330 COG0604 Qor NADPH:quinone redu 95.1 0.12 2.5E-06 44.2 7.9 99 36-139 144-244 (326)
331 COG0287 TyrA Prephenate dehydr 95.1 0.4 8.7E-06 40.4 11.0 107 35-152 3-112 (279)
332 PRK06823 ornithine cyclodeamin 95.0 0.05 1.1E-06 46.5 5.5 91 35-136 128-222 (315)
333 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.0 0.14 3.1E-06 46.4 8.8 32 36-70 6-37 (503)
334 PF00056 Ldh_1_N: lactate/mala 95.0 0.031 6.8E-07 42.2 3.8 71 36-113 1-76 (141)
335 TIGR01087 murD UDP-N-acetylmur 95.0 0.3 6.4E-06 42.7 10.4 85 37-135 1-91 (433)
336 PRK05225 ketol-acid reductoiso 95.0 0.074 1.6E-06 48.1 6.6 96 22-133 19-127 (487)
337 PLN02725 GDP-4-keto-6-deoxyman 95.0 0.094 2E-06 42.8 6.8 57 39-114 1-57 (306)
338 PRK08177 short chain dehydroge 95.0 0.19 4.2E-06 39.4 8.4 33 35-68 1-33 (225)
339 TIGR02853 spore_dpaA dipicolin 94.9 0.047 1E-06 46.0 5.0 70 34-119 150-221 (287)
340 KOG0172 Lysine-ketoglutarate r 94.9 0.081 1.8E-06 46.9 6.6 115 35-161 2-121 (445)
341 cd01490 Ube1_repeat2 Ubiquitin 94.9 0.25 5.3E-06 44.3 9.8 93 37-137 1-130 (435)
342 PRK12320 hypothetical protein; 94.9 0.17 3.7E-06 47.9 9.1 88 36-135 1-99 (699)
343 PRK14982 acyl-ACP reductase; P 94.9 0.064 1.4E-06 46.6 5.9 34 35-69 155-189 (340)
344 TIGR01035 hemA glutamyl-tRNA r 94.9 0.11 2.3E-06 46.0 7.4 81 35-128 180-265 (417)
345 COG0111 SerA Phosphoglycerate 94.9 0.3 6.6E-06 42.0 9.9 80 18-114 124-205 (324)
346 KOG1494 NAD-dependent malate d 94.9 0.061 1.3E-06 46.0 5.5 74 31-113 24-103 (345)
347 PF13607 Succ_CoA_lig: Succiny 94.8 0.27 5.9E-06 37.2 8.5 106 37-161 3-126 (138)
348 TIGR02440 FadJ fatty oxidation 94.8 0.19 4.2E-06 47.3 9.3 35 33-69 302-336 (699)
349 PLN02240 UDP-glucose 4-epimera 94.8 0.32 7E-06 40.7 9.7 32 35-67 5-36 (352)
350 PLN02896 cinnamyl-alcohol dehy 94.7 0.076 1.7E-06 44.9 5.9 33 35-68 10-42 (353)
351 PRK11730 fadB multifunctional 94.7 0.3 6.6E-06 46.1 10.4 35 32-69 310-344 (715)
352 COG1004 Ugd Predicted UDP-gluc 94.7 0.47 1E-05 42.2 10.8 107 36-151 1-137 (414)
353 PF02593 dTMP_synthase: Thymid 94.7 0.41 8.9E-06 39.2 9.8 97 44-157 5-104 (217)
354 PF02571 CbiJ: Precorrin-6x re 94.7 0.17 3.7E-06 42.0 7.7 87 36-134 1-97 (249)
355 KOG2733 Uncharacterized membra 94.7 0.04 8.6E-07 48.4 4.1 119 35-160 5-141 (423)
356 PRK06487 glycerate dehydrogena 94.7 0.26 5.6E-06 42.0 9.1 58 35-114 148-205 (317)
357 PRK00045 hemA glutamyl-tRNA re 94.7 0.14 3E-06 45.3 7.6 80 35-127 182-266 (423)
358 PF01370 Epimerase: NAD depend 94.7 0.046 9.9E-07 42.7 4.2 73 38-115 1-74 (236)
359 PRK10084 dTDP-glucose 4,6 dehy 94.7 0.084 1.8E-06 44.4 6.0 32 36-68 1-32 (352)
360 TIGR01472 gmd GDP-mannose 4,6- 94.6 0.085 1.8E-06 44.4 5.9 31 37-68 2-32 (343)
361 PRK03369 murD UDP-N-acetylmura 94.6 0.39 8.5E-06 43.1 10.5 84 36-135 13-99 (488)
362 PRK03803 murD UDP-N-acetylmura 94.5 0.5 1.1E-05 41.6 10.8 87 36-135 7-97 (448)
363 PRK15204 undecaprenyl-phosphat 94.5 0.53 1.1E-05 42.4 11.0 86 36-132 147-236 (476)
364 TIGR03022 WbaP_sugtrans Undeca 94.5 0.38 8.2E-06 42.6 10.0 88 35-135 125-221 (456)
365 PRK00421 murC UDP-N-acetylmura 94.5 0.43 9.3E-06 42.3 10.3 85 35-135 7-95 (461)
366 PLN02928 oxidoreductase family 94.5 0.23 5.1E-06 42.9 8.4 69 35-114 159-234 (347)
367 PF00670 AdoHcyase_NAD: S-aden 94.5 0.051 1.1E-06 42.6 3.8 106 27-151 15-124 (162)
368 PRK13940 glutamyl-tRNA reducta 94.5 0.059 1.3E-06 47.8 4.7 69 36-114 182-250 (414)
369 PRK08410 2-hydroxyacid dehydro 94.4 0.35 7.6E-06 41.1 9.2 60 35-114 145-204 (311)
370 cd05311 NAD_bind_2_malic_enz N 94.4 0.48 1E-05 38.5 9.6 74 35-119 25-110 (226)
371 TIGR03589 PseB UDP-N-acetylglu 94.4 0.35 7.6E-06 40.7 9.1 31 36-66 5-36 (324)
372 PRK00683 murD UDP-N-acetylmura 94.4 0.42 9.2E-06 41.9 9.9 85 36-135 4-88 (418)
373 PLN02989 cinnamyl-alcohol dehy 94.4 0.2 4.4E-06 41.6 7.5 31 36-67 6-36 (325)
374 PLN00106 malate dehydrogenase 94.4 0.31 6.7E-06 41.9 8.8 44 26-69 9-52 (323)
375 PLN02653 GDP-mannose 4,6-dehyd 94.3 0.12 2.5E-06 43.5 6.1 33 35-68 6-38 (340)
376 PRK06091 membrane protein FdrA 94.3 0.57 1.2E-05 43.3 10.7 96 35-142 193-291 (555)
377 TIGR02622 CDP_4_6_dhtase CDP-g 94.3 0.14 3E-06 43.3 6.4 31 36-67 5-35 (349)
378 PLN00203 glutamyl-tRNA reducta 94.3 0.14 3E-06 46.8 6.8 83 35-127 266-353 (519)
379 PRK11790 D-3-phosphoglycerate 94.3 0.39 8.6E-06 42.4 9.5 62 34-114 150-211 (409)
380 PRK06138 short chain dehydroge 94.3 1 2.2E-05 35.5 11.0 32 36-68 6-37 (252)
381 PF08484 Methyltransf_14: C-me 94.2 0.14 3.1E-06 39.7 5.8 87 36-135 69-157 (160)
382 PRK04308 murD UDP-N-acetylmura 94.2 0.66 1.4E-05 40.8 10.8 88 36-135 6-96 (445)
383 PRK11154 fadJ multifunctional 94.2 0.41 9E-06 45.2 9.9 37 31-69 305-341 (708)
384 PRK03806 murD UDP-N-acetylmura 94.2 0.67 1.5E-05 40.6 10.7 84 36-135 7-94 (438)
385 KOG1203 Predicted dehydrogenas 94.2 0.34 7.3E-06 43.2 8.8 39 30-69 74-112 (411)
386 PF02844 GARS_N: Phosphoribosy 94.2 0.32 7E-06 35.1 7.2 87 36-133 1-89 (100)
387 TIGR02354 thiF_fam2 thiamine b 94.2 0.4 8.7E-06 38.3 8.5 34 35-70 21-54 (200)
388 KOG2774 NAD dependent epimeras 94.1 0.27 5.9E-06 41.4 7.6 125 5-138 14-159 (366)
389 PRK06988 putative formyltransf 94.1 0.15 3.1E-06 43.6 6.2 72 35-115 2-86 (312)
390 PRK06180 short chain dehydroge 94.1 0.3 6.5E-06 39.7 7.9 32 35-67 4-35 (277)
391 PRK08267 short chain dehydroge 94.1 0.32 6.9E-06 38.9 7.9 31 35-66 1-31 (260)
392 PRK08340 glucose-1-dehydrogena 94.1 0.36 7.8E-06 38.8 8.2 32 36-69 1-32 (259)
393 PRK10538 malonic semialdehyde 94.1 0.9 1.9E-05 36.2 10.4 30 36-66 1-30 (248)
394 TIGR02441 fa_ox_alpha_mit fatt 94.0 0.37 7.9E-06 45.8 9.3 36 31-69 331-366 (737)
395 cd01486 Apg7 Apg7 is an E1-lik 94.0 0.53 1.1E-05 40.5 9.3 31 37-69 1-31 (307)
396 PRK03659 glutathione-regulated 94.0 0.25 5.4E-06 45.7 7.9 105 35-151 400-510 (601)
397 KOG4777 Aspartate-semialdehyde 94.0 0.13 2.8E-06 43.6 5.5 39 37-75 5-45 (361)
398 cd01338 MDH_choloroplast_like 94.0 0.24 5.2E-06 42.5 7.3 72 34-113 1-85 (322)
399 PF02254 TrkA_N: TrkA-N domain 94.0 0.44 9.4E-06 33.7 7.6 101 38-150 1-107 (116)
400 PLN02686 cinnamoyl-CoA reducta 94.0 0.1 2.2E-06 44.9 5.0 36 33-69 51-86 (367)
401 TIGR02437 FadB fatty oxidation 93.9 0.59 1.3E-05 44.3 10.4 36 31-69 309-344 (714)
402 COG0451 WcaG Nucleoside-diphos 93.9 0.54 1.2E-05 38.2 9.0 31 37-68 2-32 (314)
403 TIGR01381 E1_like_apg7 E1-like 93.9 0.53 1.2E-05 44.3 9.8 98 35-140 338-483 (664)
404 KOG2018 Predicted dinucleotide 93.9 0.25 5.5E-06 43.0 7.1 93 38-137 77-197 (430)
405 PRK07904 short chain dehydroge 93.8 0.2 4.4E-06 40.5 6.4 33 36-68 9-41 (253)
406 PRK03562 glutathione-regulated 93.8 0.54 1.2E-05 43.8 9.8 104 35-151 400-510 (621)
407 PRK09009 C factor cell-cell si 93.8 0.2 4.3E-06 39.4 6.0 30 36-65 1-31 (235)
408 PRK05884 short chain dehydroge 93.7 0.33 7.1E-06 38.5 7.3 30 36-66 1-30 (223)
409 COG0569 TrkA K+ transport syst 93.7 1 2.2E-05 36.5 10.2 94 36-138 1-100 (225)
410 COG1893 ApbA Ketopantoate redu 93.7 0.7 1.5E-05 39.4 9.6 111 36-158 1-120 (307)
411 PLN02306 hydroxypyruvate reduc 93.7 0.53 1.2E-05 41.5 9.0 71 35-114 165-244 (386)
412 PRK07825 short chain dehydroge 93.6 0.97 2.1E-05 36.4 10.0 30 36-66 6-35 (273)
413 COG0059 IlvC Ketol-acid reduct 93.6 0.44 9.6E-06 41.1 8.1 84 35-134 18-106 (338)
414 KOG1014 17 beta-hydroxysteroid 93.6 0.19 4.1E-06 43.2 5.9 31 38-70 52-82 (312)
415 PRK07589 ornithine cyclodeamin 93.6 0.18 3.8E-06 43.9 5.8 92 36-136 130-225 (346)
416 PLN02572 UDP-sulfoquinovose sy 93.5 0.13 2.8E-06 45.7 5.0 32 34-66 46-77 (442)
417 PRK06179 short chain dehydroge 93.5 0.19 4.2E-06 40.4 5.6 32 36-68 5-36 (270)
418 cd05291 HicDH_like L-2-hydroxy 93.4 0.19 4.1E-06 42.4 5.7 31 37-69 2-33 (306)
419 PRK14573 bifunctional D-alanyl 93.4 0.83 1.8E-05 43.6 10.5 85 35-135 4-92 (809)
420 PRK01368 murD UDP-N-acetylmura 93.4 1.1 2.4E-05 40.1 10.7 84 36-135 7-92 (454)
421 PRK07231 fabG 3-ketoacyl-(acyl 93.4 0.12 2.7E-06 40.7 4.3 32 36-68 6-37 (251)
422 KOG0068 D-3-phosphoglycerate d 93.4 0.58 1.3E-05 41.1 8.5 87 36-139 147-238 (406)
423 cd00704 MDH Malate dehydrogena 93.4 0.47 1E-05 40.7 8.1 71 36-114 1-84 (323)
424 PRK06395 phosphoribosylamine-- 93.4 0.84 1.8E-05 40.6 9.9 92 34-134 1-93 (435)
425 COG2423 Predicted ornithine cy 93.3 0.2 4.3E-06 43.3 5.7 89 36-134 131-222 (330)
426 PRK06953 short chain dehydroge 93.3 0.64 1.4E-05 36.4 8.2 31 35-66 1-31 (222)
427 COG2403 Predicted GTPase [Gene 93.3 0.46 1E-05 42.2 7.9 97 34-134 5-113 (449)
428 TIGR01759 MalateDH-SF1 malate 93.3 0.44 9.5E-06 41.0 7.7 35 34-69 2-42 (323)
429 PRK04690 murD UDP-N-acetylmura 93.2 1.3 2.8E-05 39.7 10.9 85 36-135 9-98 (468)
430 TIGR03366 HpnZ_proposed putati 93.2 0.63 1.4E-05 38.1 8.4 96 36-137 122-219 (280)
431 PRK09186 flagellin modificatio 93.2 0.53 1.1E-05 37.3 7.6 31 36-67 5-35 (256)
432 TIGR01082 murC UDP-N-acetylmur 93.2 0.93 2E-05 40.0 9.8 83 37-135 1-87 (448)
433 TIGR03013 EpsB_2 sugar transfe 93.1 0.58 1.3E-05 41.5 8.6 85 36-135 125-218 (442)
434 PRK05565 fabG 3-ketoacyl-(acyl 93.1 0.55 1.2E-05 36.8 7.6 34 35-69 5-38 (247)
435 KOG2250 Glutamate/leucine/phen 93.1 1.9 4.1E-05 39.3 11.7 114 31-151 247-381 (514)
436 cd08295 double_bond_reductase_ 93.1 0.41 8.8E-06 40.1 7.2 96 36-137 153-252 (338)
437 TIGR00514 accC acetyl-CoA carb 93.1 0.42 9E-06 42.3 7.5 97 35-134 2-103 (449)
438 PRK01390 murD UDP-N-acetylmura 93.0 1.1 2.4E-05 39.6 10.1 84 36-135 10-98 (460)
439 cd05293 LDH_1 A subgroup of L- 93.0 0.53 1.1E-05 40.2 7.8 70 36-113 4-78 (312)
440 PRK07578 short chain dehydroge 93.0 0.37 8E-06 37.1 6.3 30 36-67 1-30 (199)
441 TIGR01142 purT phosphoribosylg 93.0 0.3 6.6E-06 41.8 6.3 29 37-67 1-29 (380)
442 cd08293 PTGR2 Prostaglandin re 93.0 0.43 9.3E-06 39.8 7.1 95 36-136 156-254 (345)
443 PRK12938 acetyacetyl-CoA reduc 92.9 1.4 3.1E-05 34.7 9.8 31 37-68 5-35 (246)
444 PRK02006 murD UDP-N-acetylmura 92.8 1.7 3.6E-05 39.0 11.1 88 36-135 8-102 (498)
445 PRK09880 L-idonate 5-dehydroge 92.8 0.81 1.8E-05 38.5 8.7 95 36-138 171-268 (343)
446 PRK02705 murD UDP-N-acetylmura 92.8 1.2 2.5E-05 39.3 9.9 84 37-135 2-97 (459)
447 COG1063 Tdh Threonine dehydrog 92.7 0.79 1.7E-05 39.4 8.6 99 37-141 171-274 (350)
448 COG0702 Predicted nucleoside-d 92.7 0.2 4.3E-06 40.0 4.6 33 36-69 1-33 (275)
449 PRK12829 short chain dehydroge 92.7 1 2.2E-05 35.8 8.6 31 36-67 12-42 (264)
450 PRK07577 short chain dehydroge 92.6 0.28 6.1E-06 38.4 5.3 32 36-68 4-35 (234)
451 KOG1430 C-3 sterol dehydrogena 92.6 1.8 3.8E-05 38.0 10.6 102 34-138 3-125 (361)
452 PRK06719 precorrin-2 dehydroge 92.6 1.3 2.8E-05 34.0 8.7 80 36-130 14-94 (157)
453 KOG2653 6-phosphogluconate deh 92.5 0.48 1E-05 42.0 6.9 118 35-162 6-129 (487)
454 PRK07023 short chain dehydroge 92.5 0.23 5E-06 39.4 4.7 32 35-67 1-32 (243)
455 PRK06153 hypothetical protein; 92.5 0.6 1.3E-05 41.4 7.6 93 36-136 177-297 (393)
456 TIGR01202 bchC 2-desacetyl-2-h 92.5 0.61 1.3E-05 38.9 7.5 87 36-138 146-233 (308)
457 PRK06196 oxidoreductase; Provi 92.5 0.54 1.2E-05 39.1 7.2 32 36-68 27-58 (315)
458 PF07994 NAD_binding_5: Myo-in 92.5 0.24 5.3E-06 42.2 5.0 42 120-162 190-231 (295)
459 TIGR02825 B4_12hDH leukotriene 92.4 1.7 3.7E-05 36.0 10.0 95 36-137 140-238 (325)
460 PRK05442 malate dehydrogenase; 92.4 0.55 1.2E-05 40.4 7.1 71 34-113 3-87 (326)
461 PRK12745 3-ketoacyl-(acyl-carr 92.3 0.65 1.4E-05 36.8 7.1 31 36-67 3-33 (256)
462 PRK12742 oxidoreductase; Provi 92.3 1.1 2.3E-05 35.1 8.3 32 36-68 7-38 (237)
463 PRK00005 fmt methionyl-tRNA fo 92.3 0.44 9.4E-06 40.4 6.3 71 36-115 1-87 (309)
464 PRK00885 phosphoribosylamine-- 92.2 0.77 1.7E-05 40.2 8.0 89 36-134 1-90 (420)
465 cd01078 NAD_bind_H4MPT_DH NADP 92.2 0.38 8.3E-06 37.5 5.6 34 34-69 27-60 (194)
466 PRK05872 short chain dehydroge 92.2 2.2 4.7E-05 35.2 10.4 30 36-66 10-39 (296)
467 PRK08416 7-alpha-hydroxysteroi 92.2 0.8 1.7E-05 36.8 7.6 32 36-68 9-40 (260)
468 TIGR01757 Malate-DH_plant mala 92.1 0.31 6.6E-06 43.1 5.4 26 34-59 43-68 (387)
469 PF02423 OCD_Mu_crystall: Orni 92.1 0.3 6.6E-06 41.5 5.2 90 36-134 129-221 (313)
470 COG1090 Predicted nucleoside-d 92.1 0.4 8.6E-06 40.9 5.8 64 38-114 1-64 (297)
471 PRK06463 fabG 3-ketoacyl-(acyl 92.1 3.2 6.9E-05 33.0 10.9 32 36-68 8-39 (255)
472 PLN00112 malate dehydrogenase 92.1 0.44 9.5E-06 42.9 6.3 71 34-113 99-183 (444)
473 TIGR00877 purD phosphoribosyla 92.0 1 2.3E-05 39.2 8.6 91 36-134 1-92 (423)
474 PRK12549 shikimate 5-dehydroge 92.0 0.47 1E-05 39.8 6.2 35 34-70 126-160 (284)
475 PRK12743 oxidoreductase; Provi 92.0 1.5 3.2E-05 35.1 8.9 33 36-69 3-35 (256)
476 TIGR01763 MalateDH_bact malate 92.0 2 4.2E-05 36.5 9.9 69 36-114 2-77 (305)
477 cd05297 GH4_alpha_glucosidase_ 91.9 0.48 1E-05 42.0 6.4 89 36-132 1-103 (423)
478 PLN02602 lactate dehydrogenase 91.9 0.76 1.7E-05 40.0 7.5 68 36-113 38-112 (350)
479 PRK12825 fabG 3-ketoacyl-(acyl 91.9 0.35 7.6E-06 37.7 5.0 34 35-69 6-39 (249)
480 cd00650 LDH_MDH_like NAD-depen 91.8 1.9 4.1E-05 35.4 9.5 68 38-112 1-76 (263)
481 PRK08017 oxidoreductase; Provi 91.8 4.4 9.5E-05 32.0 11.4 30 37-67 4-33 (256)
482 PRK10669 putative cation:proto 91.8 0.81 1.8E-05 41.7 7.9 32 36-70 418-449 (558)
483 TIGR01408 Ube1 ubiquitin-activ 91.8 1.1 2.4E-05 44.1 9.3 95 36-138 25-145 (1008)
484 cd01337 MDH_glyoxysomal_mitoch 91.8 1 2.2E-05 38.6 8.0 35 36-70 1-35 (310)
485 cd01493 APPBP1_RUB Ubiquitin a 91.8 1.8 3.9E-05 38.7 9.9 32 36-69 21-52 (425)
486 TIGR00518 alaDH alanine dehydr 91.7 0.46 9.9E-06 41.4 6.0 41 27-70 159-199 (370)
487 PRK00066 ldh L-lactate dehydro 91.7 0.74 1.6E-05 39.3 7.1 68 35-113 6-80 (315)
488 PRK12828 short chain dehydroge 91.7 2.4 5.1E-05 32.9 9.6 31 36-67 8-38 (239)
489 cd08230 glucose_DH Glucose deh 91.7 1 2.2E-05 38.0 7.9 93 36-138 174-271 (355)
490 PRK06523 short chain dehydroge 91.6 3.2 7E-05 33.0 10.4 31 36-67 10-40 (260)
491 cd08292 ETR_like_2 2-enoyl thi 91.5 0.88 1.9E-05 37.2 7.2 96 36-137 141-239 (324)
492 PRK06718 precorrin-2 dehydroge 91.5 2.6 5.6E-05 33.6 9.7 87 36-134 11-98 (202)
493 PRK12744 short chain dehydroge 91.5 2.6 5.6E-05 33.6 9.8 32 36-68 9-40 (257)
494 PRK05854 short chain dehydroge 91.5 1.2 2.6E-05 37.3 8.1 34 34-68 13-46 (313)
495 PRK07890 short chain dehydroge 91.5 1 2.2E-05 35.7 7.4 30 36-66 6-35 (258)
496 cd08294 leukotriene_B4_DH_like 91.5 0.79 1.7E-05 37.6 6.9 94 36-136 145-241 (329)
497 KOG2711 Glycerol-3-phosphate d 91.4 0.62 1.3E-05 40.7 6.3 98 34-141 20-143 (372)
498 PRK08251 short chain dehydroge 91.3 1 2.2E-05 35.6 7.2 31 36-67 3-33 (248)
499 cd05295 MDH_like Malate dehydr 91.3 0.28 6.2E-06 44.2 4.4 72 34-114 122-207 (452)
500 TIGR02685 pter_reduc_Leis pter 91.3 1.3 2.9E-05 35.6 8.0 32 37-69 3-34 (267)
No 1
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.97 E-value=8.8e-31 Score=194.96 Aligned_cols=120 Identities=33% Similarity=0.552 Sum_probs=107.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
|||+|+|++||||+.+++.+.++++++|++++++.. .|+|++++++.. +.++++++|++++++ .+||+||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence 799999988999999999999999999999999653 799999999987 889999999999996 5999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
||+|+...++++.|+++|+|+|+|||||++++.++|++++++.|+++++|
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SS
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999987
No 2
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.8e-27 Score=196.67 Aligned_cols=122 Identities=30% Similarity=0.427 Sum_probs=113.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
+||||+|+|++||||+.+++++.+.|+++|+++++++ ..|.|++++++.. ..++++++++.... .++||+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence 4799999999999999999999999999999999954 4688999999886 88999999976665 499999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
||||+|+...++++.|+++|+++|+|||||++++.++|++++++.|+|+++|
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~N 125 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPN 125 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEecc
Confidence 9999999999999999999999999999999999999999999999999987
No 3
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.92 E-value=4.5e-24 Score=177.29 Aligned_cols=121 Identities=30% Similarity=0.451 Sum_probs=108.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI 111 (163)
|+||+|+|++|+||+.+++.+.+.|+++|++++|+. ..+++++++.+.. +.++++++|++++ . .++||||
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI 73 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI 73 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence 589999997899999999999999999999999942 2366777777654 5678999999998 4 4799999
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh--cCeEEcCC
Q 031216 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMVSTGS 162 (163)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~--~~Vv~tg~ 162 (163)
|||+|+.+.+++..|+++|+|+|+||||+++++.++|.++|++ .+++++.+
T Consensus 74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 9999999999999999999999999999999999999999999 77999875
No 4
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.91 E-value=1.8e-23 Score=175.25 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=108.6
Q ss_pred CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhccCCCCCCccee--CCHHHHHhcccccCC
Q 031216 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQSKA 106 (163)
Q Consensus 30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~-~l~g~~~~~gi~v~--~~l~ell~~~~~~~~ 106 (163)
.|+++.+||+|.|+.|+||+++++.+.+ ++++||+.+|+...|.+.+ ++.| .+++++ +|+++++.+++ ...
T Consensus 6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~-~~~ 79 (286)
T PLN02775 6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK-AEY 79 (286)
T ss_pred CCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-ccC
Confidence 3456679999999999999999999998 9999999999776777777 6654 278888 99999996411 126
Q ss_pred cc-EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 107 RA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 107 ~D-VVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
+| |+||||+|+.+.++++.|+++|+|+|+|||||++++.+++.+ ++..|+|+++|
T Consensus 80 ~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~-~~~i~vv~apN 135 (286)
T PLN02775 80 PNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVE-ESGVYAVIAPQ 135 (286)
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh-cCCccEEEECc
Confidence 99 999999999999999999999999999999999998888766 56799999986
No 5
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.90 E-value=7.6e-23 Score=170.79 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=105.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhccCCCCCCcce------eCCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv-id~~~~g~~~~~l~g~~~~~gi~v------~~~l~ell~~~~~~~~~D 108 (163)
+||+|.||+|+||+++++.+.. ++++||+. +|.+..+.+.+++.|. ++++ +++++++++ ..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence 5899999999999999999987 99999998 8876677788888753 7888 899999986 4699
Q ss_pred -EEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 109 -VVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
|+||||+|+.+.++++.|+++|+|+|+|||||++++.++|.+.++ .|++++++
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~-i~~l~apN 124 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAK-HPAVIAPN 124 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcC-CCEEEECc
Confidence 999999999999999999999999999999999999999988764 99999986
No 6
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.88 E-value=5.6e-22 Score=163.82 Aligned_cols=116 Identities=27% Similarity=0.351 Sum_probs=102.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|+||+|+|++|+||+.+++.+.+.++++|++++|+.... .... ...++++++|+++++. ++|+|||||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence 589999997799999999999989999999999965321 1111 1457788999999884 799999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
+|+.+.+++..|+++|+|+|+||||++.++.++|.+++++.|++++.+
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n 116 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPN 116 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECc
Confidence 999999999999999999999999999999999999999999999875
No 7
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.77 E-value=6e-18 Score=122.71 Aligned_cols=114 Identities=26% Similarity=0.316 Sum_probs=98.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|||+|+| +|++|+.+.+.+.+. +++++++++|+.. .+...+. ..++++.|+|++++++. +++|+|+.+|
T Consensus 1 i~v~iiG-~G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIG-AGSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEEES-TSHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence 6999999 599999999888887 9999999999753 2222222 25678899999999985 7899999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~ 159 (163)
++..+.+++..++++|+||++++| +.+.++.++|.+++++.++.+
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999999999 789999999999999988654
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.71 E-value=1.7e-16 Score=131.80 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=93.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|+||+|+| +|+||+.+++.+.+.++++|++++++.....+..+.. ..++++++|++++ . .++|+|+++|
T Consensus 1 m~rVgIiG-~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t 69 (265)
T PRK13303 1 MMKVAMIG-FGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA 69 (265)
T ss_pred CcEEEEEC-CCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence 68999999 5999999999999999999999997542222222222 1257889999998 5 5899999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHHhhhcCeE
Q 031216 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMV 158 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigttg-~~-~e~~~~L~~~A~~~~Vv 158 (163)
.|..+.+++..++++|+|+++++++ ++ .+..++|.++|++.++.
T Consensus 70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 9999999999999999999999996 44 55678999999998864
No 9
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.66 E-value=7e-16 Score=129.44 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=97.7
Q ss_pred CCeeEEEEcCCC-HHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEE
Q 031216 34 SNIKVIINGAVK-EIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 34 ~~irV~VvGa~G-~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVV 110 (163)
+++||||+|+ | .+++.++..+.+.++ +++++++|+.. .++..+. ...+++ .|+|++++++. +++|+|
T Consensus 2 ~~irvgiiG~-G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V 71 (342)
T COG0673 2 KMIRVGIIGA-GGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAV 71 (342)
T ss_pred CeeEEEEEcc-cHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEE
Confidence 5799999995 6 556779999998888 79999999653 2223332 145564 89999999984 669999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216 111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t 160 (163)
+.+|++..+.+++..|+++||||+++|| +.|.++.++|.++|++.++.++
T Consensus 72 ~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 72 YIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred EEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 9999999999999999999999999999 8999999999999999987653
No 10
>PRK11579 putative oxidoreductase; Provisional
Probab=99.66 E-value=1.5e-15 Score=129.41 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=96.5
Q ss_pred CeeEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~-~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
++||||+| +|.||+ .++..+...++++|++++|+.. ....+. ..++++|+|++++++. .++|+|+.+
T Consensus 4 ~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~ell~~----~~vD~V~I~ 71 (346)
T PRK11579 4 KIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKAD-----WPTVTVVSEPQHLFND----PNIDLIVIP 71 (346)
T ss_pred cceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHhh-----CCCCceeCCHHHHhcC----CCCCEEEEc
Confidence 59999999 699998 5788888899999999999643 112111 2246689999999974 789999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t 160 (163)
|++..+.+++..|+++||||++++| +.+.++.++|.++|++.++++.
T Consensus 72 tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 72 TPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 9999999999999999999999999 7899999999999999988753
No 11
>PRK10206 putative oxidoreductase; Provisional
Probab=99.59 E-value=1.2e-14 Score=124.42 Aligned_cols=115 Identities=22% Similarity=0.199 Sum_probs=94.3
Q ss_pred CeeEEEEcCCCHHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG-~~i~~~i~~-~~~~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVI 111 (163)
|+||||+| +|+++ +.++..+.. .++++|++++|+... . .++.. .+ ++++|+|++++++. .++|+|+
T Consensus 1 ~irvgiiG-~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~--~-~~~~~---~~~~~~~~~~~~ell~~----~~iD~V~ 69 (344)
T PRK10206 1 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK--P-EEQAP---IYSHIHFTSDLDEVLND----PDVKLVV 69 (344)
T ss_pred CeEEEEEC-CCHHHhheehhhHhcCCCCEEEEEEEcCChh--H-HHHHH---hcCCCcccCCHHHHhcC----CCCCEEE
Confidence 68999999 69976 457776644 578999999997531 1 12221 23 36789999999974 7899999
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEc
Q 031216 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~t 160 (163)
.+|++..+.+++..|+++||||+++|| ..+.++.++|.++|++.++.+.
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 899999999999999999999999999 7899999999999999997764
No 12
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=99.57 E-value=1.3e-14 Score=124.64 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=103.7
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---------CCcc---------hhhhccCCCCCCcceeCC
Q 031216 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGED---------IGMVCDMEQPLEIPVMSD 93 (163)
Q Consensus 32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---------~g~~---------~~~l~g~~~~~gi~v~~~ 93 (163)
..+|+|||++|+ |.||+.++.++...|+++++++.|+.. .|++ +......-+...+.+++|
T Consensus 14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D 92 (438)
T COG4091 14 EGKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDD 92 (438)
T ss_pred cCCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecc
Confidence 346899999995 999999999999999999999999532 1211 111111002456778899
Q ss_pred HHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 94 LTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
.++++.. ..+|||||.| .|+...++...++.+|||+|+-.-..|-.-...|++.|++.|++||++
T Consensus 93 ~~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~ 158 (438)
T COG4091 93 AELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGG 158 (438)
T ss_pred hhhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEecc
Confidence 9998875 8999999999 788889999999999999999888888888899999999999999987
No 13
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.56 E-value=4.4e-14 Score=117.28 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=92.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
|+||+|+| +|+||+.+++.+.+.+ ++++++++|+.. ....++.. ..+.+.++++++++. ++|+|+++
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a~---~~~~~~~~~~~ell~------~~DvVvi~ 68 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNL--EKAENLAS---KTGAKACLSIDELVE------DVDLVVEC 68 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHHH---hcCCeeECCHHHHhc------CCCEEEEc
Confidence 58999999 6999999999988764 899999999653 22233322 346678899999884 89999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCe
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASM 157 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigttg~--~~e~~~~L~~~A~~~~V 157 (163)
+.|+.+.+++..++++|+++++.+++. +.+..++|.++|++.++
T Consensus 69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999988853 78888999999999884
No 14
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.52 E-value=8.6e-14 Score=119.82 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=90.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
.++||+|+| + +||+.+++.+.+.+ +++|+|++|+.. +++.++. ..++++.|+|++++++. .++|+|..
T Consensus 2 ~~~rVgViG-~-~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~i 70 (343)
T TIGR01761 2 DVQSVVVCG-T-RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVV 70 (343)
T ss_pred CCcEEEEEe-H-HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEe
Confidence 469999999 4 78999999999888 899999999753 2333333 25678899999999962 34444443
Q ss_pred cc--CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 113 fT--~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
-| .+..+.++++.|+++||||++++|=. .++.++|.++|++.++++
T Consensus 71 pt~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l 118 (343)
T TIGR01761 71 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRY 118 (343)
T ss_pred CCCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEE
Confidence 22 34677999999999999999999944 689999999999998875
No 15
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.46 E-value=7.7e-13 Score=110.34 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=88.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhccCCCCCC-cceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
++||||+| +|+||+.+++.+.. .++++|++++|+.. .+..++.. .++ ...++++++++. ++|+|+.
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a~---~~g~~~~~~~~eell~------~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFIW---GLRRPPPVVPLDQLAT------HADIVVE 73 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHHH---hcCCCcccCCHHHHhc------CCCEEEE
Confidence 59999999 69999999999987 48999999999753 12223321 334 356789999974 7899999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (163)
+++++.+.+++..++++|+++++..++- .++.++|.++|++.++-
T Consensus 74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQ 118 (271)
T ss_pred CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCE
Confidence 9999999999999999999999976552 34678999999997753
No 16
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.45 E-value=7.2e-13 Score=113.72 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=88.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhccCCCCCC-cc------eeCC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMSD 93 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~-----~~g~~~~~l~g~~~~~g-i~------v~~~ 93 (163)
++||+|+| +|.||+.+++.+.+.+ +++|++++|++ ..|.+..++.......+ .. .+.+
T Consensus 2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 58999999 6999999999998764 79999999953 23444433322111112 11 2358
Q ss_pred HHHHHhcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 94 LTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
+++++.. .++|+|+|+|.+.. ..++++.++++|+|||+++.+......++|.++|++.++.+
T Consensus 81 ~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~ 147 (341)
T PRK06270 81 GLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRF 147 (341)
T ss_pred HHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEE
Confidence 8998864 68999999986543 37899999999999999876554556789999999987643
No 17
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.43 E-value=1e-12 Score=115.78 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=91.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~ 105 (163)
++||+|+| +|.+|+.+++.+.+++ +++|++++|++.. .... .. ..+..+++|+++++.. .
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~--~~~~---~~-~~~~~~~~d~~~ll~d----~ 71 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--KDRG---VD-LPGILLTTDPEELVND----P 71 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh--hccC---CC-CcccceeCCHHHHhhC----C
Confidence 59999999 6999999999887653 7899999996431 1111 11 2345678999999974 7
Q ss_pred CccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216 106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (163)
Q Consensus 106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (163)
++|+|+++|.+ +.+.++++.|+++|||||+..+++..++.++|.++|+++++.
T Consensus 72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999854 567899999999999999988888888999999999998873
No 18
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=2.3e-12 Score=110.35 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=100.5
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216 32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (163)
Q Consensus 32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV 109 (163)
.+..+|+|++| .|+|++.+++.+...| +.+++++.|+.. ..+.+++....-.+..+|+++|+++.+ +.+||
T Consensus 3 ~s~~ir~Gi~g-~g~ia~~f~~al~~~p~s~~~Ivava~~s~--~~A~~fAq~~~~~~~k~y~syEeLakd----~~vDv 75 (351)
T KOG2741|consen 3 DSATIRWGIVG-AGRIARDFVRALHTLPESNHQIVAVADPSL--ERAKEFAQRHNIPNPKAYGSYEELAKD----PEVDV 75 (351)
T ss_pred CCceeEEEEee-hhHHHHHHHHHhccCcccCcEEEEEecccH--HHHHHHHHhcCCCCCccccCHHHHhcC----CCcCE
Confidence 45679999999 5999999999999999 999999999743 445555531101145689999999974 88999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEE
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~ 159 (163)
|..-++...+.+.+..++++||||++++| ..+.+|.++|.++|++.++++
T Consensus 76 Vyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~ 126 (351)
T KOG2741|consen 76 VYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFF 126 (351)
T ss_pred EEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEE
Confidence 88556666789999999999999999999 899999999999999999875
No 19
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.41 E-value=2.7e-12 Score=109.80 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=83.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
++||+|+| +|+||+.+++.+.+.|++||+|++|++..+ .... ..++..+.+.++++ .++|+|+.++
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~~------~~~v~~~~d~~e~l------~~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLDT------ETPVYAVADDEKHL------DDVDVLILCM 68 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHhh------cCCccccCCHHHhc------cCCCEEEEcC
Confidence 59999999 799999999999999999999999975311 1111 22333345666665 3899999888
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhc
Q 031216 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKA 155 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigttg-~-~~e~~~~L~~~A~~~ 155 (163)
.+..+.+.+..++++|+|||...+- . .++..++|.++|++.
T Consensus 69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~ 111 (324)
T TIGR01921 69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAA 111 (324)
T ss_pred CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHc
Confidence 7778899999999999999997663 2 357789999999973
No 20
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.36 E-value=1.5e-12 Score=94.99 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHhcC---CcEEEEEEecCC-CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchh
Q 031216 43 AVKEIGRAAVIAVTKAR---GMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118 (163)
Q Consensus 43 a~G~mG~~i~~~i~~~~---~~eLvgvid~~~-~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~ 118 (163)
++|.||+.+++.+.+.+ +++++++++++. ...+.... ..+..++.+++++++. .++|+|||+|.++.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSEA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCchH
Confidence 16999999999999887 899999999761 11111111 2345678999999974 58999999999999
Q ss_pred HHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHHhhhcCeE
Q 031216 119 VYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMV 158 (163)
Q Consensus 119 ~~~~~~~al~~G~~vVigttg~--~~e~~~~L~~~A~~~~Vv 158 (163)
..+++..++++|+|||+...+. +....++|.++|++.++-
T Consensus 72 ~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 72 VAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVR 113 (117)
T ss_dssp HHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence 9999999999999999977743 448889999999998863
No 21
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.31 E-value=3.4e-11 Score=100.48 Aligned_cols=109 Identities=8% Similarity=0.146 Sum_probs=90.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
.+||+|+| +|.||+.+++.+... ++++|+++.++.. .....+.+ .+++++|+++++. .++|+|++
T Consensus 2 ~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVVE 68 (267)
T PRK13301 2 THRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVVE 68 (267)
T ss_pred ceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEEE
Confidence 47999999 699999999998753 4599999988643 22223321 2678899999876 59999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCC--CCHHHHHHHHHHhhhcC
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKAS 156 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg--~~~e~~~~L~~~A~~~~ 156 (163)
+..|+.+.+|....|++|+++++..+| .|++..++|.++|++.+
T Consensus 69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999986 37788899999999865
No 22
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.30 E-value=1.8e-11 Score=105.16 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=75.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------Ccchhh----hcc-CCCCCCcceeCCHHHHHhc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIGM----VCD-MEQPLEIPVMSDLTMVLGS 100 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~---------g~~~~~----l~g-~~~~~gi~v~~~l~ell~~ 100 (163)
|+||+|+|+ |+|||.+++.+.++++++|+|+.|+... |.+... ... . ...++.+++++++++.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence 689999995 9999999999999999999999995321 221100 000 1 1235778888888874
Q ss_pred ccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216 101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg 139 (163)
++|+|+|||.+..+.+++..++++|+++|.-.+.
T Consensus 78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence 7999999999999999999999999999985543
No 23
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.27 E-value=3.7e-11 Score=103.10 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=88.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhccCCCCCC-ccee--------
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM-------- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~-----~~g~~~~~l~g~~~~~g-i~v~-------- 91 (163)
++||+|.| .|.+|+.+++.+.+.. +++|+++.|++ ..|-++.++.......+ +.-+
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 58999999 6999999999887631 48999999953 23444433321110111 0111
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc--CeEEcCCC
Q 031216 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA--SMVSTGSV 163 (163)
Q Consensus 92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~--~Vv~tg~~ 163 (163)
.++++++.. .++|||||+|.++.+.++...++++|+|||+++++.-....++|.++|++. .++|+++|
T Consensus 81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v 150 (336)
T PRK08374 81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATV 150 (336)
T ss_pred CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccc
Confidence 177888853 589999999999999999999999999999999873334556777777774 57777764
No 24
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.24 E-value=7.4e-11 Score=99.44 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=77.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVIDf 113 (163)
++||+|+| +|+||+.++..+.+.+++++++++|++.... .-.+. ...|++. +++++++++. +++|+|+++
T Consensus 1 klrVAIIG-~G~IG~~h~~~ll~~~~~elvaV~d~d~es~-~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia 71 (285)
T TIGR03215 1 KVKVAIIG-SGNIGTDLMYKLLRSEHLEMVAMVGIDPESD-GLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA 71 (285)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHhCCCcEEEEEEeCCcccH-HHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence 47999999 5999999988888899999999999643211 00121 1457765 5689999874 689999999
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigttg~ 140 (163)
|.+..+.+++..++++|+||+..||.+
T Consensus 72 Tp~~~H~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 72 TSAKAHARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred CCcHHHHHHHHHHHHcCCEEEECCccc
Confidence 999999999999999999999999854
No 25
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.21 E-value=1.5e-10 Score=85.31 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=71.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCCCC-CCcceeC-CHHHHHhcccccCCccEEEEc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQP-LEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~~~-~gi~v~~-~l~ell~~~~~~~~~DVVIDf 113 (163)
||+|+||+|++|+.+++.|.++|.++++.+++++. .|++.....+.... .+..+.+ +.++ + .+.|+|+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE-L------SDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH-H------TTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH-h------hcCCEEEec
Confidence 79999999999999999999999999999999776 78887776542101 1223333 3333 3 399999966
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCC
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigtt 138 (163)
+......+++..+++.|+.||=-++
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCH
Confidence 6666678999999999998775333
No 26
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.20 E-value=1.1e-10 Score=99.12 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=79.1
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhccccc---CCccE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQS---KARAV 109 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~---~~~DV 109 (163)
+++||+|+| +|++|+.++..+.+.+++++++++|++... +..... ...|++. |++++++++ + .++|+
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es-~gla~A---~~~Gi~~~~~~ie~LL~----~~~~~dIDi 73 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPES-DGLARA---RRLGVATSAEGIDGLLA----MPEFDDIDI 73 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHHH---HHcCCCcccCCHHHHHh----CcCCCCCCE
Confidence 469999999 799999999998889999999999965321 111111 1467776 589999996 2 47999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHI 140 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~ 140 (163)
|+|+|.+..+.+++..++++|+++|..|+.+
T Consensus 74 Vf~AT~a~~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 74 VFDATSAGAHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred EEECCCHHHHHHHHHHHHHcCCeEEECCccc
Confidence 9999999999999999999999999998843
No 27
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.16 E-value=3.7e-10 Score=92.36 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=88.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
++|+++| +|.+|+.+++.+.+- -++++++++|+.. +++.++.. ..+....+++|++++ .+|+++++.
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA 68 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence 5899999 699999999998754 4699999999753 23333321 223333489999984 999999999
Q ss_pred CchhHHHHHHHHHHcCCcEEEeCCC-C-CHHHHHHHHHHhhhcC
Q 031216 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKAS 156 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vVigttg-~-~~e~~~~L~~~A~~~~ 156 (163)
.|+++.+|+..++++|+++++..+| | +++..+++.++|+..+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~ 112 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGG 112 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCC
Confidence 9999999999999999999998886 3 6778889999999854
No 28
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.14 E-value=4.5e-10 Score=108.12 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=91.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhccCCCCCC---cce-eCCHHHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPLE---IPV-MSDLTMV 97 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~e------------Lvgvid~~~~g~~~~~l~g~~~~~g---i~v-~~~l~el 97 (163)
+|.||+|+|| |+||+.+++.+.+.++.+ ++.++|... .++..+... ..+ +.+ +.|.+++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~--~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEG--IENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHh--cCCCceEEeecCCHHHH
Confidence 5789999995 999999999999999887 788888543 222333210 012 444 6788887
Q ss_pred HhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (163)
.+.+ .++|+||.++++..+.+.++.|+++|+|+|+.+ ++.++..+|.+.|+++++.+-
T Consensus 643 ~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m 700 (1042)
T PLN02819 643 LKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITIL 700 (1042)
T ss_pred HHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEE
Confidence 7522 369999999988889999999999999999977 788889999999999998763
No 29
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.11 E-value=6e-10 Score=95.74 Aligned_cols=100 Identities=19% Similarity=0.123 Sum_probs=73.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+|+||+|+||+|.+|+.+++.+.++|+++|++++++...|+.+.+..+ .. ......++++++... .++|+|+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~~-----~~vD~Vf~ 74 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLR-GLVDLVLEPLDPEIL-----AGADVVFL 74 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccc-cccCceeecCCHHHh-----cCCCEEEE
Confidence 478999999999999999999999999999999986555555444322 10 000123556655432 47999997
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg 139 (163)
++.+..+.+++..++++|++||--...
T Consensus 75 alP~~~~~~~v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 75 ALPHGVSMDLAPQLLEAGVKVIDLSAD 101 (343)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEECCcc
Confidence 777777789999999999998864443
No 30
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=99.03 E-value=2.2e-09 Score=90.35 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=96.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE-EE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-VI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV-VI 111 (163)
-+++.++| +|..|...++.+..+|+++|||+.++. +.|+|++++.|.. +.++...++++..++ ..+|. +.
T Consensus 2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlA-----tl~~~~~y 74 (350)
T COG3804 2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLA-----TLADAVIY 74 (350)
T ss_pred CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeeccccccee-----ccccceee
Confidence 37899999 899999999999999999999999953 5799999999987 688888899998876 45554 44
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCC------CCCHHHHHHHHHHhhhcCe-EEcC
Q 031216 112 DFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASM-VSTG 161 (163)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigtt------g~~~e~~~~L~~~A~~~~V-v~tg 161 (163)
+.-.|. .+...+++.+|++||.--+ ...+|..+++.++|+++|. .++|
T Consensus 75 ~~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~g 129 (350)
T COG3804 75 APLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHG 129 (350)
T ss_pred ecccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEe
Confidence 444563 7777889999999886422 3578999999999999998 5554
No 31
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.01 E-value=3.1e-09 Score=91.08 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=84.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhccCCCC--CCcceeC--CHHHHHh
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG 99 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~-------~~~eLvgvid~~-----~~g~~~~~l~g~~~~--~gi~v~~--~l~ell~ 99 (163)
+||+|+| +|.+|+.+++.+.+. .+++++++.|+. ..|-++.++.....+ ......+ ++++++.
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 5899999 699999999998764 578999999954 234444443211101 0011112 6778775
Q ss_pred cccccCCccEEEEccCc-h---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe--EEcCC
Q 031216 100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM--VSTGS 162 (163)
Q Consensus 100 ~~~~~~~~DVVIDfT~p-~---~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V--v~tg~ 162 (163)
.++|+|||+|.. + ....+...++++|+|||+..-+.-....++|.++|+++++ .|.++
T Consensus 80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eat 143 (326)
T PRK06392 80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEAT 143 (326)
T ss_pred -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeee
Confidence 589999999942 2 2467889999999999987765445677899999998754 44444
No 32
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=98.95 E-value=4.4e-09 Score=86.13 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=72.6
Q ss_pred CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216 60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 60 ~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg 139 (163)
+++|++++|+.. .+..++.. .+++++|+|+++++. .++|+|+.+|++..+.+++..++++|+|+++.+++
T Consensus 1 ~~eLvaV~D~~~--e~a~~~a~---~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNP--KDAKELAE---RCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCH--HHHHHHHH---HhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 478999999653 22233332 456788999999986 48999999999999999999999999999999985
Q ss_pred -C-CHHHHHHHHHHhhhcCe
Q 031216 140 -I-QLETVSALSAFCDKASM 157 (163)
Q Consensus 140 -~-~~e~~~~L~~~A~~~~V 157 (163)
+ +.++.++|.++|++.|.
T Consensus 71 Alad~e~~~~l~~aA~~~g~ 90 (229)
T TIGR03855 71 ALADRELRERLREVARSSGR 90 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCC
Confidence 4 67899999999999764
No 33
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.80 E-value=5.4e-08 Score=84.12 Aligned_cols=125 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhccCCC-CCCc--ceeCCHHHH
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV 97 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~~-----~g~~~~~l~g~~~-~~gi--~v~~~l~el 97 (163)
+++|+++| .|.+|+.+++.+.+.. +++|+++++++. .|-+..+++.... .... ....+.++.
T Consensus 2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 58999999 7999999999987543 678999998531 1333333221100 0000 012233443
Q ss_pred HhcccccCCccEEEEccCc-----hhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe--EEcCCC
Q 031216 98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM--VSTGSV 163 (163)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V--v~tg~~ 163 (163)
+.. ..++|||||+|.. +...++++.++++|+|||...-+.-....++|.++|+++++ .|.+||
T Consensus 81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasV 150 (346)
T PRK06813 81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGAT 150 (346)
T ss_pred hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeee
Confidence 321 1268999999854 34578999999999999987776555667899999998654 444443
No 34
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.77 E-value=6.8e-08 Score=83.22 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=66.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhcc-CCCCCCcceeC--CHHHHHhcccccCCccEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g-~~~~~gi~v~~--~l~ell~~~~~~~~~DVVI 111 (163)
+||+|+||+|.+|+++++.+.++|+++++++++++ ..|+.+.+..+ +....+. .+. +.+++.. ++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~~~~~~~~~~------~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDL-NLEPIDEEEIAE------DADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCc-eeecCCHHHhhc------CCCEEE
Confidence 58999999999999999999999999999887743 35665554332 1000011 233 4455442 799999
Q ss_pred EccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216 112 DFTDASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vVigtt 138 (163)
-++....+.+++..++++|++||--..
T Consensus 74 ~alP~~~s~~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 74 LALPHGVSAELAPELLAAGVKVIDLSA 100 (346)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEeCCh
Confidence 444444557888999999999885443
No 35
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.76 E-value=1.2e-07 Score=67.33 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=70.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
++.||+|+|+ |++|+.++....+..++++++++|... .+.++. -.++|+|++++++.+. .++|+.|.+
T Consensus 2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~~-----i~gipV~~~~~~l~~~----~~i~iaii~ 69 (96)
T PF02629_consen 2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGKE-----IGGIPVYGSMDELEEF----IEIDIAIIT 69 (96)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTSE-----ETTEEEESSHHHHHHH----CTTSEEEEE
T ss_pred CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCcE-----ECCEEeeccHHHhhhh----hCCCEEEEE
Confidence 5689999995 999999887777889999999999543 122221 3479999999999874 249998877
Q ss_pred cCchhHHHHHHHHHHcCCcEEE
Q 031216 114 TDASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVi 135 (163)
.+++.+.+.+..+++.|++.|.
T Consensus 70 VP~~~a~~~~~~~~~~gIk~i~ 91 (96)
T PF02629_consen 70 VPAEAAQEVADELVEAGIKGIV 91 (96)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEE
Confidence 7777788999999999988775
No 36
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.73 E-value=8.9e-08 Score=82.43 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=69.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhccCCC-----C--CCccee-CCHHHHHhcccccC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQ-----P--LEIPVM-SDLTMVLGSISQSK 105 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv-id~~~~g~~~~~l~g~~~-----~--~gi~v~-~~l~ell~~~~~~~ 105 (163)
|+||+|+|++|.+|+++++.+.++|+++|+++ .++...|++..++.+... . ....+. .++++ +.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~------ 75 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD------ 75 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc------
Confidence 58999999999999999999999999999998 444456766654432100 0 112222 24444 32
Q ss_pred CccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216 106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt 138 (163)
++|+|++++......+++..+.+.|+.+|.-+.
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence 899999776666668888888899999886443
No 37
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.73 E-value=8.3e-08 Score=82.39 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=67.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhccC------CCCCCcceeCCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDM------EQPLEIPVMSDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g~------~~~~gi~v~~~l~ell~~~~~~~~~D 108 (163)
+||+|+|++|+||+.+++.+.++++++|++++++. ..|++..++... .....-..+.++++... .++|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~D 75 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS-----KDVD 75 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh-----ccCC
Confidence 58999999999999999999999999999998753 456666544321 00000012223332222 3899
Q ss_pred EEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216 109 VVIDFTDASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 109 VVIDfT~p~~~~~~~~~al~~G~~vVi 135 (163)
+|+.++.+..+.++...+.+.|+++|.
T Consensus 76 vVf~a~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 76 IVFSALPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 999777667778899999999999885
No 38
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.69 E-value=1.6e-07 Score=80.85 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=80.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhccCCCCCC-cceeCCH-----HHHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDL-----TMVL 98 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~---------~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~v~~~l-----~ell 98 (163)
+++||+|+| .|.+|+.+++.+.++ -+++++++.+++..-.+ .+- ..+ ....+++ .+++
T Consensus 2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLD----LLNAEVWTTDGALSLGDEVL 74 (333)
T ss_pred ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--ccc----ccchhhheecccccccHhhh
Confidence 468999999 799999999999875 47899999996421111 000 111 2223444 4444
Q ss_pred hcccccCCccEEEEccCc--hhH--HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216 99 GSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (163)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V 157 (163)
. +..+|+|++.+.. +.. .++.+.++++|+|||...-..-.....+|.++|+++++
T Consensus 75 ~----~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~ 133 (333)
T COG0460 75 L----DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGV 133 (333)
T ss_pred c----cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCC
Confidence 4 2799999998743 333 48999999999999987776656678999999999773
No 39
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=98.64 E-value=2.5e-07 Score=80.89 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=68.0
Q ss_pred eeeccCCCC-CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHH-Hhcc
Q 031216 24 FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSI 101 (163)
Q Consensus 24 ~~~~~~~~~-~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~el-l~~~ 101 (163)
+++.+..+- .+++||+|+||+|+.|+++++.+.++|+++|+.+..+...|+.+.+............+.++++. +
T Consensus 26 ~~~~~~~~~~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~--- 102 (381)
T PLN02968 26 VSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF--- 102 (381)
T ss_pred cccCCCccccccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh---
Confidence 444444333 35679999999999999999999999999999988765556543332110001112222334433 3
Q ss_pred cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216 102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt 137 (163)
.+.|+|+ ++.|+.. .+++.. ++.|+.||-=+
T Consensus 103 ---~~~DvVf-~Alp~~~s~~i~~~-~~~g~~VIDlS 134 (381)
T PLN02968 103 ---SDVDAVF-CCLPHGTTQEIIKA-LPKDLKIVDLS 134 (381)
T ss_pred ---cCCCEEE-EcCCHHHHHHHHHH-HhCCCEEEEcC
Confidence 3799999 6667655 455555 57888776533
No 40
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.62 E-value=7.8e-07 Score=76.23 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=62.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVI 111 (163)
|+||+|+||+|+.|+++++.+.+ +|.++|+++...+..|+... +. ...+.+ .+++ ..+ ..+|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~----g~~i~v-~d~~~~~~------~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FK----GKELKV-EDLTTFDF------SGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eC----CceeEE-eeCCHHHH------cCCCEEE
Confidence 57999999999999999999998 79999999877655565433 11 112333 3333 233 3799999
Q ss_pred EccCchhHHHHHHHHHHcCCcEE
Q 031216 112 DFTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vV 134 (163)
.++......+++...+++|+.||
T Consensus 69 ~A~g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred ECCChHHHHHHHHHHHhCCCEEE
Confidence 44444445788888999999665
No 41
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.58 E-value=1.3e-06 Score=74.73 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+..||.|-|.+|+-|+.|.+...+. +-++|+.+.+..-|.. +. ..|+|+|++++|+.+. ..+|+.+.|
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~---v~----~~Gvpvy~sv~ea~~~----~~~D~avI~ 95 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTT---HL----KHGLPVFATVKEAKKA----TGADASVIY 95 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCce---Ee----cCCccccCCHHHHhcc----cCCCEEEEe
Confidence 3479999999999999999998865 8899999987554432 11 1278999999999863 459999989
Q ss_pred cCchhHHHHHHHHHHcCCcEEEe-CCCCCHHHHHHHHHHhh-hcCeEEc
Q 031216 114 TDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMVST 160 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVig-ttg~~~e~~~~L~~~A~-~~~Vv~t 160 (163)
.+|..+.+.+..|.++|++.++- |.|+...+..+|+++++ +.++..-
T Consensus 96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rli 144 (317)
T PTZ00187 96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLI 144 (317)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEE
Confidence 99999999999999999888544 55887766667777764 4565443
No 42
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.58 E-value=4.3e-07 Score=78.20 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH-HHhcccccCCccE
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV 109 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~--~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e-ll~~~~~~~~~DV 109 (163)
++|+||+|+||+|..|+++++.+. .+|..+|+.+.+....|+.+. +.+ .... +.++++ .+. ++|+
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~-~~~~~~~~~~------~vD~ 69 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLR-VREVDSFDFS------QVQL 69 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceE-EeeCChHHhc------CCCE
Confidence 357999999999999999999999 689999999888666665544 111 1122 222222 233 8999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEE
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vV 134 (163)
|+-++.+....+++..+.++|+.||
T Consensus 70 vFla~p~~~s~~~v~~~~~~G~~VI 94 (336)
T PRK05671 70 AFFAAGAAVSRSFAEKARAAGCSVI 94 (336)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCeEE
Confidence 9955544555788899999999887
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.58 E-value=3.1e-07 Score=79.16 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=68.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC--CCccee-CCHHHHHhcccccCCccEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVM-SDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~--~gi~v~-~~l~ell~~~~~~~~~DVV 110 (163)
+|+||+|+|++|+.|.++++.+..||++|+..+..+...|+.+.+..... . .+.+.. -+.+++.. .++|+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l-~g~~~l~~~~~~~~~~~~-----~~~Dvv 74 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNL-RGLVDLPFQTIDPEKIEL-----DECDVV 74 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCccc-ccccccccccCChhhhhc-----ccCCEE
Confidence 47999999999999999999999999999665555555788777765421 1 111111 23444422 479999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEE
Q 031216 111 IDFTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vV 134 (163)
|-+++.....+.+...++.|++||
T Consensus 75 FlalPhg~s~~~v~~l~~~g~~VI 98 (349)
T COG0002 75 FLALPHGVSAELVPELLEAGCKVI 98 (349)
T ss_pred EEecCchhHHHHHHHHHhCCCeEE
Confidence 966655556899999999999965
No 44
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=98.57 E-value=8e-07 Score=75.98 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=66.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+|+||+|+||+|..|+++++.+.+||.++|+.+..+.. .+. .+.++.+ .++|+|+ +
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~---------------~~~~~~~------~~~DvvF-l 56 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA---------------AARRELL------NAADVAI-L 56 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc---------------cCchhhh------cCCCEEE-E
Confidence 47899999999999999999999999999998876431 110 1223344 3799999 5
Q ss_pred cCchhH-HHHHHHHHHcCCcEE-------------EeCCCCCHHHHHHHH
Q 031216 114 TDASTV-YDNVKQATAFGMRSV-------------VYVPHIQLETVSALS 149 (163)
Q Consensus 114 T~p~~~-~~~~~~al~~G~~vV-------------igttg~~~e~~~~L~ 149 (163)
+.|+.. .+++..+.+.|+.|| .|-|+++.++.++|+
T Consensus 57 alp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~ 106 (313)
T PRK11863 57 CLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA 106 (313)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh
Confidence 556554 788888889999877 344455555555543
No 45
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.57 E-value=7.7e-07 Score=68.50 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=71.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|.||+++| .|.||+.+++.+. ..++++. +.|+.. ....++. ..++...++++++.+ ..|+|+-+.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence 78999999 7999999999997 5689987 578542 2333443 346778899999986 779988655
Q ss_pred Cchh-HHHHHHH--H---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 115 DAST-VYDNVKQ--A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 115 ~p~~-~~~~~~~--a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
.+.. +.+.+.. . +..|. +++-.+..++++..++.+..++.++-|
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERLAAKGVRY 115 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred ccchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhhhhcccee
Confidence 4433 3444332 2 33444 455566778899999999998887765
No 46
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.57 E-value=4.9e-07 Score=69.52 Aligned_cols=99 Identities=22% Similarity=0.274 Sum_probs=60.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCC-------------------Cccee--CCH
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-------------------EIPVM--SDL 94 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~-------------------gi~v~--~~l 94 (163)
+||+|+| .|+||+.+++.+...++++|+++.|... .+...-++..++.. .++++ .++
T Consensus 1 ikv~I~G-~GriGr~v~~~~~~~~~~~lvai~d~~~-~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGING-FGRIGRLVLRALLERPDIEVVAINDLTD-PETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeecCCC-HHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence 5899999 5999999999999899999999998410 01111111000000 11222 344
Q ss_pred HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCCC
Q 031216 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH 139 (163)
Q Consensus 95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigttg 139 (163)
+++... +..+|+|||+|-.-...+.+...++.| +.||++.|.
T Consensus 79 ~~~~w~---~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~ 121 (149)
T smart00846 79 ANLPWK---ELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA 121 (149)
T ss_pred HHCccc---ccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence 444321 247899999974434445555667777 667776663
No 47
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=98.56 E-value=1.6e-06 Score=74.93 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCcc
Q 031216 32 PQSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARA 108 (163)
Q Consensus 32 ~~~~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~D 108 (163)
+..++||+|+||+|+.|+++++.+.+ +|..+|..+...+..|+.... - .... .+.+++ +.+. ++|
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~----~~~~-~v~~~~~~~~~------~~D 71 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-E----GRDY-TVEELTEDSFD------GVD 71 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-c----Ccee-EEEeCCHHHHc------CCC
Confidence 34568999999999999999999998 899999988776566665443 1 1122 233333 3443 799
Q ss_pred EEEEccCchhH-HHHHHHHHHcCCcEE
Q 031216 109 VVIDFTDASTV-YDNVKQATAFGMRSV 134 (163)
Q Consensus 109 VVIDfT~p~~~-~~~~~~al~~G~~vV 134 (163)
+|+ |+.|+.. .+++..+.+.|+.||
T Consensus 72 ~vf-~a~p~~~s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 72 IAL-FSAGGSISKKFGPIAVDKGAVVV 97 (344)
T ss_pred EEE-ECCCcHHHHHHHHHHHhCCCEEE
Confidence 999 6666654 788888889999887
No 48
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.55 E-value=6.8e-07 Score=75.17 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=96.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+..||.|-|.+|++|..|.+.+.+. +.++|+.+.+..-|.. -.+.|||++++|++.+ ..+|+-+.|
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~ 72 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIF 72 (293)
T ss_pred CCCeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEe
Confidence 3468999999999999999999987 9999999887544431 3468999999999985 789998889
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHHhhhcCeEEcC
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
-+|..+.+-+..|+.+|+..|+--| +....+--++.+.+++.++..-|
T Consensus 73 Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG 121 (293)
T COG0074 73 VPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIG 121 (293)
T ss_pred cCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEEC
Confidence 9999999999999999988876555 88888888999999998877655
No 49
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=98.55 E-value=2.1e-07 Score=71.79 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=64.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhc--c--CC-CCCCccee--CCH
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVC--D--ME-QPLEIPVM--SDL 94 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--------------~g~~~~~l~--g--~~-~~~gi~v~--~~l 94 (163)
+||+|.| .||+||.++|.+...+++||+++-|... .|.-..++. + +. ....+.++ .++
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 6999999 7999999999999999999999998431 111111110 0 00 00112222 333
Q ss_pred HHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCCC
Q 031216 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH 139 (163)
Q Consensus 95 ~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigttg 139 (163)
+++-.. +..+|+|+|+|-.-...+.+...+++| +.||++.|.
T Consensus 80 ~~i~W~---~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~ 122 (151)
T PF00044_consen 80 EEIPWG---ELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPS 122 (151)
T ss_dssp GGSTHH---HHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-
T ss_pred cccccc---cccccEEEeccccceecccccccccccccceeecccc
Confidence 333221 247999999997777777777888888 556665553
No 50
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.55 E-value=2.6e-07 Score=79.60 Aligned_cols=94 Identities=21% Similarity=0.172 Sum_probs=68.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCC------------CCCCcceeCCHHHHHhccccc
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~------------~~~gi~v~~~l~ell~~~~~~ 104 (163)
|||+| +|++|+.+++.+...++++|+++.|.+.. ...+..+.+.. ...++.++.++++++.
T Consensus 1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~----- 74 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE----- 74 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence 68999 69999999999988999999999994321 00111211110 1335667789999984
Q ss_pred CCccEEEEccCchhHHHHHHHHHHcCCc-EEEeCC
Q 031216 105 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP 138 (163)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigtt 138 (163)
++|+|+++|....+..+....++.|.+ ++++-+
T Consensus 75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 799999998777778888888888854 455544
No 51
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.52 E-value=2.9e-06 Score=71.85 Aligned_cols=114 Identities=16% Similarity=0.258 Sum_probs=86.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.+-||.|+|.+|++|+.+.+.+.+. +.+.+..+.+.. + ..+ -.|++.|.+++++.+. ..+|+++.+
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~--~~~------v~G~~~y~sv~dlp~~----~~~DlAvi~ 72 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-G--GTT------VLGLPVFNTVAEAVEA----TGANASVIY 72 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-C--CCe------EeCeeccCCHHHHhhc----cCCCEEEEE
Confidence 4578999999999999999999865 444554555431 0 012 2477899999999751 129999978
Q ss_pred cCchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 114 TDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~v-Vigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.+++.+.+.++.|.+.|++. ||-+.||..++.++|.++|++.++-.-|
T Consensus 73 vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 73 VPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 88888899999999999766 5666799876667999999998876544
No 52
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=98.52 E-value=6.6e-07 Score=77.14 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI 111 (163)
+.+||+|+||+|..|+++++.+.+ +|..+|..+.+.+..|+.+. +. .....+. ++++... .++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~----~~~~~v~-~~~~~~~-----~~~Dvvf 71 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FG----GKSVTVQ-DAAEFDW-----SQAQLAF 71 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-EC----CcceEEE-eCchhhc-----cCCCEEE
Confidence 458999999999999999999998 89999999877666777665 21 1134443 5655432 3799988
Q ss_pred EccCchhH-HHHHHHHHHcCCcEE
Q 031216 112 DFTDASTV-YDNVKQATAFGMRSV 134 (163)
Q Consensus 112 DfT~p~~~-~~~~~~al~~G~~vV 134 (163)
|+.|+.. .+++..+.++|+.||
T Consensus 72 -~a~p~~~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 72 -FVAGREASAAYAEEATNAGCLVI 94 (336)
T ss_pred -ECCCHHHHHHHHHHHHHCCCEEE
Confidence 6656555 688899999999877
No 53
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=98.51 E-value=3.2e-06 Score=71.47 Aligned_cols=114 Identities=16% Similarity=0.273 Sum_probs=88.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+.-||.|.|.+|++|+.+.+.+... +..+++.+.+.. +. .+ -.|++.|.+++++.+. ..+|+++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~-~~--~~------v~G~~~y~sv~dlp~~----~~~Dlavi~ 70 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFDSVKEAVEE----TGANASVIF 70 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC-Cc--ce------ecCeeccCCHHHHhhc----cCCCEEEEe
Confidence 4568999999999999999998754 666887776541 11 12 2478899999998751 138999978
Q ss_pred cCchhHHHHHHHHHHcCCcEE-EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 114 TDASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.+++.+.+.++.|.+.|++.+ +-+.||.+.+.++|.++|++.++-+-|
T Consensus 71 vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 71 VPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 888888999999999997554 656799777668999999999887654
No 54
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=5.9e-07 Score=77.06 Aligned_cols=102 Identities=24% Similarity=0.224 Sum_probs=69.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec-C-----------C-CCcchh------hhccCCCCCCcceeCCH
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS-H-----------S-VGEDIG------MVCDMEQPLEIPVMSDL 94 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~-~-----------~-~g~~~~------~l~g~~~~~gi~v~~~l 94 (163)
|+||+|.| .||+||.++|++.+.+ ++|++|+-|. + . .|.=.+ ..+-+ ...+|+++.+.
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER 78 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence 68999999 7999999999999999 7999999992 1 0 111000 10111 13467777655
Q ss_pred H-HHHhcccccCCccEEEEccCchhHHHHHHHHHHcC--CcEEEeCCCC
Q 031216 95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHI 140 (163)
Q Consensus 95 ~-ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G--~~vVigttg~ 140 (163)
+ +.+.- .+..+|+|+|+|.--...+.+...+++| +.|+++-|+-
T Consensus 79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~ 125 (335)
T COG0057 79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK 125 (335)
T ss_pred ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCC
Confidence 5 44432 1346789999996666678888778786 7777776654
No 55
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.48 E-value=9.4e-07 Score=64.59 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=59.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEEcc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVIDfT 114 (163)
||+++|++|++|+.+++.+.++++++++++++++ ..|+++....+ ...-.++.+++ +.++. .+.|+|+.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence 6899998899999999999999999999997743 34555443321 11001112222 11111 4899999666
Q ss_pred CchhHHHH---HHHHHHcCCcEEE
Q 031216 115 DASTVYDN---VKQATAFGMRSVV 135 (163)
Q Consensus 115 ~p~~~~~~---~~~al~~G~~vVi 135 (163)
.++.+.+. +..+++.|+.+|=
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD 97 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVID 97 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEE
Confidence 66666664 4555688988773
No 56
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.46 E-value=1.4e-06 Score=82.84 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=80.1
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC-----CCCcchhhhccCCCCCCcceeCCHHHHHhc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~--------~~eLvgvid~~-----~~g~~~~~l~g~~~~~gi~v~~~l~ell~~ 100 (163)
++++|+++| .|.+|+.+++.+.+.. +++++++.++. ..|-+...+.... . ...-..+.+.+++.
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREEL-A-EAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHH-h-hccCCCCHHHHHHH
Confidence 679999999 7999999999987543 67889988853 1233332221100 0 00000123332221
Q ss_pred cc-ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCC---HHHHHHHHHHhhhcCeEE
Q 031216 101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMVS 159 (163)
Q Consensus 101 ~~-~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~---~e~~~~L~~~A~~~~Vv~ 159 (163)
+. .+.+.||+||+|.-.....+...++++|+|||...-+.- .++.++|.++|+++++-+
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~ 603 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKF 603 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeE
Confidence 11 112569999999766667777899999999998776532 268899999999986543
No 57
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=98.45 E-value=5.5e-06 Score=70.47 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=87.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.-||.|.|.+|+.|..+.+..... +-++++.+.+..-+ .+ -.|++.|.+++++.+. .++|+++.+.
T Consensus 12 ~~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~---~~------i~G~~~y~sv~dlp~~----~~~DlAvI~v 77 (300)
T PLN00125 12 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---TE------HLGLPVFNTVAEAKAE----TKANASVIYV 77 (300)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC---ce------EcCeeccCCHHHHhhc----cCCCEEEEec
Confidence 368999999999999999998876 89999999864211 12 2478899999999851 2389999788
Q ss_pred CchhHHHHHHHHHHcCCc-EEEeCCCCCHHH-HHHHHHHhhhcCeEEcC
Q 031216 115 DASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMVSTG 161 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~-vVigttg~~~e~-~~~L~~~A~~~~Vv~tg 161 (163)
.+..+.+.++.|.++|++ +|+-+.||.+.. .+.+.++|++.++-.-|
T Consensus 78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviG 126 (300)
T PLN00125 78 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIG 126 (300)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEEC
Confidence 888889999999999988 556566886553 35566678988875443
No 58
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=98.45 E-value=2.4e-06 Score=73.01 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
-||+|+|++|++|.+++|.+..||++||+.+..+.. +. + .+.++++. ++|+|+ |+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~~----~------~~~~~~~~------~~D~vF-lal 57 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------KD----A------AERAKLLN------AADVAI-LCL 57 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------cC----c------CCHhHhhc------CCCEEE-ECC
Confidence 489999999999999999999999999999876532 00 0 13445543 799988 555
Q ss_pred chh-HHHHHHHHHHcCCcEE
Q 031216 116 AST-VYDNVKQATAFGMRSV 134 (163)
Q Consensus 116 p~~-~~~~~~~al~~G~~vV 134 (163)
|+. ..+++..+.+.|+.||
T Consensus 58 p~~~s~~~~~~~~~~g~~VI 77 (310)
T TIGR01851 58 PDDAAREAVSLVDNPNTCII 77 (310)
T ss_pred CHHHHHHHHHHHHhCCCEEE
Confidence 554 4788888888999776
No 59
>PLN02700 homoserine dehydrogenase family protein
Probab=98.44 E-value=1.5e-06 Score=75.96 Aligned_cols=124 Identities=19% Similarity=0.297 Sum_probs=75.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC---------CCcchhhhcc---CC-CCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHS---------VGEDIGMVCD---ME-QPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~--------~~eLvgvid~~~---------~g~~~~~l~g---~~-~~~gi~v~-- 91 (163)
.++|+|+| .|.+|+.+++++.+.. ++.++|+.|++. .|.+...+.. .. ......-+
T Consensus 3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 48999999 6999999999977654 367889988531 1333322211 00 01111000
Q ss_pred -----------------CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216 92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (163)
Q Consensus 92 -----------------~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~ 154 (163)
.+..+.+.. ...+|+||+|......++...++++|+|||...-+.-....+++.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~ 157 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAH 157 (377)
T ss_pred ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHc
Confidence 112232321 35699999998777789999999999999987664333334445555543
Q ss_pred -cCeEEcCCC
Q 031216 155 -ASMVSTGSV 163 (163)
Q Consensus 155 -~~Vv~tg~~ 163 (163)
..+.|.++|
T Consensus 158 ~~~~~yEatV 167 (377)
T PLN02700 158 PRRIRHESTV 167 (377)
T ss_pred CCeEEEEeee
Confidence 445555543
No 60
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.40 E-value=2.4e-06 Score=81.13 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=82.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhccCCCCCCcceeCCHHHHHh
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLG 99 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~---------~~eLvgvid~~~-----~g~~~~~l~g~~~~~gi~v~~~l~ell~ 99 (163)
+.++|+++| .|.+|+.+++.+.++. +++++++++++. .|-+...+.... .......+++.+++
T Consensus 457 ~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~e 533 (810)
T PRK09466 457 KRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFF--DDEAVEWDEESLFL 533 (810)
T ss_pred ceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhH--HhhcCCccHHHHHH
Confidence 569999999 7999999999987543 578899998531 232333322110 00111123332222
Q ss_pred ccc-ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCC---CHHHHHHHHHHhhhcCeE--EcCCC
Q 031216 100 SIS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMV--STGSV 163 (163)
Q Consensus 100 ~~~-~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~---~~e~~~~L~~~A~~~~Vv--~tg~~ 163 (163)
.+. .+...+|+||+|..+....+...++++|+|||...-.+ ..+..++|.++|+++++- |.+||
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV 603 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATV 603 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEecee
Confidence 111 01234699999977767777779999999999877643 347889999999997654 44443
No 61
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.39 E-value=3.3e-06 Score=62.14 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=72.1
Q ss_pred eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 37 rV~VvGa~---G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+|+|+|++ ++.|..+++.+.+ .+.++..+ +++. .+ -.|.+.|.++++ .. .++|+++-+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~~-----~~------i~G~~~y~sl~e-~p-----~~iDlavv~ 62 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPKG-----GE------ILGIKCYPSLAE-IP-----EPIDLAVVC 62 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STTC-----SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCCc-----eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence 69999987 8899999999987 78888754 3221 12 236788999998 44 499999989
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
+.|+...+.++.+.+.|++-|+-.++ +..+++.++|++.++-+-|
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999998887777 3456788888888876653
No 62
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.37 E-value=2.1e-06 Score=75.40 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=78.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhhcc--CC-CCCCcceeCCHHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCD--ME-QPLEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g--~~-~~~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
|+||.|+|+ |++|+.++..+.++.+.++..+ |++.. -.++.+..+ ++ -..++.-.+.+.+++. +.|+|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~V 72 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLV 72 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEE
Confidence 689999995 9999999999888887888854 44321 112222110 00 0112222245566775 66999
Q ss_pred EEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 111 IDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
|++-.|.-....+++|+++|+++|- |+-..+. ..++.+.|+++|+..
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~yvD-ts~~~~~-~~~~~~~a~~Agit~ 119 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVDYVD-TSYYEEP-PWKLDEEAKKAGITA 119 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCCEEE-cccCCch-hhhhhHHHHHcCeEE
Confidence 9999888889999999999999876 4433333 388999999998653
No 63
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.34 E-value=3.8e-06 Score=67.49 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=64.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHH-HhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i-~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
...||+|+| +|.+|+.+++.+ ....+++++|++|.+.. ..+...+ ...+..++++++++.+ .++|+++.
T Consensus 83 ~~~rV~IIG-aG~iG~~l~~~~~~~~~g~~ivgv~D~d~~--~~~~~i~---g~~v~~~~~l~~li~~----~~iD~ViI 152 (213)
T PRK05472 83 RTWNVALVG-AGNLGRALLNYNGFEKRGFKIVAAFDVDPE--KIGTKIG---GIPVYHIDELEEVVKE----NDIEIGIL 152 (213)
T ss_pred CCcEEEEEC-CCHHHHHHHHhhhcccCCcEEEEEEECChh--hcCCEeC---CeEEcCHHHHHHHHHH----CCCCEEEE
Confidence 457999999 599999999864 24678999999996421 1111110 1112234677787763 67999996
Q ss_pred ccCchhHHHHHHHHHHcCCcEE-EeCC
Q 031216 113 FTDASTVYDNVKQATAFGMRSV-VYVP 138 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV-igtt 138 (163)
++++..+.+....++++|++.| ..+|
T Consensus 153 a~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 153 TVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred eCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 7766667788899999996544 4454
No 64
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=9.4e-06 Score=65.59 Aligned_cols=103 Identities=9% Similarity=0.054 Sum_probs=66.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
++||+|+| +|+||+.+++.+.+.. +.+-+.+.+++. .+....+.. .+++.++++++++++ ++|+||.
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~------~~DiVii 72 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQA---RYNVSTTTDWKQHVT------SVDTIVL 72 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHHH---HcCcEEeCChHHHHh------cCCEEEE
Confidence 47899999 6999999999987653 344232344321 112223321 346667889988875 8999998
Q ss_pred ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHH
Q 031216 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSAL 148 (163)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L 148 (163)
++.|..+.+.+..... .+..+|.-..|++.++++.+
T Consensus 73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~ 110 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEER 110 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHH
Confidence 8888777666654432 35555555558887765443
No 65
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.32 E-value=4.9e-06 Score=72.07 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV 109 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DV 109 (163)
+.+||+|+||+|..|+++++.+.++|+++ |..+...+..|+.+. +.+ ....+. -+.++ +. ++|+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~~------~~Di 71 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-FE------GVDI 71 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-hc------CCCE
Confidence 34899999999999999999999899999 666655556666542 211 133332 13333 32 7999
Q ss_pred EEEccCchhH-HHHHHHHHHcCCcEE
Q 031216 110 VIDFTDASTV-YDNVKQATAFGMRSV 134 (163)
Q Consensus 110 VIDfT~p~~~-~~~~~~al~~G~~vV 134 (163)
|+ |+.|... .+++..+.++|+.||
T Consensus 72 vf-~a~~~~~s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 72 AF-FSAGGEVSRQFVNQAVSSGAIVI 96 (347)
T ss_pred EE-ECCChHHHHHHHHHHHHCCCEEE
Confidence 88 6656554 788888999999887
No 66
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=98.30 E-value=9.7e-06 Score=69.80 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=61.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEEc
Q 031216 37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF 113 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~--~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVIDf 113 (163)
||+|+||+|+.|+++++.+.+ +|.++|+.+...+..|+... +.+ ... ++.+++ +.+ .++|+|+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~-~~~~~~~~~~------~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KEL-EVNEAKIESF------EGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeE-EEEeCChHHh------cCCCEEEEC
Confidence 689999999999999999988 79999987766555555443 111 112 233333 233 389999955
Q ss_pred cCchhHHHHHHHHHHcCCcEE
Q 031216 114 TDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV 134 (163)
+......+++..+++.|+.||
T Consensus 69 ~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 655566889999999999765
No 67
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.28 E-value=5.6e-06 Score=71.50 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=71.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCCcce----eCC---HHHHHhcccccCCccE
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPV----MSD---LTMVLGSISQSKARAV 109 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~gi~v----~~~---l~ell~~~~~~~~~DV 109 (163)
|+|+|+ |++|+.+++.+.++.+.+=+.+.|++. .++..+... . ...+.. ..| +++++. +.|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~------~~dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLL-GDRVEAVQVDVNDPESLAELLR------GCDV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHT------TSSE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHh------cCCE
Confidence 789997 999999999999998883344666542 122222210 0 111211 123 445553 7899
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
||++..|......++.|+++|+|.|- +.+-.+...++.+.|++.++..
T Consensus 71 Vin~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~ 118 (386)
T PF03435_consen 71 VINCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTA 118 (386)
T ss_dssp EEE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEE
T ss_pred EEECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEE
Confidence 99999888888999999999999887 4443456788888888877754
No 68
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=98.25 E-value=5.1e-06 Score=71.74 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=64.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchh-hh-------ccCCCCCCccee-
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIG-MV-------CDMEQPLEIPVM- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~-~l-------~g~~~~~gi~v~- 91 (163)
++||||+| .|+||+.+++.+.+.++++|+++.|+. ..|+-.+ ++ +-.. ...+.++
T Consensus 5 ~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~-g~~i~v~~ 82 (338)
T PLN02358 5 KIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFG 82 (338)
T ss_pred ceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEEC-CEEEEEEE
Confidence 58999999 699999999999888999999999842 1122110 01 0000 1123333
Q ss_pred -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi 135 (163)
.+++++-.. +..+|+|+++|-.....+.+...+++|...|+
T Consensus 83 ~~~p~~~~w~---~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi 124 (338)
T PLN02358 83 IRNPEDIPWG---EAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124 (338)
T ss_pred cCCcccCccc---ccCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence 334444221 24899999888888888999999999975554
No 69
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.24 E-value=1.3e-05 Score=55.77 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=59.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEEc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVIDf 113 (163)
||+++| +|+||..+++.+.+.. ..++.-+.+++. +...++.. ..++.++. +..++++ +.|+||.+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~------~advvila 68 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAK---EYGVQATADDNEEAAQ------EADVVILA 68 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHH---HCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHH---hhccccccCChHHhhc------cCCEEEEE
Confidence 799999 6999999999987542 277775556542 23333331 34555555 7888885 89999988
Q ss_pred cCchhHHHHHHHH--HHcCCcEEE
Q 031216 114 TDASTVYDNVKQA--TAFGMRSVV 135 (163)
Q Consensus 114 T~p~~~~~~~~~a--l~~G~~vVi 135 (163)
..|....+.+... ...++-+|.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 8888877766554 677777765
No 70
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=98.23 E-value=5.9e-06 Score=71.26 Aligned_cols=94 Identities=23% Similarity=0.145 Sum_probs=66.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------ccCCCCCCccee--C
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S 92 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l------~g~~~~~gi~v~--~ 92 (163)
++||+|.|+ |||||.+++.+.+.++++|+++.|.. ..|+-.+++ +-+. ...+.++ .
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~-g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVIN-GKRIRTTQNK 79 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEEC-CEEEEEEecC
Confidence 489999996 99999999999989999999999831 112211111 1000 1223343 3
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi 135 (163)
+++++-. .++|+|+++|-.....+.+...++.|..+|+
T Consensus 80 ~~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~ 117 (334)
T PRK08955 80 AIADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVV 117 (334)
T ss_pred ChhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEE
Confidence 6777665 3899999888788888999999999976665
No 71
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.22 E-value=1.7e-05 Score=65.09 Aligned_cols=102 Identities=10% Similarity=0.033 Sum_probs=65.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+|+||+|+| +|.||+.+++.+.+.. ...-+.+++++. +....+.. .+++.+.++.++++. ++|+||.
T Consensus 1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~~---~~g~~~~~~~~~~~~------~advVil 68 (267)
T PRK11880 1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALAE---EYGVRAATDNQEAAQ------EADVVVL 68 (267)
T ss_pred CCCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHHH---hcCCeecCChHHHHh------cCCEEEE
Confidence 378999999 6999999999987542 123345667542 12222221 235666778888764 8999997
Q ss_pred ccCchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHH
Q 031216 113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSA 147 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~-G~~vVigttg~~~e~~~~ 147 (163)
++.|....+.+...... +..||.-+.|.+.++.+.
T Consensus 69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~~ 104 (267)
T PRK11880 69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLER 104 (267)
T ss_pred EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHHH
Confidence 88777776766655443 455555555787665443
No 72
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.20 E-value=1.8e-05 Score=65.96 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=68.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
++||+|+| +|.||+.+++.+. ..+.++. ++|++. .+...+. ..++.+++++++++. ++|+||.+.
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLL-KAGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML 66 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence 46899999 6999999999987 4688876 467542 2222222 335566788998875 899999666
Q ss_pred CchhHHHHH-------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216 115 DASTVYDNV-------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (163)
Q Consensus 115 ~p~~~~~~~-------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~ 156 (163)
++....+.+ ...+..|.-+ +-++..++...++|.+..++.+
T Consensus 67 p~~~~~~~v~~~~~~~~~~~~~g~ii-id~st~~~~~~~~l~~~~~~~g 114 (296)
T PRK11559 67 PNSPHVKEVALGENGIIEGAKPGTVV-IDMSSIAPLASREIAAALKAKG 114 (296)
T ss_pred CCHHHHHHHHcCcchHhhcCCCCcEE-EECCCCCHHHHHHHHHHHHHcC
Confidence 544443333 2233445544 4455566777777777766554
No 73
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.13 E-value=1.8e-05 Score=69.15 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=58.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV 109 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DV 109 (163)
|+||+|+||+|..|+++++.+.+++++. ++...++ ..|.....+-+ ....+++ +.+. +. ++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence 6899999999999999999888899998 7774333 33333322222 1234443 2333 33 7999
Q ss_pred EEEccCchhH-HHHHHHHHHcCCc
Q 031216 110 VIDFTDASTV-YDNVKQATAFGMR 132 (163)
Q Consensus 110 VIDfT~p~~~-~~~~~~al~~G~~ 132 (163)
++ |+.|... .+++..+.++|++
T Consensus 69 vf-~a~~~~~s~~~~~~~~~aG~~ 91 (369)
T PRK06598 69 II-TCQGGDYTNEVYPKLRAAGWQ 91 (369)
T ss_pred EE-ECCCHHHHHHHHHHHHhCCCC
Confidence 88 7666655 6788889999975
No 74
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.12 E-value=5.1e-05 Score=63.79 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+++| .|+||+.+++.+.+ .+.+|+ ++|++. .....+. ..+...+++++++.+. ...+|+||.+..
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~---~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSK---LEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHh---CCCCCEEEEEec
Confidence 3899999 79999999999874 678887 578642 1222222 3456677899998752 013799886665
Q ss_pred chhH-HHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 116 ASTV-YDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 116 p~~~-~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
+... .+.+... ++.| .+|+-++..++++..++.+..++.++-|
T Consensus 69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHY 115 (299)
T ss_pred CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeE
Confidence 5423 3333332 3334 4666666555666677777776666543
No 75
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=98.11 E-value=1.8e-05 Score=69.46 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=75.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCC---c----------------chhhhccCCCCCCccee---
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---E----------------DIGMVCDMEQPLEIPVM--- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g---~----------------~~~~l~g~~~~~gi~v~--- 91 (163)
|.||+|+|++|.+|+.+++.+.++| .+++++++...... + ...++-......++.++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 5799999999999999999998776 79999998421100 0 00011000001123333
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (163)
Q Consensus 92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~ 156 (163)
+.+.++++ ..++|+|+....=....+....|+++|++|.+..-..-......|.+++++.+
T Consensus 81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g 141 (385)
T PRK05447 81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSG 141 (385)
T ss_pred hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcC
Confidence 23444444 36799999666555567778999999999998554433455567777777755
No 76
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.09 E-value=1.7e-05 Score=68.53 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=67.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh------ccCCCCCCccee--C
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV------CDMEQPLEIPVM--S 92 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l------~g~~~~~gi~v~--~ 92 (163)
++||||.| .||+||.+.|.+.+.++++++++-|.. ..|+=-+++ +-+ ....|.++ .
T Consensus 2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i-~g~~i~~~~~~ 79 (337)
T PTZ00023 2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMI-GSKKVHVFFEK 79 (337)
T ss_pred ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEE-CCeEEEEEeCC
Confidence 47999999 799999999998877899999987721 112100011 000 01234444 5
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
+++++-.. +.++|+|+++|-.....+.+...+++|...|+=+
T Consensus 80 dp~~lpW~---~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS 121 (337)
T PTZ00023 80 DPAAIPWG---KNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS 121 (337)
T ss_pred ChhhCCcc---ccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence 66666542 4689999988877778889999999997777534
No 77
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.08 E-value=2.3e-05 Score=66.42 Aligned_cols=109 Identities=12% Similarity=0.147 Sum_probs=64.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------ccCCCCCCcceeCCHHHHHhcccccCC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSKA 106 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l-------~g~~~~~gi~v~~~l~ell~~~~~~~~ 106 (163)
++||+|+| .|.||..++..+.+ .+.++. +++++.. .+.+... .+......+..++++++++. .
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~-~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~------~ 74 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAAS-KGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA------G 74 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHH-CCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc------C
Confidence 46999999 59999999999874 577766 4554311 1111110 01100112445678888764 8
Q ss_pred ccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHH--HHHHHHHhh
Q 031216 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCD 153 (163)
Q Consensus 107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~--~~~L~~~A~ 153 (163)
+|+||-+..+. ..+.+...++.+..+|.-++|+++++ ...+.+...
T Consensus 75 aD~Vi~~v~~~-~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~ 122 (328)
T PRK14618 75 ADFAVVAVPSK-ALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLE 122 (328)
T ss_pred CCEEEEECchH-HHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHH
Confidence 99998555444 44444455566777776677775443 344555443
No 78
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.08 E-value=3.6e-05 Score=63.13 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=66.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eL--vgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+||+++| +|+||+.+++.+.+. +.++ +.+.+++. ....++.. .. ++.++++.+++.. +.|+|+.
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~-g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVil 67 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTS-PADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFL 67 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhC-CCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEE
Confidence 4899999 699999999998754 4333 44555432 22223321 12 4567788888875 7899998
Q ss_pred ccCchhHHHHHHHH-HHcCCcEEEeCCCCCHHHHHHHH
Q 031216 113 FTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALS 149 (163)
Q Consensus 113 fT~p~~~~~~~~~a-l~~G~~vVigttg~~~e~~~~L~ 149 (163)
++.|....+.+... +..|..+|.-..+.+.++++.+.
T Consensus 68 av~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~ 105 (258)
T PRK06476 68 AVRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEWI 105 (258)
T ss_pred EeCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHh
Confidence 88877666665443 34566676655577777766554
No 79
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=67.15 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=67.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~-~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
|+||||+|++|..|+.+++.+.+ ++.++.+.++.+ +..|++..++.+ ..+.+-++..+...- +++|+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~----~~~~v~~~~~~~~~~----~~~Divf- 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGG----KSIGVPEDAADEFVF----SDVDIVF- 71 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccC----ccccCcccccccccc----ccCCEEE-
Confidence 58999999999999999999998 888986666664 456766455432 223333332222221 4799988
Q ss_pred ccCchh-HHHHHHHHHHcCCcEEEeCC
Q 031216 113 FTDAST-VYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 113 fT~p~~-~~~~~~~al~~G~~vVigtt 138 (163)
|+.+.. ..++...+.++|+.||--+.
T Consensus 72 ~~ag~~~s~~~~p~~~~~G~~VIdnsS 98 (334)
T COG0136 72 FAAGGSVSKEVEPKAAEAGCVVIDNSS 98 (334)
T ss_pred EeCchHHHHHHHHHHHHcCCEEEeCCc
Confidence 777654 47899999999988875444
No 80
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.05 E-value=8.4e-05 Score=62.46 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=69.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+++| +|.||+.+++.+.+ .+.++. +.|++. .....+. ..++.++++++++.+. ...+|+||-+..
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~---~~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAK---LPAPRVVWLMVP 68 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhh---cCCCCEEEEEec
Confidence 4899999 79999999999874 678876 467542 1222322 3466778899988752 014788885554
Q ss_pred ch-hHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 116 AS-TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 116 p~-~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
+. ...+.+ ...+..|. +|+-.+..+++...++.+.+++.++.|
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKGIHF 115 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence 43 223333 33344454 444444444556677777777777765
No 81
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.03 E-value=2.2e-05 Score=67.44 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=64.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccc------hhhhccCCCCCCccee--C
Q 031216 37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GED------IGMVCDMEQPLEIPVM--S 92 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~---~~~eLvgvid~~~~-------------g~~------~~~l~g~~~~~gi~v~--~ 92 (163)
||||+|+ |++||.++|.+.+. ++++++++.|.... |+= .+..+-+. ...+.++ .
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence 6999996 99999999998865 46999999883210 100 00000000 1123443 3
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP 138 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt 138 (163)
+++++... +..+|+|+++|-+....+.+..++++| +.|++..|
T Consensus 79 ~p~~~~w~---~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 79 TPEALPWR---ALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred Chhhcccc---ccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 66665432 258999998888888899999999999 55555544
No 82
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.01 E-value=6.9e-05 Score=61.40 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=64.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~----eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVI 111 (163)
+||+++| +|.||..+++.+.+. +. ++....+++. .....+. ..|+.+.++.+++.. +.|+||
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi 66 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII 66 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence 5899999 799999999998754 44 6553325432 1222222 356777788888764 889999
Q ss_pred EccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031216 112 DFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL 148 (163)
Q Consensus 112 DfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L 148 (163)
.+..|....+.+... +..+..+|.-+.+.+.++..++
T Consensus 67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~ 106 (266)
T PLN02688 67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEW 106 (266)
T ss_pred EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHH
Confidence 888777666665443 3345555544457776665543
No 83
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=98.00 E-value=9e-05 Score=64.02 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=82.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhccCCCCC-----
Q 031216 36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDMEQPL----- 86 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~---~~-------------------~~~eLvgvid~--~~~g~~~~~l~g~~~~~----- 86 (163)
+||+|+| -|+-.+.+++-+. +. .|+|+|+++|. +.+|+|+.+..-.. +.
T Consensus 1 irvai~G-vGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~-pN~t~~~ 78 (351)
T TIGR03450 1 VRVAIVG-VGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFAS-ENNTIKI 78 (351)
T ss_pred CeEEEEe-ccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcC-CCCceee
Confidence 6999999 5999999888653 11 16799999994 56788877654221 22
Q ss_pred ------Ccce-----eC------------------CHHHHHhcccccCCccEEEEccC---chhHHHHHHHHHHcCCcEE
Q 031216 87 ------EIPV-----MS------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 87 ------gi~v-----~~------------------~l~ell~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vV 134 (163)
++.| .+ |+-+.+. +.++||+|.+-+ -.+..-|+.+|++.|++.|
T Consensus 79 ~~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk----~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afV 154 (351)
T TIGR03450 79 ADVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALK----DAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFV 154 (351)
T ss_pred eccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHH----hcCCCEEEECCccchHHHHHHHHHHHHHcCCceE
Confidence 2221 12 2333344 479999997642 2344678899999999999
Q ss_pred EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 135 VYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 135 igttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
-++|.+... ..++.+.+++.++.+.|
T Consensus 155 N~~P~~ia~-~p~~a~~f~e~glPi~G 180 (351)
T TIGR03450 155 NALPVFIAS-DPEWAKKFTDAGVPIVG 180 (351)
T ss_pred eccCccccC-CHHHHHHHHHCCCCEec
Confidence 999976543 46788888888887766
No 84
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.00 E-value=0.0001 Score=61.50 Aligned_cols=110 Identities=9% Similarity=0.043 Sum_probs=69.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhccCCCCC-CcceeCCHHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~---~eLvgvid~~~~g~~~~~l~g~~~~~-gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
|.||+++| +|.||..+++.+.+... .++.+...+.. .....+.. .. ++.++.+.++++. ++|+|
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~--~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV 68 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSSSKN--EHFNQLYD---KYPTVELADNEAEIFT------KCDHS 68 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeCCcH--HHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence 57899999 69999999999876532 46664433221 11122211 12 3445678777764 89999
Q ss_pred EEccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 111 IDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
|.++.|..+.+.+... +..++.+|+-..|.+.++++++ ....+|+.
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~---~~~~~vvR 117 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TPGLQVSR 117 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCCCCEEE
Confidence 9777777776666544 4567778876668887765553 33335554
No 85
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.99 E-value=9.6e-05 Score=65.78 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred CeeEEEEcCC---CHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216 35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (163)
Q Consensus 35 ~irV~VvGa~---G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV 109 (163)
+-+|+|+|++ |++|..+++.+.+ .++ ++. .+.+.. .+ -.|+++|.+++++- ..+|+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~-~Vnp~~-----~~------i~G~~~~~sl~~lp------~~~Dl 67 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIY-PVNPKA-----GE------ILGVKAYPSVLEIP------DPVDL 67 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEE-EECCCC-----Cc------cCCccccCCHHHCC------CCCCE
Confidence 4679999987 7899999999874 444 443 333321 12 24688999999985 48999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEE-EeCCCCCH------HHHHHHHHHhhhcCeEEcC
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vV-igttg~~~------e~~~~L~~~A~~~~Vv~tg 161 (163)
++.++.|+.+.+.++.|.+.|++.+ +-+.||.+ +..++|.++|++.++-.-|
T Consensus 68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 9988889999999999999997755 54556643 2347899999998887654
No 86
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.95 E-value=2.5e-05 Score=62.67 Aligned_cols=103 Identities=24% Similarity=0.310 Sum_probs=72.5
Q ss_pred ccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecC--CCCcchhhhccCCCCCCccee--C
Q 031216 18 NVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--S 92 (163)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~-~~~~~eLvgvid~~--~~g~~~~~l~g~~~~~gi~v~--~ 92 (163)
||+--|=.|..+-.-.++.+++++|+ |++|++++..-- +..++++++++|.. ..|.. -.+++|+ +
T Consensus 67 nV~~L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~---------~~~v~V~~~d 136 (211)
T COG2344 67 NVKYLRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK---------IGDVPVYDLD 136 (211)
T ss_pred cHHHHHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc---------cCCeeeechH
Confidence 34333323334444557899999995 999999998743 47899999999953 23322 2246776 6
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEE
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVV 135 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVi 135 (163)
++++.+.+ .++|+.| .|.|..++ +.+....++|+.-|.
T Consensus 137 ~le~~v~~----~dv~iai-LtVPa~~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 137 DLEKFVKK----NDVEIAI-LTVPAEHAQEVADRLVKAGVKGIL 175 (211)
T ss_pred HHHHHHHh----cCccEEE-EEccHHHHHHHHHHHHHcCCceEE
Confidence 78887764 6888888 66676665 677899999987664
No 87
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.93 E-value=5.1e-05 Score=65.70 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=67.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD 93 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~ 93 (163)
++||||.| .||+||.+.|.+.+.+++|++++-|.. ..|+=.+++ +-+. ...+.++ .+
T Consensus 2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~-g~~I~v~~~~d 79 (343)
T PRK07729 2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKKIRLLNNRD 79 (343)
T ss_pred ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEEcCC
Confidence 47999999 699999999998878899999997731 112110111 0000 1224444 46
Q ss_pred HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
++++-.. +.++|+|+++|-.....+.+...++.|..+|+=+
T Consensus 80 p~~~~W~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (343)
T PRK07729 80 PKELPWT---DLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT 120 (343)
T ss_pred hhhCccc---ccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence 6666542 2489999988888888899999999997777534
No 88
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.93 E-value=1.2e-05 Score=60.43 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=54.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..+||+|+|+ ||+|+.+.+.+. ..+.+++++..++... +++..+.+ ..+ +.++++++. +.|+++
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~~sa~~a~~~~~-----~~~-~~~~~~~~~------~aDlv~- 73 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSPASAERAAAFIG-----AGA-ILDLEEILR------DADLVF- 73 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH-HHHHHHC--T-----T------TTGGGC------C-SEEE-
T ss_pred CccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCcccccccccccc-----ccc-ccccccccc------cCCEEE-
Confidence 4699999995 999999999987 6789999988754211 22222221 222 346777664 899988
Q ss_pred ccCchhHHHHHHHHHHcC-----CcEEEeCCCC-CHHH
Q 031216 113 FTDASTVYDNVKQATAFG-----MRSVVYVPHI-QLET 144 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G-----~~vVigttg~-~~e~ 144 (163)
.|.|+...+.+...+... =.+|+.|.|. +.+-
T Consensus 74 iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~~v 111 (127)
T PF10727_consen 74 IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDV 111 (127)
T ss_dssp E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--GGG
T ss_pred EEechHHHHHHHHHHHHhccCCCCcEEEECCCCChHHh
Confidence 777888765444444332 3588888864 4443
No 89
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.93 E-value=0.0002 Score=59.44 Aligned_cols=111 Identities=7% Similarity=0.104 Sum_probs=69.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~---~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+||+++| +|.||..+++.+.+.. ..++. +++++. ......+.. .+++.++++..++.. +.|+||-
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~~---~~g~~~~~~~~e~~~------~aDvVil 71 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELHQ---KYGVKGTHNKKELLT------DANILFL 71 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHHH---hcCceEeCCHHHHHh------cCCEEEE
Confidence 5899999 6999999999988653 14444 456532 112223221 346667788888764 7899997
Q ss_pred ccCchhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216 113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 113 fT~p~~~~~~~~~al---~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (163)
+..|....+.+.... ..+.-+|.-..|.+.++..++.. ...+|+.+
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~--~~~~v~r~ 120 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQ--KDVPIIRA 120 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCCeEEEE
Confidence 777777666554433 33444554446888777655431 23466654
No 90
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.93 E-value=4.3e-05 Score=67.27 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCc---c----hhhhccCCCCCCccee
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGE---D----IGMVCDMEQPLEIPVM 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~---~----~~~l~g~~~~~gi~v~ 91 (163)
+++||+|+|+ |++||.++|.+.+. +.++|+++=|.. ..|+ + .++.+-+. ...+.++
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~ 136 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVV 136 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEE
Confidence 4489999996 99999999998766 789999876521 0010 0 01111111 1234444
Q ss_pred --CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 --~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
.|++++-.. +..+|+|+++|-.....+.+...++.|...|+=+
T Consensus 137 ~~~dp~~~~w~---~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 137 SDRNPLNLPWG---ELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred EcCCccccccc---ccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 346665442 2489999999988888888999999997766534
No 91
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.92 E-value=6e-05 Score=61.57 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCCCCC-cc-----eeCCHHHHHhccc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS 102 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~~~g-i~-----v~~~l~ell~~~~ 102 (163)
+.+||+|.| .|.+|+.+++.+. ..+++++++.|+ .+.|-|..++.......+ +. .+-+.++++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~--- 104 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE--- 104 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence 568999999 7999999999987 469999999995 245666666543211111 11 1224566665
Q ss_pred ccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.++||+|.++.++.. .+++. +-...+|+|-. .++++..+.| ++.||++.+
T Consensus 105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~rGi~~~P 157 (227)
T cd01076 105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HERGVLVVP 157 (227)
T ss_pred --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HHCCCEEEC
Confidence 589999999866655 34444 33589999887 4565554444 466777743
No 92
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=97.91 E-value=4.5e-05 Score=67.96 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------ccCCCCCCccee
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPLEIPVM 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l-------~g~~~~~gi~v~ 91 (163)
+++||+|.| .||+||.+.|.+... +++|+|++=|.. ..|+=-+++ +-+. ...+.++
T Consensus 74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~-Gk~I~V~ 151 (442)
T PLN02237 74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVD-GKPIKVV 151 (442)
T ss_pred ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEEC-CEEEEEE
Confidence 559999999 799999999987655 789999987721 112100011 0000 1123344
Q ss_pred C--CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 92 S--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ~--~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
. +++++-.. +..+|+||++|-.....+.+...++.|...|+=+
T Consensus 152 ~~~dp~~l~W~---~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS 196 (442)
T PLN02237 152 SNRDPLKLPWA---ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 196 (442)
T ss_pred EcCCchhCChh---hcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence 2 34343321 2489999988888888899999999997766534
No 93
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.89 E-value=7e-05 Score=64.60 Aligned_cols=98 Identities=26% Similarity=0.229 Sum_probs=66.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--CC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM--SD 93 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~--~~ 93 (163)
++||+|.| .||+||.+.|.+.+.+++|++++=|.. ..|+=.+++ +-+. ...+.++ .+
T Consensus 2 ~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~-g~~I~v~~~~d 79 (331)
T PRK15425 2 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVN-GKKIRVTAERD 79 (331)
T ss_pred ceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEEC-CeEEEEEEcCC
Confidence 37999999 699999999998778899999998721 112111111 0000 1223444 36
Q ss_pred HHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
++++-.. +..+|+|+++|-.....+.+...++.|..+|+=+
T Consensus 80 p~~~~w~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (331)
T PRK15425 80 PANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120 (331)
T ss_pred hhhCccc---ccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence 6665541 2489999988877777889999999997777534
No 94
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.87 E-value=4.8e-05 Score=65.74 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=65.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh------ccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l------~g~~~~~gi~v~-- 91 (163)
|+||||.| .||+||.+.|.+.+. +++++|++-|.. ..|+--+++ +-+. ...+.++
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVN-GKTIKCVSD 78 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEEC-CEEEEEEEc
Confidence 78999999 799999999997766 689999998731 112110111 0000 1234444
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
.+++++-.. +.++|+|+++|-.....+.+...++.|...|+=+
T Consensus 79 ~dp~~~~W~---~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 79 RNPLNLPWK---EWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CCcccCChh---hcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 344554431 2489999988888888899999999997766533
No 95
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.86 E-value=0.00021 Score=60.08 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=69.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|.||+++| +|.||..+++.+.+ .+.++. ++|++. ....++. ..++....+++++.. ..|+||.+.
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML 65 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence 35899999 79999999999874 567765 567542 2233332 235556678888774 789988555
Q ss_pred CchhHHHHHH-------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216 115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (163)
Q Consensus 115 ~p~~~~~~~~-------~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (163)
++....+.+. ..+..|. +++-++..++++..+|.+..++.++-
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 5544333331 1233444 44545556677788888877776644
No 96
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.85 E-value=5.2e-05 Score=65.50 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=65.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcc------hhhhccCCCCCCccee-
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGED------IGMVCDMEQPLEIPVM- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~---~~~eLvgvid~~-------------~~g~~------~~~l~g~~~~~gi~v~- 91 (163)
|+||+|+|+ |++||.+.|.+.+. ++++|+++=|.. ..|+= .+..+-+. ...+.++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH 78 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence 589999996 99999999998763 589999887511 11110 01111111 1234444
Q ss_pred -CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
.+++++-.. +..+|+|+++|-.....+.+..++++|..+|+=+
T Consensus 79 ~~~p~~~~w~---~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS 122 (336)
T PRK13535 79 ERDIASLPWR---ELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS 122 (336)
T ss_pred cCCcccCccc---ccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence 366665432 2589999988888888899999999997766544
No 97
>PRK07680 late competence protein ComER; Validated
Probab=97.84 E-value=0.00018 Score=59.60 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=62.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+||+|+| +|.||+.+++.+.+...+ +-+.+++++. .....+... ..++.++.+.++++. ++|+||.+
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~~--~~g~~~~~~~~~~~~------~aDiVila 69 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKER--YPGIHVAKTIEEVIS------QSDLIFIC 69 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHHH--cCCeEEECCHHHHHH------hCCEEEEe
Confidence 4799999 699999999998755322 3355677542 122222210 125667788888764 89999977
Q ss_pred cCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHH
Q 031216 114 TDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSA 147 (163)
Q Consensus 114 T~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~ 147 (163)
+.|....+.+... +..+..+|.-..|.+.++.+.
T Consensus 70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET 106 (273)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 7777766665543 334554444344676555443
No 98
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.83 E-value=0.00033 Score=58.90 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+++| +|+||..+++.+.+ .+.++.+ .|++. .....+. ..+...+.+++++.+. ...+|+|+-+.+
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~---~~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQR---LSAPRVVWVMVP 68 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhh---cCCCCEEEEEcC
Confidence 4899999 79999999999874 6888875 77643 1222332 2344445677776542 136899885555
Q ss_pred chhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216 116 ASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (163)
Q Consensus 116 p~~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V 157 (163)
+..+.+.+ ...++.|.-+|-.++... ++..++.+..++.++
T Consensus 69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~-~~t~~~~~~~~~~g~ 112 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDIVIDGGNSYY-KDSLRRYKLLKEKGI 112 (298)
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCCc-ccHHHHHHHHHhcCC
Confidence 54333333 334456655555444442 333444444444443
No 99
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.82 E-value=0.00029 Score=58.70 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=64.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p 116 (163)
||+|+| +|.||+.+++.+.+ .+.++. ++|++. .....+. ..+....+++++++. +.|+||.+.+.
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence 699999 79999999999874 578877 567542 2222322 335555678888875 89999955443
Q ss_pred hhHHH-HH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216 117 STVYD-NV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (163)
Q Consensus 117 ~~~~~-~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~ 156 (163)
....+ .+ ...+..|. +|+-++..++.+..+|.+..++.+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g 111 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKG 111 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcC
Confidence 32332 22 11223344 444455566776677777776644
No 100
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00022 Score=59.77 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=71.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
|+||+++| .|+||+.+++-+.+...+ +-+-+.++... ....+.. .+++..+++.+++.. +.|+|+.
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e--~~~~l~~---~~g~~~~~~~~~~~~------~advv~L 68 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIVTNRSEE--KRAALAA---EYGVVTTTDNQEAVE------EADVVFL 68 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEEeCCCHH--HHHHHHH---HcCCcccCcHHHHHh------hCCEEEE
Confidence 57999999 599999999999876622 34445554321 1112221 455555677777764 8999998
Q ss_pred ccCchhHHHHHHHHH--HcCCcEEEeCCCCCHHHHHHHH
Q 031216 113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALS 149 (163)
Q Consensus 113 fT~p~~~~~~~~~al--~~G~~vVigttg~~~e~~~~L~ 149 (163)
...|....+.+.... ..++.+|+-..|.+-++++.+.
T Consensus 69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l 107 (266)
T COG0345 69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLL 107 (266)
T ss_pred EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHc
Confidence 888988877777664 4788898878899877655443
No 101
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=9.7e-05 Score=61.54 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=57.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcc--------------
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSI-------------- 101 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~-------------- 101 (163)
++++++| .||||..+++++. ..+.++|+ +|...... .++. ..++...+++++++..+
T Consensus 1 M~iGmiG-LGrMG~n~v~rl~-~~ghdvV~-yD~n~~av--~~~~----~~ga~~a~sl~el~~~L~~pr~vWlMvPag~ 71 (300)
T COG1023 1 MQIGMIG-LGRMGANLVRRLL-DGGHDVVG-YDVNQTAV--EELK----DEGATGAASLDELVAKLSAPRIVWLMVPAGD 71 (300)
T ss_pred Ccceeec-cchhhHHHHHHHH-hCCCeEEE-EcCCHHHH--HHHH----hcCCccccCHHHHHHhcCCCcEEEEEccCCC
Confidence 5799999 8999999999987 56888885 66321100 0000 11111122222222111
Q ss_pred ---------c-ccCCccEEEEccCc--hhHHHHHHHHHHcCCcEE-EeCCC
Q 031216 102 ---------S-QSKARAVVIDFTDA--STVYDNVKQATAFGMRSV-VYVPH 139 (163)
Q Consensus 102 ---------~-~~~~~DVVIDfT~p--~~~~~~~~~al~~G~~vV-igttg 139 (163)
+ ...+=|+|||-.+. .......+.+.++|+|.+ +||+|
T Consensus 72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 0 12467999997644 455677788899999998 77763
No 102
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.77 E-value=0.00035 Score=58.79 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=69.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+++| +|+||..+++.+. ..+.++. +.|+... ...+. ..++...+++.++.. ..|+||-+..
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~-~~G~~v~-v~~~~~~---~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLA-RAGHQLH-VTTIGPV---ADELL----SLGAVSVETARQVTE------ASDIIFIMVP 64 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHH-HCCCeEE-EEeCCHh---HHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence 3799999 7999999999987 4577776 5665321 22222 345666778888764 8999884443
Q ss_pred ch-hHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 116 AS-TVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 116 p~-~~~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
.. .+.+.+ ...+..| .+|+-.+..++++..++.+.+++.++-|
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~ 114 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDY 114 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 22 223322 1112334 3566677778888888888887776543
No 103
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.74 E-value=0.0002 Score=59.89 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=56.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc----------CCCCCCcceeCCHHHHHhccccc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----------MEQPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g----------~~~~~gi~v~~~l~ell~~~~~~ 104 (163)
|+||+|+| .|.||..++..+.+ .+.++. ++++.. .....+.. ...+.++...+++++++.
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~-~g~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 70 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLAR-NGHDVT-LWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA----- 70 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence 67999999 59999999999874 577764 566431 01111110 000124555678887764
Q ss_pred CCccEEEEccCchhHHHHHHHHH---HcCCcEEEeCCCCCHH
Q 031216 105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLE 143 (163)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigttg~~~e 143 (163)
++|+||.++.+....+.+.... ..+..+|.-+.|++.+
T Consensus 71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~ 111 (325)
T PRK00094 71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG 111 (325)
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence 8899996655543333333332 3455555433355543
No 104
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.71 E-value=0.00057 Score=56.42 Aligned_cols=94 Identities=7% Similarity=0.053 Sum_probs=61.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~---eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+||+++| +|.||..+++.+.+...+ ++. +.+++.. ..++....+.+++.. ++|+||.
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~~------------~~~~~~~~~~~~~~~------~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIY-YHTPSKK------------NTPFVYLQSNEELAK------TCDIIVL 63 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEE-EECCChh------------cCCeEEeCChHHHHH------hCCEEEE
Confidence 6899999 699999999999865422 243 3343210 112233457777664 7899998
Q ss_pred ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHH
Q 031216 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALS 149 (163)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L~ 149 (163)
++.|....+.+..... .+..+|+-..|.+.++.+.+.
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~ 102 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV 102 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence 8888877766655432 245666666688877766553
No 105
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.69 E-value=0.00012 Score=62.04 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=82.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE--EE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV--VI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV--VI 111 (163)
+.+|.|+|. +.|+..+..+... |+++|+|+...-. ++-.+++- .+|++.|.++||+-+ .+|+ |+
T Consensus 4 pksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLAh---~~GVply~~~eelpd------~idiACVv 70 (361)
T COG4693 4 PKSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALAH---RLGVPLYCEVEELPD------DIDIACVV 70 (361)
T ss_pred CceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHHH---HhCCccccCHhhCCC------CCCeEEEE
Confidence 458999994 9999988887776 8999999988422 22334432 679999999999875 6663 33
Q ss_pred Ecc-C-chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 112 DFT-D-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 112 DfT-~-p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
.=+ . -..-.+.++..+++|++|+.+-|=. ++++.+|.++|++.|.-|
T Consensus 71 Vrsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~y 119 (361)
T COG4693 71 VRSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRY 119 (361)
T ss_pred EeeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcEE
Confidence 222 2 2334688899999999999976644 678999999999987644
No 106
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.69 E-value=9.4e-05 Score=63.05 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=61.5
Q ss_pred EecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc------CchhHHHHHHHHHHcCCcEEEeCCCC
Q 031216 67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI 140 (163)
Q Consensus 67 id~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~G~~vVigttg~ 140 (163)
+|++..|++++++++. ..++|++++++++ . ..+|++|.-. .|+.+.+.+..|+++|++||.|-..+
T Consensus 1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~ 72 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF 72 (301)
T ss_dssp E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence 5777889999999986 4899999999999 4 5999988532 57788899999999999999987654
Q ss_pred CHHHHHHHHHHhhhcCeE
Q 031216 141 QLETVSALSAFCDKASMV 158 (163)
Q Consensus 141 ~~e~~~~L~~~A~~~~Vv 158 (163)
..+.++|.++|++.++-
T Consensus 73 -L~ddpel~~~A~~~g~~ 89 (301)
T PF07755_consen 73 -LSDDPELAAAAKKNGVR 89 (301)
T ss_dssp -HCCHHHHHCCHHCCT--
T ss_pred -hccCHHHHHHHHHcCCe
Confidence 44568899999998763
No 107
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00013 Score=62.59 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc------CchhHHH
Q 031216 48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD 121 (163)
Q Consensus 48 G~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT------~p~~~~~ 121 (163)
|+...-.+.....+.+++++|+...+.+....++.. ..++|+.+|++++++. ..|++|.-. .|+.+.+
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~~-~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~ 88 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGGD-KADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE 88 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCCc-cCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence 444444444455599999999877774544444432 6789999999999973 458877654 4667789
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216 122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (163)
Q Consensus 122 ~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V 157 (163)
+++.|+++|++||.|-..+ .++..++.++|++.|+
T Consensus 89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~ 123 (339)
T COG3367 89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGV 123 (339)
T ss_pred HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCC
Confidence 9999999999999987777 6778999999999887
No 108
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.66 E-value=0.00044 Score=55.58 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=31.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
|||+|+||+|+.|+.+++.+. ..|.|+++++.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeCh
Confidence 699999999999999999987 6899999999853
No 109
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=97.65 E-value=0.00025 Score=61.83 Aligned_cols=99 Identities=22% Similarity=0.173 Sum_probs=60.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEecC--------------CCCcchhhh--------------ccC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDSH--------------SVGEDIGMV--------------CDM 82 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~----~~~eLvgvid~~--------------~~g~~~~~l--------------~g~ 82 (163)
++||||.| .||+||.+.|.+.+. +++|+|++-|+. ..|+=.+++ +-+
T Consensus 3 ~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 3 PIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred ceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 47999999 699999999997764 689999998831 112210111 000
Q ss_pred CCCCCccee---CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcC-CcEEEeCC
Q 031216 83 EQPLEIPVM---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP 138 (163)
Q Consensus 83 ~~~~gi~v~---~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigtt 138 (163)
. ...|.++ .+++++-.. +..+|+|||+|-.-...+.+..-++.| +.||+-.|
T Consensus 82 n-g~~I~~~~~~~dP~~ipW~---~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP 137 (361)
T PTZ00434 82 N-GHRIKCVKAQRNPADLPWG---KLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAP 137 (361)
T ss_pred C-CEEEEEEEecCChhhCchh---hcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCC
Confidence 0 1234443 466666542 358999999884333334444445566 66666444
No 110
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.65 E-value=0.00062 Score=56.85 Aligned_cols=100 Identities=10% Similarity=0.089 Sum_probs=64.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~---~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+||+++| +|+||..+++.+.+.. ..++. ++|++. .....+.. ..++.++++.++++. +.|+||-
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~~---~~g~~~~~~~~e~~~------~aDiIiL 69 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNASD---KYGITITTNNNEVAN------SADILIL 69 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHHH---hcCcEEeCCcHHHHh------hCCEEEE
Confidence 5899999 6999999999987543 12444 456432 22222221 245666778888764 8899997
Q ss_pred ccCchhHHHHHHHH---HHcCCcEEEeCCCCCHHHHHHH
Q 031216 113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSAL 148 (163)
Q Consensus 113 fT~p~~~~~~~~~a---l~~G~~vVigttg~~~e~~~~L 148 (163)
+..|....+.+... ++.+.-+|.--.|.+-++++++
T Consensus 70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~ 108 (272)
T PRK12491 70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENE 108 (272)
T ss_pred EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHh
Confidence 88887766655443 3345555555558887775554
No 111
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.62 E-value=0.00015 Score=61.92 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=63.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
.+++|+| +|.+|+.+++.+....+++-+.++++.. .+..++.. +....+ +..++++++++. +.|+||.
T Consensus 128 ~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~ 198 (325)
T PRK08618 128 KTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT 198 (325)
T ss_pred cEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 5899999 6999999999887778999999999753 12222221 000122 345789999885 8999995
Q ss_pred ccCchhHHHHHHHHHHcCCcEE-EeC
Q 031216 113 FTDASTVYDNVKQATAFGMRSV-VYV 137 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV-igt 137 (163)
+| |....-.. ..++.|+||. +|.
T Consensus 199 aT-~s~~p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 199 VT-NAKTPVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred cc-CCCCcchH-HhcCCCcEEEecCC
Confidence 55 55554444 7889999985 444
No 112
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.62 E-value=0.00013 Score=55.90 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=56.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--------g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D 108 (163)
||+|+|+ |.+|..++..+.. .+.++. +..++.. +....-+.+..-+..+.+++|++++++ +.|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~-~g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad 71 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLAD-NGHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD 71 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHH-CTEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred CEEEECc-CHHHHHHHHHHHH-cCCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence 7999995 9999999998874 555555 4443210 000011111111335667899999985 899
Q ss_pred EEEEccCchhHHHHH---HHHHHcCCcEEEeCCCC
Q 031216 109 VVIDFTDASTVYDNV---KQATAFGMRSVVYVPHI 140 (163)
Q Consensus 109 VVIDfT~p~~~~~~~---~~al~~G~~vVigttg~ 140 (163)
++|-.++...+.+.+ ..+++.+..+|+-+.|+
T Consensus 72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 988555444444444 44566888988877687
No 113
>PLN02712 arogenate dehydrogenase
Probab=97.60 E-value=0.0012 Score=61.69 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
++++||+|+| .|+||+.+++.+.+. +.+|.+ +|+... .. .+ ...++..+.+++++.. ..+|+||.
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~-G~~V~~-~dr~~~-~~---~A---~~~Gv~~~~d~~e~~~-----~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQ-GHTVLA-HSRSDH-SL---AA---RSLGVSFFLDPHDLCE-----RHPDVILL 114 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEE-EeCCHH-HH---HH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence 3568999999 699999999998754 788876 554321 11 11 1345666788888764 36999997
Q ss_pred ccCchhHHHHHHHHH----HcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216 113 FTDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFC 152 (163)
Q Consensus 113 fT~p~~~~~~~~~al----~~G~~vVigttg~~~e~~~~L~~~A 152 (163)
++.|....+.+.... +.| .+|+-.......-.+.+.+..
T Consensus 115 avP~~~~~~vl~~l~~~~l~~g-~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 115 CTSIISTENVLKSLPLQRLKRN-TLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred cCCHHHHHHHHHhhhhhcCCCC-eEEEECCCCcHHHHHHHHHhc
Confidence 777766666655432 223 355545444333333444443
No 114
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.60 E-value=0.00028 Score=62.65 Aligned_cols=99 Identities=21% Similarity=0.263 Sum_probs=64.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhh-------ccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMV-------CDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--------------~~g~~~~~l-------~g~~~~~gi~v~-- 91 (163)
|+||||.| .||+||.+.|.+...++++++++-|+. ..|+=.+++ +-+. ...+.++
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~-G~~I~V~~~ 162 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEIN-GKQIKVTSK 162 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEEC-CEEEEEEec
Confidence 57999999 799999999998766899999988731 112111111 0000 1123343
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCC-cEEEeCC
Q 031216 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP 138 (163)
Q Consensus 92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigtt 138 (163)
.+++++... +.++|+|+++|-.....+.+...++.|. .|||-.|
T Consensus 163 ~dp~~~~w~---~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 163 RDPAEIPWG---DFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred CCcccCccc---ccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 355554431 2379999988877777888888889984 5665444
No 115
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.58 E-value=0.00059 Score=55.45 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC-CCCCccee-----CCHHHHHhccc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSIS 102 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~-~~~gi~v~-----~~l~ell~~~~ 102 (163)
+..||+|.| .|++|+.+++.+.+ .|..++++.|++ + |-|+.+++... ...++..+ .+.++++.
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--- 95 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG--- 95 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee---
Confidence 458999999 79999999999874 589999999953 3 55554443211 01122222 23356664
Q ss_pred ccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216 103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.++||+|.++..+.. +...+.+.+.++|+|.. .++++..+.| ++.||++-+
T Consensus 96 --~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~Gi~v~P 148 (217)
T cd05211 96 --LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HERGIVVAP 148 (217)
T ss_pred --ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHCCcEEEC
Confidence 589999977755433 22334466799999876 3566544444 445677643
No 116
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.57 E-value=0.00034 Score=55.79 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=58.1
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----eCCH---HHHHhcccccCCccEE
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDL---TMVLGSISQSKARAVV 110 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~~~l---~ell~~~~~~~~~DVV 110 (163)
|+|+|++|+.|+.+++.|.+ ++.++.+++.+.. ......+- ..|+.+ ++|. .+++ ..+|+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al------~g~d~v 68 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL------KGVDAV 68 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH------TTCSEE
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH------cCCceE
Confidence 78999999999999999997 9999998887431 11122221 122221 2333 4455 499999
Q ss_pred EEccC---ch---hHHHHHHHHHHcCCcEEEeC
Q 031216 111 IDFTD---AS---TVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 111 IDfT~---p~---~~~~~~~~al~~G~~vVigt 137 (163)
+..+. +. .....+++|.++|++.++=.
T Consensus 69 ~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 69 FSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp EEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred EeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence 97765 22 23567889999998888733
No 117
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=97.55 E-value=0.00036 Score=58.08 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=58.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee------CCHHHHHhcccccCCccE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM------SDLTMVLGSISQSKARAV 109 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~------~~l~ell~~~~~~~~~DV 109 (163)
+||.|.|++|- |+.+++.+.+ .+.++++.+.... |.....- ..+.++. .++.+.+. +.++|+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~~~~-----~g~~~v~~g~l~~~~l~~~l~----~~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHLYPI-----HQALTVHTGALDPQELREFLK----RHSIDI 68 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-ccccccc-----cCCceEEECCCCHHHHHHHHH----hcCCCE
Confidence 58999999998 9999999874 5788887766432 2211110 0112221 33445554 378999
Q ss_pred EEEccCchhH---HHHHHHHHHcCCcEE
Q 031216 110 VIDFTDASTV---YDNVKQATAFGMRSV 134 (163)
Q Consensus 110 VIDfT~p~~~---~~~~~~al~~G~~vV 134 (163)
|||+|+|-+. ......|.+.|+|.+
T Consensus 69 VIDAtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 69 LVDATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999664 345578899999988
No 118
>PLN02256 arogenate dehydrogenase
Probab=97.53 E-value=0.0018 Score=55.07 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+++||+|+| +|.||+.+++.+.+ .+.++.+ +|+... . +.. ...++..++++++++. ..+|+||.+
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~-~G~~V~~-~d~~~~-~---~~a---~~~gv~~~~~~~e~~~-----~~aDvVila 99 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVK-QGHTVLA-TSRSDY-S---DIA---AELGVSFFRDPDDFCE-----EHPDVVLLC 99 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-EECccH-H---HHH---HHcCCeeeCCHHHHhh-----CCCCEEEEe
Confidence 458999999 69999999999875 5678885 554321 1 111 1345556788888764 378999977
Q ss_pred cCchhHHHHHHHH
Q 031216 114 TDASTVYDNVKQA 126 (163)
Q Consensus 114 T~p~~~~~~~~~a 126 (163)
+.|....+.+...
T Consensus 100 vp~~~~~~vl~~l 112 (304)
T PLN02256 100 TSILSTEAVLRSL 112 (304)
T ss_pred cCHHHHHHHHHhh
Confidence 7777666666554
No 119
>PLN02712 arogenate dehydrogenase
Probab=97.49 E-value=0.0018 Score=60.51 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+++||+|+| .|.||+.+++.+.+ .+.++. ++|++.. .+ ... ..|+..+.+++++.. ..+|+||-+
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~-~G~~V~-~~dr~~~-~~--~a~----~~Gv~~~~~~~el~~-----~~aDvVILa 432 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVK-QGHTVL-AYSRSDY-SD--EAQ----KLGVSYFSDADDLCE-----EHPEVILLC 432 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHH-CcCEEE-EEECChH-HH--HHH----HcCCeEeCCHHHHHh-----cCCCEEEEC
Confidence 568999999 79999999999874 578877 5565421 11 111 235556788888775 368999977
Q ss_pred cCchhHHHHHHHHHH--c-CCcEEEeCCCCCHHHHHHHHHH
Q 031216 114 TDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAF 151 (163)
Q Consensus 114 T~p~~~~~~~~~al~--~-G~~vVigttg~~~e~~~~L~~~ 151 (163)
+.|....+.+..... . .-.+|+-.+.......+.+.+.
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~ 473 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQH 473 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHh
Confidence 766666665654432 1 1235554433323333444444
No 120
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.47 E-value=0.0014 Score=54.75 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=67.8
Q ss_pred EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccCchhH
Q 031216 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV 119 (163)
Q Consensus 40 VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~ 119 (163)
++| +|.||..+++.+.+ .+.++. ++|++. .....+. ..++...++++++.. +.|+||-+..+...
T Consensus 1 ~IG-lG~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH 65 (288)
T ss_pred CCc-ccHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence 478 79999999999874 577765 467542 2222332 345666788988875 88999855544333
Q ss_pred -HHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 120 -YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 120 -~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
.+.+ ...+..|. +|+-.++.+++...++.+.+++.++-|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~-~vid~st~~p~~~~~~~~~~~~~g~~~ 111 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGS-LLIDCSTIDPDSARKLAELAAAHGAVF 111 (288)
T ss_pred HHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 3333 22334444 555566888888899988888776543
No 121
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.40 E-value=0.0015 Score=58.50 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=79.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCCCC--Ccc--------eeCCHHHHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL--EIP--------VMSDLTMVL 98 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~~~--gi~--------v~~~l~ell 98 (163)
+..||+|.| .|++|+..++.+. ..+.+|+++.|+ ...|-|+.++....... .+. -+.+.++++
T Consensus 231 ~g~rVaIqG-fGnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445)
T PRK09414 231 EGKRVVVSG-SGNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence 458999999 6999999999987 578999999994 24566766544321000 111 123455666
Q ss_pred hcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216 99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
. .++||+|-++..+.. .+++......+..+|+|-. .++++..+.| .+.||++.+
T Consensus 309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~rGI~~vP 365 (445)
T PRK09414 309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEAGVLFAP 365 (445)
T ss_pred c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHCCcEEEC
Confidence 5 589999988866555 5777777777999999877 3566654444 445777643
No 122
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.39 E-value=0.0016 Score=54.92 Aligned_cols=80 Identities=19% Similarity=0.093 Sum_probs=52.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+|+| +|.||+.+++.+. ..+.++. +.+++.. .++++++. +.|+|| ++.
T Consensus 5 m~I~iiG-~G~~G~~lA~~l~-~~G~~V~-~~~r~~~-------------------~~~~~~~~------~advvi-~~v 55 (308)
T PRK14619 5 KTIAILG-AGAWGSTLAGLAS-ANGHRVR-VWSRRSG-------------------LSLAAVLA------DADVIV-SAV 55 (308)
T ss_pred CEEEEEC-ccHHHHHHHHHHH-HCCCEEE-EEeCCCC-------------------CCHHHHHh------cCCEEE-EEC
Confidence 6899999 6999999999987 4577875 5565320 36677764 899988 555
Q ss_pred chhH-HHHHHHH----HHcCCcEEEeCCCCCHHH
Q 031216 116 ASTV-YDNVKQA----TAFGMRSVVYVPHIQLET 144 (163)
Q Consensus 116 p~~~-~~~~~~a----l~~G~~vVigttg~~~e~ 144 (163)
|... .+.+... +..++-+|..++|++++.
T Consensus 56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~ 89 (308)
T PRK14619 56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPET 89 (308)
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCC
Confidence 5544 3433333 223555666565665543
No 123
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.39 E-value=0.0029 Score=56.27 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=62.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+|+|++|.||+.+++.+.+ .+.++.+ ++++. ....++.. ..++...+++++++. .+|+||.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~v-~~r~~--~~~~~~a~---~~gv~~~~~~~e~~~------~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE-KGFEVIV-TGRDP--KKGKEVAK---ELGVEYANDNIDAAK------DADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH-CCCEEEE-EECCh--HHHHHHHH---HcCCeeccCHHHHhc------cCCEEEEecC
Confidence 4899998679999999999874 5677654 45432 11112211 335555677877764 8899997776
Q ss_pred chhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216 116 ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCD 153 (163)
Q Consensus 116 p~~~~~~~~~al~---~G~~vVigttg~~~e~~~~L~~~A~ 153 (163)
++...+.+..... .|. +|+-.+.......+.+.+...
T Consensus 68 ~~~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~~~~ 107 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEEYAP 107 (437)
T ss_pred HHHHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHHhcC
Confidence 6655555544433 333 444344433445556665543
No 124
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.39 E-value=0.0028 Score=53.55 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=60.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~--------g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~ 107 (163)
|||+|+|+ |.||..++..+.+ .+.++. +++++.. +.....+.+...+.++.+++++++.+. ..+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence 48999995 9999999998874 567765 5664310 000000111111234567788888764 378
Q ss_pred cEEEEccCchhHHHHHHHHHH----cCCcEEEeCCCCCH
Q 031216 108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQL 142 (163)
Q Consensus 108 DVVIDfT~p~~~~~~~~~al~----~G~~vVigttg~~~ 142 (163)
|++|.++.+....+.+..... .+..+|+-+-|+..
T Consensus 73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999966666655555554433 35567776667743
No 125
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.37 E-value=0.00072 Score=51.59 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=51.1
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCH---HHHHhcccccCCccEEEE
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL---TMVLGSISQSKARAVVID 112 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l---~ell~~~~~~~~~DVVID 112 (163)
|.|+||+|.+|+.+++.+.+. +.++.+++.+.. +..+.. ...+.. +.++ .+++ .++|+||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~~~----~~~~~~~d~~d~~~~~~al------~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAEDSP----GVEIIQGDLFDPDSVKAAL------KGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHHCT----TEEEEESCTTCHHHHHHHH------TTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccccc----ccccceeeehhhhhhhhhh------hhcchhhh
Confidence 789999999999999999865 599999887532 111110 111111 1333 4455 38999997
Q ss_pred ccCc----h-hHHHHHHHHHHcCCcEE
Q 031216 113 FTDA----S-TVYDNVKQATAFGMRSV 134 (163)
Q Consensus 113 fT~p----~-~~~~~~~~al~~G~~vV 134 (163)
+..| . .....+..+.++|++-+
T Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 67 AAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp CCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhcccccccccccccccccccccc
Confidence 6532 1 22344556667786444
No 126
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.36 E-value=0.0023 Score=54.24 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=72.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||+.+| +|.||.-+++.+. ..++++. +.|++.. .+.+.+ ...|.....++.++.. ..|+||-+-.
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~-~aG~~v~-v~~r~~~--ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLL-KAGHEVT-VYNRTPE--KAAELL---AAAGATVAASPAEAAA------EADVVITMLP 66 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHH-HCCCEEE-EEeCChh--hhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence 4899999 8999999999998 5788877 5675431 112222 1346777888877764 8999885443
Q ss_pred chhHHHHHHH----HH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 116 ASTVYDNVKQ----AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 116 p~~~~~~~~~----al---~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
.....+.+.. .+ +.|.-+|- -+..+++...++.+.+++.|+-|
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~ 116 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEF 116 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcE
Confidence 3333333321 22 34666554 34567888999999999887654
No 127
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=97.35 E-value=0.0025 Score=57.11 Aligned_cols=119 Identities=9% Similarity=0.073 Sum_probs=72.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hcc-CC-CCCCccee
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCD-ME-QPLEIPVM 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~----------------l~g-~~-~~~gi~v~ 91 (163)
.+.||+|.|++|-+|+..++.+.++|+ ++++++....... +.+.+ +-. +. ...++.++
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl 135 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEII 135 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEE
Confidence 357999999999999999999988765 8999887743110 00000 000 00 00022333
Q ss_pred ---CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216 92 ---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (163)
Q Consensus 92 ---~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~ 156 (163)
+++.++.. ..++|+|+..-.=.....-...|+++||+|....-+.=-.-.+.|.+++++.+
T Consensus 136 ~G~egl~~la~----~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~ 199 (454)
T PLN02696 136 PGEEGIVEVAR----HPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHG 199 (454)
T ss_pred ECHHHHHHHHc----CCCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcC
Confidence 34444444 36789998655443345555889999999988654332333445666666654
No 128
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.35 E-value=0.0027 Score=57.48 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=71.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC---cceeCCHHHHHhcccccCCccEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g---i~v~~~l~ell~~~~~~~~~DVV 110 (163)
.+.+|+++| +|.||+.+++.+. ..+++|+ +.|++. ....++.......| +..+++++++.+.+ .++|+|
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~-~~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvI 76 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIA-EKGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSV 76 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHH-hCCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEE
Confidence 356899999 8999999999998 4688887 678643 22233321000112 23568999987531 359998
Q ss_pred EEccCch--hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216 111 IDFTDAS--TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 111 IDfT~p~--~~~~~---~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (163)
|- ..|+ .+.+. +...++.|.-+|- .+..++++..++.+.+++.|+-|-
T Consensus 77 i~-~v~~~~aV~~Vi~gl~~~l~~G~iiID-~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 77 II-LVKAGAPVDQTIKALSEYMEPGDCIID-GGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred EE-ECCCcHHHHHHHHHHHhhcCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCeEE
Confidence 84 4333 22333 3445566754444 444446667777777777776553
No 129
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.31 E-value=0.0053 Score=51.58 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=58.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVV 110 (163)
..||+|+| +|.||..+++.+.+. +. ++. ++|++.. ...... ..++ .+..++++++. ++|+|
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~-~~dr~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvV 70 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRL-GLAGEIV-GADRSAE--TRARAR----ELGLGDRVTTSAAEAVK------GADLV 70 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhc-CCCcEEE-EEECCHH--HHHHHH----hCCCCceecCCHHHHhc------CCCEE
Confidence 36899999 699999999998754 43 444 6675421 111111 1221 23467777764 89999
Q ss_pred EEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHH
Q 031216 111 IDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAF 151 (163)
Q Consensus 111 IDfT~p~~~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~ 151 (163)
|.++.+....+.+.. ++..|. +|+-..+...+..+.+.+.
T Consensus 71 iiavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~ 113 (307)
T PRK07502 71 ILCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPH 113 (307)
T ss_pred EECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHh
Confidence 977766554444433 333444 4443444444544555444
No 130
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.29 E-value=0.00089 Score=50.08 Aligned_cols=109 Identities=15% Similarity=0.026 Sum_probs=61.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc----ceeCCHHHHHhcccccCCccE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAV 109 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi----~v~~~l~ell~~~~~~~~~DV 109 (163)
+..||+|+| +|.||+.+++.+.+.. ..-+.++|++. .+..++.. ..+. ..+.++++++ .++|+
T Consensus 18 ~~~~i~iiG-~G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~Dv 84 (155)
T cd01065 18 KGKKVLILG-AGGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELL------AEADL 84 (155)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhcc------ccCCE
Confidence 347899999 5999999999998654 44455667542 11122211 1111 1245666665 38999
Q ss_pred EEEccCchhH----HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216 110 VIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (163)
Q Consensus 110 VIDfT~p~~~----~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (163)
||.++.+... .......++.|.-++--.+ . +... .|.+.+++.|+.
T Consensus 85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~-~-~~~~-~l~~~~~~~g~~ 134 (155)
T cd01065 85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVY-N-PLET-PLLKEARALGAK 134 (155)
T ss_pred EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCc-C-CCCC-HHHHHHHHCCCc
Confidence 9977765543 1222344566665442211 1 1111 566667776653
No 131
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.29 E-value=0.0016 Score=58.57 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEe
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID 68 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~----~~~eLvgvid 68 (163)
..+.||+|.| .||+||.++|.+.+. ++++|+++.+
T Consensus 125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~ 163 (477)
T PRK08289 125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVV 163 (477)
T ss_pred CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence 4578999999 799999999998766 6899999975
No 132
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.26 E-value=0.0041 Score=54.51 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=43.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc-cC--------C------CCCC-cceeCCHHHHHh
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E------QPLE-IPVMSDLTMVLG 99 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~-g~--------~------~~~g-i~v~~~l~ell~ 99 (163)
+||+|+| +|+||..++..+. ..|.++.+ +|++. ..+..+. |. . ...+ +..++++++++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La-~~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLA-DLGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHH-hcCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 4899999 7999999999987 46888775 56431 1111111 00 0 0012 455678888774
Q ss_pred cccccCCccEEEEcc
Q 031216 100 SISQSKARAVVIDFT 114 (163)
Q Consensus 100 ~~~~~~~~DVVIDfT 114 (163)
++|+||.+.
T Consensus 76 ------~advvii~v 84 (411)
T TIGR03026 76 ------DADVIIICV 84 (411)
T ss_pred ------hCCEEEEEe
Confidence 899988554
No 133
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.26 E-value=0.0012 Score=55.18 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=50.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT- 114 (163)
|||.|+|++|.+|+.+.+.+.+ .+.++++. ++.. -| +.-.+.+.+.+.. .+||+||.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~d------------l~d~~~~~~~~~~----~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LD------------LTDPEAVAKLLEA----FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-------------TTSHHHHHHHHHH----H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cC------------CCCHHHHHHHHHH----hCCCeEeccce
Confidence 7999999999999999999874 78888876 4321 11 1111344556653 5899999874
Q ss_pred ---------Cchh--------HHHHHHHHHHcCCcEE
Q 031216 115 ---------DAST--------VYDNVKQATAFGMRSV 134 (163)
Q Consensus 115 ---------~p~~--------~~~~~~~al~~G~~vV 134 (163)
.|+. ....++.|.+.|.++|
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li 97 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI 97 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence 2322 2245678888999987
No 134
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00098 Score=55.80 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH---HHHHhcccccC
Q 031216 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL---TMVLGSISQSK 105 (163)
Q Consensus 29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l---~ell~~~~~~~ 105 (163)
.--+.+++||++.||.|+.|+.+++.++.+|-+|+.-+..+...|+.+..+. +..+ .|.|+ |...- +...
T Consensus 13 ~~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~yt----k~ei-qy~~lst~D~~kl--ee~~ 85 (340)
T KOG4354|consen 13 SVKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYT----KLEI-QYADLSTVDAVKL--EEPH 85 (340)
T ss_pred ccccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcc----hhhe-eecccchhhHHHh--hcCC
Confidence 3445578999999999999999999999999999998887777777655443 2222 23222 22221 1124
Q ss_pred CccEEEEccCchhHH-HHHHHH-HHcCCcEEEe
Q 031216 106 ARAVVIDFTDASTVY-DNVKQA-TAFGMRSVVY 136 (163)
Q Consensus 106 ~~DVVIDfT~p~~~~-~~~~~a-l~~G~~vVig 136 (163)
..|.++ +..|..+. +.+... ...|+..+|.
T Consensus 86 avd~wv-maLPn~vckpfv~~~~s~~gks~iid 117 (340)
T KOG4354|consen 86 AVDHWV-MALPNQVCKPFVSLTESSDGKSRIID 117 (340)
T ss_pred ceeeee-eecchhhHHHHHHHHhhcCCceeeee
Confidence 556666 77887764 343322 3345655543
No 135
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.25 E-value=0.0035 Score=56.35 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=65.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+|+++| +|.||+.+++.+.+ .+.++. +.|++. .....+... ....++..+++++++.+.+ .++|+|+-+..
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK 72 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence 489999 79999999999975 578866 567542 122232211 0011245567888876431 36898885555
Q ss_pred c-hhHHHHH---HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 116 A-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 116 p-~~~~~~~---~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
| +.+.+.+ ...++.|.-+|-+++....+... +.+..++.++-|
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~-~~~~l~~~gi~f 119 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER-RYKELKAKGILF 119 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHH-HHHHHHhcCCEE
Confidence 4 2333333 34455676565555555444433 344455556655
No 136
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.25 E-value=0.0032 Score=54.99 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=62.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-CCcc-----------hhhhccCCCCCCcceeCCHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-VGED-----------IGMVCDMEQPLEIPVMSDLT 95 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~------~~eLvgvid~~~-~g~~-----------~~~l~g~~~~~gi~v~~~l~ 95 (163)
+++||+|+| +|.+|.+++..+.+.. +.++.--..+.. .+++ ..-+.+..-+.++..++|++
T Consensus 10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 458999999 5999999999998653 134332222221 1111 11112222234566688999
Q ss_pred HHHhcccccCCccEEEEccCchhHHHHHHHHH-----HcCCcEEEeCCCCCHHH
Q 031216 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQAT-----AFGMRSVVYVPHIQLET 144 (163)
Q Consensus 96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al-----~~G~~vVigttg~~~e~ 144 (163)
++++ ..|+||-..+|....+.+.... ..+..+|+.+.|++.++
T Consensus 89 eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 89 EAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 8885 8999886666666655555443 33446777777876443
No 137
>PRK06046 alanine dehydrogenase; Validated
Probab=97.23 E-value=0.00047 Score=58.91 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=60.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI 111 (163)
..+++|+| +|.+|+.+++.+...++++.+.++|+... ....+.. +....+ +.+++|+++++ . +|+|+
T Consensus 129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv 198 (326)
T PRK06046 129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKS--SAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV 198 (326)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHH--HHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence 46899999 69999999999988899999999997531 1122211 001123 45678999886 3 89999
Q ss_pred EccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216 112 DFTDASTVYDNV-KQATAFGMRSV-VY 136 (163)
Q Consensus 112 DfT~p~~~~~~~-~~al~~G~~vV-ig 136 (163)
.+|+. .. +.+ ...++.|.||. +|
T Consensus 199 ~aTps-~~-P~~~~~~l~~g~hV~~iG 223 (326)
T PRK06046 199 TTTPS-RK-PVVKAEWIKEGTHINAIG 223 (326)
T ss_pred EecCC-CC-cEecHHHcCCCCEEEecC
Confidence 66643 22 222 33468899976 55
No 138
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.23 E-value=0.003 Score=56.86 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=70.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
|.+|+|+| +|.||+.+++.+. ..+.++. +.|++.. ...++.......+ +..+++++++...+ .++|+|+-
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~-~~G~~V~-v~dr~~~--~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIA-SRGFKIS-VYNRTYE--KTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL 72 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEeCCHH--HHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence 46899999 7999999999997 4678766 5776431 1222221000113 34578999988531 36898776
Q ss_pred ccCch-hHHHH---HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEE
Q 031216 113 FTDAS-TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVS 159 (163)
Q Consensus 113 fT~p~-~~~~~---~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~ 159 (163)
+-.|. .+.+. +...++.|.-+|-++++...+ ..++.+..++.|+-|
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~d-t~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLN-TERRIKRCEEKGILY 122 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHH-HHHHHHHHHHcCCeE
Confidence 64443 33333 344566777777766666444 445556666667665
No 139
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.23 E-value=0.0073 Score=49.38 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=77.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
||||+|+. .|.-|+..++.+..+ =.-+++++.+.+. . -....+.+++.|..+ .++|++|-+
T Consensus 1 ~mki~vlt-~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~-----------~~~fie~P~~~Lp~~---~e~Di~va~ 62 (224)
T COG1810 1 MMKILVLT-DGEYGKRAVNNLACKGFKNQFVAVKEYPE---E-----------LPDFIEEPEDLLPKL---PEADIVVAY 62 (224)
T ss_pred CcEEEEEe-eccchHHHHHhHhhhccccceEEEEeccc---c-----------ccchhhCHHHhcCCC---CCCCEEEEe
Confidence 78999999 799999999988743 2356777666421 0 011235677777632 578988877
Q ss_pred c-CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216 114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 114 T-~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~t 160 (163)
+ +|+-.....+.+.+.|+..||--.+-+.-..++|++.+.+.|+.++
T Consensus 63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~ 110 (224)
T COG1810 63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFE 110 (224)
T ss_pred ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeee
Confidence 6 7888899999888999777764434445667889999998888764
No 140
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=97.23 E-value=0.0016 Score=56.19 Aligned_cols=96 Identities=24% Similarity=0.200 Sum_probs=62.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhh-------ccCCCCC-Cccee--
Q 031216 37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMV-------CDMEQPL-EIPVM-- 91 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~-------------~~g~~~~~l-------~g~~~~~-gi~v~-- 91 (163)
||||.| .||+||.+.|.+.+. ++++++++-|.. ..|+--.++ +-+. .. .+.++
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~-g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVN-GKFVIVVASE 78 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEEC-CeEEEEEEec
Confidence 799999 799999999998766 589999998731 112110111 0000 11 23333
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
.+++++-.. +..+|+|+++|-.....+.+...++.|...|+=+
T Consensus 79 ~dp~~~~w~---~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 79 RDPSDLPWK---ALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred CCcccCchh---hcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 255554331 2379999988877777888999999997666533
No 141
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.19 E-value=0.0019 Score=54.08 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=28.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
|||.|+||+|.+|+.+++.+.+ .+.++.++..+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRN 33 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcC
Confidence 4899999999999999999885 58998887654
No 142
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.18 E-value=0.0023 Score=53.41 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=84.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+..||.+-|.+|+-|.-|.+... .=+.++||.+.+...|. ..+|.|||.+..|+..+ .++|+-+.|
T Consensus 37 k~TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIy 102 (329)
T KOG1255|consen 37 KDTKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIY 102 (329)
T ss_pred CCceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEE
Confidence 34799999999999999999887 45899999998765543 26788999999999985 899987779
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHH
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF 151 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigtt-g~~~e~~~~L~~~ 151 (163)
-+|..+..-+..++++-+++++.-| |....+--++...
T Consensus 103 VPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~ 141 (329)
T KOG1255|consen 103 VPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHA 141 (329)
T ss_pred eCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHH
Confidence 9999999999999999999998777 6655444444443
No 143
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.16 E-value=0.0018 Score=56.12 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=30.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
++||||.| .||+||.+.|.+.+.+++|+|++-|
T Consensus 2 ~~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 2 PITVGING-FGPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred CeEEEEEC-CChHHHHHHHHHHhcCCcEEEEecC
Confidence 37999999 7999999999988788999999987
No 144
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.13 E-value=0.0045 Score=51.47 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=56.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC-cc-eeCCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g-i~-v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+||+|+| +|.||..+++.+.+ .+.++. ++|++.. ...... ..+ +. ..++.+ .+ .++|+||.+
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~-~g~~V~-~~d~~~~--~~~~a~----~~g~~~~~~~~~~-~~------~~aDlVila 64 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRS-LGHTVY-GVSRRES--TCERAI----ERGLVDEASTDLS-LL------KDCDLVILA 64 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEECCHH--HHHHHH----HCCCcccccCCHh-Hh------cCCCEEEEc
Confidence 4899999 79999999999875 477765 4565321 111111 112 11 223443 44 389999977
Q ss_pred cCchhHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHH
Q 031216 114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSA 150 (163)
Q Consensus 114 T~p~~~~~~~~~al~~--G~~vVigttg~~~e~~~~L~~ 150 (163)
+++....+.+...... ...+|+-+.+...+..+.+.+
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~ 103 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK 103 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH
Confidence 7666665655544332 234555444555555554443
No 145
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.13 E-value=0.00081 Score=57.51 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=62.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..+++|+| +|.||+.+++.+.....++-+.+.|+... +...+.......+ +.+++|+++++. +.|+|+-
T Consensus 128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~--~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVit 198 (325)
T TIGR02371 128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPS--TREKFALRASDYEVPVRAATDPREAVE------GCDILVT 198 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEE
Confidence 36899999 69999999999988888999999986532 2222211000223 456799999985 8999995
Q ss_pred ccCchhHHHHH-HHHHHcCCcEE-EeC
Q 031216 113 FTDASTVYDNV-KQATAFGMRSV-VYV 137 (163)
Q Consensus 113 fT~p~~~~~~~-~~al~~G~~vV-igt 137 (163)
+| |... +++ ...++.|.||. ||.
T Consensus 199 aT-~s~~-P~~~~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 199 TT-PSRK-PVVKADWVSEGTHINAIGA 223 (325)
T ss_pred ec-CCCC-cEecHHHcCCCCEEEecCC
Confidence 55 3332 222 34568899986 653
No 146
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.11 E-value=0.0053 Score=52.59 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=80.0
Q ss_pred eeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccc
Q 031216 24 FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ 103 (163)
Q Consensus 24 ~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~ 103 (163)
-+.++..+|+. .|||-+| .|.||+.+++.+.+ .+..++ +.|+... ...++. ..|..+.+++.|+.+
T Consensus 25 ~~~s~~~~~s~-~~iGFIG-LG~MG~~M~~nLik-~G~kVt-V~dr~~~--k~~~f~----~~Ga~v~~sPaeVae---- 90 (327)
T KOG0409|consen 25 TAMSSRITPSK-TRIGFIG-LGNMGSAMVSNLIK-AGYKVT-VYDRTKD--KCKEFQ----EAGARVANSPAEVAE---- 90 (327)
T ss_pred ccccccCCccc-ceeeEEe-eccchHHHHHHHHH-cCCEEE-EEeCcHH--HHHHHH----HhchhhhCCHHHHHh----
Confidence 36666666654 8999999 89999999999984 688887 6775431 122332 557888999999875
Q ss_pred cCCccEEEEc-cCchhHHHHHH------HHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCe
Q 031216 104 SKARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (163)
Q Consensus 104 ~~~~DVVIDf-T~p~~~~~~~~------~al~~G~~vVigttg~~~e~~~~L~~~A~~~~V 157 (163)
..|+||-. ++|..+.+.+. ..+..|.+..+--+..+++...+|.+.++..+.
T Consensus 91 --~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 91 --DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred --hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 89998743 34444444332 223455665455556778888888887776443
No 147
>PRK08223 hypothetical protein; Validated
Probab=97.10 E-value=0.0069 Score=51.39 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=61.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hh-hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IG-MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~-~l~g~~~~~gi~v~-- 91 (163)
.-||+|+| .|..|..++..+. ..|+.=..++|.+. .|+. +. .+..+.....+..+
T Consensus 27 ~s~VlIvG-~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 27 NSRVAIAG-LGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred cCCEEEEC-CCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 46899999 5999999999987 57887788888421 1111 00 01111001122222
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~G~~vVigtt 138 (163)
++.++++. ++|+|||.+.. +.-...-..|.+.|+|+|.+..
T Consensus 105 ~l~~~n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 105 GIGKENADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred ccCccCHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 35566664 89999999853 4445666889999999998743
No 148
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.09 E-value=0.0058 Score=52.79 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=58.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
..+|+|+| +|.||+.+++.+. ..+++++...++.....+... ..++.+. +++++.. +.|+|+...
T Consensus 17 gktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~~s~~~A~------~~G~~~~-s~~eaa~------~ADVVvLaV 81 (330)
T PRK05479 17 GKKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGSKSWKKAE------ADGFEVL-TVAEAAK------WADVIMILL 81 (330)
T ss_pred CCEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCchhhHHHHH------HCCCeeC-CHHHHHh------cCCEEEEcC
Confidence 46899999 7999999999987 568888755443221111111 2344444 7888875 899999666
Q ss_pred CchhHHHHH-H---HHHHcCCcEEEeCCCCCHHH
Q 031216 115 DASTVYDNV-K---QATAFGMRSVVYVPHIQLET 144 (163)
Q Consensus 115 ~p~~~~~~~-~---~al~~G~~vVigttg~~~e~ 144 (163)
+|+...+.+ . ..++.|.-+ +-..|++-..
T Consensus 82 Pd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~ 114 (330)
T PRK05479 82 PDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF 114 (330)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh
Confidence 665554444 2 223345444 5466776544
No 149
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.09 E-value=0.0049 Score=53.21 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhccCCC-----CCCcceeCCHHHHHhcccccC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQ-----PLEIPVMSDLTMVLGSISQSK 105 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~---~~~l~g~~~-----~~gi~v~~~l~ell~~~~~~~ 105 (163)
.+.+|.|.||+|.+|+.+++.+. ..|.++.|.++++..-+. +.++-+.+. ..++.-+++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 56789999999999999999998 689999999986432111 222222110 123344578899986
Q ss_pred CccEEEEccCc--------h---------hHHHHHHHHHHcC--CcEEE
Q 031216 106 ARAVVIDFTDA--------S---------TVYDNVKQATAFG--MRSVV 135 (163)
Q Consensus 106 ~~DVVIDfT~p--------~---------~~~~~~~~al~~G--~~vVi 135 (163)
.+|.|+....| + .+...++.|.+.. ++||.
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 89999986544 1 2345667888888 77765
No 150
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.07 E-value=0.0026 Score=50.33 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=60.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCc------chhhhccCC-CCCCcceeCCHHHHHhcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGE------DIGMVCDME-QPLEIPVMSDLTMVLGSI 101 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~------~~~~l~g~~-~~~gi~v~~~l~ell~~~ 101 (163)
|||+|+| +|++|-.++..+. ..|.+++| +|... .|. .+.+++... ...+...++++++++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEEC-CCcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 6999999 7999998888776 67899986 56321 111 112222100 0234456788888774
Q ss_pred cccCCccEEEEcc-Cc------------hhHHHHHHHHHHcCCcEEEeCC---CCCHHHH-HHHHHHh
Q 031216 102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETV-SALSAFC 152 (163)
Q Consensus 102 ~~~~~~DVVIDfT-~p------------~~~~~~~~~al~~G~~vVigtt---g~~~e~~-~~L~~~A 152 (163)
+.|+++.+- +| ..+.+.+...++.+.-||+.+| |.+++.. +.|++..
T Consensus 76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 799888543 23 1234455566677888888887 6766444 3444444
No 151
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.06 E-value=0.00098 Score=57.67 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=58.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecC-CCCc-----------chhhhccCCCCCCcceeCCHHH
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH-SVGE-----------DIGMVCDMEQPLEIPVMSDLTM 96 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~--------~eLvgvid~~-~~g~-----------~~~~l~g~~~~~gi~v~~~l~e 96 (163)
||+|+| +|.+|..++..+.+. + .++.--.... ..+. +..-+.+..-+.++..++|+++
T Consensus 1 kI~VIG-aG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE 78 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence 689999 599999999988753 3 4443222100 0011 1111112211334567799999
Q ss_pred HHhcccccCCccEEEEccCchhHHHHHH---HHHHcCCcEEEeCCCCCHH
Q 031216 97 VLGSISQSKARAVVIDFTDASTVYDNVK---QATAFGMRSVVYVPHIQLE 143 (163)
Q Consensus 97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~---~al~~G~~vVigttg~~~e 143 (163)
+++ ..|+||-..++....+.+. ..++.+.++|+-+-|++.+
T Consensus 79 al~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 79 AAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 885 8999884444444444343 3456677888877788655
No 152
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.04 E-value=0.0048 Score=48.22 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=54.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----C----------Ccc-h---hhhc-cCCCCCCccee-----
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----V----------GED-I---GMVC-DMEQPLEIPVM----- 91 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~----------g~~-~---~~l~-g~~~~~gi~v~----- 91 (163)
||+|+| .|.||..+++.+. ..++.=+-++|.+. . |+. + ...+ .+.....+..+
T Consensus 1 ~VlViG-~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 699999 5999999999987 46786555788431 1 110 0 0000 00001112111
Q ss_pred -CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHc-CCcEEEeC
Q 031216 92 -SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAF-GMRSVVYV 137 (163)
Q Consensus 92 -~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~-G~~vVigt 137 (163)
+++++.+. ++|+|||++..... ......+.++ ++++|.+.
T Consensus 79 ~~~~~~~l~------~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 79 ENNLEGLFG------DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred hhhHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 23345553 89999998744444 4466777777 99999864
No 153
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.03 E-value=0.0035 Score=53.66 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=57.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
.||+++| +|+||+.+++.+. ..+++++...++.. .....+. ..|+.++ +.+++.. ..|+|+....
T Consensus 4 kkIgiIG-~G~mG~AiA~~L~-~sG~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIG-YGSQGHAQALNLR-DSGLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP 68 (314)
T ss_pred CEEEEEe-EcHHHHHHHHHHH-HCCCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence 5799999 6999999999997 45777654444321 1112211 2345444 5777764 8999997777
Q ss_pred chhHHHH-H---HHHHHcCCcEEEeCCCCCHHHH
Q 031216 116 ASTVYDN-V---KQATAFGMRSVVYVPHIQLETV 145 (163)
Q Consensus 116 p~~~~~~-~---~~al~~G~~vVigttg~~~e~~ 145 (163)
|+..... . ...++.|. +|+=..|++-...
T Consensus 69 p~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~ 101 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHFV 101 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhhc
Confidence 7733332 2 23334453 6665668876553
No 154
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.02 E-value=0.011 Score=49.41 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=75.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---ccCCC-CC-----------CcceeCC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQ-PL-----------EIPVMSD 93 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l---~g~~~-~~-----------gi~v~~~ 93 (163)
+..||+|-| .|++|+..++.+. ..+.+++++.|+ .+.|-|+.++ ..... .. +.. +-+
T Consensus 37 ~g~~vaIqG-fGnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~ 113 (254)
T cd05313 37 KGKRVAISG-SGNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFE 113 (254)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeC
Confidence 457999999 7999999999887 579999999994 2456654443 11000 00 111 236
Q ss_pred HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216 94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t 160 (163)
.++++. .++||++=+..-... .+++....+.+..+|+|-. .++++..+.| ++.+|++.
T Consensus 114 ~~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L----~~rGI~vv 174 (254)
T cd05313 114 GKKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF----RQAGVLFA 174 (254)
T ss_pred Ccchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH----HHCCcEEE
Confidence 667776 599999955544443 5677766677999999887 3566443333 34466664
No 155
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.02 E-value=0.01 Score=47.55 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=45.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc----CCCCCCc--ce-eCCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g----~~~~~gi--~v-~~~l~ell~~~~~~~~~D 108 (163)
|||+|+|++|.||+.+++.+.+ .+.++.. .++.. .....+.. .....++ .+ ..+..+++. ..|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~------~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAAK------RAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHHh------cCC
Confidence 5899997569999999999874 5677764 45432 11111100 0001121 12 235556654 889
Q ss_pred EEEEccCchhHHHHHHH
Q 031216 109 VVIDFTDASTVYDNVKQ 125 (163)
Q Consensus 109 VVIDfT~p~~~~~~~~~ 125 (163)
+||-+..|....+.+..
T Consensus 71 vVilavp~~~~~~~l~~ 87 (219)
T TIGR01915 71 VVILAVPWDHVLKTLES 87 (219)
T ss_pred EEEEECCHHHHHHHHHH
Confidence 99966666655555543
No 156
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.0027 Score=53.73 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=55.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT- 114 (163)
|||.|+|++|.+|+.+.+.+. ++.++++..... .++.-.+.+.+++.+ .+||+||.+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence 469999999999999999886 788888654332 122223456777774 7899999863
Q ss_pred ---------Cch--------hHHHHHHHHHHcCCcEE
Q 031216 115 ---------DAS--------TVYDNVKQATAFGMRSV 134 (163)
Q Consensus 115 ---------~p~--------~~~~~~~~al~~G~~vV 134 (163)
.|+ .....+..|-+.|..+|
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV 96 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV 96 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence 222 22456678888998887
No 157
>PLN02858 fructose-bisphosphate aldolase
Probab=97.01 E-value=0.0094 Score=59.97 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=70.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.+.||+++| +|+||..+++.+. ..++++. +.|++. .....+. ..+....++++++.. .+|+||-+
T Consensus 323 ~~~~IGfIG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~ 387 (1378)
T PLN02858 323 PVKRIGFIG-LGAMGFGMASHLL-KSNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM 387 (1378)
T ss_pred CCCeEEEEC-chHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence 357899999 7999999999987 4678876 567532 2223332 234455678888875 89998854
Q ss_pred cC-chhHHHHH------HHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh--cCeE
Q 031216 114 TD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMV 158 (163)
Q Consensus 114 T~-p~~~~~~~------~~al~~G~~vVigttg~~~e~~~~L~~~A~~--~~Vv 158 (163)
-. |..+.+.+ ...++.|. +|+-.+..+++...+|.+.+++ .++-
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~ 440 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIK 440 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcE
Confidence 33 44444433 12234454 4454556667788888877766 5543
No 158
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.01 E-value=0.0048 Score=54.97 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=65.4
Q ss_pred ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA 106 (163)
Q Consensus 27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~ 106 (163)
++++....-.+|+|+| +|.+|+.+++.+.. -+++++ ++|++.. +..+.. ..|..+ .++++++. .
T Consensus 204 rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~-~Ga~Vi-V~d~dp~--ra~~A~----~~G~~v-~~l~eal~------~ 267 (425)
T PRK05476 204 RATNVLIAGKVVVVAG-YGDVGKGCAQRLRG-LGARVI-VTEVDPI--CALQAA----MDGFRV-MTMEEAAE------L 267 (425)
T ss_pred HhccCCCCCCEEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEcCCch--hhHHHH----hcCCEe-cCHHHHHh------C
Confidence 3445444456899999 69999999999875 477755 5664321 111110 123333 36788774 8
Q ss_pred ccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216 107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152 (163)
Q Consensus 107 ~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A 152 (163)
+|+||++|-.... .......++.|.-++.....-.+-+.+.|.+.+
T Consensus 268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA 314 (425)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence 9999998843333 334555667776555533322334455566654
No 159
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.01 E-value=0.0037 Score=52.79 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=28.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
|+||.|+|++|.+|+.+++.+.+..+.++.++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 578999999999999999999866678988764
No 160
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.00 E-value=0.0075 Score=53.45 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=67.5
Q ss_pred eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216 25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~ 104 (163)
|.+.++.....-+|+|+| +|.+|+.+++.+. .-+++++ ++|.+.. +..+.. ..|..+ .++++++.
T Consensus 185 i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak-~~Ga~Vi-V~d~dp~--r~~~A~----~~G~~v-~~leeal~----- 249 (406)
T TIGR00936 185 ILRATNLLIAGKTVVVAG-YGWCGKGIAMRAR-GMGARVI-VTEVDPI--RALEAA----MDGFRV-MTMEEAAK----- 249 (406)
T ss_pred HHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHh-hCcCEEE-EEeCChh--hHHHHH----hcCCEe-CCHHHHHh-----
Confidence 345566555557999999 6999999999887 5688865 4664321 111111 123333 35677764
Q ss_pred CCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216 105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (163)
Q Consensus 105 ~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~ 154 (163)
..|++|++|-.... .......++.|.-++...-+-..-+.+.|.+++.+
T Consensus 250 -~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 250 -IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred -cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 78999988744443 34455666777665543322112344556666544
No 161
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.99 E-value=0.0063 Score=52.50 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=59.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh-----------hhccCCCCCCccee
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG-----------MVCDMEQPLEIPVM 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~-----------~l~g~~~~~gi~v~ 91 (163)
..||+|+| +|.+|..+++.+. ..|+.-+.++|.+.. + .|++ .+..+.....+..+
T Consensus 24 ~~~VlIiG-~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVG-AGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999 5999999999987 568866678885421 0 0110 00001001112111
Q ss_pred ------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ------~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.++++++ .++|+|||++..... .-.-..|.+.|+|.|.+..
T Consensus 102 ~~~~~~~~~~~~~------~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~ 149 (338)
T PRK12475 102 VTDVTVEELEELV------KEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGC 149 (338)
T ss_pred eccCCHHHHHHHh------cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2345555 389999999855444 3444788899999997643
No 162
>PLN02858 fructose-bisphosphate aldolase
Probab=96.97 E-value=0.01 Score=59.66 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=70.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
-||+++| +|.||..+++.+.+ .+.++. +.|++. .....+. ..|..+.+++.++.. .+|+||-+-.
T Consensus 5 ~~IGfIG-LG~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~l~ 69 (1378)
T PLN02858 5 GVVGFVG-LDSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVVLS 69 (1378)
T ss_pred CeEEEEc-hhHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEEcC
Confidence 5799999 89999999999984 688876 677642 2233333 346677889999875 7899884332
Q ss_pred -chhHHHHH---HHHH---HcCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 031216 116 -ASTVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKAS 156 (163)
Q Consensus 116 -p~~~~~~~---~~al---~~G~~vVigttg~~~e~~~~L~~~A~~~~ 156 (163)
++.+.+.+ .-.+ ..| .+++-.+..+++...+|.+..++.|
T Consensus 70 ~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 70 HPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcC
Confidence 23333332 1122 234 3566666777888889988888877
No 163
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.96 E-value=0.006 Score=51.15 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=54.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hccCCCC--------CCcceeCCHHHHHhcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VCDMEQP--------LEIPVMSDLTMVLGSI 101 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~----l~g~~~~--------~gi~v~~~l~ell~~~ 101 (163)
+.||+|+| .|.||..++..+. ..+.++.. +|+.... ....+ ..+...+ ..+...+++++++.
T Consensus 4 ~~~I~vIG-aG~mG~~iA~~l~-~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 78 (311)
T PRK06130 4 IQNLAIIG-AGTMGSGIAALFA-RKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS-- 78 (311)
T ss_pred ccEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--
Confidence 46899999 5999999999987 46788774 5642110 00000 0110000 01334577877764
Q ss_pred cccCCccEEEEccCchh--HHHHH---HHHHHcCCcEEEeCCCCCHH
Q 031216 102 SQSKARAVVIDFTDAST--VYDNV---KQATAFGMRSVVYVPHIQLE 143 (163)
Q Consensus 102 ~~~~~~DVVIDfT~p~~--~~~~~---~~al~~G~~vVigttg~~~e 143 (163)
++|+||.+..+.. ..+.. ...+..+.-+++-|.+++.+
T Consensus 79 ----~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~ 121 (311)
T PRK06130 79 ----GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT 121 (311)
T ss_pred ----cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 8999997765543 12222 22233333344555577644
No 164
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.96 E-value=0.014 Score=48.37 Aligned_cols=84 Identities=12% Similarity=0.183 Sum_probs=50.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~--eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVID 112 (163)
+||+|+| +|.||..+++.+.+. +. ++. ++|++.. ...... ..++. .+.+++++. ++|+||.
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~-g~~~~v~-~~d~~~~--~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vil 64 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEK-GLISKVY-GYDHNEL--HLKKAL----ELGLVDEIVSFEELK-------KCDVIFL 64 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhc-CCCCEEE-EEcCCHH--HHHHHH----HCCCCcccCCHHHHh-------cCCEEEE
Confidence 4899999 699999999998754 43 554 4565321 111111 22321 234666642 5899997
Q ss_pred ccCchhHHHHHHHHH--HcCCcEEEe
Q 031216 113 FTDASTVYDNVKQAT--AFGMRSVVY 136 (163)
Q Consensus 113 fT~p~~~~~~~~~al--~~G~~vVig 136 (163)
++.|....+.+.... ..+. +|+-
T Consensus 65 avp~~~~~~~~~~l~~l~~~~-iv~d 89 (275)
T PRK08507 65 AIPVDAIIEILPKLLDIKENT-TIID 89 (275)
T ss_pred eCcHHHHHHHHHHHhccCCCC-EEEE
Confidence 777776666665443 2343 5553
No 165
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.92 E-value=0.0021 Score=54.52 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=58.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVIDf 113 (163)
..+++|+| +|.+|+.+++.+....+.+-+.+.+++.. +...+...-...++.+ ++++++++. ++|+||-+
T Consensus 125 ~~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~--~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVita 195 (304)
T PRK07340 125 PGDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAA--SAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTA 195 (304)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEc
Confidence 36899999 69999999999987667777778886531 1222221000112232 578988885 99999976
Q ss_pred cCchhHHHHHHHHHHcCCcEE-EeC
Q 031216 114 TDASTVYDNVKQATAFGMRSV-VYV 137 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vV-igt 137 (163)
|+... +.+...++.|.|+. ||.
T Consensus 196 T~s~~--Pl~~~~~~~g~hi~~iGs 218 (304)
T PRK07340 196 TTSRT--PVYPEAARAGRLVVAVGA 218 (304)
T ss_pred cCCCC--ceeCccCCCCCEEEecCC
Confidence 64322 22222368888877 443
No 166
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=96.90 E-value=0.0085 Score=52.80 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=63.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hccCCC--CCCcceeC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCDMEQ--PLEIPVMS 92 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~----------------l~g~~~--~~gi~v~~ 92 (163)
|.||+|.|+||-+|+..++.+.++|+ ++++++...+... +.+.+ +-..-. ..++.++.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 46899999999999999999888765 9999998743110 00000 000000 00234443
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt 138 (163)
..+.+. ++....++|+|+....=-....-...|+++|+.+-...-
T Consensus 81 G~~~l~-~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANK 125 (389)
T TIGR00243 81 GEEGIC-EMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANK 125 (389)
T ss_pred CHHHHH-HHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEech
Confidence 333322 122246789999655555556777888999999887554
No 167
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.90 E-value=0.0061 Score=52.28 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=59.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| .|.||+.+++.+.+.-++++.+ .|+... .. . ...+...+++++++. ..|+|+...
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~---~-----~~~~~~~~~l~ell~------~aDvIvl~l 208 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAKGYGSDVVA-YDPFPN-AK---A-----ATYVDYKDTIEEAVE------GADIVTLHM 208 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCcc-Hh---H-----HhhccccCCHHHHHH------hCCEEEEeC
Confidence 46899999 6999999999985445888875 564321 11 1 112233468999985 899988554
Q ss_pred CchhHHHH-----HHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216 115 DASTVYDN-----VKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (163)
Q Consensus 115 ~p~~~~~~-----~~~al~~G~~vVigttg~~~e~~~~L~~~A~~ 154 (163)
+......+ ....++.|.-+|--..|.-.++ +.|.++.+.
T Consensus 209 P~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~ 252 (332)
T PRK08605 209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDN 252 (332)
T ss_pred CCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHh
Confidence 22211122 2344566765554444543333 334444443
No 168
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.89 E-value=0.0086 Score=51.74 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=71.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEE-EEecC-----CCCcchhhhc-cCCCCCCcceeCCHHHHHhcccccCCc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG-AIDSH-----SVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKAR 107 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvg-vid~~-----~~g~~~~~l~-g~~~~~gi~v~~~l~ell~~~~~~~~~ 107 (163)
|+||+|+| .|..|..++..+.+. +.++.- ..|.. ...+.-..++ +..-+.++..++|++++++ .+
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~n-g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a 72 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARN-GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA 72 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhc-CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence 57999999 599999999998754 344432 22210 0011111222 2222556777899999985 79
Q ss_pred cEEEEccCchhH-HHHHH---HHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216 108 AVVIDFTDASTV-YDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (163)
Q Consensus 108 DVVIDfT~p~~~-~~~~~---~al~~G~~vVigttg~~~e~~~~L~~~A~~ 154 (163)
|+|+ +..|... .+.++ ..+..+..+|+.+-|+.++....+.+..++
T Consensus 73 d~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e 122 (329)
T COG0240 73 DIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE 122 (329)
T ss_pred CEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH
Confidence 9988 6656554 34443 356788999998889877666666666555
No 169
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.89 E-value=0.0093 Score=49.02 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=59.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-------chh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-------DIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~-------~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||.|+| .|.+|..+++.+. ..|+.=..++|.+.. ++ +++ .+..+.....+..+
T Consensus 24 ~~~VlvvG-~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 24 ASRVLIVG-LGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred CCcEEEEC-cCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 46899999 5999999999997 467777778884311 10 111 00000001112222
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigtt 138 (163)
+++++++ .++|+|||++.. +.-...-..|.++++|+|.|..
T Consensus 102 ~i~~~~~~~~~------~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 102 KLDDAELAALI------AEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred cCCHHHHHHHh------hcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1234455 389999999854 4445566889999999997653
No 170
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.88 E-value=0.014 Score=50.26 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=63.9
Q ss_pred cccccccccccceeeecc-CC-C---CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC
Q 031216 11 RMHHISQNVKAKRFISCS-TN-P---PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP 85 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~-~---~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~ 85 (163)
|++-..|.++.-.|-... .. + .-.-.++||+| +|++|+.+++.+. -=++++.. .++... ....+ .
T Consensus 117 ~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG-~GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~~------~ 186 (324)
T COG1052 117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG-LGRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAEK------E 186 (324)
T ss_pred chHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHHh------h
Confidence 344455666666665553 11 1 11237899999 8999999999987 66888875 454321 11111 1
Q ss_pred CCcceeCCHHHHHhcccccCCccEEEEccC--chhH-HHHHHHHHHcCCcEEEeCC
Q 031216 86 LEIPVMSDLTMVLGSISQSKARAVVIDFTD--ASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 86 ~gi~v~~~l~ell~~~~~~~~~DVVIDfT~--p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.+.. |-++++++. +.|+|+...+ |+.. .=+.+.....+..+++=.|
T Consensus 187 ~~~~-y~~l~ell~------~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 187 LGAR-YVDLDELLA------ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred cCce-eccHHHHHH------hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence 2223 445999996 8999886653 3332 2222333344444443344
No 171
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.83 E-value=0.0085 Score=49.53 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=77.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCCC-------------CcceeCCHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------------EIPVMSDLT 95 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~~-------------gi~v~~~l~ 95 (163)
+-.||+|-| .|++|+..++.+.+ .+..++++.|+. +.|.|..++..+.... +...+++-+
T Consensus 31 ~g~~v~IqG-fG~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 31 EGKRVAIQG-FGNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp TTCEEEEEE-SSHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 348999999 69999999999885 499999998843 4465655554321011 111222223
Q ss_pred HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216 96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 96 ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t 160 (163)
+++. .++|+++=+..+... .+++..-++.|.++|+|-. .++++... .-++.||++-
T Consensus 109 ~il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~rGI~vi 167 (244)
T PF00208_consen 109 EILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRERGILVI 167 (244)
T ss_dssp HGGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHTT-EEE
T ss_pred cccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHCCCEEE
Confidence 6775 599999988776666 5677767889999999887 45666543 4455666654
No 172
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.83 E-value=0.008 Score=49.66 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
|.|+|++|.+|+.+++.+.+ .+.++++++|+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHh-CCCceEEEecCC
Confidence 78999999999999999985 478888888864
No 173
>PLN02427 UDP-apiose/xylose synthase
Probab=96.83 E-value=0.0074 Score=51.82 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=30.1
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
+.+++||.|+|++|.+|+.+++.+.+..+.+++++.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 345689999999999999999999876568888764
No 174
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.82 E-value=0.0081 Score=51.54 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=57.1
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcchhhhc-cCCCCCCcceeCCHHHHHhccccc
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~~~~~l~-g~~~~~gi~v~~~l~ell~~~~~~ 104 (163)
.+|+||+|+| .|.||..++..+.+.. .++....++. .+.+...+. +..-+.++.+++|+++++.
T Consensus 5 ~~~mkI~IiG-aGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~----- 76 (341)
T PRK12439 5 KREPKVVVLG-GGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN----- 76 (341)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh-----
Confidence 4578999999 5999999999988653 2332222110 011111110 1100123456788888774
Q ss_pred CCccEEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCCH
Q 031216 105 KARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL 142 (163)
Q Consensus 105 ~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~~ 142 (163)
.+|+||-++.+....+.+... +..+.++|+-.-|++.
T Consensus 77 -~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 77 -CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred -cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 899988565555544444433 3445556665557754
No 175
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.79 E-value=0.0074 Score=52.83 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=53.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhccCCCCCCcceeCCHHH--HHhcccccCCccEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV 110 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~e---Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e--ll~~~~~~~~~DVV 110 (163)
+||+|+||+|..|+.+++.+.+++++. +..+.+++..|+.. .+-+ ....+ .++++ .+ .++|++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v-~~~~~~~~~------~~vDiv 68 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTL-QDAFDIDAL------KALDII 68 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceE-EcCcccccc------cCCCEE
Confidence 489999999999999999998777775 34333333333321 1111 12222 23322 34 389998
Q ss_pred EEccCchhH-HHHHHHHHHcCCc
Q 031216 111 IDFTDASTV-YDNVKQATAFGMR 132 (163)
Q Consensus 111 IDfT~p~~~-~~~~~~al~~G~~ 132 (163)
+ |+.+... .++...+.++|.+
T Consensus 69 f-fa~g~~~s~~~~p~~~~aG~~ 90 (366)
T TIGR01745 69 I-TCQGGDYTNEIYPKLRESGWQ 90 (366)
T ss_pred E-EcCCHHHHHHHHHHHHhCCCC
Confidence 8 6655554 6888999999964
No 176
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.77 E-value=0.03 Score=48.40 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=57.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEEEcc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
||+|+| +|.||..+++.+.+ .+.++. +++++.......... ..++. ..+++++++. ++|+||.++
T Consensus 2 ~I~iIG-~GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~------~aDlVilav 68 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAAA------EADLIVLAV 68 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHhc------CCCEEEEeC
Confidence 699999 79999999999875 455544 344322111111111 11221 2356777764 899999777
Q ss_pred CchhHHHHHHHHHHc--C-CcEEEeCCCCCHHHHHHHHHH
Q 031216 115 DASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAF 151 (163)
Q Consensus 115 ~p~~~~~~~~~al~~--G-~~vVigttg~~~e~~~~L~~~ 151 (163)
+|....+.+...... . -.+|+-..+...+..+.+.+.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 776656665554431 1 234443445555555555554
No 177
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.77 E-value=0.017 Score=44.10 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred eeEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~---mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
.+|+|+|+|-+ -+-.+.+.++ ..|.++.-+ .+...| .+++ |-++|.|+.++- +++|+|.-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV-NP~~~~---~eiL------G~k~y~sL~dIp------e~IDiVdv 79 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV-NPKLAG---EEIL------GEKVYPSLADIP------EPIDIVDV 79 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEee-Ccccch---HHhc------CchhhhcHHhCC------CCCcEEEE
Confidence 57999998865 4555667666 678998854 333333 3444 456889999976 49999888
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVS 146 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~ 146 (163)
|-.|+.+.++++.+++.|..++=.-.|...++..
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea~ 113 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEAA 113 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHHH
Confidence 9999999999999999999999777776444433
No 178
>PLN03139 formate dehydrogenase; Provisional
Probab=96.77 E-value=0.01 Score=52.26 Aligned_cols=66 Identities=20% Similarity=0.111 Sum_probs=46.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.-.+|+|+| .|+||+.+++.+. .-|+++.+ +|+... +.. .. ...++..++++++++. ..|+|+..
T Consensus 198 ~gktVGIVG-~G~IG~~vA~~L~-afG~~V~~-~d~~~~--~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~ 262 (386)
T PLN03139 198 EGKTVGTVG-AGRIGRLLLQRLK-PFNCNLLY-HDRLKM--DPE-LE---KETGAKFEEDLDAMLP------KCDVVVIN 262 (386)
T ss_pred CCCEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-ECCCCc--chh-hH---hhcCceecCCHHHHHh------hCCEEEEe
Confidence 346899999 7999999999997 47899875 675321 111 11 1234555579999985 89998855
Q ss_pred c
Q 031216 114 T 114 (163)
Q Consensus 114 T 114 (163)
.
T Consensus 263 l 263 (386)
T PLN03139 263 T 263 (386)
T ss_pred C
Confidence 4
No 179
>PLN02477 glutamate dehydrogenase
Probab=96.77 E-value=0.018 Score=51.16 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=73.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCCCC-------CCcceeCCHHHHHhcc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQP-------LEIPVMSDLTMVLGSI 101 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~~~-------~gi~v~~~l~ell~~~ 101 (163)
+..||+|.| .|++|+.+++.+. ..+.+|+++.|+. ..|-|+.++...... .+.. .-+.++++.
T Consensus 205 ~g~~VaIqG-fGnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~-- 279 (410)
T PLN02477 205 AGQTFVIQG-FGNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILV-- 279 (410)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCcccee--
Confidence 347999999 7999999999886 5799999999953 456676655321100 0111 124566665
Q ss_pred cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEc
Q 031216 102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~t 160 (163)
.++||++=+...... .+++. +-+..+|+|-. .++++..+.| ++.||++.
T Consensus 280 ---~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~rGI~~~ 331 (410)
T PLN02477 280 ---EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKKGVVVL 331 (410)
T ss_pred ---ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHCCcEEE
Confidence 599999955543333 34444 35899999877 4566654444 45577764
No 180
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.76 E-value=0.0083 Score=47.91 Aligned_cols=105 Identities=9% Similarity=0.172 Sum_probs=61.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.++|+|+| .|+||+.+++.+. ..+.+++ ++|+.. ....++.. ..+.... +.++++. .++|+++-++
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~-~~G~~Vv-v~D~~~--~~~~~~~~---~~g~~~v-~~~~l~~-----~~~Dv~vp~A 93 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLL-EEGAKLI-VADINE--EAVARAAE---LFGATVV-APEEIYS-----VDADVFAPCA 93 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHHH---HcCCEEE-cchhhcc-----ccCCEEEecc
Confidence 36899999 6999999999987 4689999 677542 12222211 2233333 3456664 4899988444
Q ss_pred CchhH-HHHHHHHHHcCCcEEEeCC--CCC-HHHHHHHHHHhhhcCeEEc
Q 031216 115 DASTV-YDNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMVST 160 (163)
Q Consensus 115 ~p~~~-~~~~~~al~~G~~vVigtt--g~~-~e~~~~L~~~A~~~~Vv~t 160 (163)
.-... .+.+ .+-+.++|++.. .++ ++. .+.-++.||+|-
T Consensus 94 ~~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~----~~~L~~~Gi~~~ 136 (200)
T cd01075 94 LGGVINDDTI---PQLKAKAIAGAANNQLADPRH----GQMLHERGILYA 136 (200)
T ss_pred cccccCHHHH---HHcCCCEEEECCcCccCCHhH----HHHHHHCCCEEe
Confidence 32222 2333 234577787765 244 333 333455566663
No 181
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.76 E-value=0.0095 Score=48.45 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=40.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
||.|+|++|.+|+.+++.+.+ .+.++.++..+ . .++ .-.+++++++.. .++|+||++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~r~-~-----~d~---------~~~~~~~~~~~~----~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-EGRVVVALTSS-Q-----LDL---------TDPEALERLLRA----IRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeCCc-c-----cCC---------CCHHHHHHHHHh----CCCCEEEECC
Confidence 689999999999999999885 58888765332 1 111 112355666653 4689999876
No 182
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.73 E-value=0.012 Score=48.78 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=56.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhc--c-CC------CCCCcceeCCHHH
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVC--D-ME------QPLEIPVMSDLTM 96 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~---------~~~l~--g-~~------~~~gi~v~~~l~e 96 (163)
+.||+|+| .|.||..++..+... +.+++. +|.+....+ ...+. + +. ...++.+++++++
T Consensus 3 ~~kI~VIG-~G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIG-AGTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEc-cCHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45899999 599999999998754 788775 564311000 00111 0 00 0013445677765
Q ss_pred HHhcccccCCccEEEEccCchhH-----HHHHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216 97 VLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETVS 146 (163)
Q Consensus 97 ll~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~G~~vVigttg~~~e~~~ 146 (163)
+ .++|+||.+..++.. ..-+...+..+..+++-|.+++..+..
T Consensus 80 -~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la 127 (282)
T PRK05808 80 -L------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELA 127 (282)
T ss_pred -h------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 3 389999977654322 222333334455554555577655433
No 183
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.73 E-value=0.029 Score=49.30 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=24.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
|||+|+| +|+||..++..+. . +.+++ ++|.
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~-G~~Vi-gvD~ 30 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-Q-NHEVV-ALDI 30 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-h-CCcEE-EEEC
Confidence 4899999 7999999997665 3 78877 4674
No 184
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.73 E-value=0.0072 Score=51.27 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVI 111 (163)
...||+|+| .|.||+.+++.+.. .+..-+.+++++. .+..++.. ..+.. .++++.+.+. ++|+||
T Consensus 177 ~~~~V~ViG-aG~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi 243 (311)
T cd05213 177 KGKKVLVIG-AGEMGELAAKHLAA-KGVAEITIANRTY--ERAEELAK---ELGGNAVPLDELLELLN------EADVVI 243 (311)
T ss_pred cCCEEEEEC-cHHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEE
Confidence 347899999 59999999999875 5555566777643 12222221 12222 2345566653 799999
Q ss_pred EccCchhHHHHHHHHH
Q 031216 112 DFTDASTVYDNVKQAT 127 (163)
Q Consensus 112 DfT~p~~~~~~~~~al 127 (163)
.+|......+.....+
T Consensus 244 ~at~~~~~~~~~~~~~ 259 (311)
T cd05213 244 SATGAPHYAKIVERAM 259 (311)
T ss_pred ECCCCCchHHHHHHHH
Confidence 8875444333334333
No 185
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.72 E-value=0.034 Score=46.45 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=69.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
++++|.|+|++ .=++.+++.+...+...++..... .|.+..+..+-....|-.=..-+-+.+. +.++|+|||.
T Consensus 1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~--~g~~l~~~~~~~~~~G~l~~e~l~~~l~----e~~i~llIDA 73 (257)
T COG2099 1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTG--YGAKLAEQIGPVRVGGFLGAEGLAAFLR----EEGIDLLIDA 73 (257)
T ss_pred CCceEEEEecc-HHHHHHHHHhhccCccEEEEEccc--ccccchhccCCeeecCcCCHHHHHHHHH----HcCCCEEEEC
Confidence 36889999964 668999999998885555433321 1222121110000000000123344555 4899999999
Q ss_pred cCchhH---HHHHHHHHHcCCcEE-EeCCCCCH--------HHHHHHHHHhhh--cCeEEc
Q 031216 114 TDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDK--ASMVST 160 (163)
Q Consensus 114 T~p~~~---~~~~~~al~~G~~vV-igttg~~~--------e~~~~L~~~A~~--~~Vv~t 160 (163)
|+|-+. ..-++.|.+.|++.+ .+-|++.. .+.+++.+++++ ..|++|
T Consensus 74 THPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt 134 (257)
T COG2099 74 THPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLT 134 (257)
T ss_pred CChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEEe
Confidence 999776 345588899999988 33443322 445566666665 345554
No 186
>PLN00016 RNA-binding protein; Provisional
Probab=96.72 E-value=0.01 Score=51.05 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=57.7
Q ss_pred CCeeEEEE----cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhccCCCCCCcc-eeCCHH---HHHhc
Q 031216 34 SNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLT---MVLGS 100 (163)
Q Consensus 34 ~~irV~Vv----Ga~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~-----~~l~g~~~~~gi~-v~~~l~---ell~~ 100 (163)
++.||.|+ |++|.+|+.+++.+.+ .+.++.++..+....... ..+..+. ..++. +..|+. +++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~- 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVA- 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhc-
Confidence 45789999 9999999999999885 589999877643211000 0000000 12233 234554 3443
Q ss_pred ccccCCccEEEEccCc--hhHHHHHHHHHHcCC-cEE
Q 031216 101 ISQSKARAVVIDFTDA--STVYDNVKQATAFGM-RSV 134 (163)
Q Consensus 101 ~~~~~~~DVVIDfT~p--~~~~~~~~~al~~G~-~vV 134 (163)
...+|+||++... ......+++|.+.|+ ++|
T Consensus 128 ---~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 128 ---GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred ---cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2579999987632 334566677777887 455
No 187
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.71 E-value=0.018 Score=48.30 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=57.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhccCC---------CCCCcceeCCHHH
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDME---------QPLEIPVMSDLTM 96 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~---------~~~l~g~~---------~~~gi~v~~~l~e 96 (163)
+-||+|+| .|.||+.++..+. ..|.+++ ++|......+ ...+.... ....+.+.+|+++
T Consensus 5 ~~~V~ViG-aG~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 5 IQRVGVVG-AGQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred ccEEEEEc-ccHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 45899999 5999999999887 5689877 5664321100 00111100 0012335678854
Q ss_pred HHhcccccCCccEEEEccCchhH------HHHHHHHH-HcCCcEEEeCCCCCHHHHHH
Q 031216 97 VLGSISQSKARAVVIDFTDASTV------YDNVKQAT-AFGMRSVVYVPHIQLETVSA 147 (163)
Q Consensus 97 ll~~~~~~~~~DVVIDfT~p~~~------~~~~~~al-~~G~~vVigttg~~~e~~~~ 147 (163)
+ .++|+||++- |+.. ...+...+ ..+..+++-|+.++..+...
T Consensus 82 -~------~~~d~ViEav-~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 82 -F------ADRQLVIEAV-VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred -h------CCCCEEEEec-ccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 4 3899999775 3332 22333334 45566666566776655443
No 188
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.70 E-value=0.015 Score=47.59 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=51.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCC-ccEEEEcc
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKA-RAVVIDFT 114 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~-~DVVIDfT 114 (163)
||.|+|++|.+|+.+++.+.+ .+.++.++..+..... ..+.. ...+..=.+++++++.....-.. +|.|+.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence 589999999999999999874 5889887766432100 00110 00011101334444420000014 88887655
Q ss_pred Cc-----hhHHHHHHHHHHcCCcEEE
Q 031216 115 DA-----STVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 115 ~p-----~~~~~~~~~al~~G~~vVi 135 (163)
.+ ......+.+|.++|+.-|+
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~gv~~~V 101 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSKGVRRFV 101 (285)
T ss_pred CCCCChhHHHHHHHHHHHHcCCCEEE
Confidence 32 1234566788889975444
No 189
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.68 E-value=0.0029 Score=53.81 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=56.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCC--CCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~--~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..+|+|+| +|.||+.+++.+....+.+=+-+.+++. .+..++...-.. ..+.+++++++++. +.|+|+-
T Consensus 125 ~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~ 195 (314)
T PRK06141 125 ASRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISC 195 (314)
T ss_pred CceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEE
Confidence 36899999 6999999998777645555555777642 122222211001 13556789998874 8999986
Q ss_pred ccCchhHHHHH-HHHHHcCCcEEE
Q 031216 113 FTDASTVYDNV-KQATAFGMRSVV 135 (163)
Q Consensus 113 fT~p~~~~~~~-~~al~~G~~vVi 135 (163)
+|... .+.+ ...++.|.++.+
T Consensus 196 aT~s~--~pvl~~~~l~~g~~i~~ 217 (314)
T PRK06141 196 ATLST--EPLVRGEWLKPGTHLDL 217 (314)
T ss_pred eeCCC--CCEecHHHcCCCCEEEe
Confidence 65432 1212 245678887654
No 190
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.67 E-value=0.0092 Score=48.15 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc------chh--------hhc-cCCCCCCccee---
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE------DIG--------MVC-DMEQPLEIPVM--- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~------~~~--------~l~-g~~~~~gi~v~--- 91 (163)
..||+|+| .|.+|..+++.+.. .|+.=..++|.+. .++ +++ +.+ .+.....+..+
T Consensus 28 ~~~V~ViG-~GglGs~ia~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 28 KAKVGIAG-AGGLGSNIAVALAR-SGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHH-cCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 46899999 59999999999974 5777666788431 010 000 000 00001112111
Q ss_pred ---CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHc-CCcEEEeC
Q 031216 92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAF-GMRSVVYV 137 (163)
Q Consensus 92 ---~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~-G~~vVigt 137 (163)
.++++.+ .++|+|||++. ++.-......|.+. ++|+|.+.
T Consensus 106 i~~~~~~~~~------~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 106 IDEDNIEELF------KDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred cCHHHHHHHH------cCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 1233455 38999999974 44435566788888 99999763
No 191
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.67 E-value=0.012 Score=52.95 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=58.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-----------cc--CCCCCCcceeCCHHHHHhcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-----------CD--MEQPLEIPVMSDLTMVLGSI 101 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l-----------~g--~~~~~gi~v~~~l~ell~~~ 101 (163)
+||+|+| +|.||..++..+.. .|+++. +.|+.... ....+. .+ ......+.+.+|+++++.
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-- 79 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-- 79 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence 4899999 69999999999874 588876 67753211 111100 00 000112566789988874
Q ss_pred cccCCccEEEEccCchhH-HH----HHHHHHHcCCcEEEeCCCCCHHHH
Q 031216 102 SQSKARAVVIDFTDASTV-YD----NVKQATAFGMRSVVYVPHIQLETV 145 (163)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~----~~~~al~~G~~vVigttg~~~e~~ 145 (163)
++|+|+....+... .. -+...+..+.-+.+-|.+++..+.
T Consensus 80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l 124 (495)
T PRK07531 80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL 124 (495)
T ss_pred ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 89999976644432 22 223333444445555557775543
No 192
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.67 E-value=0.038 Score=49.74 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=77.2
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---ccCC-----------C-CCCcceeCC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-----------Q-PLEIPVMSD 93 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l---~g~~-----------~-~~gi~v~~~ 93 (163)
+..||+|-| +|++|+..++.+. ..|.+++++.|+. +.|-|..++ .... . ..+... -+
T Consensus 236 ~Gk~VaVqG-~GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~-~~ 312 (454)
T PTZ00079 236 EGKTVVVSG-SGNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY-VP 312 (454)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE-eC
Confidence 347999999 7999999999987 5799999999953 456655443 1000 0 012222 23
Q ss_pred HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216 94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.++++. .++||++=+.+.+.. .+++....+.+..+|+|-. ..+++..+.| ++.+|++.+
T Consensus 313 ~~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L----~~~GI~~~P 374 (454)
T PTZ00079 313 GKKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF----KKNGVIFCP 374 (454)
T ss_pred CcCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH----HHCCcEEEC
Confidence 455554 589999966655444 6788888899999999877 3455543333 555777754
No 193
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.66 E-value=0.016 Score=50.33 Aligned_cols=92 Identities=22% Similarity=0.162 Sum_probs=58.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID 112 (163)
-+|+|+|+ |.+|...++.+.. -+.+++++-.+...-+++.++ |. +..+. .+.-+.+. ..+|++||
T Consensus 168 ~~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~~l-GA----d~~i~~~~~~~~~~~~-----~~~d~ii~ 235 (339)
T COG1064 168 KWVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEEKLELAKKL-GA----DHVINSSDSDALEAVK-----EIADAIID 235 (339)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHHHh-CC----cEEEEcCCchhhHHhH-----hhCcEEEE
Confidence 47999995 9999988888764 459999765443211222222 21 11111 12223332 24999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg 139 (163)
+..+....++++.....|.-+++|-++
T Consensus 236 tv~~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 236 TVGPATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CCChhhHHHHHHHHhcCCEEEEECCCC
Confidence 988666667777777788888888874
No 194
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.024 Score=47.89 Aligned_cols=122 Identities=15% Similarity=0.243 Sum_probs=75.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCC--------cEEEEEEecC--CCCcch------hhhcc-CCCCCCcceeCCHHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH--SVGEDI------GMVCD-MEQPLEIPVMSDLTM 96 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~--------~eLvgvid~~--~~g~~~------~~l~g-~~~~~gi~v~~~l~e 96 (163)
+.++|+++| +|.+|+.+++.+..... +.+++++|.. ...+|. .++.. +....+ .. -++++
T Consensus 2 k~vnVa~~G-~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~-~a-lsLda 78 (364)
T KOG0455|consen 2 KKVNVALMG-CGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG-SA-LSLDA 78 (364)
T ss_pred ccccEEEEe-ccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC-Cc-ccHHH
Confidence 358899999 69999999998876544 6889999842 111221 11110 000111 11 24666
Q ss_pred HHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC-CCC--HHHHHHHHHHhhhcCeE
Q 031216 97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ--LETVSALSAFCDKASMV 158 (163)
Q Consensus 97 ll~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt-g~~--~e~~~~L~~~A~~~~Vv 158 (163)
+++.+.-.+.+-+++|.|......+.....++.|+.++.-.. .++ .+..+.|....+..+.+
T Consensus 79 Lia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi 143 (364)
T KOG0455|consen 79 LIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFI 143 (364)
T ss_pred HHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceE
Confidence 665444446788999999888888989999999999764332 453 45555555544434443
No 195
>PRK07574 formate dehydrogenase; Provisional
Probab=96.64 E-value=0.024 Score=49.92 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=60.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| .|+||+.+++.+. .-++++.+ +|+.....+... ..++..+.++++++. ..|+|+...
T Consensus 192 gktVGIvG-~G~IG~~vA~~l~-~fG~~V~~-~dr~~~~~~~~~------~~g~~~~~~l~ell~------~aDvV~l~l 256 (385)
T PRK07574 192 GMTVGIVG-AGRIGLAVLRRLK-PFDVKLHY-TDRHRLPEEVEQ------ELGLTYHVSFDSLVS------VCDVVTIHC 256 (385)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCCchhhHh------hcCceecCCHHHHhh------cCCEEEEcC
Confidence 36899999 7999999999987 46888874 564321111111 234444679999985 899988554
Q ss_pred C--chhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216 115 D--ASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (163)
Q Consensus 115 ~--p~~~---~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~ 154 (163)
+ |+.. .+.....++.|.-+|--..|--- +.+.|.++.+.
T Consensus 257 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~AL~s 300 (385)
T PRK07574 257 PLHPETEHLFDADVLSRMKRGSYLVNTARGKIV-DRDAVVRALES 300 (385)
T ss_pred CCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh-hHHHHHHHHHh
Confidence 2 2211 12334456666554432223322 23445555444
No 196
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.63 E-value=0.0027 Score=49.50 Aligned_cols=86 Identities=22% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
...+|+|+| +|++|+.+++.+. .=|+++.+ +|+... +..... ..++ -+.++++++. ..|+|+..
T Consensus 35 ~g~tvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~--~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~ 98 (178)
T PF02826_consen 35 RGKTVGIIG-YGRIGRAVARRLK-AFGMRVIG-YDRSPK--PEEGAD----EFGV-EYVSLDELLA------QADIVSLH 98 (178)
T ss_dssp TTSEEEEES-TSHHHHHHHHHHH-HTT-EEEE-EESSCH--HHHHHH----HTTE-EESSHHHHHH------H-SEEEE-
T ss_pred CCCEEEEEE-EcCCcCeEeeeee-cCCceeEE-ecccCC--hhhhcc----cccc-eeeehhhhcc------hhhhhhhh
Confidence 357999999 7999999999987 56888885 554321 111011 2233 3579999996 89998855
Q ss_pred cC--chh---HHHHHHHHHHcCCcEEE
Q 031216 114 TD--AST---VYDNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T~--p~~---~~~~~~~al~~G~~vVi 135 (163)
.+ |+. ..+.....++.|.-+|-
T Consensus 99 ~plt~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 99 LPLTPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred hccccccceeeeeeeeeccccceEEEe
Confidence 42 222 12344445555654444
No 197
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.63 E-value=0.02 Score=50.12 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=47.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
..||+|+|.+|.||+.+++.+.+..+.++.| +|+...+ ..++++.+. ++|+||.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~~-----------------~~~~~~~v~------~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADPG-----------------SLDPATLLQ------RADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCccc-----------------cCCHHHHhc------CCCEEEEeC
Confidence 3689999944999999999998656888775 5642110 134555553 788888666
Q ss_pred CchhHHHHHHHHHH
Q 031216 115 DASTVYDNVKQATA 128 (163)
Q Consensus 115 ~p~~~~~~~~~al~ 128 (163)
++....+.+.....
T Consensus 60 Pv~~~~~~l~~l~~ 73 (370)
T PRK08818 60 PIRHTAALIEEYVA 73 (370)
T ss_pred CHHHHHHHHHHHhh
Confidence 66666666665554
No 198
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.63 E-value=0.014 Score=43.25 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=53.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-------hccCC-------------CCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-------VCDME-------------QPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~-------l~g~~-------------~~~gi~v~-- 91 (163)
..||+|+| +|.+|..+++.+.. .|+.=.-++|.+... .++.- -.|.. ....+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~-~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLAR-SGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHH-HTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEEC-cCHHHHHHHHHHHH-hCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 36899999 59999999999984 577666688843110 00000 00110 01111111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.+.++++. ++|+||+++.+... ......|.++++|+|.+.+
T Consensus 80 ~~~~~~~~~~~~------~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 80 KIDEENIEELLK------DYDIVIDCVDSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp HCSHHHHHHHHH------TSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred cccccccccccc------CCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 22334443 78888887755444 4555678888888876543
No 199
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=96.62 E-value=0.016 Score=43.66 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=60.9
Q ss_pred EEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCC------------------Ccchh-hhccCC--CCCCcceeCCHH
Q 031216 38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSV------------------GEDIG-MVCDME--QPLEIPVMSDLT 95 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~------------------g~~~~-~l~g~~--~~~gi~v~~~l~ 95 (163)
|.|.|+||-+|+..++.+.++| .++++++...+.. ..+.. .+.... ...++.++...+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 6899999999999999999988 7999999884311 00000 000000 123555554443
Q ss_pred HHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEE
Q 031216 96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 96 ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi 135 (163)
.+.+ +.+..++|+|+....=.....-...|+++|+.+-.
T Consensus 81 ~l~~-~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 81 GLEE-LAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHH-HHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred HHHH-HhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 3221 22247899999665555667888889999999876
No 200
>PLN02778 3,5-epimerase/4-reductase
Probab=96.60 E-value=0.025 Score=47.35 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEE
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG 65 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvg 65 (163)
|....+||.|+|++|.+|+.+++.+.+ .+.+++.
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~~ 38 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFHY 38 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEEE
Confidence 445568999999999999999999875 4677753
No 201
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.59 E-value=0.018 Score=49.02 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=63.8
Q ss_pred ccccccceeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc-ceeCCH
Q 031216 16 SQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDL 94 (163)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi-~v~~~l 94 (163)
.++++..+|-. .....-.-.+|+|+| +|+||+.+++.+. .-|+++.+ +|+... + .+. ..+.++
T Consensus 104 ~~~~~~g~w~~-~~~~~L~gktvgIiG-~G~IG~~vA~~l~-afG~~V~~-~~r~~~--~----------~~~~~~~~~l 167 (303)
T PRK06436 104 NYNMKNGNFKQ-SPTKLLYNKSLGILG-YGGIGRRVALLAK-AFGMNIYA-YTRSYV--N----------DGISSIYMEP 167 (303)
T ss_pred HHHHHcCCCCC-CCCCCCCCCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCCCc--c----------cCcccccCCH
Confidence 34455555532 111222347899999 7999999999775 45899875 454321 1 111 125689
Q ss_pred HHHHhcccccCCccEEEEccC--chhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216 95 TMVLGSISQSKARAVVIDFTD--ASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (163)
Q Consensus 95 ~ell~~~~~~~~~DVVIDfT~--p~~~---~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~ 155 (163)
++++. +.|+|+...+ |+.- ..-....++.|.-+|--..|--. +.+.|.++.++.
T Consensus 168 ~ell~------~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~v-d~~aL~~aL~~g 226 (303)
T PRK06436 168 EDIMK------KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVV-DKNDMLNFLRNH 226 (303)
T ss_pred HHHHh------hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCcccc-CHHHHHHHHHcC
Confidence 99985 8999885442 2211 12233445566544432223222 234455444443
No 202
>PRK08328 hypothetical protein; Provisional
Probab=96.59 E-value=0.024 Score=46.18 Aligned_cols=95 Identities=24% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchhh----------hccCCCCCCcce-
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIGM----------VCDMEQPLEIPV- 90 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~~----------l~g~~~~~gi~v- 90 (163)
+..||+|+| +|..|..+++.+. ..|+.=..++|.+.. + .+++. +..+ ..++.+
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~--np~v~v~ 101 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF--NSDIKIE 101 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh--CCCCEEE
Confidence 346899999 5999999999987 567766667784210 0 11111 0000 112222
Q ss_pred -e------CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeCC
Q 031216 91 -M------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 91 -~------~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigtt 138 (163)
+ .++++++. +.|+|||++.. +.-...-..|.++|+|+|.|.+
T Consensus 102 ~~~~~~~~~~~~~~l~------~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 102 TFVGRLSEENIDEVLK------GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred EEeccCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 1 23445553 89999998844 3334444678999999997654
No 203
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.59 E-value=0.018 Score=51.11 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=26.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+++||+|+| +|+||.-++..+.+ +.++++ +|.
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~--~~~V~g-~D~ 36 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK--SRQVVG-FDV 36 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc--CCEEEE-EeC
Confidence 458999999 89999999998764 588875 674
No 204
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.58 E-value=0.016 Score=51.50 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=54.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhccCCCCCCcce-eCC-HHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV-MSD-LTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~--~~~~l~g~~~~~gi~v-~~~-l~ell~~~~~~~~~DVV 110 (163)
.+||.|+|++|.+|+.+++.+.+ .+.+++++ |+...+. +...+.+ ..++.+ ..| +++.+ .++|+|
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~l-dr~~~~~~~~~~~~~~---~~~~~~~~~Di~~~~~------~~~D~V 188 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIVI-DNFFTGRKENLVHLFG---NPRFELIRHDVVEPIL------LEVDQI 188 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHH-CCCEEEEE-eCCCCccHhHhhhhcc---CCceEEEECccccccc------cCCCEE
Confidence 48999999999999999999885 57898864 4322111 1111111 112211 122 23333 379999
Q ss_pred EEccC---ch---------------hHHHHHHHHHHcCCcEEEe
Q 031216 111 IDFTD---AS---------------TVYDNVKQATAFGMRSVVY 136 (163)
Q Consensus 111 IDfT~---p~---------------~~~~~~~~al~~G~~vVig 136 (163)
|.+.. +. .....+..|.+.|+++|.-
T Consensus 189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 98763 11 1234556777788887743
No 205
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.58 E-value=0.017 Score=48.14 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=51.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
+||.|+|++|.+|+.+++.+.+. + ++++ +++... .+ ..++.=...++++++. .++|+||++..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DY-----CGDFSNPEGVAETVRK----IRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----cc-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence 48999999999999999998754 4 5554 443210 00 0111111244555652 47999998742
Q ss_pred ----------chh--------HHHHHHHHHHcCCcEEEeCC
Q 031216 116 ----------AST--------VYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 116 ----------p~~--------~~~~~~~al~~G~~vVigtt 138 (163)
|+. ....++.|.+.|+++|.-.|
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 211 22455677788888874443
No 206
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.57 E-value=0.012 Score=50.72 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=58.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh----------hhc-cCCCCCCccee
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG----------MVC-DMEQPLEIPVM 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~----------~l~-g~~~~~gi~v~ 91 (163)
..||.|+|+ |.+|..++..+. ..|+.=+.++|.+.. + .|++ +.+ .+.....+..+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 468999995 999999999987 568866678885310 0 1111 000 00001111111
Q ss_pred ------CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCC
Q 031216 92 ------SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ------~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigtt 138 (163)
+++++++ .++|+|||++. ++.-......|.+.++|+|.+..
T Consensus 102 ~~~~~~~~~~~~~------~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 102 VQDVTAEELEELV------TGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred eccCCHHHHHHHH------cCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 2334555 37999999985 44445566888999999997553
No 207
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.57 E-value=0.013 Score=48.85 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=54.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hc---cCC-------CCCCcceeCCHH
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DME-------QPLEIPVMSDLT 95 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~--------l~---g~~-------~~~gi~v~~~l~ 95 (163)
+.||+|+| .|.||..++..+. ..+.++. ++|++... +.+.+ +. ... ...++.+++|++
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la-~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTA-FHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHH-hcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 35899999 5999999999887 4577765 45643110 00000 00 000 012455678998
Q ss_pred HHHhcccccCCccEEEEccCchh--H-HHH---HHHHHHcCCcEEEeCCCCCHHH
Q 031216 96 MVLGSISQSKARAVVIDFTDAST--V-YDN---VKQATAFGMRSVVYVPHIQLET 144 (163)
Q Consensus 96 ell~~~~~~~~~DVVIDfT~p~~--~-~~~---~~~al~~G~~vVigttg~~~e~ 144 (163)
+++. ++|+||.+. |+. . .+. +...+..+..+++-++.++..+
T Consensus 80 ~a~~------~aDlVieav-pe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 80 EAVK------DADLVIEAV-PEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred HHhc------CCCEEEEec-cCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 8774 899999654 433 2 222 2333333443434444565544
No 208
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.56 E-value=0.019 Score=49.32 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cc--------hhhh--ccCC---CCCCcceeCCHHHHH
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-ED--------IGMV--CDME---QPLEIPVMSDLTMVL 98 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~--------~~~l--~g~~---~~~gi~v~~~l~ell 98 (163)
+...||+|+| +|-||+.++..+. ..|+++. ++|..... .+ ...+ .+.. ....+...+++++++
T Consensus 5 ~~i~~VaVIG-aG~MG~giA~~~a-~aG~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 5 TDIKTFAAIG-SGVIGSGWVARAL-AHGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV 81 (321)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh
Confidence 3456899999 5999999999887 5699988 57743210 00 0000 0000 012334567888877
Q ss_pred hcccccCCccEEEEcc
Q 031216 99 GSISQSKARAVVIDFT 114 (163)
Q Consensus 99 ~~~~~~~~~DVVIDfT 114 (163)
. ++|+||+..
T Consensus 82 ~------~aDlViEav 91 (321)
T PRK07066 82 A------DADFIQESA 91 (321)
T ss_pred c------CCCEEEECC
Confidence 4 788888764
No 209
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.54 E-value=0.025 Score=45.08 Aligned_cols=95 Identities=20% Similarity=0.359 Sum_probs=56.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc----hh-hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED----IG-MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~----------------g~~----~~-~l~g~~~~~gi~v~-- 91 (163)
..||.|+| +|.+|..+++.+. ..|+.=+-++|.+.. |+. +. .+..+.....+..+
T Consensus 21 ~~~VlviG-~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 21 NSHVLIIG-AGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred CCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 46899999 5999999999987 457754557784310 110 00 11011001111111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigt 137 (163)
.++++.+ .++|+||+++. ++.-....+.|.++++++|.+.
T Consensus 99 ~i~~~~~~~~~------~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 99 RVTAENLELLI------NNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred cCCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1234445 38999999884 4433456678899999998654
No 210
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.51 E-value=0.025 Score=48.72 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
-.+..+||.|+|++|.+|+.+++.+.+ .+.++.++..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKA-EGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHh-CCCEEEEEEe
Confidence 344668999999999999999999985 5889987654
No 211
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.49 E-value=0.008 Score=47.17 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=50.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hccCC---------CCCCcceeCCHHHHH
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VCDME---------QPLEIPVMSDLTMVL 98 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-----~~~~~----l~g~~---------~~~gi~v~~~l~ell 98 (163)
||+|+|+ |.||+.++..+.. .|+++. ++|..... ..+.. +.... ....+.+++|++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFAR-AGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHH-TTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred CEEEEcC-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence 7999995 9999999998875 499988 56743110 01111 00000 012345668887763
Q ss_pred hcccccCCccEEEEccCchh-----HHHHHHHHHHcCCcEEEeCCCCCHHH
Q 031216 99 GSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLET 144 (163)
Q Consensus 99 ~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigttg~~~e~ 144 (163)
++|+||++..-+. ....+...+.....+.+-|.+++..+
T Consensus 78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 7899998873222 12222222333444444444665544
No 212
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.49 E-value=0.0046 Score=46.22 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
+..|+.|+|+ |+||+.++..+... +++=+-+++|+. ..+++.+..+.. ...+.-++++.+.+. ++|+||.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~------~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQ------EADIVIN 81 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHH------TESEEEE
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHh------hCCeEEE
Confidence 3478999995 99999999999865 777555677653 112222222100 112233567776664 8999997
Q ss_pred ccC
Q 031216 113 FTD 115 (163)
Q Consensus 113 fT~ 115 (163)
+|.
T Consensus 82 aT~ 84 (135)
T PF01488_consen 82 ATP 84 (135)
T ss_dssp -SS
T ss_pred ecC
Confidence 764
No 213
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.49 E-value=0.041 Score=49.68 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=63.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCC-------CC------cchhhhccCCCCCCcceeCCHHHHHhc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHS-------VG------EDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgvid~~~-------~g------~~~~~l~g~~~~~gi~v~~~l~ell~~ 100 (163)
|+||+|+| +|++|..++-.+.+. .+.+++++ |... .| ....+++.........+++++++++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~- 77 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA- 77 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence 58999999 699999998888765 37888875 6320 01 11222221000012455677777664
Q ss_pred ccccCCccEEEEcc-Cchh-------------H----HHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHH
Q 031216 101 ISQSKARAVVIDFT-DAST-------------V----YDNVKQATAFGMRSVVYVP---HIQLETVSALSA 150 (163)
Q Consensus 101 ~~~~~~~DVVIDfT-~p~~-------------~----~~~~~~al~~G~~vVigtt---g~~~e~~~~L~~ 150 (163)
++|++|.+- +|.. . .+.+...++.|.-||+.+| |.+.+-.+.|.+
T Consensus 78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 899887653 3431 1 1222233456777887777 666655555554
No 214
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.48 E-value=0.024 Score=46.61 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=58.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhccCCCCCCccee-
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVM- 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~---------~l~g~~~~~gi~v~- 91 (163)
+..||+|+| .|..|..+++.+. ..|+.=..++|.+.. + .+++ .+..+.....+..+
T Consensus 31 ~~~~VliiG-~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 31 KAARVLVVG-LGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred cCCeEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 346899999 5999999999987 567766667884210 0 0111 01001001112111
Q ss_pred -----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 -----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 -----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.+.++++ .++|+|||++..... ...-..|.++++|+|.+..
T Consensus 109 ~~i~~~~~~~~~------~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 109 ARLDDDELAALI------AGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred ccCCHHHHHHHH------hcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeee
Confidence 1223444 389999999854444 4455788999999997543
No 215
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.48 E-value=0.049 Score=51.04 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=60.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhccCCCCCCcc--eeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgvid~~~~g~~~~~l~g~~~~~gi~--v~~~l~ell~~~~~~~~~DVVID 112 (163)
.||+|+| +|.||..+++.+.+.. ..++. ++|+... +..... ..++. ...++++++. ++|+||.
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~V~-~~d~~~~--~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil 69 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAREVV-AVDRRAK--SLELAV----SLGVIDRGEEDLAEAVS------GADVIVL 69 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCEEE-EEECChh--HHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence 5799999 6999999999987542 23544 4675421 111111 12322 3456777764 8899997
Q ss_pred ccCchhHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHHh
Q 031216 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC 152 (163)
Q Consensus 113 fT~p~~~~~~~~~al~--~G~~vVigttg~~~e~~~~L~~~A 152 (163)
++.|....+.+..... ....+|+-..+......+.+.+..
T Consensus 70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 7766655555444332 223455544555545555666553
No 216
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.47 E-value=0.029 Score=44.66 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=58.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchhh---------hccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIGM---------VCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~~---------l~g~~~~~gi~v~-- 91 (163)
..||.|+| +|..|.++++.+. ..|+.=.-++|.+.. + .++++ +..+.....+..+
T Consensus 21 ~s~VlIiG-~gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 21 SARILLIG-LKGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred hCcEEEEc-CCHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 36899999 5999999999997 678887778885321 0 01110 1011001112111
Q ss_pred ---CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ---~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
++.++.+ .++|+||+.+.+... ...-+.|.++|+|+|.+-+
T Consensus 99 ~~~~~~~~~~------~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~ 143 (197)
T cd01492 99 DISEKPEEFF------SQFDVVVATELSRAELVKINELCRKLGVKFYATGV 143 (197)
T ss_pred CccccHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2233444 388999988755444 4566788999999986554
No 217
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.45 E-value=0.019 Score=47.18 Aligned_cols=97 Identities=25% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEE--EecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA--IDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAV 109 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgv--id~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DV 109 (163)
++.||+|+| +|++|..+.-.+.++ .-+|.-.. +|+...|..-.. ++|++-+ ..++-++.. -.-.++|.
T Consensus 3 sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraa------rlgv~tt~egv~~ll~~-p~~~di~l 74 (310)
T COG4569 3 SKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAA------RLGVATTHEGVIGLLNM-PEFADIDL 74 (310)
T ss_pred CcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHH------hcCCcchhhHHHHHHhC-CCCCCcce
Confidence 468999999 899998866555555 44444433 444333321111 3344432 334444431 11134568
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigtt 138 (163)
|+|.|+.-.+.+++.++.+.|++.+==||
T Consensus 75 vfdatsa~~h~~~a~~~ae~gi~~idltp 103 (310)
T COG4569 75 VFDATSAGAHVKNAAALAEAGIRLIDLTP 103 (310)
T ss_pred EEeccccchhhcchHhHHhcCCceeecch
Confidence 99999999999999999999999886555
No 218
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=96.43 E-value=0.0027 Score=55.02 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDf 113 (163)
|. |+|.| +|-.-+..+-.+.+.+ +++-++..+... .+.+.. ....++.| +.+|+.+.. ..+|.|...
T Consensus 3 Pg-v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~~--ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~ 70 (367)
T KOG2742|consen 3 PG-VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTKT--EAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCIS 70 (367)
T ss_pred Cc-eeEec-cChhHhhhhhhhhhcc-chHhhhhchhhh--HHHHhh---hccchhhccccchhhhcc----CCcceeEec
Confidence 45 99999 7999999888777655 888877766321 111111 13345544 688998763 678876655
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhh
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~ 154 (163)
-.|.-+.+++..++..|+|||++++..+.++..++.++++.
T Consensus 71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s 111 (367)
T KOG2742|consen 71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS 111 (367)
T ss_pred cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhc
Confidence 67777899999999999999999998777777777777543
No 219
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.41 E-value=0.023 Score=52.81 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+++||.|.|++|.+|+.+++.+.++.+.+++++..
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 45789999999999999999998766899998643
No 220
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.40 E-value=0.031 Score=45.21 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||+|+| +|..|..+++.+. ..|+.-..++|.+. .++ +++ .+..+.....+..+
T Consensus 21 ~~~VlivG-~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 46899999 5999999999997 56787777888421 110 111 00000000112111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigt 137 (163)
+++++++. ++|+||+++. ++.-...-+.|.++++|+|.+-
T Consensus 99 ~i~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 99 RLDAENAEELIA------GYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred eeCHHHHHHHHh------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 22344553 7999998874 4443455678889999998643
No 221
>PLN02522 ATP citrate (pro-S)-lyase
Probab=96.39 E-value=0.021 Score=53.09 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=74.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh------cCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTK------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~------~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D 108 (163)
..|-.++| . ....++.+.+ .+.-.+++++-+.. +.-..-+.|.. ..++|||++.+|+.++ ..++|
T Consensus 10 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~-~~~iPVf~tv~eA~~~---~~~~~ 80 (608)
T PLN02522 10 TTQALFYN-Y---KQLPVQRMLDFDFLCGRETPSVAGIINPGS-EGFQKLFFGQE-EIAIPVHGSIEAACKA---HPTAD 80 (608)
T ss_pred CceeEEEc-C---cHHHHHhhhccceeccCCCCeeEEEEcCCC-CcceeEecCCE-eeCccccchHHHHHHh---CCCCc
Confidence 35778887 3 3333333322 22234455554422 11111223432 5689999999999974 23789
Q ss_pred EEEEccCchhHHH-HHHHHHHcCCcEE-EeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 109 VVIDFTDASTVYD-NVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 109 VVIDfT~p~~~~~-~~~~al~~G~~vV-igttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
+.+.|.+|..+.+ .++.+.+.|++.+ +=|.|+.+.+..+|.++|++.++-.-|
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIG 135 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIG 135 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEEC
Confidence 9998998887765 5555556798755 445588877788999999998876654
No 222
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.38 E-value=0.027 Score=50.07 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhccCCCCCCcce-e-CCHHHHHhcccccCCccEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV-M-SDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~--~~~~l~g~~~~~gi~v-~-~~l~ell~~~~~~~~~DVVI 111 (163)
+||.|+|++|.+|+.+++.+.+ .+.+++++ |+...+. ....... ..++.. . +-+++++ .++|+||
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l-d~~~~~~~~~~~~~~~---~~~~~~i~~D~~~~~l------~~~D~Vi 188 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV-DNFFTGRKENVMHHFS---NPNFELIRHDVVEPIL------LEVDQIY 188 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHH-CcCEEEEE-eCCCccchhhhhhhcc---CCceEEEECCccChhh------cCCCEEE
Confidence 7999999999999999999985 58888865 4321111 1111111 111211 1 2233444 3799999
Q ss_pred EccC---ch---------------hHHHHHHHHHHcCCcEEEeC
Q 031216 112 DFTD---AS---------------TVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 112 DfT~---p~---------------~~~~~~~~al~~G~~vVigt 137 (163)
.+.. |. .....+.+|.+.|+++|.-.
T Consensus 189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~S 232 (442)
T PLN02206 189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 232 (442)
T ss_pred EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 8762 11 12345677888898877433
No 223
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.38 E-value=0.039 Score=48.74 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=26.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
++||+|+| +|+||..++..+.+ .|.++.+ +|+
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~-~G~~V~~-~D~ 34 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFAS-RQKQVIG-VDI 34 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHh-CCCEEEE-EeC
Confidence 57999999 79999999999874 5788875 564
No 224
>PRK07411 hypothetical protein; Validated
Probab=96.37 E-value=0.028 Score=49.40 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=59.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||+|+| +|..|..+++.+. ..|+.=..++|.+. .++ +++ .+..+.....+..+
T Consensus 38 ~~~VlivG-~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIG-TGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 46899999 5999999999987 67888888888421 111 111 00011001112212
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.+.++++. ++|+|||++..-.. .-.-..|.+.++|.|.|..
T Consensus 116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~ 161 (390)
T PRK07411 116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSI 161 (390)
T ss_pred ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 12234553 89999999865444 4455788999999997654
No 225
>PLN02494 adenosylhomocysteinase
Probab=96.37 E-value=0.026 Score=51.04 Aligned_cols=112 Identities=11% Similarity=0.052 Sum_probs=65.7
Q ss_pred eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216 25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~ 104 (163)
|.+.++..-.-.+|+|+| +|.+|+.+++.+.. -+++++ ++++... ...+.. ..+..+ .++++++.
T Consensus 244 i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka-~Ga~VI-V~e~dp~--r~~eA~----~~G~~v-v~leEal~----- 308 (477)
T PLN02494 244 LMRATDVMIAGKVAVICG-YGDVGKGCAAAMKA-AGARVI-VTEIDPI--CALQAL----MEGYQV-LTLEDVVS----- 308 (477)
T ss_pred HHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEE-EEeCCch--hhHHHH----hcCCee-ccHHHHHh-----
Confidence 456667655567899999 69999999999874 488865 4654321 101111 123333 26788774
Q ss_pred CCccEEEEccCchh-HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216 105 KARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152 (163)
Q Consensus 105 ~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A 152 (163)
..|++|..|-... ........++.|--++.-.-.-+.-+.+.|.+++
T Consensus 309 -~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~ 356 (477)
T PLN02494 309 -EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYP 356 (477)
T ss_pred -hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhcc
Confidence 8999997664333 3344555666665554321111344455666653
No 226
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.37 E-value=0.026 Score=48.53 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=59.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| +|+||+.+++.+. .-|+++. ++|+..... ... ..+.. +.++++++. ..|+|+...
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~~~~-~~~------~~~~~-~~~l~ell~------~aDiV~l~l 212 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAK-GFGMRIL-YYSRTRKPE-AEK------ELGAE-YRPLEELLR------ESDFVSLHV 212 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCCChh-hHH------HcCCE-ecCHHHHHh------hCCEEEEeC
Confidence 47899999 7999999999987 4588876 567542111 111 12332 468999985 899998555
Q ss_pred Cch-hHH----HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216 115 DAS-TVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (163)
Q Consensus 115 ~p~-~~~----~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~ 155 (163)
+.+ ... +.....++.|.-+|--..|--.+ .+.|.++.++-
T Consensus 213 P~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd-~~aL~~aL~~g 257 (333)
T PRK13243 213 PLTKETYHMINEERLKLMKPTAILVNTARGKVVD-TKALVKALKEG 257 (333)
T ss_pred CCChHHhhccCHHHHhcCCCCeEEEECcCchhcC-HHHHHHHHHcC
Confidence 221 112 23344455665555433343222 24455554443
No 227
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.36 E-value=0.016 Score=45.55 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=52.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
..+|+|+| +|..|+.++..+. ..+++++-........++-.+-. |..+ .+++|+.. ..|+|+ ..
T Consensus 4 ~k~IAViG-yGsQG~a~AlNLr-DSG~~V~Vglr~~s~s~~~A~~~------Gf~v-~~~~eAv~------~aDvV~-~L 67 (165)
T PF07991_consen 4 GKTIAVIG-YGSQGHAHALNLR-DSGVNVIVGLREGSASWEKAKAD------GFEV-MSVAEAVK------KADVVM-LL 67 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTCHHHHHHHHT------T-EC-CEHHHHHH------C-SEEE-E-
T ss_pred CCEEEEEC-CChHHHHHHHHHH-hCCCCEEEEecCCCcCHHHHHHC------CCee-ccHHHHHh------hCCEEE-Ee
Confidence 46899999 7999999999987 57898886555432223333322 3333 37788875 899988 44
Q ss_pred CchhH-----HHHHHHHHHcCCcEEEeCCCC
Q 031216 115 DASTV-----YDNVKQATAFGMRSVVYVPHI 140 (163)
Q Consensus 115 ~p~~~-----~~~~~~al~~G~~vVigttg~ 140 (163)
.|+.. .+.+...++.|.-++. ..||
T Consensus 68 ~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGf 97 (165)
T PF07991_consen 68 LPDEVQPEVYEEEIAPNLKPGATLVF-AHGF 97 (165)
T ss_dssp S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSH
T ss_pred CChHHHHHHHHHHHHhhCCCCCEEEe-CCcc
Confidence 45443 3555667888876654 4454
No 228
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.35 E-value=0.0063 Score=52.01 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=56.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCCc--ceeCCHHHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~gi--~v~~~l~ell~~~~~~~~~DVVI 111 (163)
..+++|+| +|.+|+.++..+....+++-+.+++++.. .+..+.. +....++ ..++|+++++. ++|+|+
T Consensus 132 ~~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~--~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi 202 (330)
T PRK08291 132 ASRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAA--KAEAYAADLRAELGIPVTVARDVHEAVA------GADIIV 202 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEE
Confidence 36899999 69999999999886667888888886531 2222211 0012233 34789999885 789998
Q ss_pred EccCchhHHHHHH-HHHHcCCcEE
Q 031216 112 DFTDASTVYDNVK-QATAFGMRSV 134 (163)
Q Consensus 112 DfT~p~~~~~~~~-~al~~G~~vV 134 (163)
..|. ... +.+. ..++.|.|+.
T Consensus 203 ~aT~-s~~-p~i~~~~l~~g~~v~ 224 (330)
T PRK08291 203 TTTP-SEE-PILKAEWLHPGLHVT 224 (330)
T ss_pred EeeC-CCC-cEecHHHcCCCceEE
Confidence 6653 221 2222 2367787765
No 229
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.34 E-value=0.029 Score=46.69 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
.||+|+| .|.||..++..+. ..+.+++ ++|+.
T Consensus 5 ~kI~vIG-aG~mG~~iA~~la-~~G~~V~-l~d~~ 36 (292)
T PRK07530 5 KKVGVIG-AGQMGNGIAHVCA-LAGYDVL-LNDVS 36 (292)
T ss_pred CEEEEEC-CcHHHHHHHHHHH-HCCCeEE-EEeCC
Confidence 5799999 5999999999987 4688877 56743
No 230
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.34 E-value=0.0068 Score=51.78 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=59.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CCCCCc--ceeCCHHHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~~~gi--~v~~~l~ell~~~~~~~~~DVVI 111 (163)
..+++|+| +|.+|+.+++.+....+++-+.+++++. .++.++... ....++ ..++++++++. +.|+|+
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVv 199 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIV 199 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEE
Confidence 46899999 6999999999998667888888888653 122222210 011233 34689999885 899999
Q ss_pred EccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216 112 DFTDASTVYDNV-KQATAFGMRSV-VY 136 (163)
Q Consensus 112 DfT~p~~~~~~~-~~al~~G~~vV-ig 136 (163)
-+|+. .. +.+ ...++.|.++. +|
T Consensus 200 taT~s-~~-p~i~~~~l~~g~~i~~vg 224 (326)
T TIGR02992 200 TTTPS-ET-PILHAEWLEPGQHVTAMG 224 (326)
T ss_pred EecCC-CC-cEecHHHcCCCcEEEeeC
Confidence 66633 22 222 24567888876 44
No 231
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.33 E-value=0.036 Score=45.16 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=51.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVID 112 (163)
|++++|.| +|+||..+++++. ..+.|++-...+.+.. ..+.+ ..+..+. .+.+++.+ ..|||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~------~l~~~i~~~~~~dA~~------~aDVVv- 65 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAA------ALGPLITGGSNEDAAA------LADVVV- 65 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHH------hhccccccCChHHHHh------cCCEEE-
Confidence 68899999 6999999999987 5678887543432210 11111 1222222 45555553 799998
Q ss_pred ccCchhHHHHHHHHHH--c-CCcEEE
Q 031216 113 FTDASTVYDNVKQATA--F-GMRSVV 135 (163)
Q Consensus 113 fT~p~~~~~~~~~al~--~-G~~vVi 135 (163)
.+.|-....-+...++ . ||-||-
T Consensus 66 LAVP~~a~~~v~~~l~~~~~~KIvID 91 (211)
T COG2085 66 LAVPFEAIPDVLAELRDALGGKIVID 91 (211)
T ss_pred EeccHHHHHhHHHHHHHHhCCeEEEe
Confidence 7777666443333333 2 565553
No 232
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.33 E-value=0.081 Score=46.11 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.+.||+|+|++|.||+.+++.+.. .+.++. ++|++. .+++++++. ++|+||.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~-~~d~~~-------------------~~~~~~~~~------~aDlVila 149 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVR-ILEQDD-------------------WDRAEDILA------DAGMVIVS 149 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH-CCCeEE-EeCCCc-------------------chhHHHHHh------cCCEEEEe
Confidence 447899999779999999999875 567755 344321 124555553 78888855
Q ss_pred cCchhHHHHHHHHHHcCC-cEEEeCCCCCHHHHHHHHHH
Q 031216 114 TDASTVYDNVKQATAFGM-RSVVYVPHIQLETVSALSAF 151 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~-~vVigttg~~~e~~~~L~~~ 151 (163)
+++....+.+......+. .+|+-.+.....-...+.+.
T Consensus 150 vP~~~~~~~~~~l~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 150 VPIHLTEEVIARLPPLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred CcHHHHHHHHHHHhCCCCCcEEEECCCccHHHHHHHHHh
Confidence 544444555544333222 23343333333344444443
No 233
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.30 E-value=0.037 Score=47.96 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=58.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||.|+| +|..|..+++.+. ..|+.=..++|.+. .++ +++ .+..+.....+..+
T Consensus 28 ~~~VlivG-~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 28 DAKVAVIG-AGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred CCeEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 46899999 5999999999987 67887788888431 011 110 00000001112111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt 137 (163)
++..+++ .++|+|||++..-.. .-.-..|.+.++|+|.|-
T Consensus 106 ~i~~~~~~~~~------~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 106 RLTWSNALDEL------RDADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred ecCHHHHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1223455 389999999854333 445578899999999754
No 234
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.29 E-value=0.034 Score=48.79 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=59.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g-------~~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||.|+| +|..|..++..+. ..|+.=..++|.+. .+ .+++ .+..+.....+..+
T Consensus 42 ~~~VlviG-~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 42 NARVLVIG-AGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred cCCEEEEC-CCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 46899999 5999999999987 57887777888421 01 1111 00111001112111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigtt 138 (163)
++.++++ .++|+|||++. +..-...-..|.+.|+|+|.|..
T Consensus 120 ~i~~~~~~~~~------~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 120 RLDPSNAVELF------SQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred cCChhHHHHHH------hcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1223455 38999999984 44334566888999999997654
No 235
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.27 E-value=0.036 Score=46.30 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=54.5
Q ss_pred EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCC----CCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----PLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 39 ~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~----~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.|+|++|.+|+.+++.+.+.....=+-++|+.........+..... ..++.-.++++++++ .+|+||...
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~------g~d~V~H~A 74 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE------GVDVVFHTA 74 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc------CCceEEEeC
Confidence 4899999999999999998765333345664321111011111000 112222356666774 899999874
Q ss_pred Cc-----------------hhHHHHHHHHHHcCCcEEEeCC
Q 031216 115 DA-----------------STVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 115 ~p-----------------~~~~~~~~~al~~G~~vVigtt 138 (163)
.| ..+...+++|.++|+.-+|-|.
T Consensus 75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 21 1234456788888988776554
No 236
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.27 E-value=0.033 Score=47.88 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=42.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| +|+||+.+++.+. .-++++.+ +|+.... . .. ......++++++. ..|+|+...
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~-~d~~~~~-~-~~--------~~~~~~~l~ell~------~aDiVil~l 206 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYA-GFGATITA-YDAYPNK-D-LD--------FLTYKDSVKEAIK------DADIISLHV 206 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-EeCChhH-h-hh--------hhhccCCHHHHHh------cCCEEEEeC
Confidence 35899999 6999999999987 56899885 5643210 0 00 1123468999985 899988554
No 237
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.24 E-value=0.041 Score=45.12 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=58.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g-------~~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||+|+| +|.+|..+++.+. ..|+.=.-++|.+. .+ .+++ .+..+.....+..+
T Consensus 11 ~~~VlVvG-~GGvGs~va~~La-r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 11 NAHVAVVG-LGGVGSWAAEALA-RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred CCCEEEEC-CCHHHHHHHHHHH-HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 46899999 6999999999997 45775555777421 00 0110 00000001111111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEe
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVig 136 (163)
+++++++. .++|+|||+.. ++.-......|.++++++|..
T Consensus 89 ~i~~~~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 89 FLTPDNSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred ecCHhHHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 24455654 47999999874 444467778999999999953
No 238
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.24 E-value=0.034 Score=46.38 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=25.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+.||+|+| .|.||..+++.+.. .+.++. ++|+
T Consensus 4 ~~~V~vIG-~G~mG~~iA~~l~~-~G~~V~-~~d~ 35 (295)
T PLN02545 4 IKKVGVVG-AGQMGSGIAQLAAA-AGMDVW-LLDS 35 (295)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHh-cCCeEE-EEeC
Confidence 35799999 59999999999874 578877 5674
No 239
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.22 E-value=0.086 Score=42.47 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=29.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+.||.|+|++|.+|+.+++.+.+ .+.++.++..+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEecC
Confidence 57999999999999999999875 58898877653
No 240
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.21 E-value=0.032 Score=48.30 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=43.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| +|.||+.+++.+. ..|+++.+..++ ....+... ..+..+ .++++++. ..|+|+...
T Consensus 16 gKtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~-~~s~~~A~------~~G~~v-~sl~Eaak------~ADVV~llL 79 (335)
T PRK13403 16 GKTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRP-GKSFEVAK------ADGFEV-MSVSEAVR------TAQVVQMLL 79 (335)
T ss_pred cCEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECc-chhhHHHH------HcCCEE-CCHHHHHh------cCCEEEEeC
Confidence 36799999 8999999999987 579999865443 21111111 223433 48999885 899988444
No 241
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=96.19 E-value=0.033 Score=48.46 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=76.2
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhccCC------
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------ 83 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~---------------------~~~eLvgvid~--~~~g~~~~~l~g~~------ 83 (163)
..|+||+++| .|+-.+.+++-+... .++|+++..|. +..|.|+.+..-..
T Consensus 3 ~~~vrv~iiG-~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 3 TTMVRVAIIG-VGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred cceEEEEEEe-ccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence 4689999999 699988888776533 36799999983 35676655543110
Q ss_pred -----CCCCccee---------CCHHHHHhc---ccccCCccE-----------EEEccC---chhHHHHHHHHHHcCCc
Q 031216 84 -----QPLEIPVM---------SDLTMVLGS---ISQSKARAV-----------VIDFTD---ASTVYDNVKQATAFGMR 132 (163)
Q Consensus 84 -----~~~gi~v~---------~~l~ell~~---~~~~~~~DV-----------VIDfT~---p~~~~~~~~~al~~G~~ 132 (163)
...|+.+- ..+++.++. ..+....|+ ++.+.+ .+...-|+.++++.|++
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence 01111110 112222220 001123333 222221 23446788999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 133 SVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 133 vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
.|-.+|.+-.. .+.+.+++++.++...|.
T Consensus 162 fvN~~P~~iA~-dP~~~~~fee~g~pi~GD 190 (362)
T COG1260 162 FVNAIPVFIAS-DPAWVELFEEKGLPIAGD 190 (362)
T ss_pred eecccCccccC-CHHHHHHHHHcCCceecc
Confidence 99999855332 255889999998887763
No 242
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.18 E-value=0.016 Score=46.59 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLv 64 (163)
+||+|+|++|+||+.+++.+. ..|+++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence 589999999999999999886 5688864
No 243
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.18 E-value=0.071 Score=42.44 Aligned_cols=96 Identities=15% Similarity=0.259 Sum_probs=58.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc---------chh---------hhccCCCCCCccee
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE---------DIG---------MVCDMEQPLEIPVM 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~---------~~~---------~l~g~~~~~gi~v~ 91 (163)
..||.|+| +|.+|.++++.+. ..|+.=..++|.+.. ++ +++ .+..+.....+..+
T Consensus 19 ~s~VlviG-~gglGsevak~L~-~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 19 SAKVLIIG-AGALGAEIAKNLV-LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999 5999999999997 678887778884311 10 000 00000001111111
Q ss_pred --------CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 --------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 --------~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
++.++.+ .++|+|||++.+... ...-+.|.++++|+|.+.+
T Consensus 97 ~~~~~~~~~~~~~~~------~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 97 EEDSLSNDSNIEEYL------QKFTLVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred ecccccchhhHHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1223344 378999988765444 4556888899999887655
No 244
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.17 E-value=0.052 Score=47.21 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=57.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhc-cCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~l~-g~~~~~gi~v~-- 91 (163)
..||+|+| +|..|..+++.+. ..|+.=.-++|.+. .|+. +.+.+ .+.....+..+
T Consensus 135 ~~~VlvvG-~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 135 EARVLLIG-AGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred cCcEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 46899999 5999999999987 56776666788531 1111 00000 00001111111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigt 137 (163)
.++++++. ++|+|||++..... ...-..|.+.++|+|.+.
T Consensus 213 ~~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 213 RVTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred cCChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 12344553 89999999854333 455678999999998664
No 245
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.16 E-value=0.046 Score=48.50 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=52.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhccCCCCCCccee--CCHHHHHhcccccCCccEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~--~~-~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVV 110 (163)
.||+|+| .|+.|+.+++.+. ..|.++.+ .|...... +. ..+. +.|+.++ .+..+.+. ++|+|
T Consensus 15 ~~i~v~G-~G~sG~a~a~~L~-~~G~~V~~-~D~~~~~~~~~~~~~l~----~~gi~~~~~~~~~~~~~------~~dlV 81 (458)
T PRK01710 15 KKVAVVG-IGVSNIPLIKFLV-KLGAKVTA-FDKKSEEELGEVSNELK----ELGVKLVLGENYLDKLD------GFDVI 81 (458)
T ss_pred CeEEEEc-ccHHHHHHHHHHH-HCCCEEEE-ECCCCCccchHHHHHHH----hCCCEEEeCCCChHHhc------cCCEE
Confidence 5899999 6999999998876 66788664 77432111 00 1121 3455553 22333343 78988
Q ss_pred EEccCch--hHHHHHHHHHHcCCcEEE
Q 031216 111 IDFTDAS--TVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 111 IDfT~p~--~~~~~~~~al~~G~~vVi 135 (163)
| .| |. ...+.+..|.+.|++++.
T Consensus 82 V-~S-pgi~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 82 F-KT-PSMRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred E-EC-CCCCCCchHHHHHHHcCCcEEe
Confidence 7 55 32 224678888899999864
No 246
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.015 Score=48.46 Aligned_cols=101 Identities=11% Similarity=0.177 Sum_probs=56.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh----hc--cCC----C-------CCCcceeCCHHHH
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM----VC--DME----Q-------PLEIPVMSDLTMV 97 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~----l~--g~~----~-------~~gi~v~~~l~el 97 (163)
-||+|+| .|.||..++..+. ..+.++. ++|+.... +.+.+ +. +.. . ..++..+++++++
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFA-VSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHH-hCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 4799999 5999999999887 4578877 46743110 00000 00 000 0 0124456788887
Q ss_pred HhcccccCCccEEEEccCchhH--H-H---HHHHHHHcCCcEEEeCCCCCHHHHH
Q 031216 98 LGSISQSKARAVVIDFTDASTV--Y-D---NVKQATAFGMRSVVYVPHIQLETVS 146 (163)
Q Consensus 98 l~~~~~~~~~DVVIDfT~p~~~--~-~---~~~~al~~G~~vVigttg~~~e~~~ 146 (163)
+. ++|+||.+. |+.. . . .+...+..+.-+++-++.++..+..
T Consensus 79 ~~------~aD~Vi~av-pe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~ 126 (288)
T PRK09260 79 VA------DADLVIEAV-PEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIA 126 (288)
T ss_pred hc------CCCEEEEec-cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 74 899999654 4332 1 1 2233334444444556677776543
No 247
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.13 E-value=0.07 Score=44.84 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=54.1
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE-
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV- 109 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV- 109 (163)
++.++.++.|.|||+++|+++++.+. ..+..|+-+..+.. ++.++. .++++... .++++
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~~---kL~~la-----------~~l~~~~~-----v~v~vi 61 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRED---KLEALA-----------KELEDKTG-----VEVEVI 61 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcHH---HHHHHH-----------HHHHHhhC-----ceEEEE
Confidence 34566789999999999999999987 57888886655421 111111 12222110 13332
Q ss_pred EEEccCchhHHHHHHHHHHc--CCcEEEeCC
Q 031216 110 VIDFTDASTVYDNVKQATAF--GMRSVVYVP 138 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~--G~~vVigtt 138 (163)
-+|.|.|+..........+. .+.++|=.-
T Consensus 62 ~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 62 PADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred ECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 45677777776666655555 577775443
No 248
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.12 E-value=0.055 Score=47.31 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=58.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCc-------chh---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGE-------DIG---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~-------~~~---------~l~g~~~~~gi~v~-- 91 (163)
..||.|+| .|.+|..++..+. ..|+.=+.++|.+. .++ +++ .+..+.....+..+
T Consensus 41 ~~~VliiG-~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIG-AGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEEC-CCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 46899999 5999999999987 56776666788431 111 110 00001001122222
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.+.++++. ++|+|||++..-.. .-.-..|.+.++|+|.+..
T Consensus 119 ~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 23445553 89999999855444 4455788999999996654
No 249
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.10 E-value=0.076 Score=43.79 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=52.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC---CC--CCcceeCCHHHHHhcccccCCccEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---QP--LEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~---~~--~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
+||+|+| .|.||..++..+.+ .+.++..+..+...-+.+.+ .|.. .. ..+...++++++ .++|+|
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-------~~~d~v 70 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-------GPQDLV 70 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHH-cCCcccCCceeecccCCCChhHc-------CCCCEE
Confidence 4899999 59999999999874 56776644332211000100 0110 00 011223455543 389999
Q ss_pred EEccCchhHHHHHHHH---HHcCCcEEEeCCCCC
Q 031216 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ 141 (163)
Q Consensus 111 IDfT~p~~~~~~~~~a---l~~G~~vVigttg~~ 141 (163)
|.++.+....+.+... +..+..+|+-..|+.
T Consensus 71 ila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 71 ILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred EEecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 9676555444444333 334456766555775
No 250
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.10 E-value=0.048 Score=49.36 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=55.4
Q ss_pred ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA 106 (163)
Q Consensus 27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~ 106 (163)
++++..-.-.+|+|+| .|++|+.+++.+. .-+++++ ++++... ...+.. ..|.. +.++++++. .
T Consensus 246 R~~~~~LaGKtVgVIG-~G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~--~a~~A~----~~G~~-~~~leell~------~ 309 (476)
T PTZ00075 246 RATDVMIAGKTVVVCG-YGDVGKGCAQALR-GFGARVV-VTEIDPI--CALQAA----MEGYQ-VVTLEDVVE------T 309 (476)
T ss_pred HhcCCCcCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch--hHHHHH----hcCce-eccHHHHHh------c
Confidence 3445455567999999 7999999999987 4678855 4654321 110100 12333 247888875 8
Q ss_pred ccEEEEccCc-hhHHHHHHHHHHcCCcEEE
Q 031216 107 RAVVIDFTDA-STVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 107 ~DVVIDfT~p-~~~~~~~~~al~~G~~vVi 135 (163)
.|+||..+-. ..........++.|.-++.
T Consensus 310 ADIVI~atGt~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 310 ADIFVTATGNKDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred CCEEEECCCcccccCHHHHhccCCCcEEEE
Confidence 9999987633 2222344444555554443
No 251
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.08 E-value=0.047 Score=47.58 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=29.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
.++||.|+|++|.+|+.+++.+.+ .+.+++++..+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVR-RGYNVVAVARE 93 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEec
Confidence 357999999999999999999875 58898876653
No 252
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=96.05 E-value=0.059 Score=48.31 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=58.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH---HHhcccccCCccE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e---ll~~~~~~~~~DV 109 (163)
.-|+.|+| .|..|+.+++.+.+++ +.+++|.+|.+..+ ..+++++.+.++ ... ..++|-
T Consensus 143 ~rrVLIvG-aG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----------g~~VpvlG~~~dL~~~v~----~~~Ide 206 (463)
T PRK10124 143 KRMVAVAG-DLPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----------GVSNDWAGNLQQLVEDAK----AGKIHN 206 (463)
T ss_pred CCcEEEEE-CCHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----------cCCCCcCCCHHHHHHHHH----hCCCCE
Confidence 35799999 5999999999998776 68999999954211 123445656554 444 368998
Q ss_pred EEEccCc----hhHHHHHHHHHHcCCcEEE
Q 031216 110 VIDFTDA----STVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 110 VIDfT~p----~~~~~~~~~al~~G~~vVi 135 (163)
|+- +.| +...+.+..|.+.|+++.+
T Consensus 207 ViI-Aip~~~~~~l~ell~~~~~~~v~V~i 235 (463)
T PRK10124 207 VYI-AMSMCDGARVKKLVRQLADTTCSVLL 235 (463)
T ss_pred EEE-eCCCcchHHHHHHHHHHHHcCCeEEE
Confidence 774 433 2335667788899998776
No 253
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=96.05 E-value=0.11 Score=39.74 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=53.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc-EEEEccC
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD 115 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D-VVIDfT~ 115 (163)
++.|+| .|..|+.+++.+.+ .+++++|.+|.... ..++. -.++|++.+++++... ..+.+ +++....
T Consensus 1 ~~~I~G-ag~~g~~~~~~l~~-~g~~vvgfid~~~~--~~~~~-----i~g~pvlg~~~~l~~~---~~~~~~~iiai~~ 68 (201)
T TIGR03570 1 KLVIIG-AGGHGRVVADIAED-SGWEIVGFLDDNPA--LQGTS-----VDGLPVLGGDEDLLRY---PPDEVDLVVAIGD 68 (201)
T ss_pred CEEEEc-CCHHHHHHHHHHHh-CCCEEEEEEcCCcc--ccCcc-----cCCccEECCHHHHhhh---cccccEEEEEcCC
Confidence 589999 49999999999874 69999999996421 01111 2467788777665431 02334 4443334
Q ss_pred chhHHHHHHHHHHcCCcE
Q 031216 116 ASTVYDNVKQATAFGMRS 133 (163)
Q Consensus 116 p~~~~~~~~~al~~G~~v 133 (163)
+....+....+.+.+..+
T Consensus 69 ~~~~~~i~~~l~~~g~~~ 86 (201)
T TIGR03570 69 NKLRRRLFEKLKAKGYRF 86 (201)
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 444456666666666544
No 254
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.04 E-value=0.11 Score=43.97 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC--C---------CCCcceeCCHHHHHhccc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--Q---------PLEIPVMSDLTMVLGSIS 102 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~--~---------~~gi~v~~~l~ell~~~~ 102 (163)
+|+||+|+| .|.||..++..+.+ .+.++.. ++++..-+.+.+ .+.. . ...+...++. +.+
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~-~G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 71 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAA-AGADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AAL---- 71 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHh-cCCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccCh-hhc----
Confidence 368999999 59999999999875 4778775 454211000000 0100 0 0012233454 333
Q ss_pred ccCCccEEEEccCchhHHHHHHH---HHHcCCcEEEeCCCCCHHHHHHHHHHhh
Q 031216 103 QSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCD 153 (163)
Q Consensus 103 ~~~~~DVVIDfT~p~~~~~~~~~---al~~G~~vVigttg~~~e~~~~L~~~A~ 153 (163)
.++|+||.++.+....+.+.. .+..+..++.-+.|++.. +.|.+...
T Consensus 72 --~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--~~l~~~~~ 121 (341)
T PRK08229 72 --ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--DVLRAALP 121 (341)
T ss_pred --cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--HHHHHhCC
Confidence 489999976655444443333 333445455545577532 33544433
No 255
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.02 E-value=0.058 Score=46.04 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=42.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| +|.||+.+++.+. .=|+++.+ +|+... ....+. . ..-+.++++++. ..|+|+...
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~~~~~--~~~~~~----~--~~~~~~l~e~l~------~aDvvv~~l 198 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQ-TWGFPLRC-WSRSRK--SWPGVQ----S--FAGREELSAFLS------QTRVLINLL 198 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCCC--CCCCce----e--ecccccHHHHHh------cCCEEEECC
Confidence 36899999 7999999999987 46899885 554321 100000 0 111368899985 899988543
No 256
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.056 Score=46.51 Aligned_cols=92 Identities=22% Similarity=0.301 Sum_probs=57.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC---CCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM---EQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~---~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
++|.|.|+.|++|+-.+..+.+ .|.+++ ++|+-..|.... +... ....++.=..-+++++++ .++|+||.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~~-v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKIA-LLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHHH-hhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence 5799999999999999999885 899988 678533332211 1100 000111101235667764 89999999
Q ss_pred cc----Cch--------------hHHHHHHHHHHcCCcEE
Q 031216 113 FT----DAS--------------TVYDNVKQATAFGMRSV 134 (163)
Q Consensus 113 fT----~p~--------------~~~~~~~~al~~G~~vV 134 (163)
|. .++ .....++.+.++|+.-+
T Consensus 74 FAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~ 113 (329)
T COG1087 74 FAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKF 113 (329)
T ss_pred CccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEE
Confidence 96 222 23455677788886544
No 257
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.029 Score=51.63 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=61.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCH--HHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL--TMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l--~ell~~~~~~~~~DVVID 112 (163)
..|+.|+|| |.-|..+++.+...+....||.+|.+. .+.|.. =.|++|+... +++.+ +...|-++.
T Consensus 116 ~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~~-i~Gv~V~g~~~i~~~v~----~~~~~~iii 183 (588)
T COG1086 116 RIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGMK-IRGVPVLGRIEIERVVE----ELGIQLILI 183 (588)
T ss_pred CCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCCE-EeceeeechhHHHHHHH----HcCCceEEE
Confidence 489999996 999999999999999999999999542 112211 2367787544 44554 367775443
Q ss_pred cc---CchhHHHHHHHHHHcCCcEEE
Q 031216 113 FT---DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT---~p~~~~~~~~~al~~G~~vVi 135 (163)
+- .++...+.++.+-+.|+++=+
T Consensus 184 Aips~~~~~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 184 AIPSASQEERRRILLRLARTGIAVRI 209 (588)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 32 344456777888888877654
No 258
>PRK06091 membrane protein FdrA; Validated
Probab=95.97 E-value=0.042 Score=50.50 Aligned_cols=72 Identities=8% Similarity=0.115 Sum_probs=60.7
Q ss_pred CcceeCCHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 87 gi~v~~~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.++.+.++.++...+ +++|+++.+.++..+.+.++.|++.|+++++=+.|+..++..+|.++|++.++..-|
T Consensus 101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmG 172 (555)
T PRK06091 101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLVMG 172 (555)
T ss_pred CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 466788999888642 467998877777778899999999999999988899888889999999999987655
No 259
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.033 Score=46.44 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=25.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
.||+|+| .|.||..++..+. ..+.+++ ++|+
T Consensus 4 ~~I~ViG-aG~mG~~iA~~la-~~G~~V~-l~d~ 34 (291)
T PRK06035 4 KVIGVVG-SGVMGQGIAQVFA-RTGYDVT-IVDV 34 (291)
T ss_pred cEEEEEC-ccHHHHHHHHHHH-hcCCeEE-EEeC
Confidence 5799999 5999999999887 4588866 4674
No 260
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.96 E-value=0.049 Score=48.43 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=58.8
Q ss_pred eeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhccccc
Q 031216 25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 25 ~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~ 104 (163)
|.+.++....--+|+|+| +|.+|+.+++.+. .-|++++. +|.... +..... ..|..++ ++++++.
T Consensus 192 i~r~t~~~l~GktVvViG-~G~IG~~va~~ak-~~Ga~ViV-~d~d~~--R~~~A~----~~G~~~~-~~~e~v~----- 256 (413)
T cd00401 192 IKRATDVMIAGKVAVVAG-YGDVGKGCAQSLR-GQGARVIV-TEVDPI--CALQAA----MEGYEVM-TMEEAVK----- 256 (413)
T ss_pred HHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EECChh--hHHHHH----hcCCEEc-cHHHHHc-----
Confidence 344556544557899999 6999999999876 55778654 674321 111111 2343332 4566663
Q ss_pred CCccEEEEccCchhHH-HHHHHHHHcCCcEE-Ee
Q 031216 105 KARAVVIDFTDASTVY-DNVKQATAFGMRSV-VY 136 (163)
Q Consensus 105 ~~~DVVIDfT~p~~~~-~~~~~al~~G~~vV-ig 136 (163)
..|+||++|-..... .-...+++.|.-++ +|
T Consensus 257 -~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 -EGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -CCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 789999988544443 33356677776654 44
No 261
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=95.95 E-value=0.062 Score=44.06 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=23.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~ 69 (163)
|.|+|++|.+|+.+++.+.+. +. ++++ +++
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence 579999999999999999865 55 5654 453
No 262
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.94 E-value=0.025 Score=47.63 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
|.||.|+|++|.+|+.+++.+.+ .+.+++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~ 34 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK 34 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence 56899999999999999999985 56666666664
No 263
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.93 E-value=0.037 Score=46.44 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+-+|.++.+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus 3 ~~~~~~~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~r 41 (338)
T PLN00198 3 TLTPTGKKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTVR 41 (338)
T ss_pred cccCCCCCeEEEECCchHHHHHHHHHHHH-CCCEEEEEEC
Confidence 45666778999999999999999999985 5788876554
No 264
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.92 E-value=0.042 Score=45.17 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=27.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
++|.|+|++|.+|+.+++.+.+ .+.++.++..+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLE-QGEEVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHH-CCCEEEEEEec
Confidence 3799999999999999999885 47888766543
No 265
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.91 E-value=0.088 Score=44.62 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=58.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhccCCCCCCcceeC-
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVMS- 92 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~---------~l~g~~~~~gi~v~~- 92 (163)
..||.|+| .|.+|.++++.+. ..|+.=+.++|.+.. + .|++ .+..+.....+.+++
T Consensus 19 ~s~VLIvG-~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 19 KSNVLISG-LGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred cCcEEEEc-CCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 36899999 5999999999997 789988889995321 0 0110 011110011222222
Q ss_pred CH-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 93 DL-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 93 ~l-~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.+ ++.+ .++|+||+...+... ...-+.|.++++++|.+-+
T Consensus 97 ~~~~~~l------~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~ 138 (286)
T cd01491 97 PLTTDEL------LKFQVVVLTDASLEDQLKINEFCHSPGIKFISADT 138 (286)
T ss_pred cCCHHHH------hcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 22 3344 378888877654433 4555788888999886554
No 266
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.11 Score=46.67 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---ccCCC-----------CC-CcceeCC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDMEQ-----------PL-EIPVMSD 93 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l---~g~~~-----------~~-gi~v~~~ 93 (163)
+..||+|-| .|++|+..++.+. ..|.+|+++.|+. +.|.|..++ ..... .+ +.... +
T Consensus 227 ~g~~vaIQG-fGnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~ 303 (445)
T PRK14030 227 KGKTVAISG-FGNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A 303 (445)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence 347999999 7999999999986 5799999998842 456665442 11100 11 22222 4
Q ss_pred HHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHHHHHhhhcCeEEcC
Q 031216 94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 94 l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt-g-~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.++++. .++||++=+...... .+++....+.+..+|+|-. + .+++..+.| ++.+|++.+
T Consensus 304 ~~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL----~~rGI~~vP 365 (445)
T PRK14030 304 GKKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF----IAAKQLFAP 365 (445)
T ss_pred Ccccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH----HHCCCEEeC
Confidence 466665 589999966654444 6788888888999999887 2 344443333 455777643
No 267
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.90 E-value=0.084 Score=46.91 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhccCC-------CCCCcceeCCHHHHHhcc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI 101 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~g~~-------~~~gi~v~~~l~ell~~~ 101 (163)
+..||+|-| +|+.|+..++.+.+. |.+|+++.|+. ..|-|...+.... ...+.... +-++++.
T Consensus 206 ~G~rVaVQG-~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~-- 280 (411)
T COG0334 206 EGARVAVQG-FGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE-- 280 (411)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc--
Confidence 558999999 799999999999755 99999999853 3455544443211 01122222 3367776
Q ss_pred cccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHHhhhcCeEEcC
Q 031216 102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
.++|+++=+...+.. .+++.....+ +|.|-. .++++..+.+. +.||++.+
T Consensus 281 ---~~cDIl~PcA~~n~I~~~na~~l~ak---~V~EgAN~P~t~eA~~i~~----erGIl~~P 333 (411)
T COG0334 281 ---VDCDILIPCALENVITEDNADQLKAK---IVVEGANGPTTPEADEILL----ERGILVVP 333 (411)
T ss_pred ---ccCcEEcccccccccchhhHHHhhhc---EEEeccCCCCCHHHHHHHH----HCCCEEcC
Confidence 589998855544443 3444443333 777665 35555434333 77888754
No 268
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.90 E-value=0.056 Score=49.20 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=44.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|+|+| .|+||+.+++.+. .-++++.+ +|+... .+... ..++..++++++++. .+|+|+...
T Consensus 138 gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvV~l~l 201 (525)
T TIGR01327 138 GKTLGVIG-LGRIGSIVAKRAK-AFGMKVLA-YDPYIS-PERAE------QLGVELVDDLDELLA------RADFITVHT 201 (525)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHHH------hcCCEEcCCHHHHHh------hCCEEEEcc
Confidence 36899999 7999999999987 45888875 564311 11111 234444578999985 899988554
No 269
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.90 E-value=0.081 Score=46.77 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..|+.|+| .|..|+.+++.+.+++ +++++|.+|.+... .+. ..+++++.+.+++.+ ..++.++|.|+.
T Consensus 128 ~~rvLIiG-ag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------~~gvpVlg~~~dl~~-~i~~~~vd~ViI 197 (451)
T TIGR03023 128 LRRVLIVG-AGELGRRLAERLARNPELGYRVVGFFDDRPDA--RTG------VRGVPVLGKLDDLEE-LIREGEVDEVYI 197 (451)
T ss_pred CCcEEEEe-CCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc--ccc------cCCCCccCCHHHHHH-HHHhcCCCEEEE
Confidence 36799999 5999999999998755 58999999953211 111 246777766554322 112378998874
Q ss_pred ccCc---hhHHHHHHHHHHcCCcEEE
Q 031216 113 FTDA---STVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT~p---~~~~~~~~~al~~G~~vVi 135 (163)
..+. +...+.+..|.+.|+++.+
T Consensus 198 A~p~~~~~~~~~ll~~~~~~gv~V~v 223 (451)
T TIGR03023 198 ALPLAAEDRILELLDALEDLTVDVRL 223 (451)
T ss_pred eeCcccHHHHHHHHHHHHhcCCEEEE
Confidence 4422 2345677888899998776
No 270
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=95.89 E-value=0.077 Score=46.82 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=61.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..|+.|+| .|..|..+++.+.+++ +.+++|.+|.+... ... -.++|++.+.+++.+ +.++.++|.|+-
T Consensus 125 ~~rvLIvG-ag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------i~g~pVlg~~~~l~~-~i~~~~id~ViI 194 (445)
T TIGR03025 125 LRRVLIVG-TGEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVE------VAGLPVLGKLDDLVE-LVRAHRVDEVII 194 (445)
T ss_pred CCcEEEEE-CCHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccc------cCCCcccCCHHHHHH-HHHhCCCCEEEE
Confidence 35799999 5999999999998765 68999999853211 111 246777766655332 112368998774
Q ss_pred ccCch----hHHHHHHHHHHcCCcEEE
Q 031216 113 FTDAS----TVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT~p~----~~~~~~~~al~~G~~vVi 135 (163)
. .|. ...+.+..|.+.|+++.+
T Consensus 195 a-~p~~~~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 195 A-LPLSEEARILELLLQLRDLGVDVRL 220 (445)
T ss_pred e-cCcccHHHHHHHHHHHHhcCCEEEE
Confidence 4 333 234678889999998876
No 271
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.085 Score=46.28 Aligned_cols=85 Identities=20% Similarity=0.163 Sum_probs=51.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhccCCCCCCccee--CCHHHHHhcccccCCccE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV 109 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~----~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DV 109 (163)
.+|.|+|+ |++|..+++.+. ..|.++++ +|+... .+. .++. +.++.++ +..++.. .++|+
T Consensus 6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~~-~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~~d~ 71 (450)
T PRK14106 6 KKVLVVGA-GVSGLALAKFLK-KLGAKVIL-TDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFL------EGVDL 71 (450)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHh------hcCCE
Confidence 68999995 889999999987 67888874 564321 111 2221 2233332 2333433 37999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEE
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vV 134 (163)
||..+......+.+..|.+.|++++
T Consensus 72 vv~~~g~~~~~~~~~~a~~~~i~~~ 96 (450)
T PRK14106 72 VVVSPGVPLDSPPVVQAHKKGIEVI 96 (450)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEE
Confidence 8866543333456667777777765
No 272
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.89 E-value=0.078 Score=45.00 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
+++||.|+|++|.+|+.+++.+.+. +.+++++.
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d 46 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD 46 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence 4689999999999999999999854 78888654
No 273
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.87 E-value=0.17 Score=42.63 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCc
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~ 107 (163)
..++||+|+| .|.||..++..+.+ .+.++.-+..... .|.......+......+.++++.++ . ..+
T Consensus 3 ~~~m~I~IiG-~GaiG~~lA~~L~~-~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~ 73 (313)
T PRK06249 3 SETPRIGIIG-TGAIGGFYGAMLAR-AGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPC 73 (313)
T ss_pred CcCcEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCC
Confidence 3457999999 59999999998875 5677775544221 1111110001000001234445443 2 489
Q ss_pred cEEEEccCchhHH---HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHh
Q 031216 108 AVVIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152 (163)
Q Consensus 108 DVVIDfT~p~~~~---~~~~~al~~G~~vVigttg~~~e~~~~L~~~A 152 (163)
|+||.++...... +.+...+..+..+|.-.-|+.. .+.|.+..
T Consensus 74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~--~e~l~~~~ 119 (313)
T PRK06249 74 DWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV--EEQLREIL 119 (313)
T ss_pred CEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc--HHHHHHHC
Confidence 9998665333333 3333344445455554447753 23444443
No 274
>PLN02214 cinnamoyl-CoA reductase
Probab=95.86 E-value=0.092 Score=44.57 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
++.+|.|+|++|.+|+.+++.+.+ .+.++++...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r 42 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR 42 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence 356899999999999999999874 5889887654
No 275
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.84 E-value=0.099 Score=42.56 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031216 37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~-~~eLvgv 66 (163)
||.|+|++|.+|+.+++.+.+.. +.+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999988654 4788754
No 276
>PRK05086 malate dehydrogenase; Provisional
Probab=95.78 E-value=0.15 Score=43.51 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~ 70 (163)
+||+|+||+|++|+.++..+.. .+....+.++|+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence 5899999999999999988754 3444444566743
No 277
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.78 E-value=0.037 Score=49.22 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI 111 (163)
+..||.|+|| |.||..+++.+. ..++.-+-++.++. .++.+++. ..+ +.-++++.+.+. ++||||
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~-~~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvVi 243 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLA-EKGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVI 243 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHH-hCCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEE
Confidence 3467999995 999999999987 45666666777654 23334432 223 223455556664 899999
Q ss_pred Ecc-Cchh--HHHHHHHHHHcCCc
Q 031216 112 DFT-DAST--VYDNVKQATAFGMR 132 (163)
Q Consensus 112 DfT-~p~~--~~~~~~~al~~G~~ 132 (163)
-.| .|+. ..+.+..+++..++
T Consensus 244 ssTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 244 SSTSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred EecCCCccccCHHHHHHHHhcccC
Confidence 776 3433 35778888888777
No 278
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.18 Score=41.11 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=26.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.+|.|+|++|.+|+.+++.+.+ .|.+++.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~-~G~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-DGWRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence 4799999999999999999874 688887654
No 279
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.78 E-value=0.26 Score=42.21 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH 70 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~ 70 (163)
++.||+|+|+ |.||..++..+. ..++ + +.++|..
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la-~~gl~~-i~LvDi~ 39 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIV-LKNLGD-VVLFDIV 39 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEeCC
Confidence 4468999995 999999988766 4565 7 6688953
No 280
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.075 Score=44.76 Aligned_cols=32 Identities=38% Similarity=0.399 Sum_probs=26.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
+||+|+| .|.||..++..+.+ .|.+++ ++|+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~-~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFAR-AGHEVR-LWDAD 34 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHH-CCCeeE-EEeCC
Confidence 5899999 69999999999875 588877 56753
No 281
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.18 Score=44.41 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhccCCCCCCccee-CC-HHHHHhcccccCCccEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVV 110 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~-l~ell~~~~~~~~~DVV 110 (163)
++.||.|+| .|+.|...++.+....+ .++. +.|....-.....+ . . ++.++ .. -.+.+ .++|.|
T Consensus 6 ~~~~v~viG-~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l---~-~-g~~~~~g~~~~~~~------~~~d~v 72 (438)
T PRK04663 6 GIKNVVVVG-LGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQL---P-E-DVELHSGGWNLEWL------LEADLV 72 (438)
T ss_pred CCceEEEEe-ccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHh---h-c-CCEEEeCCCChHHh------ccCCEE
Confidence 446899999 69999999999987765 7777 47743211111122 1 2 66653 21 12233 278987
Q ss_pred EEccC--chhHHHHHHHHHHcCCcEEE
Q 031216 111 IDFTD--ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 111 IDfT~--p~~~~~~~~~al~~G~~vVi 135 (163)
| .|+ |.. .+.+..|.++|++++.
T Consensus 73 V-~SpgI~~~-~p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 73 V-TNPGIALA-TPEIQQVLAAGIPVVG 97 (438)
T ss_pred E-ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence 7 552 332 4567777888888764
No 282
>PRK14851 hypothetical protein; Provisional
Probab=95.72 E-value=0.084 Score=49.73 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---------C-------CCcc----hh-hhccCCCCCCccee-
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---------S-------VGED----IG-MVCDMEQPLEIPVM- 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---------~-------~g~~----~~-~l~g~~~~~gi~v~- 91 (163)
+..||+|+| .|..|..++..+. ..|+.=.-++|.+ . .|+. +. .+..+.....|..+
T Consensus 42 ~~~~VlIvG-~GGlGs~va~~La-r~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 42 AEAKVAIPG-MGGVGGVHLITMV-RTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred hcCeEEEEC-cCHHHHHHHHHHH-HhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 357899999 5999999999987 4566555577732 0 1111 00 00111111223222
Q ss_pred -----CCHHHHHhcccccCCccEEEEccCchh--H-HHHHHHHHHcCCcEEEeCC
Q 031216 92 -----SDLTMVLGSISQSKARAVVIDFTDAST--V-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 -----~~l~ell~~~~~~~~~DVVIDfT~p~~--~-~~~~~~al~~G~~vVigtt 138 (163)
+++++++. ++|+|||++.... . ......|.+.|+++|.+.+
T Consensus 120 ~~i~~~n~~~~l~------~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~ 168 (679)
T PRK14851 120 AGINADNMDAFLD------GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGP 168 (679)
T ss_pred cCCChHHHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeec
Confidence 24556664 8999999986422 2 3455678999999998763
No 283
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.71 E-value=0.14 Score=42.80 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=59.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhc----------------cCCCCCCcc-----
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC----------------DMEQPLEIP----- 89 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~----------------g~~~~~gi~----- 89 (163)
-+|.|+| .|+.|.-.+++|. ..|+.=.-++|-+ +..+.+-.+. .+.-...+.
T Consensus 31 ~~V~VvG-iGGVGSw~veALa-RsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 31 AHVCVVG-IGGVGSWAVEALA-RSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred CcEEEEe-cCchhHHHHHHHH-HcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 4799999 5999999999987 5677666677721 1111111110 000011111
Q ss_pred ee-CCHHHHHhcccccCCccEEEEccCch-hHHHHHHHHHHcCCcEEE
Q 031216 90 VM-SDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 90 v~-~~l~ell~~~~~~~~~DVVIDfT~p~-~~~~~~~~al~~G~~vVi 135 (163)
++ +++++++. .++|-|||+...= .-.+.+.+|.++++++|.
T Consensus 109 ~t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs 151 (263)
T COG1179 109 ITEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS 151 (263)
T ss_pred hCHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence 22 56677776 5899999998443 346888999999999884
No 284
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.67 E-value=0.15 Score=37.83 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=25.5
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
||.|+| +|.+|..+++.+. ..++.=..++|.
T Consensus 1 ~VliiG-~GglGs~ia~~L~-~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLA-RSGVGKITLIDF 31 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHH-HCCCCEEEEEcC
Confidence 689999 5999999999997 567765567884
No 285
>PRK14852 hypothetical protein; Provisional
Probab=95.67 E-value=0.077 Score=51.79 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=59.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---------C-------CCcc----hh-hhccCCCCCCccee-
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---------S-------VGED----IG-MVCDMEQPLEIPVM- 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---------~-------~g~~----~~-~l~g~~~~~gi~v~- 91 (163)
+..||+|+| .|+.|..++..+. ..|+.=.-++|.+ . .|+. +. .+..+.....|.++
T Consensus 331 ~~srVlVvG-lGGlGs~ia~~LA-raGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 331 LRSRVAIAG-LGGVGGIHLMTLA-RTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred hcCcEEEEC-CcHHHHHHHHHHH-HcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 357899999 5999999999987 4567666677732 0 1111 00 01111111223323
Q ss_pred -----CCHHHHHhcccccCCccEEEEccCc---hhHHHHHHHHHHcCCcEEEeCC
Q 031216 92 -----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 -----~~l~ell~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~~G~~vVigtt 138 (163)
++.++++. ++|+|||++.. +.-......|.+.|+|+|.+..
T Consensus 409 ~~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 409 EGVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred cCCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 34566664 89999998753 2224555678999999997766
No 286
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.64 E-value=0.067 Score=45.88 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-----CCcchhhhccC--CCCCCcceeCCHHHHHhc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-----VGEDIGMVCDM--EQPLEIPVMSDLTMVLGS 100 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~------~~eLvgvid~~~-----~g~~~~~l~g~--~~~~gi~v~~~l~ell~~ 100 (163)
+|+||+|+||+|++|+.++..+...+ +.+|+. +|... .|. ..++... ....++.+..++.+.+.
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~-~~Dl~d~~~~~~~~~~~~~~~~~~l~- 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGV-VMELQDCAFPLLKSVVATTDPEEAFK- 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCccccccce-eeehhhccccccCCceecCCHHHHhC-
Confidence 47899999988999999999887643 236764 56421 121 1122110 00113444567767674
Q ss_pred ccccCCccEEEEcc
Q 031216 101 ISQSKARAVVIDFT 114 (163)
Q Consensus 101 ~~~~~~~DVVIDfT 114 (163)
.+|+||...
T Consensus 78 -----~aDiVI~tA 86 (325)
T cd01336 78 -----DVDVAILVG 86 (325)
T ss_pred -----CCCEEEEeC
Confidence 899988643
No 287
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=95.63 E-value=0.061 Score=46.64 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCC--HHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~--l~ell~~~~~~~~~DVVID 112 (163)
..+|.|+|++|..|...++.+.. -++..+..+.++. ..+..+-+|. ..+.=|++ +.|.+.... ..++|+|+|
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~-~~~~~v~t~~s~e-~~~l~k~lGA---d~vvdy~~~~~~e~~kk~~-~~~~DvVlD 231 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKH-AGAIKVVTACSKE-KLELVKKLGA---DEVVDYKDENVVELIKKYT-GKGVDVVLD 231 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHh-cCCcEEEEEcccc-hHHHHHHcCC---cEeecCCCHHHHHHHHhhc-CCCccEEEE
Confidence 46899999999999999988764 4544444444322 2333333331 12222444 333332100 347999999
Q ss_pred ccCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216 113 FTDASTVYDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vVigttg 139 (163)
|................|...++++.+
T Consensus 232 ~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 232 CVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred CCCCCccccchhhhccCCceEEEEecc
Confidence 976544443344444555444555543
No 288
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.1 Score=47.36 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
..||+|+| .|.||+.++..+. ..|++++ +.|++
T Consensus 7 i~~V~VIG-aG~MG~gIA~~la-~aG~~V~-l~D~~ 39 (507)
T PRK08268 7 IATVAVIG-AGAMGAGIAQVAA-QAGHTVL-LYDAR 39 (507)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 35799999 5999999999887 5699987 57753
No 289
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.61 E-value=0.08 Score=49.03 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=50.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
..+||.|+|++|.+|+.+++.+.. .+.++.....+ +.. ...+...+.. .++|+||.+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v~~~~~~---------l~d---------~~~v~~~i~~----~~pd~Vih~ 435 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEK-QGIAYEYGKGR---------LED---------RSSLLADIRN----VKPTHVFNA 435 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHh-CCCeEEeeccc---------ccc---------HHHHHHHHHh----hCCCEEEEC
Confidence 358999999999999999999874 46776311110 100 0123344442 589999987
Q ss_pred cC----c---------h--------hHHHHHHHHHHcCCcEEEeCC
Q 031216 114 TD----A---------S--------TVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 114 T~----p---------~--------~~~~~~~~al~~G~~vVigtt 138 (163)
.. | . .....+..|.+.|++.|+-.|
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss 481 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFAT 481 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcc
Confidence 52 1 1 123456778888988775433
No 290
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.59 E-value=0.038 Score=46.89 Aligned_cols=89 Identities=7% Similarity=0.009 Sum_probs=59.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCCCCC--cceeCCHHHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~~~g--i~v~~~l~ell~~~~~~~~~DVVI 111 (163)
.-+++|+| +|..|+.+++.+.....++=+-+.+++. .+...+.. +....+ +.+.++++++.. ..|+|+
T Consensus 117 a~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~ 187 (301)
T PRK06407 117 VENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAALR------DADTIT 187 (301)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEE
Confidence 46899999 6999999999999888888888888653 12222211 001123 455789999985 999999
Q ss_pred EccCchhHHHHH-HHHHHcCCcEE
Q 031216 112 DFTDASTVYDNV-KQATAFGMRSV 134 (163)
Q Consensus 112 DfT~p~~~~~~~-~~al~~G~~vV 134 (163)
=+| +... +.+ ...++.|.||.
T Consensus 188 taT-~s~~-P~~~~~~l~pg~hV~ 209 (301)
T PRK06407 188 SIT-NSDT-PIFNRKYLGDEYHVN 209 (301)
T ss_pred Eec-CCCC-cEecHHHcCCCceEE
Confidence 544 3322 222 23456788876
No 291
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.56 E-value=0.049 Score=46.06 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=49.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI 111 (163)
...||+|+| .|++|+.+++.+.. -+.++.. +|++.. +..... ..+... ++++.+.+. ++|+||
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~-~Ga~V~v-~~r~~~--~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKA-LGANVTV-GARKSA--HLARIT----EMGLSPFHLSELAEEVG------KIDIIF 215 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHH-CCCEEEE-EECCHH--HHHHHH----HcCCeeecHHHHHHHhC------CCCEEE
Confidence 457999999 59999999999875 4677664 565421 111111 122221 245666663 899999
Q ss_pred EccCchhHHHHHHHHHHcCCcEE
Q 031216 112 DFTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 112 DfT~p~~~~~~~~~al~~G~~vV 134 (163)
+.+++....+.....++.|--+|
T Consensus 216 ~t~p~~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 216 NTIPALVLTKEVLSKMPPEALII 238 (296)
T ss_pred ECCChhhhhHHHHHcCCCCcEEE
Confidence 76543333333333444554333
No 292
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.15 Score=41.35 Aligned_cols=32 Identities=38% Similarity=0.386 Sum_probs=26.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
|.++.|+|++|.+|+.+++.+. ..+.++++..
T Consensus 1 mk~vlItGasggiG~~la~~l~-~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFK-AAGYEVWATA 32 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHH-HCCCEEEEEe
Confidence 4579999999999999999987 4588888653
No 293
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.51 E-value=0.2 Score=43.48 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=59.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
.||+++| .|++|+.+++++..- +.++..--..+...+...+. +.. +.|+++++. +.|+|+.+..
T Consensus 163 K~vgilG-~G~IG~~ia~rL~~F-g~~i~y~~r~~~~~~~~~~~-------~~~-~~d~~~~~~------~sD~ivv~~p 226 (336)
T KOG0069|consen 163 KTVGILG-LGRIGKAIAKRLKPF-GCVILYHSRTQLPPEEAYEY-------YAE-FVDIEELLA------NSDVIVVNCP 226 (336)
T ss_pred CEEEEec-CcHHHHHHHHhhhhc-cceeeeecccCCchhhHHHh-------ccc-ccCHHHHHh------hCCEEEEecC
Confidence 6899999 699999999999863 45554322222111111111 111 458899885 8999886652
Q ss_pred --chhH-HHHHHHHHHcCCcEEEeCCCC-CHHHHHHHHHHhhhcCeEEc
Q 031216 116 --ASTV-YDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMVST 160 (163)
Q Consensus 116 --p~~~-~~~~~~al~~G~~vVigttg~-~~e~~~~L~~~A~~~~Vv~t 160 (163)
++.. .-+-+.....+..+|+=.++. .--+.+.+.++.++-.+..+
T Consensus 227 Lt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~a 275 (336)
T KOG0069|consen 227 LTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGA 275 (336)
T ss_pred CCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccc
Confidence 3322 233344455555555444532 01122446666555444433
No 294
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.50 E-value=0.16 Score=45.66 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=71.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhc----------c----CCCCCCcceeCCHH
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC----------D----MEQPLEIPVMSDLT 95 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~~~l~----------g----~~~~~gi~v~~~l~ 95 (163)
..||+|.| .|++|...++.+. ..|.+++++.|+. ..|-|..++. + .....+.. +.+.+
T Consensus 228 g~rVaVQG-fGNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~-~i~~d 304 (444)
T PRK14031 228 GKVCLVSG-SGNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK-YVEGA 304 (444)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE-EcCCc
Confidence 47999999 6999999999987 5799999999942 3455543321 0 00011222 22556
Q ss_pred HHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC-C-CCHHHHHHHHHHhhhcCeEEc
Q 031216 96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 96 ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt-g-~~~e~~~~L~~~A~~~~Vv~t 160 (163)
+++. .++|+++=+...... .+++......|+.+|++-- + .+++..+.| .+.+|++.
T Consensus 305 ~~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L----~~rgI~~~ 363 (444)
T PRK14031 305 RPWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVF----QDAKILYA 363 (444)
T ss_pred cccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHH----HHCCcEEe
Confidence 6665 589998855544433 5777777778888888665 2 344443333 33455553
No 295
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.50 E-value=0.049 Score=50.34 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
-.|.|.|++|++|+.+++.+.+ .|.+++++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence 4599999999999999999874 5889887655
No 296
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.18 Score=44.12 Aligned_cols=87 Identities=20% Similarity=0.147 Sum_probs=52.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccch-hhhccCCCCCCccee--CCHHHHHhcccccCCccEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~-~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVI 111 (163)
.+|.|+|+ |++|...++.+. ..|.++++ .|.... .... ..+. ..++.++ .+..+++. ..+|+||
T Consensus 6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~-----~~~d~vV 73 (447)
T PRK02472 6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQELL----EEGIKVICGSHPLELLD-----EDFDLMV 73 (447)
T ss_pred CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHHH----hcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence 47999995 889999988876 67888775 464321 1111 2221 3355544 33444443 2489887
Q ss_pred Ecc-CchhHHHHHHHHHHcCCcEEE
Q 031216 112 DFT-DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 112 DfT-~p~~~~~~~~~al~~G~~vVi 135 (163)
--. .|.. .+.+..|.+.|++++.
T Consensus 74 ~s~gi~~~-~~~~~~a~~~~i~v~~ 97 (447)
T PRK02472 74 KNPGIPYT-NPMVEKALEKGIPIIT 97 (447)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEe
Confidence 432 2332 3567777888888764
No 297
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.48 E-value=0.45 Score=40.55 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
+..||+|+|+ |.||..++..+....-.+ +.++|..
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 4579999996 999999888876543256 6688853
No 298
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.45 E-value=0.17 Score=42.46 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=57.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcch-------h---------hhccCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDI-------G---------MVCDMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-----~~g~~~-------~---------~l~g~~~~~gi~v~-- 91 (163)
..+|+|+| .|.+|..+++.+. ..|+.=+-++|.+ ..++.. + .+..+.....+..+
T Consensus 30 ~s~VlVvG-~GGVGs~vae~La-r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 30 DAHICVVG-IGGVGSWAAEALA-RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred CCCEEEEC-cCHHHHHHHHHHH-HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 46899999 5999999999997 4565555577732 111110 0 00011001112111
Q ss_pred ----CCHHHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEE
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVi 135 (163)
++.++++. .++|+|||+... ..-......|.++++++|.
T Consensus 108 ~i~~e~~~~ll~-----~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~ 151 (268)
T PRK15116 108 FITPDNVAEYMS-----AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVT 151 (268)
T ss_pred ccChhhHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 24455554 479999998744 5556778899999999984
No 299
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.44 E-value=0.13 Score=43.76 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=42.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|||+| +|++|+.+++.+. .=|+++.+ +|+... . . ... -+.++++++. ..|+|+...
T Consensus 147 gktvgIiG-~G~IG~~va~~l~-~fg~~V~~-~~~~~~-~---~-------~~~-~~~~l~ell~------~sDiv~l~~ 205 (314)
T PRK06932 147 GSTLGVFG-KGCLGTEVGRLAQ-ALGMKVLY-AEHKGA-S---V-------CRE-GYTPFEEVLK------QADIVTLHC 205 (314)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCcc-c---c-------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence 47899999 7999999999886 45899876 454211 0 0 011 1468999996 899988655
No 300
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.43 E-value=0.063 Score=44.33 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=28.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
.+|.|.|++|.+|+.+++.+.+ .+.+++++..+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVRD 37 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEcC
Confidence 5899999999999999999985 58898876643
No 301
>PRK07877 hypothetical protein; Provisional
Probab=95.42 E-value=0.096 Score=49.68 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=58.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC-----CC----------Ccc----hh-hhccCCCCCCccee-
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH-----SV----------GED----IG-MVCDMEQPLEIPVM- 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~-----~~----------g~~----~~-~l~g~~~~~gi~v~- 91 (163)
+..||+|+|+ | .|..++..+. ..|+ .=.-++|.+ +. |+. +. .+..+.....|..+
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3478999996 8 9999998887 4564 333366732 11 110 00 00011011222222
Q ss_pred -----CCHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 92 -----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 -----~~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
+++++++. ++|+|||++..-.. ...-..|.++|+|+|+|+.
T Consensus 183 ~~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 183 DGLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred ccCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 35666664 89999999954444 4555889999999999885
No 302
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.40 E-value=0.06 Score=47.34 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=42.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|||+| .|+||+.+++.+. .=|+++.+ +|+... +.. . . ..+.++++++. +.|+|+..+
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~-a~G~~V~~-~dp~~~--~~~-------~-~-~~~~~L~ell~------~sDiI~lh~ 175 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLE-ALGIKTLL-CDPPRA--DRG-------D-E-GDFRSLDELVQ------EADILTFHT 175 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCccc--ccc-------c-c-cccCCHHHHHh------hCCEEEEeC
Confidence 46899999 7999999999987 56899885 564321 000 0 1 12568999985 899988554
No 303
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.39 E-value=0.13 Score=45.32 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=66.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
..++|||+| .|.||+-+++.+.+ .|-.|. ..|+... .++.+ ++|..-|+++.++.+ ..+|+|+-+
T Consensus 51 ~tl~IaIIG-fGnmGqflAetli~-aGh~li-~hsRsdy-ssaa~------~yg~~~ft~lhdlce-----rhpDvvLlc 115 (480)
T KOG2380|consen 51 ATLVIAIIG-FGNMGQFLAETLID-AGHGLI-CHSRSDY-SSAAE------KYGSAKFTLLHDLCE-----RHPDVVLLC 115 (480)
T ss_pred cceEEEEEe-cCcHHHHHHHHHHh-cCceeE-ecCcchh-HHHHH------HhcccccccHHHHHh-----cCCCEEEEE
Confidence 358999999 79999999999985 466554 2444321 22222 566777888888776 599999977
Q ss_pred cCchhHHHHHHH---H-HHcCCcEEEeCCCCCHHHHH-HHHHHhhhcCeEEcC
Q 031216 114 TDASTVYDNVKQ---A-TAFGMRSVVYVPHIQLETVS-ALSAFCDKASMVSTG 161 (163)
Q Consensus 114 T~p~~~~~~~~~---a-l~~G~~vVigttg~~~e~~~-~L~~~A~~~~Vv~tg 161 (163)
|........+.. . ++.|. ++.+.+.--.-+.+ -++.+-+.-.|+-|.
T Consensus 116 tsilsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekYLPkdfDIlctH 167 (480)
T KOG2380|consen 116 TSILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKYLPKDFDILCTH 167 (480)
T ss_pred ehhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHhCccccceEeec
Confidence 654444444432 2 44554 34555533222223 333344555555543
No 304
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.39 E-value=0.3 Score=34.35 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=54.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC-
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD- 115 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~- 115 (163)
+|+|+|+--.+-..+-+.+. .-|.++.-. .++ .|.. + -...++..+ .++|+||-+|.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~-~~~~---------~----~~~~l~~~i------~~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRD-GGDE---------K----KASRLPSKI------KKADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecC-CCCc---------c----chhHHHHhc------CCCCEEEEEeCC
Confidence 58999932377777766665 578887765 321 1110 0 001244555 38899988873
Q ss_pred --chhHHHHHHHHHHcCCcEEEeC-CCCCHHHHHHHHH
Q 031216 116 --ASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSA 150 (163)
Q Consensus 116 --p~~~~~~~~~al~~G~~vVigt-tg~~~e~~~~L~~ 150 (163)
.......-..|.+.++|++.-. ++++ .-.+.|.+
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~-~l~~~l~~ 95 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS-SLERALER 95 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHH-HHHHHHHh
Confidence 3334455578889999999866 4664 23344444
No 305
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.38 E-value=0.25 Score=42.52 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.6
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
..+|.||+|+|+.|++|+.++..+....-..-+.++|.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 35788999999779999999988875544433446775
No 306
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.36 E-value=0.11 Score=47.46 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=52.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.-.+|+|+| .|+||+.+++.+. .-|+++.+ +|+... .+... ..++... ++++++. ..|+|+..
T Consensus 139 ~gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~~------~~g~~~~-~l~ell~------~aDiV~l~ 201 (526)
T PRK13581 139 YGKTLGIIG-LGRIGSEVAKRAK-AFGMKVIA-YDPYIS-PERAA------QLGVELV-SLDELLA------RADFITLH 201 (526)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHHH------hcCCEEE-cHHHHHh------hCCEEEEc
Confidence 347899999 7999999999987 56888875 564221 11111 2344434 8999985 89998855
Q ss_pred cCch-hHH----HHHHHHHHcCCcEEE
Q 031216 114 TDAS-TVY----DNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T~p~-~~~----~~~~~al~~G~~vVi 135 (163)
.+.+ ... .-....++.|.-+|-
T Consensus 202 lP~t~~t~~li~~~~l~~mk~ga~lIN 228 (526)
T PRK13581 202 TPLTPETRGLIGAEELAKMKPGVRIIN 228 (526)
T ss_pred cCCChHhhcCcCHHHHhcCCCCeEEEE
Confidence 4221 111 233444556655544
No 307
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.36 E-value=0.043 Score=47.33 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=54.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhccCCCCCCcceeCCHHH-HHhcccccCCccE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV 109 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLv---gvid~-~~~g~~~~~l~g~~~~~gi~v~~~l~e-ll~~~~~~~~~DV 109 (163)
.++|+| ||+|..|+.+++.+. ..++.+- -+... ...|+. .... ...+.+- ++++ .+ .++|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Le-er~fpv~~l~l~~s~~~s~gk~----i~f~-g~~~~V~-~l~~~~f------~~vDi 68 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALE-QSDLEIEQISIVEIEPFGEEQG----IRFN-NKAVEQI-APEEVEW------ADFNY 68 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHH-hcCCchhheeecccccccCCCE----EEEC-CEEEEEE-ECCccCc------ccCCE
Confidence 368999 999999999999876 4455432 11112 223322 1111 1123332 3333 23 38999
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeC
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigt 137 (163)
++ |+..+...+++..+.++|..||--+
T Consensus 69 a~-fag~~~s~~~ap~a~~aG~~VIDnS 95 (322)
T PRK06901 69 VF-FAGKMAQAEHLAQAAEAGCIVIDLY 95 (322)
T ss_pred EE-EcCHHHHHHHHHHHHHCCCEEEECC
Confidence 88 6555666889999999999887533
No 308
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.35 E-value=0.17 Score=43.45 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=55.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc----hhhhc-cCCCCCCccee-CCH
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED----IGMVC-DMEQPLEIPVM-SDL 94 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~----------------g~~----~~~l~-g~~~~~gi~v~-~~l 94 (163)
||.|+| .|.+|.++++.+. ..|+.=.-++|.+.. |+. +.+.+ .+.....+..+ .++
T Consensus 1 kVlIVG-aGGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI 78 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 699999 5999999999997 678888888994311 111 00000 00001112111 111
Q ss_pred ------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEe
Q 031216 95 ------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVY 136 (163)
Q Consensus 95 ------~ell~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVig 136 (163)
++.+ ..+|+||++..+.... ..-..|.++++++|-+
T Consensus 79 ~~~~~~~~f~------~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 79 KDPDFNVEFF------KQFDLVFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred CCccchHHHH------hcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 2444 3899999887554454 4557889999999863
No 309
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.22 Score=44.50 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCC
Q 031216 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKA 106 (163)
Q Consensus 29 ~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~ 106 (163)
.-|.-++.||.|+| .|+.|+.+++.+. ..+.++. +.|+... +..+++ ...|+.++. ...+-+ .+
T Consensus 9 ~~~~~~~~~v~v~G-~G~sG~a~a~~L~-~~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~------~~ 74 (473)
T PRK00141 9 ALPQELSGRVLVAG-AGVSGRGIAAMLS-ELGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQL------DS 74 (473)
T ss_pred hcccccCCeEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHh------cC
Confidence 34555667899999 6999999999887 5677655 5775321 122221 134666652 223333 37
Q ss_pred ccEEEEcc--CchhHHHHHHHHHHcCCcEEE
Q 031216 107 RAVVIDFT--DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 107 ~DVVIDfT--~p~~~~~~~~~al~~G~~vVi 135 (163)
+|+|| .| .|... +.+..|.+.|++++.
T Consensus 75 ~d~vV-~Spgi~~~~-p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 75 FSLVV-TSPGWRPDS-PLLVDAQSQGLEVIG 103 (473)
T ss_pred CCEEE-eCCCCCCCC-HHHHHHHHCCCceee
Confidence 88877 55 24333 556677788888753
No 310
>PLN02650 dihydroflavonol-4-reductase
Probab=95.33 E-value=0.075 Score=44.87 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=28.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
..+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 45899999999999999999985 5889887654
No 311
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.33 E-value=0.14 Score=45.64 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=68.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chh----hhccCCCCCCcceeCCHHH
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIG----MVCDMEQPLEIPVMSDLTM 96 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~-------~~g~------~~~----~l~g~~~~~gi~v~~~l~e 96 (163)
+..+|+|+| +|++|--++-+.. ..|+.++| +|.+ ..|+ +.. +... ......++|+++
T Consensus 8 ~~~~I~ViG-LGYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~---~g~lraTtd~~~ 81 (436)
T COG0677 8 MSATIGVIG-LGYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVE---SGKLRATTDPEE 81 (436)
T ss_pred CceEEEEEc-cccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHh---cCCceEecChhh
Confidence 348999999 9999998887776 67999997 5621 1121 111 1111 223455677776
Q ss_pred HHhcccccCCccEEEEcc-C-------ch-----hHHHHHHHHHHcCCcEEEeCC---CCCHHHHHHHHHH
Q 031216 97 VLGSISQSKARAVVIDFT-D-------AS-----TVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF 151 (163)
Q Consensus 97 ll~~~~~~~~~DVVIDfT-~-------p~-----~~~~~~~~al~~G~~vVigtt---g~~~e~~~~L~~~ 151 (163)
+ .++|++|.+- + |+ .+.+-+...|+.|-=||++.| |.+++-...|.+.
T Consensus 82 l-------~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 82 L-------KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred c-------ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 5 3899988653 1 21 334556677899999999988 6677666655553
No 312
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.32 E-value=0.16 Score=42.31 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
|||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence 5899999999999999999875 58888875
No 313
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.32 E-value=0.13 Score=45.29 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=42.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|||+| .|+||+.+++.+. .-|+++.+ +|+..... . +..-+.++++++. .+|+|+...
T Consensus 116 gktvGIIG-~G~IG~~va~~l~-a~G~~V~~-~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh~ 175 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLR-GLGWKVLV-CDPPRQEA----------E-GDGDFVSLERILE------ECDVISLHT 175 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCccccc----------c-cCccccCHHHHHh------hCCEEEEeC
Confidence 36899999 7999999999987 56899874 56432100 0 1112468999985 899988544
No 314
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.32 E-value=0.14 Score=42.41 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=51.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCcchhhhccCCCCCCcceeCCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~D 108 (163)
+||+|+| .|.||..++..+.+ .+.++..+ ++.. .|.......+. ........++.+++. .++|
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~-~g~~V~~~-~r~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~------~~~d 70 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLE-AGRDVTFL-VRPKRAKALRERGLVIRSDHGD-AVVPGPVITDPEELT------GPFD 70 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHH-CCCceEEE-ecHHHHHHHHhCCeEEEeCCCe-EEecceeecCHHHcc------CCCC
Confidence 5899999 59999999999875 46676644 3311 01110000000 001112345666554 3899
Q ss_pred EEEEccCchhHHHHHHHH---HHcCCcEEEeCCCCC
Q 031216 109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ 141 (163)
Q Consensus 109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigttg~~ 141 (163)
+||.++.+....+.+... +..+..+|+-..|+.
T Consensus 71 ~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 71 LVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 998666554444444333 334555555445775
No 315
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.31 E-value=0.14 Score=41.31 Aligned_cols=31 Identities=39% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
|.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~ 31 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRS 31 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeCC
Confidence 57999999999999999875 57999886653
No 316
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.31 E-value=0.25 Score=45.79 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc-CCcEEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA 66 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~-~~~eLvgv 66 (163)
+++||.|+|++|.+|+.+++.+.+. ++.+++++
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4579999999999999999999865 47888765
No 317
>PRK06182 short chain dehydrogenase; Validated
Probab=95.26 E-value=0.38 Score=38.88 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus 4 k~vlItGasggiG~~la~~l~~-~G~~V~~~~r 35 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAA-QGYTVYGAAR 35 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence 5799999999999999999874 6888886543
No 318
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.054 Score=47.21 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=70.7
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEE
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
.+..-+.|+||+|..|+.+++.+. +.+...+ +..++. .-..+...+|.. ..+.+-+-..++++. ...+||
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~-~~g~~~a-LAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~------~~~~VV 75 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLA-REGLTAA-LAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMA------SRTQVV 75 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHH-HcCCchh-hccCCHHHHHHHHHhcCccccccCCCCHHHHHHHH------hcceEE
Confidence 345679999999999999999987 4566552 222211 001122222321 011111113445555 389999
Q ss_pred EEccCchhH--HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHH-HHHhhhcCeEEc
Q 031216 111 IDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSAL-SAFCDKASMVST 160 (163)
Q Consensus 111 IDfT~p~~~--~~~~~~al~~G~~vVigttg-~~-~e~~~~L-~~~A~~~~Vv~t 160 (163)
+.+.-|-.. .+.+..|+.+|.|-.= -|| .. -|+...+ .+.|++.|+..-
T Consensus 76 lncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A~~~Ga~Ii 129 (382)
T COG3268 76 LNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQAADAGARII 129 (382)
T ss_pred EeccccccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHHHhcCCEEe
Confidence 988877665 5899999999999752 333 11 2444444 667887777653
No 319
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.23 E-value=0.045 Score=48.02 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=61.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhcc-CCCCC----CcceeCCHHHHHhcccccCCccE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV 109 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~-~~~~eLvgvid~~~~g~~~~~l~g-~~~~~----gi~v~~~l~ell~~~~~~~~~DV 109 (163)
-+++|+| +|.+++.+++.+.. .|+++=+-+.+++.. .+..+.. +.... .+.+.+|.++++. ..|+
T Consensus 156 ~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~--~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI 226 (379)
T PRK06199 156 KVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQK--SLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI 226 (379)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHH--HHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence 6899999 69999999999887 456888888886531 1112111 00011 2556799999985 8999
Q ss_pred EEEccCchh----HHHHH-HHHHHcCCcEE-EeCCCCC
Q 031216 110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHIQ 141 (163)
Q Consensus 110 VIDfT~p~~----~~~~~-~~al~~G~~vV-igttg~~ 141 (163)
|+=+|.... ..+++ ...++.|.||. +|+-.++
T Consensus 227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~eld 264 (379)
T PRK06199 227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRID 264 (379)
T ss_pred EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccCC
Confidence 885553111 11333 33467888876 4444444
No 320
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=95.20 E-value=0.042 Score=48.15 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=63.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhhhc-cCCCCCCccee--
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGMVC-DMEQPLEIPVM-- 91 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~g~~----~~~l~-g~~~~~gi~v~-- 91 (163)
...|.|+|| |+.|--.+..+. ..|+-=.|++|.+. .|+. +..++ .+.....+..|
T Consensus 66 ~s~VLVVGa-GGLGcPa~~YLa-aaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~ 143 (427)
T KOG2017|consen 66 NSSVLVVGA-GGLGCPAAQYLA-AAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNE 143 (427)
T ss_pred CccEEEEcc-CCCCCHHHHHHH-HcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechh
Confidence 357999995 999999988876 67888889998431 1111 11111 11112222222
Q ss_pred ----CCHHHHHhcccccCCccEEEEcc-CchhHHHHHHHHHHcCCcEEEeCC
Q 031216 92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 92 ----~~l~ell~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigtt 138 (163)
++..+++ +..|||.|+| ++.+-+-.-..|..-|+++|+|..
T Consensus 144 ~L~~sNa~~Ii------~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa 189 (427)
T KOG2017|consen 144 FLSSSNAFDII------KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA 189 (427)
T ss_pred hccchhHHHHh------hccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence 4555666 4899999999 455556666889999999999874
No 321
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.16 E-value=0.29 Score=41.96 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.-.++||+| +|++|+.+++.+..-=|+++. ..|+... .+... ..++. +.++++++. ..|+|+..
T Consensus 144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~-~~~~~~~-~~~~~------~~~~~-~~~l~ell~------~sDvv~lh 207 (323)
T PRK15409 144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPIL-YNARRHH-KEAEE------RFNAR-YCDLDTLLQ------ESDFVCII 207 (323)
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhHH------hcCcE-ecCHHHHHH------hCCEEEEe
Confidence 347899999 799999999987623478887 3554311 11111 22332 569999996 89998855
Q ss_pred c
Q 031216 114 T 114 (163)
Q Consensus 114 T 114 (163)
.
T Consensus 208 ~ 208 (323)
T PRK15409 208 L 208 (323)
T ss_pred C
Confidence 4
No 322
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=95.16 E-value=0.18 Score=44.33 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=61.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---------------C---cchhhhccCCCCCCccee---C
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---------------G---EDIGMVCDMEQPLEIPVM---S 92 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~---------------g---~~~~~l~g~~~~~gi~v~---~ 92 (163)
|.|+.|.|++|-+|...++.+.++|+- +++++....+. . ....+.+... ..++.++ .
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~-~~~~~v~~G~~ 79 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL-LPGTEVLVGEE 79 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh-ccCceEEecHH
Confidence 579999999999999999999998875 88888773210 0 0000111000 0123333 2
Q ss_pred CHHHHHhcccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCC
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigtt 138 (163)
.+.++.. ..++|+|+..-.=.....-...++++||.+....-
T Consensus 80 ~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANK 121 (385)
T COG0743 80 GLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANK 121 (385)
T ss_pred HHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeecch
Confidence 3334443 46789988554444445566788999999887554
No 323
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=95.13 E-value=0.18 Score=41.19 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
||.|+|++|.+|+.+++.+.+ .+.++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence 689999999999999999875 46787654
No 324
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.13 E-value=0.17 Score=41.96 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=56.4
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----e---CCHHHHHhcccccCC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA 106 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~---~~l~ell~~~~~~~~ 106 (163)
.|.+|.|.|++ .=|+.+++.+.+. +..+..-+... .|. .. ..++++ + +++.+.+. +.+
T Consensus 1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~-~g~--~~------~~~~~v~~G~l~~~~~l~~~l~----~~~ 65 (248)
T PRK08057 1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGR-TGG--PA------DLPGPVRVGGFGGAEGLAAYLR----EEG 65 (248)
T ss_pred CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccC-CCC--cc------cCCceEEECCCCCHHHHHHHHH----HCC
Confidence 36789999964 6689999888754 67666544432 222 11 112222 2 34455554 489
Q ss_pred ccEEEEccCchhH---HHHHHHHHHcCCcEE
Q 031216 107 RAVVIDFTDASTV---YDNVKQATAFGMRSV 134 (163)
Q Consensus 107 ~DVVIDfT~p~~~---~~~~~~al~~G~~vV 134 (163)
+++|||.|+|-+. ......|.+.|++.+
T Consensus 66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 66 IDLVIDATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999654 345578899999988
No 325
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.12 E-value=0.11 Score=43.15 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=29.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
.+|.|.|++|.+|+.+++.+.+ .+.++++.+++.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~~ 39 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRDL 39 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 5899999999999999999885 588988877643
No 326
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.11 E-value=0.13 Score=45.40 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=65.3
Q ss_pred EEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhhh----------------ccCCCCCCcceeCCHHHHHh
Q 031216 40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGMV----------------CDMEQPLEIPVMSDLTMVLG 99 (163)
Q Consensus 40 VvGa~G~mG~~i~~~i~~~~~-~eLvgvid~~~~g---~~~~~l----------------~g~~~~~gi~v~~~l~ell~ 99 (163)
|.|+||-+|+..++.+.++|+ ++++++...+... +.+.++ .......++.++...+.+.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~- 79 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLI- 79 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHH-
Confidence 579999999999999988755 9999998843110 001110 0000011233433332222
Q ss_pred cccccCCccEEEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 031216 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155 (163)
Q Consensus 100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~ 155 (163)
++.+..++|.|+....=.....-...+++.|+.+-...-+---.-.+.+.+.+++.
T Consensus 80 ~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~ 135 (383)
T PRK12464 80 AVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQN 135 (383)
T ss_pred HHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHc
Confidence 12223578999966555556777888999999988755432122233444455543
No 327
>PRK05865 hypothetical protein; Provisional
Probab=95.10 E-value=0.18 Score=48.71 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=27.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+||.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence 4899999999999999999874 6888887654
No 328
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.08 E-value=0.27 Score=40.46 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=55.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh--------hhc-cCCCCCCccee-CCH
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG--------MVC-DMEQPLEIPVM-SDL 94 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-----~g-------~~~~--------~l~-g~~~~~gi~v~-~~l 94 (163)
||.|+| .|..|.++++.+. ..|+.=.-++|.+. .+ .|++ +.+ .+.....+..+ ..+
T Consensus 1 kVlvvG-~GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 689999 5999999999997 56777777888421 01 1111 000 00001112111 222
Q ss_pred -------HHHHhcccccCCccEEEEccCchhHH-HHHHHHHHcCCcEEEeCC
Q 031216 95 -------TMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 95 -------~ell~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVigtt 138 (163)
++.+ .++|+||++...-... ..-..|.+.++|+|-+-+
T Consensus 79 ~~~~~~~~~f~------~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~ 124 (234)
T cd01484 79 GPEQDFNDTFF------EQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT 124 (234)
T ss_pred ChhhhchHHHH------hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 2333 3899999987544444 455788999999986544
No 329
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.07 E-value=0.18 Score=44.77 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=50.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g-~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..||.|+| .|..|...++.+. ..+.+++ ++|.... . ....+.+ .+.|+.++..-...+. ..+|+||.
T Consensus 16 ~~~v~viG-~G~~G~~~A~~L~-~~G~~V~-~~d~~~~~~~~~~~~~l---~~~gv~~~~~~~~~~~-----~~~D~Vv~ 84 (480)
T PRK01438 16 GLRVVVAG-LGVSGFAAADALL-ELGARVT-VVDDGDDERHRALAAIL---EALGATVRLGPGPTLP-----EDTDLVVT 84 (480)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCchhhhHHHHHHH---HHcCCEEEECCCcccc-----CCCCEEEE
Confidence 35899999 5999999988876 5788866 4663211 1 1111111 1446666522111122 47898885
Q ss_pred cc-CchhHHHHHHHHHHcCCcEE
Q 031216 113 FT-DASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 113 fT-~p~~~~~~~~~al~~G~~vV 134 (163)
.+ .|. ..+.+..+.+.|++++
T Consensus 85 s~Gi~~-~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 85 SPGWRP-DAPLLAAAADAGIPVW 106 (480)
T ss_pred CCCcCC-CCHHHHHHHHCCCeec
Confidence 44 222 2245566677788764
No 330
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.07 E-value=0.12 Score=44.24 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=60.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVVIDf 113 (163)
-+|.|.|++|..|...++.+. .-+...+++..++.. .+...-+|- ..+--|. ++.+.+.++..+..+|+|+|.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~k-~~~~~~lGA---d~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSEK-LELLKELGA---DHVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CEEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHHH-HHHHHhcCC---CEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 579999999999999988876 455466666664321 111111111 1111132 254444333233579999998
Q ss_pred cCchhHHHHHHHHHHcCCcEEEeCCC
Q 031216 114 TDASTVYDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 114 T~p~~~~~~~~~al~~G~~vVigttg 139 (163)
.-.+.+.+.+......|.-+.+|.++
T Consensus 219 vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 219 VGGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCHHHHHHHHHHhccCCEEEEEecCC
Confidence 88888877666666667777778764
No 331
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.06 E-value=0.4 Score=40.43 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=54.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eL-vgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
+.+|+|+| .|.||+.+++.+. ..+... +-..|...........+|.. . ....+...... ...|+||-.
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~-~~g~~v~i~g~d~~~~~~~~a~~lgv~--d--~~~~~~~~~~~-----~~aD~Viva 71 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALK-EAGLVVRIIGRDRSAATLKAALELGVI--D--ELTVAGLAEAA-----AEADLVIVA 71 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHH-HcCCeEEEEeecCcHHHHHHHhhcCcc--c--ccccchhhhhc-----ccCCEEEEe
Confidence 57899999 7999999999987 456655 32333221111111112211 0 00122212221 478999955
Q ss_pred cCchhHHHHHHHHHH-cCCc-EEEeCCCCCHHHHHHHHHHh
Q 031216 114 TDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC 152 (163)
Q Consensus 114 T~p~~~~~~~~~al~-~G~~-vVigttg~~~e~~~~L~~~A 152 (163)
++.....+.++.... -... +|+.++..-..-.+.+.+..
T Consensus 72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 72 VPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred ccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 555566677665553 2222 34555544334344444443
No 332
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.04 E-value=0.05 Score=46.50 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=60.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCC--CCCcceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~--~~gi~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..+++|+| +|..++.+++.+.....++=+-+.+++.. +...+...-. ...+.+.++.+++.. ..|+|+=
T Consensus 128 ~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~--~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~t 198 (315)
T PRK06823 128 VSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSET--ALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVT 198 (315)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEE
Confidence 46899999 69999999999998888888888886532 2222221001 123444789999884 9999985
Q ss_pred ccCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216 113 FTDASTVYDNV-KQATAFGMRSV-VY 136 (163)
Q Consensus 113 fT~p~~~~~~~-~~al~~G~~vV-ig 136 (163)
+| +... +.+ ...++.|.||. ||
T Consensus 199 aT-~s~~-P~~~~~~l~~G~hi~~iG 222 (315)
T PRK06823 199 TT-PSRE-PLLQAEDIQPGTHITAVG 222 (315)
T ss_pred ec-CCCC-ceeCHHHcCCCcEEEecC
Confidence 44 3322 222 23467898876 44
No 333
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.04 E-value=0.14 Score=46.43 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
.||+|+| .|.||+.++..+. ..|++++ ++|++
T Consensus 6 ~kV~VIG-aG~MG~gIA~~la-~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIG-AGAMGAGIAQVAA-SAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEEC-cCHHHHHHHHHHH-hCCCeEE-EEeCC
Confidence 5799999 5999999999987 5689887 56753
No 334
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.01 E-value=0.031 Score=42.17 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=42.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
+||+|+|++|..|..++-.+...+-..=..++|... .| .|+.+..... ...+.+..+..+.+ .+.|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~------~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL-PSPVRITSGDYEAL------KDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS-TEEEEEEESSGGGG------TTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc-cccccccccccccc------ccccEE
Confidence 599999977999999999887664433244788541 12 2333322211 12334444444445 489998
Q ss_pred EEc
Q 031216 111 IDF 113 (163)
Q Consensus 111 IDf 113 (163)
|..
T Consensus 74 vit 76 (141)
T PF00056_consen 74 VIT 76 (141)
T ss_dssp EET
T ss_pred EEe
Confidence 854
No 335
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.99 E-value=0.3 Score=42.75 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=51.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhccCCCCCCcceeCCH-HHHHhcccccCCccEEEE
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMSDL-TMVLGSISQSKARAVVID 112 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~---~l~g~~~~~gi~v~~~l-~ell~~~~~~~~~DVVID 112 (163)
||.++| .|+.|..+++.+. ..|.++. +.|.... .+.. .++. ...|+.++... .+.+ ..+|+||
T Consensus 1 ~~~~iG-~G~~G~a~a~~l~-~~G~~V~-~sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~~~~~------~~~d~vv- 67 (433)
T TIGR01087 1 KILILG-LGKTGRAVARFLH-KKGAEVT-VTDLKPN-EELEPSMGQLR--LNEGSVLHTGLHLEDL------NNADLVV- 67 (433)
T ss_pred CEEEEE-eCHhHHHHHHHHH-HCCCEEE-EEeCCCC-ccchhHHHHHh--hccCcEEEecCchHHh------ccCCEEE-
Confidence 589999 6999998888876 6788877 4774321 1111 1110 02356554222 2333 3789877
Q ss_pred cc--CchhHHHHHHHHHHcCCcEEE
Q 031216 113 FT--DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT--~p~~~~~~~~~al~~G~~vVi 135 (163)
.| .|.. .+.+..|.+.|++++.
T Consensus 68 ~sp~i~~~-~p~~~~a~~~~i~i~~ 91 (433)
T TIGR01087 68 KSPGIPPD-HPLVQAAAKRGIPVVG 91 (433)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEE
Confidence 55 2433 3566777888888765
No 336
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.97 E-value=0.074 Score=48.09 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=56.9
Q ss_pred ceeeeccCCCCC----CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-----cCCCCcchhhhccCCCCCCcceeC
Q 031216 22 KRFISCSTNPPQ----SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-----SHSVGEDIGMVCDMEQPLEIPVMS 92 (163)
Q Consensus 22 ~~~~~~~~~~~~----~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid-----~~~~g~~~~~l~g~~~~~gi~v~~ 92 (163)
-||+-+.+.|-. +..+|+|+| +|..|+.++..+. ..++.++-... ....+++... ..|..+ .
T Consensus 19 ~r~~~r~ef~~~~~~LkgKtIaIIG-yGSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~kA~------~dGF~v-~ 89 (487)
T PRK05225 19 CRFMDRDEFADGASYLKGKKIVIVG-CGAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRKAT------ENGFKV-G 89 (487)
T ss_pred ceecchhhccchhHHhCCCEEEEEc-cCHHHHHHhCCCc-cccceeEEeccccccccccchHHHHH------hcCCcc-C
Confidence 366666666433 357999999 7999998887765 56888873332 2122222211 123343 5
Q ss_pred CHHHHHhcccccCCccEEEEccCchhH----HHHHHHHHHcCCcE
Q 031216 93 DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRS 133 (163)
Q Consensus 93 ~l~ell~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~v 133 (163)
++++++. .+|+|+..+ |+.. .+.+...++.|..+
T Consensus 90 ~~~Ea~~------~ADvVviLl-PDt~q~~v~~~i~p~LK~Ga~L 127 (487)
T PRK05225 90 TYEELIP------QADLVINLT-PDKQHSDVVRAVQPLMKQGAAL 127 (487)
T ss_pred CHHHHHH------hCCEEEEcC-ChHHHHHHHHHHHhhCCCCCEE
Confidence 7888875 999999554 5443 23333444444443
No 337
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=94.96 E-value=0.094 Score=42.82 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=37.8
Q ss_pred EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 39 ~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.|+|++|.+|+.+++.+.+ .+.+++.+.++. . + ++.-..++++++.. .++|+||++.
T Consensus 1 lItGa~GfiG~~l~~~L~~-~g~~v~~~~~~~-~----~---------Dl~~~~~l~~~~~~----~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEA-LGFTNLVLRTHK-E----L---------DLTRQADVEAFFAK----EKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHh-CCCcEEEeeccc-c----C---------CCCCHHHHHHHHhc----cCCCEEEEee
Confidence 3789999999999999975 466655443321 1 1 12213466677663 5789999885
No 338
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.96 E-value=0.19 Score=39.44 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
|.++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLE-RGWQVTATVR 33 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHh-CCCEEEEEeC
Confidence 35799999999999999999985 5888876543
No 339
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.93 E-value=0.047 Score=46.01 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVI 111 (163)
...||+|+| .|+||+.+++.+... ++++. +++++. .+..... ..+... ++++++++. +.|+||
T Consensus 150 ~gk~v~IiG-~G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLG-FGRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVI 214 (287)
T ss_pred CCCEEEEEc-ChHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEE
Confidence 346899999 699999999999754 67766 556532 1111111 112211 345666664 889988
Q ss_pred EccCchhH
Q 031216 112 DFTDASTV 119 (163)
Q Consensus 112 DfT~p~~~ 119 (163)
..+ |...
T Consensus 215 nt~-P~~i 221 (287)
T TIGR02853 215 NTI-PALV 221 (287)
T ss_pred ECC-ChHH
Confidence 644 5443
No 340
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=94.93 E-value=0.081 Score=46.93 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=77.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc---e-eCCHH-HHHhcccccCCccE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---V-MSDLT-MVLGSISQSKARAV 109 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~---v-~~~l~-ell~~~~~~~~~DV 109 (163)
+.+|.+.| +|++.+-.+..+.+..++++.-+.+.. .++.++.. ..++. . ..+.+ .+... -.+.|+
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~~---v~~~D~ 71 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRKE---VKPLDL 71 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHhh---hcccce
Confidence 45799999 699999999999999999999776642 23333331 11121 1 12222 11111 148899
Q ss_pred EEEccCchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcC
Q 031216 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTG 161 (163)
Q Consensus 110 VIDfT~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg 161 (163)
++-.++-..+.-.++.|+.++.++|. +.+-..+.++|.+.+...|+...+
T Consensus 72 viSLlP~t~h~lVaK~~i~~~~~~vt--sSyv~pe~~~L~~~~v~AG~ti~~ 121 (445)
T KOG0172|consen 72 VISLLPYTFHPLVAKGCIITKEDSVT--SSYVDPELEELEKAAVPAGSTIMN 121 (445)
T ss_pred eeeeccchhhHHHHHHHHHhhccccc--ccccCHHHHhhhhhccCCCceEec
Confidence 88555444556677899999999764 446555689999999999987654
No 341
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.93 E-value=0.25 Score=44.35 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=54.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC-----CC-------cchh--------hhc-cCCCCCCcce
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSHS-----VG-------EDIG--------MVC-DMEQPLEIPV 90 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~-----eLvgvid~~~-----~g-------~~~~--------~l~-g~~~~~gi~v 90 (163)
||.|+| +|..|.++++.+. ..|+ .-+-++|.+. .+ .+++ +.+ .+.....+..
T Consensus 1 kVlvVG-aGGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 689999 5999999999987 6788 5566788421 11 1111 000 0100111222
Q ss_pred e-CCH---------HHHHhcccccCCccEEEEccCc-hhHHHHHHHHHHcCCcEEEeC
Q 031216 91 M-SDL---------TMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 91 ~-~~l---------~ell~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigt 137 (163)
+ ..+ ++.+ ..+|+||++... ++-...-..|...++|+|-+-
T Consensus 79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESG 130 (435)
T ss_pred EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 2 111 1223 378999988744 444455688999999998443
No 342
>PRK12320 hypothetical protein; Provisional
Probab=94.92 E-value=0.17 Score=47.87 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=51.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-hhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-IGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~-~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|||.|+|++|.+|+.+++.+.+ .+.++.++........+ -.++. ..++.- ..+.+++ .++|+||.+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~~~~~~~ve~v----~~Dl~d-~~l~~al------~~~D~VIHLA 68 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPHDALDPRVDYV----CASLRN-PVLQELA------GEADAVIHLA 68 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChhhcccCCceEE----EccCCC-HHHHHHh------cCCCEEEEcC
Confidence 4899999999999999999874 67888875432110000 00000 001100 1133444 3799999886
Q ss_pred Cch----------hHHHHHHHHHHcCCcEEE
Q 031216 115 DAS----------TVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 115 ~p~----------~~~~~~~~al~~G~~vVi 135 (163)
.+. .....+..|.+.|+.+|.
T Consensus 69 a~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~ 99 (699)
T PRK12320 69 PVDTSAPGGVGITGLAHVANAAARAGARLLF 99 (699)
T ss_pred ccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence 421 123456777788888764
No 343
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.91 E-value=0.064 Score=46.57 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~ 69 (163)
..+|+|+||+|.||+.+++.+....+. +|+ ++++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 368999999999999999999754443 444 4454
No 344
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.89 E-value=0.11 Score=46.00 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=48.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..+|+|+| +|.||+.+++.+.. .++.-+-+++++. .++.++.. ..+ ...++++.+++. .+|+||.
T Consensus 180 ~~~VlViG-aG~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~ 246 (417)
T TIGR01035 180 GKKALLIG-AGEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVIS 246 (417)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEE
Confidence 36899999 59999999999876 4643344566542 12222221 111 112346666664 8999998
Q ss_pred ccC-chhH--HHHHHHHHH
Q 031216 113 FTD-ASTV--YDNVKQATA 128 (163)
Q Consensus 113 fT~-p~~~--~~~~~~al~ 128 (163)
+|. |+.. .+.+..+..
T Consensus 247 aT~s~~~ii~~e~l~~~~~ 265 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALR 265 (417)
T ss_pred CCCCCCceEcHHHHHHHHh
Confidence 873 3333 355665544
No 345
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.88 E-value=0.3 Score=42.00 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=52.1
Q ss_pred ccccceeeeccCCCCC--CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH
Q 031216 18 NVKAKRFISCSTNPPQ--SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95 (163)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ 95 (163)
.++..+|-. ...+.. .-..|||+| +|++|+.+++.+. .=|+++.+ +|+.. .++... ..++.-.+++|
T Consensus 124 ~~~~g~W~~-~~~~g~el~gkTvGIiG-~G~IG~~va~~l~-afgm~v~~-~d~~~-~~~~~~------~~~~~~~~~Ld 192 (324)
T COG0111 124 SQRRGEWDR-KAFRGTELAGKTVGIIG-LGRIGRAVAKRLK-AFGMKVIG-YDPYS-PRERAG------VDGVVGVDSLD 192 (324)
T ss_pred HHHcCCccc-cccccccccCCEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-ECCCC-chhhhc------cccceecccHH
Confidence 445555544 333333 246899999 7999999999987 55899985 56411 111111 22344457999
Q ss_pred HHHhcccccCCccEEEEcc
Q 031216 96 MVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 96 ell~~~~~~~~~DVVIDfT 114 (163)
+++. ..|+|+-.+
T Consensus 193 ~lL~------~sDiv~lh~ 205 (324)
T COG0111 193 ELLA------EADILTLHL 205 (324)
T ss_pred HHHh------hCCEEEEcC
Confidence 9996 899988655
No 346
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=94.86 E-value=0.061 Score=45.98 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=50.0
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhccCCCCCCccee---CCHHHHHhccccc
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQS 104 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~ 104 (163)
..+.+.||+|.||.|++|+-+.-.+...|.+.-.+.+|... .+.|+.. +.....+.-| +.++.++
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSH---I~T~s~V~g~~g~~~L~~al------ 94 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSH---INTNSSVVGFTGADGLENAL------ 94 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccc---cCCCCceeccCChhHHHHHh------
Confidence 44567999999999999999988888899998899999432 2223222 2112222223 4566666
Q ss_pred CCccEEEEc
Q 031216 105 KARAVVIDF 113 (163)
Q Consensus 105 ~~~DVVIDf 113 (163)
+..|+||.-
T Consensus 95 ~~advVvIP 103 (345)
T KOG1494|consen 95 KGADVVVIP 103 (345)
T ss_pred cCCCEEEec
Confidence 489987753
No 347
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=94.81 E-value=0.27 Score=37.24 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=63.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc--
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-- 114 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-- 114 (163)
+|+++.=+|.||..++..+. ..++-+..++.. |.++ + -++.++++.+.++++..+|.-+-
T Consensus 3 ~valisQSG~~~~~~~~~~~-~~g~g~s~~vs~---Gn~~----------d----v~~~d~l~~~~~D~~t~~I~ly~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQ-DRGIGFSYVVSV---GNEA----------D----VDFADLLEYLAEDPDTRVIVLYLEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHH-HTT-EESEEEE----TT-S----------S----S-HHHHHHHHCT-SS--EEEEEES-
T ss_pred CEEEEECCHHHHHHHHHHHH-HcCCCeeEEEEe---Cccc----------c----CCHHHHHHHHhcCCCCCEEEEEccC
Confidence 57888889999999999877 558877776663 2111 1 14445555554567777776553
Q ss_pred --CchhHHHHHHHHHHcCCcEEEeCCCCCHH--------------HHHHHHHHhhhcCeEEcC
Q 031216 115 --DASTVYDNVKQATAFGMRSVVYVPHIQLE--------------TVSALSAFCDKASMVSTG 161 (163)
Q Consensus 115 --~p~~~~~~~~~al~~G~~vVigttg~~~e--------------~~~~L~~~A~~~~Vv~tg 161 (163)
.|....+.++.+..+ ||||+-++|-+++ ..+...++.++.||+..-
T Consensus 65 ~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~ 126 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRVD 126 (138)
T ss_dssp -S-HHHHHHHHHHHCCC-S-EEEEE---------------------HHHHHHHHHHCTEEEES
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEEC
Confidence 577777888877777 9999877764322 345678888999988754
No 348
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.81 E-value=0.19 Score=47.30 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=27.8
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
....||+|+|+ |.||+.++..+....|++++ ++|.
T Consensus 302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~ 336 (699)
T TIGR02440 302 AKIKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI 336 (699)
T ss_pred ccccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 45568999995 99999999877655788887 5674
No 349
>PLN02240 UDP-glucose 4-epimerase
Probab=94.78 E-value=0.32 Score=40.68 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
+.||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 36899999999999999999875 578888754
No 350
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.74 E-value=0.076 Score=44.94 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.+||.|+|++|.+|+.+++.+.+ .+.+++++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence 36899999999999999999985 5889887654
No 351
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.74 E-value=0.3 Score=46.14 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.7
Q ss_pred CCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 32 ~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+....||+|+|+ |.||+.++..+. ..|++++ ++|.
T Consensus 310 ~~~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~ 344 (715)
T PRK11730 310 AKPVKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKDI 344 (715)
T ss_pred ccccceEEEECC-chhHHHHHHHHH-hCCCeEE-EEeC
Confidence 334568999995 999999999877 5689887 5674
No 352
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.73 E-value=0.47 Score=42.20 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhccCCCCCC-cceeCCHHHHHhcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDMEQPLE-IPVMSDLTMVLGSI 101 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~-------~g------~~~~~l~g~~~~~g-i~v~~~l~ell~~~ 101 (163)
|||.|+| +|+.|-...-.+. .-|.++++ +|... .| ..+.+++......| ...++|+++++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~-- 75 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLA-ELGHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK-- 75 (414)
T ss_pred CceEEEC-CchHHHHHHHHHH-HcCCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence 6899999 7999998887776 45788886 46320 11 11333332110112 566788888875
Q ss_pred cccCCccEEEEcc-Cchh---H--HHHHHHHH------HcCCcEEEeCC----CCCHHHHHHHHHH
Q 031216 102 SQSKARAVVIDFT-DAST---V--YDNVKQAT------AFGMRSVVYVP----HIQLETVSALSAF 151 (163)
Q Consensus 102 ~~~~~~DVVIDfT-~p~~---~--~~~~~~al------~~G~~vVigtt----g~~~e~~~~L~~~ 151 (163)
..|+++.++ +|.. . ..++..++ ..+.++|+.++ |++++-.+.+.+.
T Consensus 76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~ 137 (414)
T COG1004 76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREE 137 (414)
T ss_pred ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhh
Confidence 899988765 3321 1 23333322 22447777675 6665544444443
No 353
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=94.73 E-value=0.41 Score=39.16 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-CchhHHH
Q 031216 44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD 121 (163)
Q Consensus 44 ~G~mG~~i~~~i~~~~~~e-Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT-~p~~~~~ 121 (163)
.|.-|..++..+.+.+++. .+.+++.+. ...++ .+++++.+..+ .+.|++|..+ +|+...+
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~ 67 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE 67 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence 5889999999999888887 333444321 11111 24566666542 6899999877 7888899
Q ss_pred HHHHHHHcCCcEEEeCCCCC-HHHHHHHHHHhhhcCe
Q 031216 122 NVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASM 157 (163)
Q Consensus 122 ~~~~al~~G~~vVigttg~~-~e~~~~L~~~A~~~~V 157 (163)
.++.+.+.|+..||....-. ....+.|++.+++.|+
T Consensus 68 l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi 104 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGI 104 (217)
T ss_pred HHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCc
Confidence 99999999988887443222 2455678888888763
No 354
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=94.72 E-value=0.17 Score=41.99 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=52.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce----e---CCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v----~---~~l~ell~~~~~~~~~D 108 (163)
|||.|.|++ .=|+.+++.+.+... -++.++- +. |.+...-. .....+ + +.+.+.+. +.++|
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t-~~-g~~~~~~~----~~~~~v~~G~lg~~~~l~~~l~----~~~i~ 68 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVAT-SY-GGELLKPE----LPGLEVRVGRLGDEEGLAEFLR----ENGID 68 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEh-hh-hHhhhccc----cCCceEEECCCCCHHHHHHHHH----hCCCc
Confidence 689999965 668889999886554 2222222 11 22111100 011111 1 33445554 48999
Q ss_pred EEEEccCchhH---HHHHHHHHHcCCcEE
Q 031216 109 VVIDFTDASTV---YDNVKQATAFGMRSV 134 (163)
Q Consensus 109 VVIDfT~p~~~---~~~~~~al~~G~~vV 134 (163)
+|||.|+|-+. ......|.+.|++.+
T Consensus 69 ~vIDATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 69 AVIDATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred EEEECCCchHHHHHHHHHHHHhhcCcceE
Confidence 99999999654 345578899999988
No 355
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=94.72 E-value=0.04 Score=48.44 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=72.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCC-C---CcchhhhccC--CCCCCcceeCC-----HHHHHhc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHS-V---GEDIGMVCDM--EQPLEIPVMSD-----LTMVLGS 100 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~---~~~~eLvgvid~~~-~---g~~~~~l~g~--~~~~gi~v~~~-----l~ell~~ 100 (163)
..-+.|.||+|..|+.+++.+.+ .++..+.-+-.+.. . -+.+++-.+- ++.. +.+.++ ++|+.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~ema-- 81 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMA-- 81 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHH--
Confidence 46689999999999999998875 35555543322210 0 0111111110 1111 333333 55554
Q ss_pred ccccCCccEEEEccCchhH--HHHHHHHHHcCCcEE--EeCCCCCHHHHHHHHHHhhhcCeEEc
Q 031216 101 ISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMVST 160 (163)
Q Consensus 101 ~~~~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vV--igttg~~~e~~~~L~~~A~~~~Vv~t 160 (163)
...-||+++.-|-.+ ...+++|+++|.|-| .|.|.|=+.-..+-.+.|++.||..-
T Consensus 82 ----k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIV 141 (423)
T KOG2733|consen 82 ----KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIV 141 (423)
T ss_pred ----hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEE
Confidence 478899988888776 578899999999876 55555522222345667888888654
No 356
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.72 E-value=0.26 Score=42.04 Aligned_cols=58 Identities=17% Similarity=0.012 Sum_probs=41.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|||+| +|++|+.+++.+. -=|+++.+ +|+.. .+ . .. -+.++++++. ..|+|+...
T Consensus 148 gktvgIiG-~G~IG~~vA~~l~-~fgm~V~~-~~~~~--~~--~--------~~-~~~~l~ell~------~sDiv~l~l 205 (317)
T PRK06487 148 GKTLGLLG-HGELGGAVARLAE-AFGMRVLI-GQLPG--RP--A--------RP-DRLPLDELLP------QVDALTLHC 205 (317)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCC--Cc--c--------cc-cccCHHHHHH------hCCEEEECC
Confidence 36899999 7999999999987 45889875 45421 10 0 01 1358999995 899988655
No 357
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.71 E-value=0.14 Score=45.31 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=47.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..+|+|+| +|.||+.+++.+.. .+.+-+-+++++. .++..+.. ..+ +..++++.+.+. ++|+||.
T Consensus 182 ~~~vlViG-aG~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~ 248 (423)
T PRK00045 182 GKKVLVIG-AGEMGELVAKHLAE-KGVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVIS 248 (423)
T ss_pred CCEEEEEC-chHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEE
Confidence 36899999 59999999998874 5664444566542 12222221 112 212345555553 8999998
Q ss_pred ccC-chhH--HHHHHHHH
Q 031216 113 FTD-ASTV--YDNVKQAT 127 (163)
Q Consensus 113 fT~-p~~~--~~~~~~al 127 (163)
+|. |+.. .+.+..++
T Consensus 249 aT~s~~~~i~~~~l~~~~ 266 (423)
T PRK00045 249 STGAPHPIIGKGMVERAL 266 (423)
T ss_pred CCCCCCcEEcHHHHHHHH
Confidence 873 3333 45555554
No 358
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=94.71 E-value=0.046 Score=42.70 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=42.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-CCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
|.|+|++|.+|+.+++.+. ..+.+++.+..++............. ...++.=-+++++++.. .++|+||++..
T Consensus 1 IlI~GatG~iG~~l~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLL-KKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHH-HcCCccccccccccccccccccceEEEEEeeccccccccccccc----cCceEEEEeec
Confidence 7899999999999999998 56777775555432111000000000 01111111355666653 47899999864
No 359
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=94.70 E-value=0.084 Score=44.37 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+||.|.|++|.+|+.+++.+.+. +.+.+..++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence 48999999999999999999865 444333455
No 360
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.64 E-value=0.085 Score=44.41 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+|.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLE-KGYEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEec
Confidence 799999999999999999985 5889887644
No 361
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.39 Score=43.13 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=52.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVVIDf 113 (163)
.||.|+| .|+.|...++.+. ..+.++.+ .|.... ....+. +.++.++. ...+.+. .+|+||..
T Consensus 13 ~~v~V~G-~G~sG~aa~~~L~-~~G~~v~~-~D~~~~--~~~~l~----~~g~~~~~~~~~~~~l~------~~D~VV~S 77 (488)
T PRK03369 13 APVLVAG-AGVTGRAVLAALT-RFGARPTV-CDDDPD--ALRPHA----ERGVATVSTSDAVQQIA------DYALVVTS 77 (488)
T ss_pred CeEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EcCCHH--HHHHHH----hCCCEEEcCcchHhHhh------cCCEEEEC
Confidence 4799999 6999999998765 67888876 774321 122211 33554432 2233343 78988854
Q ss_pred c-CchhHHHHHHHHHHcCCcEEE
Q 031216 114 T-DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T-~p~~~~~~~~~al~~G~~vVi 135 (163)
. .|.. .+.+..+.+.|++++.
T Consensus 78 pGi~~~-~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 78 PGFRPT-APVLAAAAAAGVPIWG 99 (488)
T ss_pred CCCCCC-CHHHHHHHHCCCcEee
Confidence 4 3433 3567777788888654
No 362
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.55 E-value=0.5 Score=41.61 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=50.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-C-HHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~-l~ell~~~~~~~~~DVVIDf 113 (163)
--|+|+| .|+.|..+++.+. ..|.++. +.|.........++... ..++.++. . -.+.+ .++|+|| .
T Consensus 7 ~~~~v~G-~G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~l~~~--~~g~~~~~~~~~~~~~------~~~d~vV-~ 74 (448)
T PRK03803 7 GLHIVVG-LGKTGLSVVRFLA-RQGIPFA-VMDSREQPPGLDTLARE--FPDVELRCGGFDCELL------VQASEII-I 74 (448)
T ss_pred CeEEEEe-ecHhHHHHHHHHH-hCCCeEE-EEeCCCCchhHHHHHhh--cCCcEEEeCCCChHHh------cCCCEEE-E
Confidence 3589999 5999999777766 6788876 47743211111122100 03666642 1 22334 2789877 5
Q ss_pred cC--chhHHHHHHHHHHcCCcEEE
Q 031216 114 TD--ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T~--p~~~~~~~~~al~~G~~vVi 135 (163)
|+ |.. .+.+..|.+.|++++.
T Consensus 75 sp~i~~~-~p~~~~a~~~~i~i~~ 97 (448)
T PRK03803 75 SPGLALD-TPALRAAAAMGIEVIG 97 (448)
T ss_pred CCCCCCC-CHHHHHHHHCCCcEEE
Confidence 52 333 3566777888888764
No 363
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=94.54 E-value=0.53 Score=42.41 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=54.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.|+.|+| +|..|+.+++.+.+++ +.+++|.+|.+..+. . -.++|++.+.+++... .....+|++|-.
T Consensus 147 rrvLIIG-aG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~---~------i~gvPVlg~~d~l~~~-~~~~~v~vIIAi 215 (476)
T PRK15204 147 KKTIILG-SGQNARGAYSALQSEEMMGFDVIAFFDTDASDA---E------INMLPVIKDTEIIWDL-NRTGDVHYILAY 215 (476)
T ss_pred CeEEEEE-CCHHHHHHHHHHHhCccCCcEEEEEEcCCcccc---c------cCCCcccCCHHHHHHH-HHhCCCcEEEEe
Confidence 5799999 5999999999998665 789999999543211 1 2467777776543110 012456764432
Q ss_pred cCch--hHHHHHHHHHHcCCc
Q 031216 114 TDAS--TVYDNVKQATAFGMR 132 (163)
Q Consensus 114 T~p~--~~~~~~~~al~~G~~ 132 (163)
..++ ...+.+..+.+.|+.
T Consensus 216 p~~~~~~r~~il~~l~~~gv~ 236 (476)
T PRK15204 216 EYTELEKTHFWLRELSKHHCR 236 (476)
T ss_pred CcCcHHHHHHHHHHHhhcCCe
Confidence 2222 334677788888874
No 364
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=94.52 E-value=0.38 Score=42.59 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=56.4
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhccCCCCCCcceeCC--HHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~--~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~--l~ell~~~~~~~~~DVV 110 (163)
+-|+.|+| .|..|+.+++.+.+++ +.+++|.+|.+.. ..+.. -.++|++.+ +.+.+. +.++|.|
T Consensus 125 ~rrvlIiG-ag~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~~-----i~g~pVlg~~~l~~~i~----~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIG-AGQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGRL-----LTGLPVVGADDALRLYA----RTRYAYV 192 (456)
T ss_pred CceEEEEe-CCHHHHHHHHHHhhCccCCcEEEEEEeCCcc--ccccc-----cCCCcccChhHHHHHHH----hCCCCEE
Confidence 46799999 5999999999987654 6899999995321 01110 235666654 333343 2678866
Q ss_pred EEccCc----hhHHHHHHHHHHcCC-cEEE
Q 031216 111 IDFTDA----STVYDNVKQATAFGM-RSVV 135 (163)
Q Consensus 111 IDfT~p----~~~~~~~~~al~~G~-~vVi 135 (163)
+ .+.| +...+.+..+.+.|+ ++.+
T Consensus 193 i-IAip~~~~~~~~~ll~~l~~~~v~~V~~ 221 (456)
T TIGR03022 193 I-VAMPGTQAEDMARLVRKLGALHFRNVLI 221 (456)
T ss_pred E-EecCCccHHHHHHHHHHHHhCCCeEEEE
Confidence 6 3433 334566777877888 5544
No 365
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.52 E-value=0.43 Score=42.31 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=51.6
Q ss_pred CeeEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVID 112 (163)
..||.|+| .|+.|.. +++.+. ..|.++. +.|.... ....++. ..++.++. ...+.+ ..+|+||
T Consensus 7 ~~~v~viG-~G~sG~s~~a~~L~-~~G~~V~-~~D~~~~-~~~~~l~----~~gi~~~~~~~~~~~------~~~d~vv- 71 (461)
T PRK00421 7 IKRIHFVG-IGGIGMSGLAEVLL-NLGYKVS-GSDLKES-AVTQRLL----ELGAIIFIGHDAENI------KDADVVV- 71 (461)
T ss_pred CCEEEEEE-EchhhHHHHHHHHH-hCCCeEE-EECCCCC-hHHHHHH----HCCCEEeCCCCHHHC------CCCCEEE-
Confidence 35899999 5999999 677765 6799976 4674321 1222321 34665542 222333 3789877
Q ss_pred cc--CchhHHHHHHHHHHcCCcEEE
Q 031216 113 FT--DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT--~p~~~~~~~~~al~~G~~vVi 135 (163)
.| .|.. .+.++.|.++|++++.
T Consensus 72 ~spgi~~~-~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 72 YSSAIPDD-NPELVAARELGIPVVR 95 (461)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEe
Confidence 44 2332 3456677788888754
No 366
>PLN02928 oxidoreductase family protein
Probab=94.50 E-value=0.23 Score=42.91 Aligned_cols=69 Identities=13% Similarity=0.035 Sum_probs=43.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCC-------CCCCcceeCCHHHHHhcccccCCc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSISQSKAR 107 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~-------~~~gi~v~~~l~ell~~~~~~~~~ 107 (163)
-.+|+|+| +|+||+.+++.+. .=|+++.+ +|+... .......+.+ ..... -+.++++++. ..
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~-afG~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~------~a 227 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLR-PFGVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG------EA 227 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCCC-hhhhhhhccccccccccccccC-cccCHHHHHh------hC
Confidence 46899999 7999999999987 56899885 464311 0000000000 00011 3579999995 89
Q ss_pred cEEEEcc
Q 031216 108 AVVIDFT 114 (163)
Q Consensus 108 DVVIDfT 114 (163)
|+|+...
T Consensus 228 DiVvl~l 234 (347)
T PLN02928 228 DIVVLCC 234 (347)
T ss_pred CEEEECC
Confidence 9999654
No 367
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.49 E-value=0.051 Score=42.56 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=53.9
Q ss_pred ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCC
Q 031216 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA 106 (163)
Q Consensus 27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~ 106 (163)
+.+|-.-.-.++.|+| +|+.|+.+++.+.. -+.++. +++.++. +.+... -.|..+. ++++++. .
T Consensus 15 r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~-~Ga~V~-V~e~DPi-~alqA~-----~dGf~v~-~~~~a~~------~ 78 (162)
T PF00670_consen 15 RATNLMLAGKRVVVIG-YGKVGKGIARALRG-LGARVT-VTEIDPI-RALQAA-----MDGFEVM-TLEEALR------D 78 (162)
T ss_dssp HHH-S--TTSEEEEE---SHHHHHHHHHHHH-TT-EEE-EE-SSHH-HHHHHH-----HTT-EEE--HHHHTT------T
T ss_pred hcCceeeCCCEEEEeC-CCcccHHHHHHHhh-CCCEEE-EEECChH-HHHHhh-----hcCcEec-CHHHHHh------h
Confidence 4455444456899999 89999999999875 466664 5664321 111111 1244443 7888874 8
Q ss_pred ccEEEEccCchhH--HHHHHHHHHcCCcEEEeCCC-CC-HHHHHHHHHH
Q 031216 107 RAVVIDFTDASTV--YDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAF 151 (163)
Q Consensus 107 ~DVVIDfT~p~~~--~~~~~~al~~G~~vVigttg-~~-~e~~~~L~~~ 151 (163)
.|++|-.|-+... .++.. .++.|.- +...| ++ +-+.+.|.+.
T Consensus 79 adi~vtaTG~~~vi~~e~~~-~mkdgai--l~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 79 ADIFVTATGNKDVITGEHFR-QMKDGAI--LANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp -SEEEE-SSSSSSB-HHHHH-HS-TTEE--EEESSSSTTSBTHHHHHTC
T ss_pred CCEEEECCCCccccCHHHHH-HhcCCeE--EeccCcCceeEeecccccc
Confidence 9998866744443 34444 3555543 33333 33 2344556555
No 368
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.48 E-value=0.059 Score=47.84 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=42.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.||.|+| +|.||+.+++.+.. .+..-+-++.++. .++..+........+..++++.+.+. ++|+||.+|
T Consensus 182 kkvlviG-aG~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~~~~~~~~~~~~~l~~~l~------~aDiVI~aT 250 (414)
T PRK13940 182 KNVLIIG-AGQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITSAFRNASAHYLSELPQLIK------KADIIIAAV 250 (414)
T ss_pred CEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHHHhcCCeEecHHHHHHHhc------cCCEEEECc
Confidence 6899999 59999999999975 4554444666543 22233322100011222456666664 899999877
No 369
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.45 E-value=0.35 Score=41.14 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-.+|||+| +|++|+.+++.+. -=|+++.+ +|+.. ... ..++. +.++++++. ..|+|+...
T Consensus 145 gktvGIiG-~G~IG~~vA~~~~-~fgm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh~ 204 (311)
T PRK08410 145 GKKWGIIG-LGTIGKRVAKIAQ-AFGAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIHA 204 (311)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-hcCCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence 47899999 7999999999986 45889875 56431 110 11222 568999995 899988654
No 370
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.41 E-value=0.48 Score=38.51 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=45.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhccCCCCCC-cceeCCHHHHHhccc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSIS 102 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~e--Lvgvid~~~---~g~~------~~~l~g~~~~~g-i~v~~~l~ell~~~~ 102 (163)
..||.|+|+ |.+|+.+++.+.. .++. =+.++|++. ..+. ..++.. ..+ -....++.+.+.
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l~--- 96 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEALK--- 96 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHHh---
Confidence 368999995 9999999999875 4776 556788651 1110 011211 110 011136766664
Q ss_pred ccCCccEEEEccCchhH
Q 031216 103 QSKARAVVIDFTDASTV 119 (163)
Q Consensus 103 ~~~~~DVVIDfT~p~~~ 119 (163)
++|+||..|.+...
T Consensus 97 ---~~dvlIgaT~~G~~ 110 (226)
T cd05311 97 ---GADVFIGVSRPGVV 110 (226)
T ss_pred ---cCCEEEeCCCCCCC
Confidence 79999988864443
No 371
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.41 E-value=0.35 Score=40.72 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~-~~eLvgv 66 (163)
.+|.|+|++|.+|+.+++.+.+.. +.+++..
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~ 36 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY 36 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999998763 3676644
No 372
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.40 E-value=0.42 Score=41.85 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=50.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
.||.|+| .|.+|..+++.+. ..+.++. ++|............+ . ....+.+... .++|++|-...
T Consensus 4 ~~i~iiG-lG~~G~slA~~l~-~~G~~V~-g~D~~~~~~~~~~~~~---~---~~~~~~~~~~------~~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLG-LGVTGKSIARFLA-QKGVYVI-GVDKSLEALQSCPYIH---E---RYLENAEEFP------EQVDLVVRSPG 68 (418)
T ss_pred CeEEEEE-ECHHHHHHHHHHH-HCCCEEE-EEeCCccccchhHHHh---h---hhcCCcHHHh------cCCCEEEECCC
Confidence 4799999 6999999888876 5677765 4674321100000000 0 0112333333 26898883332
Q ss_pred chhHHHHHHHHHHcCCcEEE
Q 031216 116 ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 116 p~~~~~~~~~al~~G~~vVi 135 (163)
.....+.+..|+++|+++|.
T Consensus 69 i~~~~~~l~~A~~~g~~vv~ 88 (418)
T PRK00683 69 IKKEHPWVQAAIASHIPVVT 88 (418)
T ss_pred CCCCcHHHHHHHHCCCcEEE
Confidence 33447889999999999765
No 373
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.39 E-value=0.2 Score=41.60 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~ 36 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLF-RGYTINATV 36 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 5899999999999999999874 588887654
No 374
>PLN00106 malate dehydrogenase
Probab=94.39 E-value=0.31 Score=41.92 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=31.9
Q ss_pred eccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 26 ~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
.|-+.....+.||+|+|++|++|..++-.+...+-..-.-++|.
T Consensus 9 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 9 ACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred ccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 35555556667999999779999999998875554433336774
No 375
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=94.34 E-value=0.12 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=28.3
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
..+|.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~-~G~~V~~~~r 38 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLS-KGYEVHGIIR 38 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHH-CCCEEEEEec
Confidence 46899999999999999999985 5899887654
No 376
>PRK06091 membrane protein FdrA; Validated
Probab=94.30 E-value=0.57 Score=43.26 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=61.0
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
+=+|++++.||.++..+...+. ..++-+.-++..- |+|+.+-.+ ++ ++.++++.+.+++..++|+-+.
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~-~~GiG~S~~Vs~G--n~Dls~~~g-----gi----~~~D~L~~L~~DP~TkvIvly~ 260 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIA-LAGEGITHAIGLG--GRDLSAEVG-----GI----SALTALEMLSADEKSEVIAFVS 260 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHH-HcCCCeEEEEECC--CCccccccC-----CC----CHHHHHHHHhhCCCCcEEEEEE
Confidence 5679999999999999888776 5677666666531 122211110 11 3344444444468888888777
Q ss_pred Cc--hhH-HHHHHHHHHcCCcEEEeCCCCCH
Q 031216 115 DA--STV-YDNVKQATAFGMRSVVYVPHIQL 142 (163)
Q Consensus 115 ~p--~~~-~~~~~~al~~G~~vVigttg~~~ 142 (163)
-| +.. .+.+..+.+.+||||+-+.|-++
T Consensus 261 kppaE~v~~~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 261 KPPAEAVRLKIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred ecCchHHHHHHHHHHhhCCCCEEEEEecCCc
Confidence 44 344 34555556679999988877654
No 377
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.28 E-value=0.14 Score=43.27 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=26.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 k~ilItGatG~IG~~l~~~L~~-~G~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLE-LGAEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHH-CCCEEEEEe
Confidence 6899999999999999999984 578887653
No 378
>PLN00203 glutamyl-tRNA reductase
Probab=94.28 E-value=0.14 Score=46.83 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=48.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCc--ceeCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi--~v~~~l~ell~~~~~~~~~DVVID 112 (163)
..||+|+|+ |.||+.+++.+.. .+++=+-+++++. .++..+........+ ..++++.+++. ++|+||-
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs 335 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT 335 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence 468999995 9999999999875 5664444566542 222333210001111 12356666664 8999997
Q ss_pred cc---CchhHHHHHHHHH
Q 031216 113 FT---DASTVYDNVKQAT 127 (163)
Q Consensus 113 fT---~p~~~~~~~~~al 127 (163)
+| .|--..+++..+.
T Consensus 336 AT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 336 STSSETPLFLKEHVEALP 353 (519)
T ss_pred ccCCCCCeeCHHHHHHhh
Confidence 76 2322356666554
No 379
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.27 E-value=0.39 Score=42.45 Aligned_cols=62 Identities=19% Similarity=0.090 Sum_probs=43.3
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
.-.+|||+| +|++|+.+++.+. .=|+++.+ +|+... . . ..++....++++++. ..|+|+..
T Consensus 150 ~gktvGIiG-~G~IG~~vA~~~~-~fGm~V~~-~d~~~~-~---~------~~~~~~~~~l~ell~------~sDiVslh 210 (409)
T PRK11790 150 RGKTLGIVG-YGHIGTQLSVLAE-SLGMRVYF-YDIEDK-L---P------LGNARQVGSLEELLA------QSDVVSLH 210 (409)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCCcc-c---c------cCCceecCCHHHHHh------hCCEEEEc
Confidence 347899999 7999999999987 45899875 554211 0 0 112223468999996 89998855
Q ss_pred c
Q 031216 114 T 114 (163)
Q Consensus 114 T 114 (163)
.
T Consensus 211 ~ 211 (409)
T PRK11790 211 V 211 (409)
T ss_pred C
Confidence 4
No 380
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.26 E-value=1 Score=35.53 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=26.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r 37 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAR-EGARVVVADR 37 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHH-CCCeEEEecC
Confidence 4799999999999999999885 5788776543
No 381
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=94.21 E-value=0.14 Score=39.71 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=44.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
.||+++|| |.=|..++..+--.++ .|..++|... ...+.++. ..++||. +++++.+ ..+|.++.+..
T Consensus 69 k~I~~yGA-~~kg~tlln~~g~~~~-~I~~vvD~np--~K~G~~~P---Gt~ipI~-~p~~l~~-----~~pd~vivlaw 135 (160)
T PF08484_consen 69 KRIAGYGA-GAKGNTLLNYFGLDND-LIDYVVDDNP--LKQGKYLP---GTHIPIV-SPEELKE-----RKPDYVIVLAW 135 (160)
T ss_dssp --EEEE----SHHHHHHHHHT--TT-TS--EEES-G--GGTTEE-T---TT--EEE-EGGG--S-----S--SEEEES-G
T ss_pred CEEEEECc-chHHHHHHHHhCCCcc-eeEEEEeCCh--hhcCcccC---CCCCeEC-CHHHHhh-----CCCCEEEEcCh
Confidence 67999997 8888888888754344 3777889543 23344442 3467876 6777776 58999886652
Q ss_pred --chhHHHHHHHHHHcCCcEEE
Q 031216 116 --ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 116 --p~~~~~~~~~al~~G~~vVi 135 (163)
.+...+......+.|-.+|+
T Consensus 136 ~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 136 NYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp GGHHHHHHHTHHHHHTT-EEEE
T ss_pred hhHHHHHHHHHHHHhcCCEEEE
Confidence 23334555667788888776
No 382
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.20 E-value=0.66 Score=40.81 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=51.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.||.|+| .|++|...++.+. ..+.++++ .|....-.....+... ..|+.++ ....+.+. .++|+|| .|
T Consensus 6 ~~~~v~G-~g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~-----~~~d~vv-~s 74 (445)
T PRK04308 6 KKILVAG-LGGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGKM--FDGLVFYTGRLKDALD-----NGFDILA-LS 74 (445)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHH-----hCCCEEE-EC
Confidence 5899999 5999999988876 66888775 5642211111122100 1355554 22222222 3789888 54
Q ss_pred --CchhHHHHHHHHHHcCCcEEE
Q 031216 115 --DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 115 --~p~~~~~~~~~al~~G~~vVi 135 (163)
.|.. .+.++.|.++|++++.
T Consensus 75 pgi~~~-~p~~~~a~~~~i~v~~ 96 (445)
T PRK04308 75 PGISER-QPDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCCCC-CHHHHHHHHcCCcEEE
Confidence 2333 3567777888888764
No 383
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.19 E-value=0.41 Score=45.16 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
++....||+|+|+ |.||+.++..+....|++++ ++|.
T Consensus 305 ~~~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~-l~d~ 341 (708)
T PRK11154 305 KPRPVNKVGVLGG-GLMGGGIAYVTATKAGLPVR-IKDI 341 (708)
T ss_pred CCCcccEEEEECC-chhhHHHHHHHHHHcCCeEE-EEeC
Confidence 3344568999995 99999999987767889888 4674
No 384
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.18 E-value=0.67 Score=40.63 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=51.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-C-HHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~-l~ell~~~~~~~~~DVVIDf 113 (163)
.||.|+| .|+.|...++.+. ..|.++.+ .|....-.....+ +.++.++. . ..+.+ .+.|+|| .
T Consensus 7 ~~i~v~G-~G~sG~s~~~~l~-~~G~~v~~-~D~~~~~~~~~~l-----~~g~~~~~~~~~~~~~------~~~d~vv-~ 71 (438)
T PRK03806 7 KKVVIIG-LGLTGLSCVDFFL-ARGVTPRV-IDTRITPPGLDKL-----PENVERHTGSLNDEWL------LAADLIV-A 71 (438)
T ss_pred CEEEEEe-eCHHHHHHHHHHH-HCCCeEEE-EcCCCCchhHHHH-----hcCCEEEeCCCCHHHh------cCCCEEE-E
Confidence 4799999 6999999998655 67888765 7743210001111 12555542 2 22233 3688877 5
Q ss_pred cC--chhHHHHHHHHHHcCCcEEE
Q 031216 114 TD--ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T~--p~~~~~~~~~al~~G~~vVi 135 (163)
++ |.. .+.+..|.+.|++++.
T Consensus 72 spgi~~~-~~~~~~a~~~g~~v~~ 94 (438)
T PRK03806 72 SPGIALA-HPSLSAAADAGIEIVG 94 (438)
T ss_pred CCCCCCC-CHHHHHHHHCCCeEEE
Confidence 52 443 5778888999999655
No 385
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.34 Score=43.20 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=31.0
Q ss_pred CCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 30 ~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+++-++..|.|+||+|+.|+.+++.+.+ .++.+-+++.+
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VRd 112 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLK-RGFSVRALVRD 112 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHH-CCCeeeeeccC
Confidence 3444678999999999999999999985 56777766654
No 386
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=94.17 E-value=0.32 Score=35.11 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=46.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|||.|+| +|.=-.+++..+.+++.++=+.+.- .+.|.. .+ ...++ -.+|++++.+ .+.+.++|.|| ..
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aP-GN~G~~--~~-----~~~~~~~~~d~~~l~~-~a~~~~idlvv-vG 69 (100)
T PF02844_consen 1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAP-GNPGTA--EL-----GKNVPIDITDPEELAD-FAKENKIDLVV-VG 69 (100)
T ss_dssp EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE---TTGG--GT-----SEEE-S-TT-HHHHHH-HHHHTTESEEE-ES
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeC-CCHHHH--hh-----ceecCCCCCCHHHHHH-HHHHcCCCEEE-EC
Confidence 7999999 7844445666677777776554433 122221 11 01111 1356666543 23357899877 44
Q ss_pred CchhH-HHHHHHHHHcCCcE
Q 031216 115 DASTV-YDNVKQATAFGMRS 133 (163)
Q Consensus 115 ~p~~~-~~~~~~al~~G~~v 133 (163)
+.... .-.+....+.|+++
T Consensus 70 PE~pL~~Gl~D~l~~~gi~v 89 (100)
T PF02844_consen 70 PEAPLVAGLADALRAAGIPV 89 (100)
T ss_dssp SHHHHHTTHHHHHHHTT-CE
T ss_pred ChHHHHHHHHHHHHHCCCcE
Confidence 33333 35667777889986
No 387
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.16 E-value=0.4 Score=38.30 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
..||+|+| .|.||..++..+. ..|+.=+-++|.+
T Consensus 21 ~~~V~IvG-~GglGs~ia~~La-~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICG-LGGLGSNVAINLA-RAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEEC-cCHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 46899999 5999999999987 5688544577843
No 388
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=94.12 E-value=0.27 Score=41.44 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=78.4
Q ss_pred cceeeeccccccc-ccccc-eeeeccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC
Q 031216 5 GCQFHCRMHHISQ-NVKAK-RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM 82 (163)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~ 82 (163)
||-.--|..-||. -|.+. ||-+-|- +++.-||.|.|+.|..|..+++.+..+=|-+-|-..|... +...++..
T Consensus 14 g~~~~~R~~~Isp~~v~~~A~FH~~s~--~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---Pp~~V~~~ 88 (366)
T KOG2774|consen 14 GCWLPVRRNGISPLPVDPLARFHTISQ--TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---PPANVTDV 88 (366)
T ss_pred cccccccccCCCcccCCcccccccccc--cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---Cchhhccc
Confidence 5555555555543 33332 3544433 6677899999999999999999999888888887777321 11122110
Q ss_pred C--CCCCcceeCCHHHHHhcccccCCccEEEEccC-----------------chhHHHHHHHHHHcCCcEEEeCC
Q 031216 83 E--QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD-----------------ASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 83 ~--~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~-----------------p~~~~~~~~~al~~G~~vVigtt 138 (163)
. --.+|.=|.+++|+... ..+|-+|.||. -+.+...+..|.+++..+.+-.|
T Consensus 89 GPyIy~DILD~K~L~eIVVn----~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPST 159 (366)
T KOG2774|consen 89 GPYIYLDILDQKSLEEIVVN----KRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPST 159 (366)
T ss_pred CCchhhhhhccccHHHhhcc----cccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcCeeEeeccc
Confidence 0 01123335677887763 78999998861 12345667778888888776444
No 389
>PRK06988 putative formyltransferase; Provisional
Probab=94.11 E-value=0.15 Score=43.56 Aligned_cols=72 Identities=17% Similarity=0.322 Sum_probs=47.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCc----chhhhccCCCCCCcceeC--CH-----HHHHhcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGE----DIGMVCDMEQPLEIPVMS--DL-----TMVLGSI 101 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--~~g~----~~~~l~g~~~~~gi~v~~--~l-----~ell~~~ 101 (163)
|+||++.| ++.+|...++.+.+ .+.++++++... ..+. ++.+++ ...+++++. ++ .+.+.
T Consensus 2 ~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~-- 74 (312)
T PRK06988 2 KPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVA-- 74 (312)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHH--
Confidence 68999999 89999999999875 578999988742 1111 223333 255777753 22 22333
Q ss_pred cccCCccEEEEccC
Q 031216 102 SQSKARAVVIDFTD 115 (163)
Q Consensus 102 ~~~~~~DVVIDfT~ 115 (163)
+..+|++|-+..
T Consensus 75 --~~~~Dliv~~~~ 86 (312)
T PRK06988 75 --AAAPDFIFSFYY 86 (312)
T ss_pred --hcCCCEEEEehh
Confidence 268998876653
No 390
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.3 Score=39.74 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
+.++.|+|++|.+|+.+++.+.+ .|.+++++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGTV 35 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh-CcCEEEEEe
Confidence 35799999999999999999874 588977654
No 391
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.09 E-value=0.32 Score=38.92 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=26.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
|.++.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAA-EGWRVGAY 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH-CCCeEEEE
Confidence 45799999999999999999874 57887754
No 392
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.08 E-value=0.36 Score=38.75 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=26.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+++.|+|++|.+|+.+++.+.+ .+.+++.. ++
T Consensus 1 m~vlItGas~gIG~aia~~l~~-~G~~V~~~-~r 32 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLK-KGARVVIS-SR 32 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHH-cCCEEEEE-eC
Confidence 4899999999999999999874 57886644 43
No 393
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.06 E-value=0.9 Score=36.17 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=25.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
++|.|+|++|++|+.+++.+.+ .|.+++.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~~ 30 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQ-QGHKVIAT 30 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence 4799999999999999999984 58887754
No 394
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.03 E-value=0.37 Score=45.82 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
++...-||+|+|+ |.||..++..+. ..|++++ ++|.
T Consensus 331 ~~~~i~~v~ViGa-G~MG~gIA~~~a-~~G~~V~-l~d~ 366 (737)
T TIGR02441 331 PQRPVKTLAVLGA-GLMGAGIAQVSV-DKGLKTV-LKDA 366 (737)
T ss_pred CCCcccEEEEECC-CHhHHHHHHHHH-hCCCcEE-EecC
Confidence 4455568999995 999999998877 5599988 5774
No 395
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.01 E-value=0.53 Score=40.45 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
||+|+| .|..|..+++.+. ..|+.=.-++|.
T Consensus 1 kVLIvG-aGGLGs~vA~~La-~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLG-AGTLGCNVARNLL-GWGVRHITFVDS 31 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHH-HcCCCeEEEECC
Confidence 699999 5999999999997 567877777883
No 396
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.00 E-value=0.25 Score=45.71 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCH--HHHHhcccccCCccEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI 111 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l--~ell~~~~~~~~~DVVI 111 (163)
.-+|.|+| .|++|+.+++.+. ..+.+++ ++|++. +.+..+- +.|.++ |.|. .+.+.+ +.-.++|++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~-agi~~A~~vv 469 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLELLRA-AGAEKAEAIV 469 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence 35899999 6999999999987 5677876 567542 1222221 234443 3332 122221 0124788877
Q ss_pred EccCc-hhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031216 112 DFTDA-STVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF 151 (163)
Q Consensus 112 DfT~p-~~~~~~~~~al~~G--~~vVigttg~~~e~~~~L~~~ 151 (163)
-.+.- +.....+..+.+.. .+++. ...++++.++|.++
T Consensus 470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia--Ra~~~~~~~~L~~~ 510 (601)
T PRK03659 470 ITCNEPEDTMKIVELCQQHFPHLHILA--RARGRVEAHELLQA 510 (601)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHhC
Confidence 44432 22234445555443 34433 34556666666654
No 397
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.98 E-value=0.13 Score=43.63 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=31.1
Q ss_pred eEE-EEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcc
Q 031216 37 KVI-INGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGED 75 (163)
Q Consensus 37 rV~-VvGa~G~mG~~i~~~i~~~~~~eLvgv-id~~~~g~~ 75 (163)
|++ |+|++|..|++.+..+..+|.++|.-. ...+..|++
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ 45 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR 45 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc
Confidence 455 999999999999999999999998866 333445554
No 398
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.98 E-value=0.24 Score=42.49 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=41.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecC-----CCC--cchhhhccCCCCCCcceeCCHHHHHhc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH-----SVG--EDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~~-----~~g--~~~~~l~g~~~~~gi~v~~~l~ell~~ 100 (163)
+|.||+|+|++|++|..++-.+....=+ +|+ ++|.. ..| .|+.+..... ..++.++++..+.+
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di~~~~~~a~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~-- 76 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQ-LLELPQALKALEGVAMELEDCAFPL-LAEIVITDDPNVAF-- 76 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEE-EEecCCcccccceeehhhhhccccc-cCceEEecCcHHHh--
Confidence 4689999997799999988877632222 554 77852 122 1222211000 11344554444555
Q ss_pred ccccCCccEEEEc
Q 031216 101 ISQSKARAVVIDF 113 (163)
Q Consensus 101 ~~~~~~~DVVIDf 113 (163)
.+.|+||..
T Consensus 77 ----~daDivvit 85 (322)
T cd01338 77 ----KDADWALLV 85 (322)
T ss_pred ----CCCCEEEEe
Confidence 489998854
No 399
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.96 E-value=0.44 Score=33.68 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=51.5
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHH--HHHhcccccCCccEEEEcc
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLT--MVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~--ell~~~~~~~~~DVVIDfT 114 (163)
|.|+| .|++|+.+++.+.+ .+.+++. +|.+. ....++. ..++.+ +.|.. +.+.+ ..-.++|.++-.+
T Consensus 1 vvI~G-~g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~-a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLER-AGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHH-TTGGCESEEEEES
T ss_pred eEEEc-CCHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhh-cCccccCEEEEcc
Confidence 67999 69999999999987 6667774 55432 1112221 122322 33221 11211 0114788877555
Q ss_pred CchhH-HHHHHHHHH-cC-CcEEEeCCCCCHHHHHHHHH
Q 031216 115 DASTV-YDNVKQATA-FG-MRSVVYVPHIQLETVSALSA 150 (163)
Q Consensus 115 ~p~~~-~~~~~~al~-~G-~~vVigttg~~~e~~~~L~~ 150 (163)
..+.. ...+..+.+ .+ ++++. ...+++..+.|.+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~--~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIA--RVNDPENAELLRQ 107 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEE--EESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEE--EECCHHHHHHHHH
Confidence 43333 344455544 33 45554 2345666566655
No 400
>PLN02686 cinnamoyl-CoA reductase
Probab=93.95 E-value=0.1 Score=44.93 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 33 ~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
..+.+|.|.|++|.+|+.+++.+. ..+.+++++.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~-~~G~~V~~~~r~ 86 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLL-RHGYSVRIAVDT 86 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 456789999999999999999987 468998876663
No 401
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.95 E-value=0.59 Score=44.28 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
++...-||+|+|+ |-||..++..+. ..|++++ ++|.
T Consensus 309 ~~~~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d~ 344 (714)
T TIGR02437 309 IAKDVKQAAVLGA-GIMGGGIAYQSA-SKGTPIV-MKDI 344 (714)
T ss_pred CccccceEEEECC-chHHHHHHHHHH-hCCCeEE-EEeC
Confidence 3445568999995 999999999887 5699888 5674
No 402
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.89 E-value=0.54 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+|.|+|++|.+|+.+++.+.+. +.++.++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 4999999999999999999855 899997665
No 403
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.88 E-value=0.53 Score=44.28 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=59.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------C---Ccc----hhhhc-cCCCCC----
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------V---GED----IGMVC-DMEQPL---- 86 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~----------------~---g~~----~~~l~-g~~~~~---- 86 (163)
..||+|+|| |..|..+++.+. .-|+.=..++|... . |+. +.+.+ .+....
T Consensus 338 ~~kVLIvGa-GGLGs~VA~~La-~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~ 415 (664)
T TIGR01381 338 QLKVLLLGA-GTLGCNVARCLI-GWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG 415 (664)
T ss_pred cCeEEEECC-cHHHHHHHHHHH-HcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence 379999995 999999999987 56777777888320 0 111 00000 000000
Q ss_pred ---Ccc-----eeC-----------CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEeCCCC
Q 031216 87 ---EIP-----VMS-----------DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI 140 (163)
Q Consensus 87 ---gi~-----v~~-----------~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigttg~ 140 (163)
.+| +.. ++++++. ..|+|+|++..-.. .-.-..|.++|+++|.+.-|+
T Consensus 416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGf 483 (664)
T TIGR01381 416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGF 483 (664)
T ss_pred eeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 010 111 2445554 89999999954444 445578899999999775555
No 404
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.25 Score=42.97 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=59.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----Cc-chhhhccCC-----------------CCCC--ccee-
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----GE-DIGMVCDME-----------------QPLE--IPVM- 91 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g~-~~~~l~g~~-----------------~~~g--i~v~- 91 (163)
|.|+|+ |..|+-++.++. ..|++=.-++|-+.. .+ ..+.+.+.. ...+ ...|
T Consensus 77 VVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~ 154 (430)
T KOG2018|consen 77 VVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWT 154 (430)
T ss_pred EEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhcC
Confidence 899995 999999999887 578888888883211 00 011111000 0000 0111
Q ss_pred -CCHHHHHhcccccCCccEEEEccC-chhHHHHHHHHHHcCCcEEEeC
Q 031216 92 -SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (163)
Q Consensus 92 -~~l~ell~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigt 137 (163)
++-++++. .+||-|+|+-. -+.-.+.+.+|..+|++|+..|
T Consensus 155 ~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~ 197 (430)
T KOG2018|consen 155 SSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST 197 (430)
T ss_pred CCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc
Confidence 45566665 47999999874 4555899999999999998644
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.2 Score=40.47 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=27.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.+|.|.|++|++|+.+++.+.+..+.+++....
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 579999999999999999988766688876543
No 406
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.80 E-value=0.54 Score=43.75 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=57.8
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-C---CHHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S---DLTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~---~l~ell~~~~~~~~~DVV 110 (163)
.-+|.|+| +|++|+.+++.+. ..+.+++ ++|.+. +++..+- +.|.+++ . +.+ .+.+ +.-.++|++
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLL-SSGVKMT-VLDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL 468 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence 36899999 6999999999987 4677877 457542 1222221 2344443 2 333 2221 012478887
Q ss_pred EEccC-chhHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHH
Q 031216 111 IDFTD-ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAF 151 (163)
Q Consensus 111 IDfT~-p~~~~~~~~~al~~G--~~vVigttg~~~e~~~~L~~~ 151 (163)
|-.+. ++.....+..+.+.. .+++. -..+.+..++|.++
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~ 510 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA 510 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC
Confidence 75553 333344445555543 34443 23556666666665
No 407
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=93.76 E-value=0.2 Score=39.42 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc-CCcEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG 65 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~-~~~eLvg 65 (163)
++|.|+|++|.+|+.+++.+.+. .+..++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999998865 3566554
No 408
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.33 Score=38.47 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=25.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
+|+.|.|++|++|+.+++.+. ..+.+++.+
T Consensus 1 m~vlItGas~giG~~ia~~l~-~~g~~v~~~ 30 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFR-NDGHKVTLV 30 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHH-HCCCEEEEE
Confidence 489999999999999999997 467888765
No 409
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.71 E-value=1 Score=36.55 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=51.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee----CCHHHHHhcccccCCccEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~----~~l~ell~~~~~~~~~DVVI 111 (163)
++++|+| .|++|+.+++.+. ..+.+++.+-+.. ....++... ..+..++ ++.+.+.+. .-.++|+++
T Consensus 1 m~iiIiG-~G~vG~~va~~L~-~~g~~Vv~Id~d~---~~~~~~~~~--~~~~~~v~gd~t~~~~L~~a--gi~~aD~vv 71 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELS-EEGHNVVLIDRDE---ERVEEFLAD--ELDTHVVIGDATDEDVLEEA--GIDDADAVV 71 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHH-hCCCceEEEEcCH---HHHHHHhhh--hcceEEEEecCCCHHHHHhc--CCCcCCEEE
Confidence 5899999 5999999999987 5677877654432 112221110 1222222 233222211 014789988
Q ss_pred EccCchhHHH-HHHHHHH-cCCcEEEeCC
Q 031216 112 DFTDASTVYD-NVKQATA-FGMRSVVYVP 138 (163)
Q Consensus 112 DfT~p~~~~~-~~~~al~-~G~~vVigtt 138 (163)
=.|..+.... ....+++ .|++-++.+.
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 5554434422 2233333 7888887664
No 410
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.70 E-value=0.7 Score=39.35 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=59.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC------CCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~------~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV 109 (163)
+||.|+| .|.||..+.-.+.+.. -.+..+..++ ..|-.+.+..+.. ......+.+.+. + .++|+
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~-~~~~~~~~~~~~-~------~~~Dl 70 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNF-TTPVVAATDAEA-L------GPADL 70 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCcc-ccccccccChhh-c------CCCCE
Confidence 5899999 5999999999998666 4444444432 1232222211100 001111222222 2 48999
Q ss_pred EEEccCchhH---HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeE
Q 031216 110 VIDFTDASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMV 158 (163)
Q Consensus 110 VIDfT~p~~~---~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv 158 (163)
||.++-.... .+.+...+.....|++---|+.-++ .|.+...+..|+
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~~il 120 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKETVL 120 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcceEE
Confidence 9977644333 3444444444444555344775443 677776665333
No 411
>PLN02306 hydroxypyruvate reductase
Probab=93.65 E-value=0.53 Score=41.45 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=43.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hccC--C----CCCCcceeCCHHHHHhcccccC
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDM--E----QPLEIPVMSDLTMVLGSISQSK 105 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~---l~g~--~----~~~gi~v~~~l~ell~~~~~~~ 105 (163)
-.+|||+| +|++|+.+++.+...=|+++.+ +|+... .+... ..+. . .+.++..+.++++++.
T Consensus 165 gktvGIiG-~G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------ 235 (386)
T PLN02306 165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------ 235 (386)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------
Confidence 47899999 7999999999975344888874 564321 01000 0100 0 0011122468999996
Q ss_pred CccEEEEcc
Q 031216 106 ARAVVIDFT 114 (163)
Q Consensus 106 ~~DVVIDfT 114 (163)
+.|+|+...
T Consensus 236 ~sDiV~lh~ 244 (386)
T PLN02306 236 EADVISLHP 244 (386)
T ss_pred hCCEEEEeC
Confidence 899988654
No 412
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.97 Score=36.45 Aligned_cols=30 Identities=33% Similarity=0.355 Sum_probs=25.3
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
.++.|+|++|.+|+.+++.+.+ .+..++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~~ 35 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA-LGARVAIG 35 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence 5799999999999999999874 58886643
No 413
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.59 E-value=0.44 Score=41.12 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=55.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
..+|+|+| +|.=|+.++..+. .+|++++-........++-++ ..|..|+ +++|+.. ..|+|...+
T Consensus 18 gK~iaIIG-YGsQG~ahalNLR-DSGlnViiGlr~g~~s~~kA~------~dGf~V~-~v~ea~k------~ADvim~L~ 82 (338)
T COG0059 18 GKKVAIIG-YGSQGHAQALNLR-DSGLNVIIGLRKGSSSWKKAK------EDGFKVY-TVEEAAK------RADVVMILL 82 (338)
T ss_pred CCeEEEEe-cChHHHHHHhhhh-hcCCcEEEEecCCchhHHHHH------hcCCEee-cHHHHhh------cCCEEEEeC
Confidence 46899999 7999999999886 689998766653221122222 3344444 7888874 899988665
Q ss_pred Cchh-----HHHHHHHHHHcCCcEE
Q 031216 115 DAST-----VYDNVKQATAFGMRSV 134 (163)
Q Consensus 115 ~p~~-----~~~~~~~al~~G~~vV 134 (163)
|+. ..+.+...++.|..+.
T Consensus 83 -PDe~q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 83 -PDEQQKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred -chhhHHHHHHHHhhhhhcCCceEE
Confidence 433 2346666777777543
No 414
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=93.56 E-value=0.19 Score=43.18 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=26.0
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
.+|.||+.++||+.++.+.+ .|++++ ++.|+
T Consensus 52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt 82 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRT 82 (312)
T ss_pred EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCC
Confidence 67899999999999999985 899966 55543
No 415
>PRK07589 ornithine cyclodeaminase; Validated
Probab=93.56 E-value=0.18 Score=43.87 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=59.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhcc-CCC-CCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g-~~~-~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
-+++|+| +|..++.+++.+...-.++=+-+.++... ....+.. +.. ...+.+.+++++++. ..|+|+=+
T Consensus 130 ~~l~iiG-aG~QA~~~l~a~~~vr~i~~V~v~~r~~~--~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta 200 (346)
T PRK07589 130 RTMALIG-NGAQSEFQALAFKALLGIEEIRLYDIDPA--ATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV 200 (346)
T ss_pred cEEEEEC-CcHHHHHHHHHHHHhCCceEEEEEeCCHH--HHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence 6799999 69999999999888777877778876532 2222211 100 123555789999985 89999955
Q ss_pred cCchhHHHHH-HHHHHcCCcEE-Ee
Q 031216 114 TDASTVYDNV-KQATAFGMRSV-VY 136 (163)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV-ig 136 (163)
|+.....+.+ ...++.|.||. ||
T Consensus 201 T~S~~~~Pvl~~~~lkpG~hV~aIG 225 (346)
T PRK07589 201 TADKTNATILTDDMVEPGMHINAVG 225 (346)
T ss_pred cCCCCCCceecHHHcCCCcEEEecC
Confidence 5322111222 23568899876 44
No 416
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.53 E-value=0.13 Score=45.65 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
++.||.|+|++|.+|+.+++.+.+ .|.+++++
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~ 77 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSK-RGYEVAIV 77 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEE
Confidence 357899999999999999999985 58888764
No 417
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.19 Score=40.42 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.+|.|+|++|.+|+.+++.+.+ .+.+++....
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~~r 36 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR-AGYRVFGTSR 36 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeC
Confidence 4699999999999999999875 5888776543
No 418
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.43 E-value=0.19 Score=42.39 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.8
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~ 69 (163)
||+|+| +|.+|+.++..+....-. +|+ ++|+
T Consensus 2 kI~IIG-aG~vG~~~a~~l~~~g~~~ei~-l~D~ 33 (306)
T cd05291 2 KVVIIG-AGHVGSSFAYSLVNQGIADELV-LIDI 33 (306)
T ss_pred EEEEEC-CCHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 899999 599999999988754433 554 6775
No 419
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.41 E-value=0.83 Score=43.59 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=51.0
Q ss_pred CeeEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC-CHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i-~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~-~l~ell~~~~~~~~~DVVID 112 (163)
+.+|.|+| .|+.|... ++.+ ...|.++.+ .|.... ....++. ..|+.++. ...+.+ ..+|+||
T Consensus 4 ~~~i~viG-~G~sG~salA~~L-~~~G~~V~~-sD~~~~-~~~~~L~----~~gi~~~~g~~~~~~------~~~d~vV- 68 (809)
T PRK14573 4 SLFYHFIG-IGGIGMSALAHIL-LDRGYSVSG-SDLSEG-KTVEKLK----AKGARFFLGHQEEHV------PEDAVVV- 68 (809)
T ss_pred cceEEEEE-ecHHhHHHHHHHH-HHCCCeEEE-ECCCCC-hHHHHHH----HCCCEEeCCCCHHHc------CCCCEEE-
Confidence 34699999 69999987 6655 478999874 674321 1222332 44666652 222334 3789877
Q ss_pred cc--CchhHHHHHHHHHHcCCcEEE
Q 031216 113 FT--DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT--~p~~~~~~~~~al~~G~~vVi 135 (163)
.| .|.. .+.+..|.+.|++++.
T Consensus 69 ~SpgI~~~-~p~~~~a~~~gi~v~~ 92 (809)
T PRK14573 69 YSSSISKD-NVEYLSAKSRGNRLVH 92 (809)
T ss_pred ECCCcCCC-CHHHHHHHHCCCcEEe
Confidence 54 2332 3445667777877654
No 420
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.38 E-value=1.1 Score=40.05 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=48.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
.||+|+| .|+-|+..++.+. . +.+++ +.|.... +...+.... .... .....++.+. ++|.|| .|+
T Consensus 7 ~~v~v~G-~G~sG~a~~~~L~-~-g~~v~-v~D~~~~--~~~~~~~~~-~~~~-~~~~~~~~~~------~~d~vV-~SP 71 (454)
T PRK01368 7 QKIGVFG-LGKTGISVYEELQ-N-KYDVI-VYDDLKA--NRDIFEELY-SKNA-IAALSDSRWQ------NLDKIV-LSP 71 (454)
T ss_pred CEEEEEe-ecHHHHHHHHHHh-C-CCEEE-EECCCCC--chHHHHhhh-cCce-eccCChhHhh------CCCEEE-ECC
Confidence 4899999 7999999999987 4 88865 5774321 111111100 0001 1111223343 789877 552
Q ss_pred --chhHHHHHHHHHHcCCcEEE
Q 031216 116 --ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 116 --p~~~~~~~~~al~~G~~vVi 135 (163)
|. ..+.+..+.+.|++++.
T Consensus 72 gI~~-~~p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 72 GIPL-THEIVKIAKNFNIPITS 92 (454)
T ss_pred CCCC-CCHHHHHHHHCCCceec
Confidence 33 23566777788888754
No 421
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.38 E-value=0.12 Score=40.72 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|++|.+|+.+++.+.+ .+.+++++..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~-~G~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAA-EGARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence 5899999999999999999874 5888665543
No 422
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=93.37 E-value=0.58 Score=41.09 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=58.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc-
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT- 114 (163)
.-++|+| +|++|+++++.+. .=++.+++.-+... .+..+ ..|+. +.+++|++. .+|-+---+
T Consensus 147 KTLgvlG-~GrIGseVA~r~k-~~gm~vI~~dpi~~--~~~~~------a~gvq-~vsl~Eil~------~ADFitlH~P 209 (406)
T KOG0068|consen 147 KTLGVLG-LGRIGSEVAVRAK-AMGMHVIGYDPITP--MALAE------AFGVQ-LVSLEEILP------KADFITLHVP 209 (406)
T ss_pred cEEEEee-cccchHHHHHHHH-hcCceEEeecCCCc--hHHHH------hccce-eeeHHHHHh------hcCEEEEccC
Confidence 4599999 8999999999986 56787776433221 22222 33444 358999995 899766544
Q ss_pred -CchhH---HHHHHHHHHcCCcEEEeCCC
Q 031216 115 -DASTV---YDNVKQATAFGMRSVVYVPH 139 (163)
Q Consensus 115 -~p~~~---~~~~~~al~~G~~vVigttg 139 (163)
+|+.. .+...+.++.|+.+|--.-|
T Consensus 210 LtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 210 LTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred CCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 34432 36667789999998864443
No 423
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.37 E-value=0.47 Score=40.69 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=41.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecCC-----CC--cchhhhccCCCCCCcceeCCHHHHHhccc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHS-----VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSIS 102 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~~~-----~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~ 102 (163)
+||+|+||+|++|..++..+...+-+ +|+ ++|... .| .|+.+..... ..+..+..+..+.+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~-L~Di~~~~~~~~g~~~Dl~d~~~~~-~~~~~i~~~~~~~~~--- 75 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILH-LLDIPPAMKALEGVVMELQDCAFPL-LKGVVITTDPEEAFK--- 75 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEE-EEecCCccCccceeeeehhhhcccc-cCCcEEecChHHHhC---
Confidence 58999998899999999887754322 244 567432 12 1222221000 112344456666664
Q ss_pred ccCCccEEEEcc
Q 031216 103 QSKARAVVIDFT 114 (163)
Q Consensus 103 ~~~~~DVVIDfT 114 (163)
.+|+||...
T Consensus 76 ---~aDiVVitA 84 (323)
T cd00704 76 ---DVDVAILVG 84 (323)
T ss_pred ---CCCEEEEeC
Confidence 899988543
No 424
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=93.35 E-value=0.84 Score=40.60 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVID 112 (163)
+++||.|+| +|.=...++..+.++ +.++..+..+..-|. .... ..-+.+ ..|++++++ ++...++|.||-
T Consensus 1 ~~~kVLvlG-~G~re~al~~~l~~~-g~~v~~~~~~~Npg~---~~~a---~~~~~~~~~d~e~l~~-~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVG-SGGREDAIARAIKRS-GAILFSVIGHENPSI---KKLS---KKYLFYDEKDYDLIED-FALKNNVDIVFV 71 (435)
T ss_pred CceEEEEEC-CcHHHHHHHHHHHhC-CCeEEEEECCCChhh---hhcc---cceeecCCCCHHHHHH-HHHHhCCCEEEE
Confidence 368999999 688778888888765 467776654322111 1110 100111 257766553 344578998884
Q ss_pred ccCchhHHHHHHHHHHcCCcEE
Q 031216 113 FTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV 134 (163)
...+......+....+.|++++
T Consensus 72 ~~d~~l~~~~~~~l~~~Gi~v~ 93 (435)
T PRK06395 72 GPDPVLATPLVNNLLKRGIKVA 93 (435)
T ss_pred CCChHHHHHHHHHHHHCCCcEE
Confidence 3322233445566678898864
No 425
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=93.33 E-value=0.2 Score=43.35 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=59.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhccCCCCCC--cceeCCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g-~~~~~l~g~~~~~g--i~v~~~l~ell~~~~~~~~~DVVID 112 (163)
-.++|+| +|.+++.+++.+...-+++=+-+.+++... ++...-+. ...+ +...+|.++++. ..|+|+=
T Consensus 131 ~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~--~~~~~~v~a~~s~~~av~------~aDiIvt 201 (330)
T COG2423 131 STLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR--KRGGEAVGAADSAEEAVE------GADIVVT 201 (330)
T ss_pred cEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH--hhcCccceeccCHHHHhh------cCCEEEE
Confidence 4699999 699999999999998888888888865321 11111111 1222 445689999985 8999995
Q ss_pred ccCchhHHHHHHHHHHcCCcEE
Q 031216 113 FTDASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~vV 134 (163)
+| |....-.-...++.|.|+.
T Consensus 202 ~T-~s~~Pil~~~~l~~G~hI~ 222 (330)
T COG2423 202 AT-PSTEPVLKAEWLKPGTHIN 222 (330)
T ss_pred ec-CCCCCeecHhhcCCCcEEE
Confidence 44 4433323345577898876
No 426
>PRK06953 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.64 Score=36.40 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=26.5
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
|.++.|+|++|.+|+.+++.+. ..+.+++.+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~-~~G~~v~~~ 31 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYR-ADGWRVIAT 31 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHH-hCCCEEEEE
Confidence 4579999999999999999987 468998765
No 427
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.27 E-value=0.46 Score=42.16 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchh--hhccCCCCCCcceeC-----CHHHHHhccccc
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIG--MVCDMEQPLEIPVMS-----DLTMVLGSISQS 104 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g--~~~~--~l~g~~~~~gi~v~~-----~l~ell~~~~~~ 104 (163)
.+.||.+.|+.|+==...-..+...+.++++++..-...| .+.+ ++.|...+.|+|++. ++++++. +
T Consensus 5 a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ir----e 80 (449)
T COG2403 5 ARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIR----E 80 (449)
T ss_pred CceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHH----H
Confidence 3578899987554333333345678888888877632221 1112 233433477888873 3566666 4
Q ss_pred CCcc-EEEEcc--CchhHHHHHHHHHHcCCcEE
Q 031216 105 KARA-VVIDFT--DASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 105 ~~~D-VVIDfT--~p~~~~~~~~~al~~G~~vV 134 (163)
..+| +|+|.| +|+....++...+..|....
T Consensus 81 ~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~ 113 (449)
T COG2403 81 KDVDIVVLAYSDVSYEHVFRIASRVLSAGADFK 113 (449)
T ss_pred cCCCeEEEEcccCCHHHHHHHHHHHHhCCceeE
Confidence 8999 899998 67777888888888886544
No 428
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.27 E-value=0.44 Score=40.95 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=26.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEec
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDS 69 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~------eLvgvid~ 69 (163)
+|+||+|+|++|.+|..++-.+...+=+ ||+ ++|.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di 42 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLH-LLDI 42 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEE-EEec
Confidence 4799999997799999998887744322 554 6775
No 429
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.24 E-value=1.3 Score=39.65 Aligned_cols=85 Identities=21% Similarity=0.124 Sum_probs=50.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-chhhhccCCCCCCcceeCC-HHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~-~~~~l~g~~~~~gi~v~~~-l~ell~~~~~~~~~DVVID 112 (163)
.||+|+| .|+-|+..++.+. ..+.++. +.|.... .. +..++. ..+..++.. .++.+ .++|.||
T Consensus 9 ~~v~v~G-~G~sG~~~~~~l~-~~g~~v~-~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~------~~~d~vV- 74 (468)
T PRK04690 9 RRVALWG-WGREGRAAYRALR-AHLPAQA-LTLFCNAVEAREVGALA----DAALLVETEASAQRL------AAFDVVV- 74 (468)
T ss_pred CEEEEEc-cchhhHHHHHHHH-HcCCEEE-EEcCCCcccchHHHHHh----hcCEEEeCCCChHHc------cCCCEEE-
Confidence 5899999 6999999999987 5788866 4663211 11 111221 222233322 22334 3789887
Q ss_pred ccC--chhHHHHHHHHHHcCCcEEE
Q 031216 113 FTD--ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 113 fT~--p~~~~~~~~~al~~G~~vVi 135 (163)
.|+ |. ..+.+..|.+.|++++.
T Consensus 75 ~SpgI~~-~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 75 KSPGISP-YRPEALAAAARGTPFIG 98 (468)
T ss_pred ECCCCCC-CCHHHHHHHHcCCcEEE
Confidence 552 43 34567777888888765
No 430
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.22 E-value=0.63 Score=38.07 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=48.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~e-Lvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
-+|.|+|+ |.+|...++.+. .-+.+ +++ +++...-.+..+-+|.. .+.-+.+..+.+.++.....+|+++|++
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak-~~G~~~Vi~-~~~~~~r~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~d~vid~~ 195 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAA-AAGAARVVA-ADPSPDRRELALSFGAT---ALAEPEVLAERQGGLQNGRGVDVALEFS 195 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCCEEEE-ECCCHHHHHHHHHcCCc---EecCchhhHHHHHHHhCCCCCCEEEECC
Confidence 37999995 999998888765 56876 544 45322111111111210 0111122222221111124699999988
Q ss_pred CchhHHHHHHHHH-HcCCcEEEeC
Q 031216 115 DASTVYDNVKQAT-AFGMRSVVYV 137 (163)
Q Consensus 115 ~p~~~~~~~~~al-~~G~~vVigt 137 (163)
-.....+.+..++ ..|.-+++|.
T Consensus 196 G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 GATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CChHHHHHHHHHhcCCCEEEEecc
Confidence 4433444444444 4455555664
No 431
>PRK09186 flagellin modification protein A; Provisional
Probab=93.17 E-value=0.53 Score=37.33 Aligned_cols=31 Identities=35% Similarity=0.324 Sum_probs=26.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.+|.|+|++|++|+.+++.+.+ .+.+++...
T Consensus 5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILE-AGGIVIAAD 35 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEe
Confidence 5799999999999999999974 688887653
No 432
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.15 E-value=0.93 Score=40.04 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=50.0
Q ss_pred eEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHH-HHHhcccccCCccEEEEcc
Q 031216 37 KVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 37 rV~VvGa~G~mG~~-i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~-ell~~~~~~~~~DVVIDfT 114 (163)
+|-++| .|+.|.. +++.+. ..|.++. +.|.... .....+. +.++.++...+ +.+ .++|+|| .|
T Consensus 1 ~~~~iG-iggsGm~~la~~L~-~~G~~v~-~~D~~~~-~~~~~l~----~~gi~~~~g~~~~~~------~~~d~vV-~s 65 (448)
T TIGR01082 1 KIHFVG-IGGIGMSGIAEILL-NRGYQVS-GSDIAEN-ATTKRLE----ALGIPIYIGHSAENL------DDADVVV-VS 65 (448)
T ss_pred CEEEEE-ECHHHHHHHHHHHH-HCCCeEE-EECCCcc-hHHHHHH----HCcCEEeCCCCHHHC------CCCCEEE-EC
Confidence 478999 5999998 777766 6799976 4774321 1112221 34666653222 233 3689877 44
Q ss_pred --CchhHHHHHHHHHHcCCcEEE
Q 031216 115 --DASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 115 --~p~~~~~~~~~al~~G~~vVi 135 (163)
.|.. .+.+..|.+.|++++.
T Consensus 66 pgi~~~-~p~~~~a~~~~i~v~~ 87 (448)
T TIGR01082 66 AAIKDD-NPEIVEAKERGIPVIR 87 (448)
T ss_pred CCCCCC-CHHHHHHHHcCCceEe
Confidence 2332 3456667788888764
No 433
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=93.14 E-value=0.58 Score=41.46 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=55.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHH---HHhcccccCCccEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAVV 110 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~--~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~e---ll~~~~~~~~~DVV 110 (163)
-|+.|+| .|.-|..+.+...++ .+++++|.++.+... .. -.+++++.+.++ .+. +.++|-|
T Consensus 125 rrvLIIG-ag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~---~~------i~gvpVlG~~~dl~~~v~----~~~Id~V 190 (442)
T TIGR03013 125 RRILVLG-TGPRAREIARLRRSSDRRGHEIVGFVPLPDEP---AY------VPSEHVIENGDGLVEYVL----RHRIDEI 190 (442)
T ss_pred CcEEEEE-CCHHHHHHHHHHHhCccCCeEEEEEEcCCccc---cc------cCCCcccCCHHHHHHHHH----hCCCCEE
Confidence 5799999 599999995554444 368999999532111 11 235677766554 444 3789987
Q ss_pred EEccCchhH----HHHHHHHHHcCCcEEE
Q 031216 111 IDFTDASTV----YDNVKQATAFGMRSVV 135 (163)
Q Consensus 111 IDfT~p~~~----~~~~~~al~~G~~vVi 135 (163)
+ .+.|... .+.+..|.+.|+++.+
T Consensus 191 i-IAlp~~~~~~~~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 191 V-IALDERRGSLPVDELLECKLSGIEVVD 218 (442)
T ss_pred E-EECchhhcchHHHHHHHHHhCCCEEEE
Confidence 7 4545433 2346777888988765
No 434
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.13 E-value=0.55 Score=36.78 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=28.1
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+.++.|+|++|.+|+.+++.+.+ .+.+++.++++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r 38 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDI 38 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 45799999999999999999874 58898766454
No 435
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=93.12 E-value=1.9 Score=39.30 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhccCCC-CCCccee----CC-------
Q 031216 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ-PLEIPVM----SD------- 93 (163)
Q Consensus 31 ~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~-----~~~g~~~~~l~g~~~-~~gi~v~----~~------- 93 (163)
++.+-.|+.|-| .|+.|...++.+. .++-.++++.|. .+.|-|..+++.+.. +..+.-+ .+
T Consensus 247 ~~~kgkr~~i~G-~Gnv~~~aa~~l~-~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~ 324 (514)
T KOG2250|consen 247 KGIKGKRVVIQG-FGNVGGHAAKKLS-EKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAG 324 (514)
T ss_pred CCcCceEEEEeC-CCchHHHHHHHHH-hcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCcccccc
Confidence 555668899998 7999997777665 799999999994 345766666554320 1111111 01
Q ss_pred -HHHHHhcccccCCccEEEEccCchh-HHHHHHHHHHcCCcEEEeCC--CCCHHHHHHHHHH
Q 031216 94 -LTMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP--HIQLETVSALSAF 151 (163)
Q Consensus 94 -l~ell~~~~~~~~~DVVIDfT~p~~-~~~~~~~al~~G~~vVigtt--g~~~e~~~~L~~~ 151 (163)
.-..+. .++|+.+=+..-.. ..+++......|++.|++-. +.|+|..+-|++.
T Consensus 325 ~~~~~~v-----~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~ 381 (514)
T KOG2250|consen 325 LPPWTLV-----EKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKA 381 (514)
T ss_pred CcchhhH-----hhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhC
Confidence 113343 48999887654444 47999999999999999877 3466665555543
No 436
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.12 E-value=0.41 Score=40.05 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=51.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID 112 (163)
-+|.|.|++|.+|..+++.+. ..|+++++..++...-..+.+.+|. ..+.-| .++.+.+.... ...+|+++|
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~~~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~-~~gvd~v~d 227 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDEKVDLLKNKLGF---DDAFNYKEEPDLDAALKRYF-PNGIDIYFD 227 (338)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHhcCC---ceeEEcCCcccHHHHHHHhC-CCCcEEEEE
Confidence 479999999999999888665 6788877665432110111110221 111112 13433332211 146899999
Q ss_pred ccCchhHHHHHHHHHH-cCCcEEEeC
Q 031216 113 FTDASTVYDNVKQATA-FGMRSVVYV 137 (163)
Q Consensus 113 fT~p~~~~~~~~~al~-~G~~vVigt 137 (163)
+.-... .+.+..+++ .|.-+.+|.
T Consensus 228 ~~g~~~-~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 228 NVGGKM-LDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CCCHHH-HHHHHHHhccCcEEEEecc
Confidence 875433 344444444 444444543
No 437
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=93.06 E-value=0.42 Score=42.31 Aligned_cols=97 Identities=9% Similarity=0.057 Sum_probs=51.7
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchh-hhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~---~~~g~~~~-~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
|.||+|+| .|.++..+++.+.++ |++++++... ...+.... +..-+.......-|.|.+.+++ ++...++|+|
T Consensus 2 ~kkili~g-~g~~~~~~~~aa~~l-G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~I 78 (449)
T TIGR00514 2 LDKILIAN-RGEIALRILRACKEL-GIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIIS-AAEITGADAI 78 (449)
T ss_pred cceEEEeC-CCHHHHHHHHHHHHc-CCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHH-HHHHhCCCEE
Confidence 56999999 599999999998854 8999976431 11111111 1000000011123556566553 2334789998
Q ss_pred EEccCc-hhHHHHHHHHHHcCCcEE
Q 031216 111 IDFTDA-STVYDNVKQATAFGMRSV 134 (163)
Q Consensus 111 IDfT~p-~~~~~~~~~al~~G~~vV 134 (163)
+-.... ......+..+.+.|++++
T Consensus 79 ~pg~g~~se~~~~a~~~e~~Gi~~~ 103 (449)
T TIGR00514 79 HPGYGFLSENANFAEQCERSGFTFI 103 (449)
T ss_pred EeCCCccccCHHHHHHHHHCCCcEE
Confidence 732200 111223455666777753
No 438
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.04 E-value=1.1 Score=39.64 Aligned_cols=84 Identities=23% Similarity=0.146 Sum_probs=47.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
.||.|+| .|+.|...++.+. ..|.++. +.|.... ....+. ..|+.+...-.+-+ .++|+|| .|+
T Consensus 10 ~~i~viG-~G~~G~~~a~~l~-~~G~~v~-~~D~~~~--~~~~l~----~~g~~~~~~~~~~~------~~~d~vv-~sp 73 (460)
T PRK01390 10 KTVAVFG-LGGSGLATARALV-AGGAEVI-AWDDNPA--SRAKAA----AAGITTADLRTADW------SGFAALV-LSP 73 (460)
T ss_pred CEEEEEe-ecHhHHHHHHHHH-HCCCEEE-EECCChh--hHHHHH----hcCccccCCChhHH------cCCCEEE-ECC
Confidence 5899999 6999999887776 6688865 4774311 111221 23444332111223 3789887 552
Q ss_pred --chhH---HHHHHHHHHcCCcEEE
Q 031216 116 --ASTV---YDNVKQATAFGMRSVV 135 (163)
Q Consensus 116 --p~~~---~~~~~~al~~G~~vVi 135 (163)
|..+ ...+..+.+.|++++.
T Consensus 74 ~i~~~~~~~~~~v~~a~~~gi~i~~ 98 (460)
T PRK01390 74 GVPLTHPKPHWVVDLARAAGVEVIG 98 (460)
T ss_pred CCCccCCcccHHHHHHHHcCCcEEe
Confidence 3221 1345555666666543
No 439
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.01 E-value=0.53 Score=40.18 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=41.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCccEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVV 110 (163)
.||+|+|+ |++|..++-.+...+-..=..++|... .| .|+.+.........+..+.|+++ + .++|+|
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~------~~adiv 75 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T------ANSKVV 75 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h------CCCCEE
Confidence 59999995 999999988877554443344788432 12 22222221110123333478876 4 489998
Q ss_pred EEc
Q 031216 111 IDF 113 (163)
Q Consensus 111 IDf 113 (163)
|.+
T Consensus 76 vit 78 (312)
T cd05293 76 IVT 78 (312)
T ss_pred EEC
Confidence 864
No 440
>PRK07578 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.37 Score=37.09 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=24.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
+++.|+|++|.+|+.+++.+.+. .+++...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~ 30 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAG 30 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence 37999999999999999999865 6666543
No 441
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=92.97 E-value=0.3 Score=41.77 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=24.1
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
||+|+| .|..|+.+++.+.+ -|++++.+-
T Consensus 1 kililG-~g~~~~~l~~aa~~-~G~~v~~~d 29 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQR-LGVEVIAVD 29 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHH-cCCEEEEEe
Confidence 799999 69999999999875 489877543
No 442
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.96 E-value=0.43 Score=39.76 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=50.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVID 112 (163)
-+|.|.|++|.+|...++.+. .-+. ++++...+......+.+.+|.. .+..+ .++.+.+.++. ...+|+++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~-~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELC-PEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence 479999999999999888765 5687 7776655321101111112211 11111 23433332211 146999999
Q ss_pred ccCchhHHHHHHHHHHc-CCcEEEe
Q 031216 113 FTDASTVYDNVKQATAF-GMRSVVY 136 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~-G~~vVig 136 (163)
++..... +.+..+++. |.-+.+|
T Consensus 231 ~~g~~~~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 231 NVGGEIS-DTVISQMNENSHIILCG 254 (345)
T ss_pred CCCcHHH-HHHHHHhccCCEEEEEe
Confidence 8754443 444445544 4444455
No 443
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=92.94 E-value=1.4 Score=34.67 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=26.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.+.|+|++|.+|+.+++.+.+ .+.+++...+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~ 35 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCG 35 (246)
T ss_pred EEEEECCCChHHHHHHHHHHH-cCCEEEEEcC
Confidence 589999999999999999985 5788876554
No 444
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=1.7 Score=39.03 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=51.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee-CC-HHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SD-LTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~-~~-l~ell~~~~~~~~~DVVIDf 113 (163)
.||.|+| .|+.|..+++.+. ..|.++. +.|....-.....+... ..++.++ .+ ..+.+. .+|+|| .
T Consensus 8 ~~i~v~G-~G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~L~~~--~~~~~~~~g~~~~~~~~------~~d~vv-~ 75 (498)
T PRK02006 8 PMVLVLG-LGESGLAMARWCA-RHGARLR-VADTREAPPNLAALRAE--LPDAEFVGGPFDPALLD------GVDLVA-L 75 (498)
T ss_pred CEEEEEe-ecHhHHHHHHHHH-HCCCEEE-EEcCCCCchhHHHHHhh--cCCcEEEeCCCchhHhc------CCCEEE-E
Confidence 5799999 6999999888776 6788876 47743211111122110 1133333 22 233443 789877 5
Q ss_pred c--Cchh---HHHHHHHHHHcCCcEEE
Q 031216 114 T--DAST---VYDNVKQATAFGMRSVV 135 (163)
Q Consensus 114 T--~p~~---~~~~~~~al~~G~~vVi 135 (163)
| .|.. ..+.+..|.+.|++++.
T Consensus 76 sp~I~~~~~~~~~~~~~a~~~~i~v~~ 102 (498)
T PRK02006 76 SPGLSPLEAALAPLVAAARERGIPVWG 102 (498)
T ss_pred CCCCCCcccccCHHHHHHHHCCCcEEE
Confidence 5 2322 13667777888999865
No 445
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.82 E-value=0.81 Score=38.51 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf 113 (163)
-+|.|.|+ |.+|...++.+. .-+.+-+-++++...-.+...-+|.. .+.-+ .++++.... ...+|++||+
T Consensus 171 ~~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~---~g~~D~vid~ 242 (343)
T PRK09880 171 KRVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSPRSLSLAREMGAD---KLVNPQNDDLDHYKAE---KGYFDVSFEV 242 (343)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCHHHHHHHHHcCCc---EEecCCcccHHHHhcc---CCCCCEEEEC
Confidence 47999995 999999888766 55774333444321111111112210 11111 234444331 1248999999
Q ss_pred cCchhHHHHHHHHHHc-CCcEEEeCC
Q 031216 114 TDASTVYDNVKQATAF-GMRSVVYVP 138 (163)
Q Consensus 114 T~p~~~~~~~~~al~~-G~~vVigtt 138 (163)
+-.....+.+..+++. |+=+.+|.+
T Consensus 243 ~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 243 SGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 8644444444455555 454556653
No 446
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.76 E-value=1.2 Score=39.27 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=49.2
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Cc-ch-hhhccCCCCCCcceeC--CHH-----HHHhcccccCC
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GE-DI-GMVCDMEQPLEIPVMS--DLT-----MVLGSISQSKA 106 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~-~~-~~l~g~~~~~gi~v~~--~l~-----ell~~~~~~~~ 106 (163)
||.|+| .|..|...++.+. ..|.++. +.|.... .. +. ..+. +.++.++. +.+ +.+ .+
T Consensus 2 ~v~viG-~G~sG~s~a~~l~-~~G~~V~-~~D~~~~~~~~~~~~~l~----~~gi~~~~g~~~~~~~~~~~~------~~ 68 (459)
T PRK02705 2 IAHVIG-LGRSGIAAARLLK-AQGWEVV-VSDRNDSPELLERQQELE----QEGITVKLGKPLELESFQPWL------DQ 68 (459)
T ss_pred eEEEEc-cCHHHHHHHHHHH-HCCCEEE-EECCCCchhhHHHHHHHH----HcCCEEEECCccchhhhhHHh------hc
Confidence 799999 5999999877776 5788866 5774321 11 11 1121 33555532 121 233 37
Q ss_pred ccEEEEccC--chhHHHHHHHHHHcCCcEEE
Q 031216 107 RAVVIDFTD--ASTVYDNVKQATAFGMRSVV 135 (163)
Q Consensus 107 ~DVVIDfT~--p~~~~~~~~~al~~G~~vVi 135 (163)
+|.|| .|+ |.. .+.+..|.+.|++++.
T Consensus 69 ~d~vv-~s~gi~~~-~~~~~~a~~~~i~v~~ 97 (459)
T PRK02705 69 PDLVV-VSPGIPWD-HPTLVELRERGIEVIG 97 (459)
T ss_pred CCEEE-ECCCCCCC-CHHHHHHHHcCCcEEE
Confidence 89877 442 322 3566667788888753
No 447
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.74 E-value=0.79 Score=39.37 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=54.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhccCCCCCCcceeC---CHHHHHhcccccCCccEEEE
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~-~l~g~~~~~gi~v~~---~l~ell~~~~~~~~~DVVID 112 (163)
+|+|+| .|-+|-..+..+. .-+..-+-++|....-.+.. ++.+. .+.+.. +..+....+.+...+|++||
T Consensus 171 ~V~V~G-aGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVG-AGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEEC-CCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEEE
Confidence 799999 5999998877665 45555555667432111111 21111 111111 11111111112246999999
Q ss_pred ccC-chhHHHHHHHHHHcCCcEEEeCCCCC
Q 031216 113 FTD-ASTVYDNVKQATAFGMRSVVYVPHIQ 141 (163)
Q Consensus 113 fT~-p~~~~~~~~~al~~G~~vVigttg~~ 141 (163)
+|- +....+.+..+...|.-+++|.++-.
T Consensus 245 ~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 245 AVGSPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 994 44445566666667788889888554
No 448
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.71 E-value=0.2 Score=39.99 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=29.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
++|.|.|++|..|+.+++.+.+. +.++.++..+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 47999999999999999999866 9999988875
No 449
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.69 E-value=1 Score=35.82 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~-~g~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAE-AGARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence 6899999999999999999974 578876544
No 450
>PRK07577 short chain dehydrogenase; Provisional
Probab=92.61 E-value=0.28 Score=38.35 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=26.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|++|.+|+.+++.+. ..+.+++.+..
T Consensus 4 k~vlItG~s~~iG~~ia~~l~-~~G~~v~~~~r 35 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLA-NLGHQVIGIAR 35 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeC
Confidence 469999999999999999987 46888876544
No 451
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=92.56 E-value=1.8 Score=38.04 Aligned_cols=102 Identities=14% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhccCCCCCCccee-CCHHHHHhcccc-cCCccEE
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQ-SKARAVV 110 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-g~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~-~~~~DVV 110 (163)
.+..+.|+|++|..|+.+++++.+.....-+-++|.... -....+..+.. +..+... .|+.+...- .+ -..+ +|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i-~~a~~~~-~V 79 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSI-SNAFQGA-VV 79 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhh-hhhccCc-eE
Confidence 467899999999999999999998875666667884321 11111222110 2233332 333221110 00 0133 33
Q ss_pred EEcc------------------CchhHHHHHHHHHHcCCcEEEeCC
Q 031216 111 IDFT------------------DASTVYDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 111 IDfT------------------~p~~~~~~~~~al~~G~~vVigtt 138 (163)
+.++ +-.....+++.|.+.|++.+|-|.
T Consensus 80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtS 125 (361)
T KOG1430|consen 80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTS 125 (361)
T ss_pred EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEec
Confidence 3332 112346788999999999998775
No 452
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.56 E-value=1.3 Score=34.04 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=45.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.||.|+|+ |++|...++.+.+ .+.+++ ++++.. ..++.++. .+. ....+++..- ...|+||-.|
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT 78 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT 78 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence 68999995 9999999998874 677777 445332 22222211 111 1234443322 4789888777
Q ss_pred CchhHHHHHHHHHHcC
Q 031216 115 DASTVYDNVKQATAFG 130 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G 130 (163)
..+.....+..+.+.+
T Consensus 79 ~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 79 NQHAVNMMVKQAAHDF 94 (157)
T ss_pred CCHHHHHHHHHHHHHC
Confidence 5555544333333334
No 453
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=92.54 E-value=0.48 Score=41.96 Aligned_cols=118 Identities=12% Similarity=0.154 Sum_probs=73.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce--eCCHHHHHhcccccCCccEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v--~~~l~ell~~~~~~~~~DVVID 112 (163)
+.+|+++| .+-||+.++-.+. ..++.+.+ +.++. ....+++... ..+.++ ..|++++...+ .+|-+|+-
T Consensus 6 ~~digLiG-LaVMGqnLiLN~~-d~Gf~v~~-yNRT~--skvD~flane-ak~~~i~ga~S~ed~v~kl---k~PR~iil 76 (487)
T KOG2653|consen 6 KADIGLIG-LAVMGQNLILNIA-DKGFTVCA-YNRTT--SKVDEFLANE-AKGTKIIGAYSLEDFVSKL---KKPRVIIL 76 (487)
T ss_pred ccchhhhh-Hhhhhhhhhhccc-ccCceEEE-eccch--HhHHHHHHHh-hcCCcccCCCCHHHHHHhc---CCCcEEEE
Confidence 46799999 8999999887776 67888774 45432 2334444332 334444 36888887654 46776664
Q ss_pred cc----CchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 113 FT----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 113 fT----~p~~~~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
.- +-+...+.+..+++.|=-+|=|--..-++...+-++++ +.|++|.||
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~-k~GilfvG~ 129 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELA-KKGILFVGS 129 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHH-hcCcEEEec
Confidence 32 33455777888888887666544333233334444444 567777775
No 454
>PRK07023 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.23 Score=39.36 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=27.6
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
|+++.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVA 32 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHh-CCCEEEEEe
Confidence 56899999999999999999875 588987654
No 455
>PRK06153 hypothetical protein; Provisional
Probab=92.54 E-value=0.6 Score=41.41 Aligned_cols=93 Identities=20% Similarity=0.150 Sum_probs=53.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---------CCC----cchhh-------h----ccCCCCCCccee
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---------SVG----EDIGM-------V----CDMEQPLEIPVM 91 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~---------~~g----~~~~~-------l----~g~~~~~gi~v~ 91 (163)
.||+|+| +|+.|..++..|.+..--+|+ ++|.+ ..| .++++ + ..+ ..++...
T Consensus 177 ~~VaIVG-~GG~GS~Va~~LAR~GVgeI~-LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i--n~~I~~~ 252 (393)
T PRK06153 177 QRIAIIG-LGGTGSYILDLVAKTPVREIH-LFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM--RRGIVPH 252 (393)
T ss_pred CcEEEEc-CCccHHHHHHHHHHcCCCEEE-EECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh--CCeEEEE
Confidence 6999999 599999999999876544555 67732 111 11111 0 001 1122111
Q ss_pred -C--CHHHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcCCcEEEe
Q 031216 92 -S--DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY 136 (163)
Q Consensus 92 -~--~l~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig 136 (163)
. +.+.+. . -..+|+|||++..... ......|.+.|+|+|-+
T Consensus 253 ~~~I~~~n~~-~---L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~ 297 (393)
T PRK06153 253 PEYIDEDNVD-E---LDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDV 297 (393)
T ss_pred eecCCHHHHH-H---hcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 1 212111 1 1478999999855444 34557788899998743
No 456
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.53 E-value=0.61 Score=38.85 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEccC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT~ 115 (163)
-+++|+| .|.+|...++.+. .-+.+.+.++|... .+.. .++ ... +++ .++... ..+|++||++-
T Consensus 146 ~~vlV~G-~G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl~-~a~---~~~--~i~-~~~~~~-----~g~Dvvid~~G 209 (308)
T TIGR01202 146 LPDLIVG-HGTLGRLLARLTK-AAGGSPPAVWETNP--RRRD-GAT---GYE--VLD-PEKDPR-----RDYRAIYDASG 209 (308)
T ss_pred CcEEEEC-CCHHHHHHHHHHH-HcCCceEEEeCCCH--HHHH-hhh---hcc--ccC-hhhccC-----CCCCEEEECCC
Confidence 3699999 5999998887665 56888776676432 1111 111 111 122 122111 47999999986
Q ss_pred chhH-HHHHHHHHHcCCcEEEeCC
Q 031216 116 ASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 116 p~~~-~~~~~~al~~G~~vVigtt 138 (163)
.... ...+......|+-+++|.+
T Consensus 210 ~~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 210 DPSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred CHHHHHHHHHhhhcCcEEEEEeec
Confidence 4444 4445555566666667754
No 457
>PRK06196 oxidoreductase; Provisional
Probab=92.52 E-value=0.54 Score=39.14 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=27.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 27 k~vlITGasggIG~~~a~~L~~-~G~~Vv~~~R 58 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQ-AGAHVIVPAR 58 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeC
Confidence 5799999999999999999874 6888886543
No 458
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=92.51 E-value=0.24 Score=42.20 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHhhhcCeEEcCC
Q 031216 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMVSTGS 162 (163)
Q Consensus 120 ~~~~~~al~~G~~vVigttg~~~e~~~~L~~~A~~~~Vv~tg~ 162 (163)
.-|+.+|++.|++.|-++|.+..+ .+.+.++|++.++.+.|.
T Consensus 190 ~~YA~AAl~~g~~fvN~tP~~~a~-~P~l~ela~~~gvpi~Gd 231 (295)
T PF07994_consen 190 MLYAYAALEAGVPFVNGTPSNIAD-DPALVELAEEKGVPIAGD 231 (295)
T ss_dssp HHHHHHHHHTTEEEEE-SSSTTTT-SHHHHHHHHHHTEEEEES
T ss_pred HHHHHHHHHCCCCeEeccCccccC-CHHHHHHHHHcCCCeecc
Confidence 458889999999999999977643 468999999999998874
No 459
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.43 E-value=1.7 Score=36.03 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=52.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee---CCHHHHHhcccccCCccEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVID 112 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~---~~l~ell~~~~~~~~~DVVID 112 (163)
-+|.|.|+.|.+|...++.+. ..+.++++...+... .+...-+|. ..+.-+ +++++.+.... ...+|+++|
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~s~~~-~~~~~~lGa---~~vi~~~~~~~~~~~~~~~~-~~gvdvv~d 213 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEK-VAYLKKLGF---DVAFNYKTVKSLEETLKKAS-PDGYDCYFD 213 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHHH-HHHHHHcCC---CEEEeccccccHHHHHHHhC-CCCeEEEEE
Confidence 479999988999999887765 678888766543211 111111111 011112 23444332110 136899999
Q ss_pred ccCchhHHHHHHHHHHcCCcE-EEeC
Q 031216 113 FTDASTVYDNVKQATAFGMRS-VVYV 137 (163)
Q Consensus 113 fT~p~~~~~~~~~al~~G~~v-Vigt 137 (163)
++-.... +.+..+++.+=.+ .+|.
T Consensus 214 ~~G~~~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 214 NVGGEFS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCCHHHH-HHHHHHhCcCcEEEEecc
Confidence 8755444 5555555555444 4554
No 460
>PRK05442 malate dehydrogenase; Provisional
Probab=92.37 E-value=0.55 Score=40.40 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=41.1
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecC-----CCC--cchhhhc-cCCCCCCcceeCCHHHHHh
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSH-----SVG--EDIGMVC-DMEQPLEIPVMSDLTMVLG 99 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~------~~eLvgvid~~-----~~g--~~~~~l~-g~~~~~gi~v~~~l~ell~ 99 (163)
.|.||+|+|++|.+|..++-.+.... ..+|+ ++|.. ..| .|+.+.. .. ..++.++.+..+.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~-LiDi~~~~~~~~g~a~Dl~~~~~~~--~~~~~i~~~~y~~~- 78 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQ-LLEIPPALKALEGVVMELDDCAFPL--LAGVVITDDPNVAF- 78 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEE-EEecCCcccccceeehhhhhhhhhh--cCCcEEecChHHHh-
Confidence 36799999977999999887765322 22555 67742 122 2222222 11 11344554544555
Q ss_pred cccccCCccEEEEc
Q 031216 100 SISQSKARAVVIDF 113 (163)
Q Consensus 100 ~~~~~~~~DVVIDf 113 (163)
.++|+||..
T Consensus 79 -----~daDiVVit 87 (326)
T PRK05442 79 -----KDADVALLV 87 (326)
T ss_pred -----CCCCEEEEe
Confidence 489988854
No 461
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.32 E-value=0.65 Score=36.79 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=26.1
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
..+.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~-~g~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAA-AGFDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHH-CCCEEEEEe
Confidence 4589999999999999999985 588887654
No 462
>PRK12742 oxidoreductase; Provisional
Probab=92.31 E-value=1.1 Score=35.12 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=26.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.+|.|.|++|.+|+.+++.+.+ .+.+++....
T Consensus 7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~~~ 38 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFTYA 38 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEecC
Confidence 5799999999999999999874 5788775433
No 463
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=92.29 E-value=0.44 Score=40.45 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=46.9
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhccCCCCCCcceeC--CH-----HHHHh
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--DL-----TMVLG 99 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~--~g--~-----~~~~l~g~~~~~gi~v~~--~l-----~ell~ 99 (163)
|||+++| ++.++...++.+.+. +.++++|+..+. .| . ++.+++ ...++|++. ++ .+.+.
T Consensus 1 mkIvf~G-~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~ 75 (309)
T PRK00005 1 MRIVFMG-TPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA 75 (309)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence 6999999 799999999999854 899999996321 11 1 233443 256777753 21 22333
Q ss_pred cccccCCccEEEEccC
Q 031216 100 SISQSKARAVVIDFTD 115 (163)
Q Consensus 100 ~~~~~~~~DVVIDfT~ 115 (163)
+.++|++|-++.
T Consensus 76 ----~~~~Dliv~~~~ 87 (309)
T PRK00005 76 ----ALNADVIVVVAY 87 (309)
T ss_pred ----hcCcCEEEEehh
Confidence 268998876553
No 464
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=92.25 E-value=0.77 Score=40.16 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=48.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
+||+|+| +|.-...++..+.++++...+.+ ++...|. .... + .+. -+.|.+++++ +++..++|+|+-.+
T Consensus 1 ~kvliiG-~G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~---~~~~---~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 70 (420)
T PRK00885 1 MKVLVIG-SGGREHALAWKLAQSPLVEKVYV-APGNAGT---ALLA---E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP 70 (420)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEE-eCCCHHH---Hhhc---c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 6999999 58666668888877777644433 4322121 1110 1 111 1256666543 23346799888333
Q ss_pred CchhHHHHHHHHHHcCCcEE
Q 031216 115 DASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV 134 (163)
........+..+.+.|++++
T Consensus 71 e~~l~~~~~~~l~~~gi~~~ 90 (420)
T PRK00885 71 EAPLVAGIVDAFRAAGLPIF 90 (420)
T ss_pred chHHHHHHHHHHHHCCCcEE
Confidence 22223355556667888864
No 465
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.22 E-value=0.38 Score=37.49 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+..++.|+|++|.+|+.+++.+.+ .+.++..+ ++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~-~R 60 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAR-EGARVVLV-GR 60 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEE-cC
Confidence 346899999889999999999875 46677644 44
No 466
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.22 E-value=2.2 Score=35.23 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=25.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
.++.|+|++|.+|+.+++.+. ..|.+++.+
T Consensus 10 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~ 39 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLH-ARGAKLALV 39 (296)
T ss_pred CEEEEECCCchHHHHHHHHHH-HCCCEEEEE
Confidence 579999999999999999987 467887644
No 467
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.21 E-value=0.8 Score=36.80 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=26.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|+++.+|+.+++.+. ..+.+++.+.+
T Consensus 9 k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~ 40 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFA-QSGVNIAFTYN 40 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcC
Confidence 478999999999999999988 47888876544
No 468
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.14 E-value=0.31 Score=43.08 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKAR 59 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~ 59 (163)
.++||+|+|++|++|..++-.+....
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence 37999999977999999988876443
No 469
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.12 E-value=0.3 Score=41.52 Aligned_cols=90 Identities=9% Similarity=0.037 Sum_probs=50.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccC-CC-CCCcceeCCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~-~~-~~gi~v~~~l~ell~~~~~~~~~DVVIDf 113 (163)
-+++|+| +|..++.+++.+...-.++=+-+.+++. ..+.++... .. ...+...+|+++++. ..|+|+=+
T Consensus 129 ~~l~viG-aG~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av~------~aDii~ta 199 (313)
T PF02423_consen 129 RTLGVIG-AGVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAVR------GADIIVTA 199 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHHT------TSSEEEE-
T ss_pred ceEEEEC-CCHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhcc------cCCEEEEc
Confidence 5899999 6999999999998866688888888653 122222211 01 233445789999985 89999955
Q ss_pred cCchhHHHHH-HHHHHcCCcEE
Q 031216 114 TDASTVYDNV-KQATAFGMRSV 134 (163)
Q Consensus 114 T~p~~~~~~~-~~al~~G~~vV 134 (163)
|+.....+.+ ...++.|.||.
T Consensus 200 T~s~~~~P~~~~~~l~~g~hi~ 221 (313)
T PF02423_consen 200 TPSTTPAPVFDAEWLKPGTHIN 221 (313)
T ss_dssp ---SSEEESB-GGGS-TT-EEE
T ss_pred cCCCCCCccccHHHcCCCcEEE
Confidence 5322200111 23467888876
No 470
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=92.12 E-value=0.4 Score=40.86 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=41.5
Q ss_pred EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeCCHHHHHhcccccCCccEEEEcc
Q 031216 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
|+|.|++|-+|+.+...+. ..|.++.-+..+.... .... ...+...+.+++... -.+|+||+.+
T Consensus 1 IliTGgTGlIG~~L~~~L~-~~gh~v~iltR~~~~~---~~~~----~~~v~~~~~~~~~~~-----~~~DavINLA 64 (297)
T COG1090 1 ILITGGTGLIGRALTARLR-KGGHQVTILTRRPPKA---SQNL----HPNVTLWEGLADALT-----LGIDAVINLA 64 (297)
T ss_pred CeEeccccchhHHHHHHHH-hCCCeEEEEEcCCcch---hhhc----Cccccccchhhhccc-----CCCCEEEECC
Confidence 5789999999999999886 6788998777754311 1111 112222244555543 2699999975
No 471
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.12 E-value=3.2 Score=33.05 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=26.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 8 k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~ 39 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLR-EGAKVAVLYN 39 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence 5799999999999999999974 5788775443
No 472
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.06 E-value=0.44 Score=42.86 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhc------CCc--EEEEEEecCC---CC--cchhhhc-cCCCCCCcceeCCHHHHHh
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKA------RGM--EVAGAIDSHS---VG--EDIGMVC-DMEQPLEIPVMSDLTMVLG 99 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~------~~~--eLvgvid~~~---~g--~~~~~l~-g~~~~~gi~v~~~l~ell~ 99 (163)
+++||+|+|++|.+|..++-.+... .++ ||+ .+|... .| +|+.+-. .. ...+.+..+..+.+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLv-liD~~~~~a~G~amDL~daa~~~--~~~v~i~~~~ye~~- 174 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLL-GSERSKQALEGVAMELEDSLYPL--LREVSIGIDPYEVF- 174 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEE-EEcCCcchhHHHHHHHHHhhhhh--cCceEEecCCHHHh-
Confidence 4799999997799999999887643 134 666 557421 12 2222221 11 11355444434444
Q ss_pred cccccCCccEEEEc
Q 031216 100 SISQSKARAVVIDF 113 (163)
Q Consensus 100 ~~~~~~~~DVVIDf 113 (163)
.+.|+||..
T Consensus 175 -----kdaDiVVit 183 (444)
T PLN00112 175 -----QDAEWALLI 183 (444)
T ss_pred -----CcCCEEEEC
Confidence 489998854
No 473
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=92.04 E-value=1 Score=39.21 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=48.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcc-eeCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~-v~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
+||+|+| .|.-++.+++.+.+. +..+..++++...|. ..... ..-+. -+.|.+.+++ +++..++|+++-..
T Consensus 1 ~kiliiG-~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 72 (423)
T TIGR00877 1 MKVLVIG-NGGREHALAWKLAQS-PLVKYVYVAPGNAGT--ARLAK---NKNVAISITDIEALVE-FAKKKKIDLAVIGP 72 (423)
T ss_pred CEEEEEC-CChHHHHHHHHHHhC-CCccEEEEECCCHHH--hhhcc---cccccCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 5999999 599999999999875 333333344322121 11100 00111 1256665442 23346888877333
Q ss_pred CchhHHHHHHHHHHcCCcEE
Q 031216 115 DASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV 134 (163)
.-......+..+.+.|++++
T Consensus 73 e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 73 EAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred chHHHHHHHHHHHHCCCeEE
Confidence 21112345566667788753
No 474
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.00 E-value=0.47 Score=39.83 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
+..||.|+| +|.+|+.++..+.. .++.=+-+++++
T Consensus 126 ~~k~vlIlG-aGGaaraia~aL~~-~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLG-AGGAGAAVAHALLT-LGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEEC-CcHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 346899999 59999999999875 566445577764
No 475
>PRK12743 oxidoreductase; Provisional
Probab=91.98 E-value=1.5 Score=35.07 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=27.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
-+|.|.|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus 3 k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~ 35 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQ-QGFDIGITWHS 35 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCC
Confidence 4799999999999999999985 58888765543
No 476
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.95 E-value=2 Score=36.48 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=40.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhc-----cCCC--CCCcceeCCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-----DMEQ--PLEIPVMSDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~-----g~~~--~~gi~v~~~l~ell~~~~~~~~~D 108 (163)
+||+|+| .|.||..++..+....-.+ +-++|.... ...++.. +... ...+..++|+++ + .+.|
T Consensus 2 ~KV~VIG-aG~vG~~iA~~la~~g~~~-VvlvDi~~~-l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~------~~aD 71 (305)
T TIGR01763 2 KKISVIG-AGFVGATTAFRLAEKELAD-LVLLDVVEG-IPQGKALDMYEASPVGGFDTKVTGTNNYAD-T------ANSD 71 (305)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCCe-EEEEeCCCC-hhHHHHHhhhhhhhccCCCcEEEecCCHHH-h------CCCC
Confidence 5899999 5999999999887543236 556784211 1111111 0000 112344578877 4 3899
Q ss_pred EEEEcc
Q 031216 109 VVIDFT 114 (163)
Q Consensus 109 VVIDfT 114 (163)
+||.+.
T Consensus 72 iVIita 77 (305)
T TIGR01763 72 IVVITA 77 (305)
T ss_pred EEEEcC
Confidence 988543
No 477
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=91.94 E-value=0.48 Score=42.02 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=48.7
Q ss_pred eeEEEEcCCCHHHHHHHH--HHH---hcCCcEEEEEEecCCC-----Ccchhhhcc-CCCCCCcceeCCHHHHHhccccc
Q 031216 36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHSV-----GEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQS 104 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~--~i~---~~~~~eLvgvid~~~~-----g~~~~~l~g-~~~~~gi~v~~~l~ell~~~~~~ 104 (163)
+||+|+|+ |.||....- .+. ..++.+|+ ++|.... ..+...... ......+..++|+++++.
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~----- 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD----- 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc-----
Confidence 58999995 999987433 343 35555665 5775321 111111111 001234556789988885
Q ss_pred CCccEEEEccCchhHH---HHHHHHHHcCCc
Q 031216 105 KARAVVIDFTDASTVY---DNVKQATAFGMR 132 (163)
Q Consensus 105 ~~~DVVIDfT~p~~~~---~~~~~al~~G~~ 132 (163)
.+|+||....+.... ..-+..+++|+-
T Consensus 74 -~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~ 103 (423)
T cd05297 74 -GADFVINTIQVGGHEYTETDFEIPEKYGYY 103 (423)
T ss_pred -CCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence 899999544322221 222345666654
No 478
>PLN02602 lactate dehydrogenase
Probab=91.90 E-value=0.76 Score=39.95 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=41.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhccCCCCCCccee--CCHHHHHhcccccCCcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARA 108 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~D 108 (163)
.||+|+|+ |++|..++-.+...+-..=..++|... .| .|+.+..... . ...++ .++++ + .++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~-~-~~~i~~~~dy~~-~------~daD 107 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL-P-RTKILASTDYAV-T------AGSD 107 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC-C-CCEEEeCCCHHH-h------CCCC
Confidence 69999995 999999998887554443344788432 12 2333322211 1 13443 46666 3 4899
Q ss_pred EEEEc
Q 031216 109 VVIDF 113 (163)
Q Consensus 109 VVIDf 113 (163)
+||..
T Consensus 108 iVVit 112 (350)
T PLN02602 108 LCIVT 112 (350)
T ss_pred EEEEC
Confidence 98854
No 479
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.86 E-value=0.35 Score=37.70 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.9
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
+.+|.|+|++|.+|+.+++.+. ..+.+++.+.++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~-~~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLA-RAGADVVVHYRS 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCC
Confidence 4689999999999999999987 467787665554
No 480
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=91.85 E-value=1.9 Score=35.42 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=41.1
Q ss_pred EEEEcCCCHHHHHHHHHHHhcC--C-cEEEEEEecCC---CC--cchhhhccCCCCCCcceeCCHHHHHhcccccCCccE
Q 031216 38 VIINGAVKEIGRAAVIAVTKAR--G-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (163)
Q Consensus 38 V~VvGa~G~mG~~i~~~i~~~~--~-~eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~~~l~ell~~~~~~~~~DV 109 (163)
|+|+|+.|.||..++..+...+ . .+|+ ++|... .+ .++.+.........+..++|+++.+. ++|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~-L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELV-LYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEE-EEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCE
Confidence 5899976999999999887554 2 3444 678432 11 22222221100124445677777774 8999
Q ss_pred EEE
Q 031216 110 VID 112 (163)
Q Consensus 110 VID 112 (163)
||.
T Consensus 74 Vv~ 76 (263)
T cd00650 74 VII 76 (263)
T ss_pred EEE
Confidence 885
No 481
>PRK08017 oxidoreductase; Provisional
Probab=91.83 E-value=4.4 Score=31.99 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=25.4
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
+|.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~-~g~~v~~~~ 33 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKR-RGYRVLAAC 33 (256)
T ss_pred EEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 699999999999999999974 578876543
No 482
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.79 E-value=0.81 Score=41.70 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=25.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
=+|.|+| +|++|+.+++.+. ..+.+++ ++|.+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~-~~g~~vv-vId~d 449 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLL-AAGIPLV-VIETS 449 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHH-HCCCCEE-EEECC
Confidence 5799999 6999999999987 4567776 56753
No 483
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=91.79 E-value=1.1 Score=44.13 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=58.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhccCCCCCCccee-CC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVM-SD 93 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~-----g-------~~~~---------~l~g~~~~~gi~v~-~~ 93 (163)
-||.|+| +|+.|.++++.+. ..|+.=+.++|.... + .+++ .+..+.....+.++ .+
T Consensus 25 s~VLIiG-~gGLG~EiaKnL~-laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 102 (1008)
T TIGR01408 25 SNVLISG-MGGLGLEIAKNLV-LAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP 102 (1008)
T ss_pred CcEEEEC-CCHHHHHHHHHHH-HcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence 6899999 5999999999997 689988888994311 1 0111 00001001112222 23
Q ss_pred H-HHHHhcccccCCccEEEEccCchhH-HHHHHHHHHcC--CcEEEeCC
Q 031216 94 L-TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFG--MRSVVYVP 138 (163)
Q Consensus 94 l-~ell~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G--~~vVigtt 138 (163)
+ ++.+ .++|+||+.+.+-.. ...-..|.++| +++|.+-+
T Consensus 103 l~~e~l------~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~ 145 (1008)
T TIGR01408 103 FNEEFL------DKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADV 145 (1008)
T ss_pred CCHHHH------cCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEee
Confidence 3 3344 389999987654443 56668888888 77776544
No 484
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.77 E-value=1 Score=38.59 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=25.5
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
+||+|+|++|++|..++-.+...+-..=...+|..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 59999997799999999887655433333367743
No 485
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=91.76 E-value=1.8 Score=38.66 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=27.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
-+|.|+| +|.+|.++++.+. .+|+.=.-++|.
T Consensus 21 s~VlliG-~gglGsEilKNLv-L~GIg~~tIvD~ 52 (425)
T cd01493 21 AHVCLLN-ATATGTEILKNLV-LPGIGSFTIVDG 52 (425)
T ss_pred CeEEEEc-CcHHHHHHHHHHH-HcCCCeEEEECC
Confidence 5899999 5999999999987 789977778884
No 486
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.74 E-value=0.46 Score=41.43 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=29.5
Q ss_pred ccCCCCCCCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 031216 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (163)
Q Consensus 27 ~~~~~~~~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~ 70 (163)
...-+.-.+.||.|+| .|.+|+..++.+... ++++ -++|++
T Consensus 159 ~~~~~~l~~~~VlViG-aG~vG~~aa~~a~~l-Ga~V-~v~d~~ 199 (370)
T TIGR00518 159 LGGVPGVEPGDVTIIG-GGVVGTNAAKMANGL-GATV-TILDIN 199 (370)
T ss_pred ecCCCCCCCceEEEEc-CCHHHHHHHHHHHHC-CCeE-EEEECC
Confidence 3343444567899999 599999999998754 6774 457754
No 487
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.73 E-value=0.74 Score=39.26 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=41.2
Q ss_pred CeeEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhccCCCCCCccee-CCHHHHHhcccccCCc
Q 031216 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKAR 107 (163)
Q Consensus 35 ~irV~VvGa~G~mG~~i~~~i~~~~~~-eLvgvid~~~---~g--~~~~~l~g~~~~~gi~v~-~~l~ell~~~~~~~~~ 107 (163)
..||+|+|+ |.+|..++-.+...+-. ||+ ++|... .| .|+.+..... ..+.++ +++++ + .++
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~-L~D~~~~~~~g~~~Dl~~~~~~~--~~~~i~~~~~~~-~------~~a 74 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELV-IIDINKEKAEGDAMDLSHAVPFT--SPTKIYAGDYSD-C------KDA 74 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCCchhHHHHHHHHhhcccc--CCeEEEeCCHHH-h------CCC
Confidence 469999996 99999999988755544 444 788532 12 2333322111 134444 45544 4 489
Q ss_pred cEEEEc
Q 031216 108 AVVIDF 113 (163)
Q Consensus 108 DVVIDf 113 (163)
|+||..
T Consensus 75 divIit 80 (315)
T PRK00066 75 DLVVIT 80 (315)
T ss_pred CEEEEe
Confidence 998854
No 488
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.71 E-value=2.4 Score=32.88 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=26.0
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.++.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus 8 k~vlItGatg~iG~~la~~l~~-~G~~v~~~~ 38 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAA-RGARVALIG 38 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHH-CCCeEEEEe
Confidence 5799999999999999999974 588876544
No 489
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.68 E-value=1 Score=38.05 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=49.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~--~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVI 111 (163)
-+|+|.|+ |.+|...++.+. ..+.+++++..+. ....+..+-+|.. .+ .+ .++++... ...+|+||
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~~~~~~~~~~~~~~~~~Ga~---~v-~~~~~~~~~~~~----~~~~d~vi 243 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVLNRRDPPDPKADIVEELGAT---YV-NSSKTPVAEVKL----VGEFDLII 243 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCE---Ee-cCCccchhhhhh----cCCCCEEE
Confidence 47999995 999999887765 5678877644221 1111111111210 01 11 12222111 14799999
Q ss_pred EccCchhH-HHHHHHHHHcCCcEEEeCC
Q 031216 112 DFTDASTV-YDNVKQATAFGMRSVVYVP 138 (163)
Q Consensus 112 DfT~p~~~-~~~~~~al~~G~~vVigtt 138 (163)
|++-.... ...+......|.-+++|.+
T Consensus 244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 244 EATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 99864334 4444444455665567764
No 490
>PRK06523 short chain dehydrogenase; Provisional
Probab=91.61 E-value=3.2 Score=32.99 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=26.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~ 40 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLE-AGARVVTTA 40 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHH-CCCEEEEEe
Confidence 5799999999999999999985 588877654
No 491
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=91.54 E-value=0.88 Score=37.23 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=50.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcceeC--CHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~~--~l~ell~~~~~~~~~DVVIDf 113 (163)
-+|.|.|++|.+|...++.+. .-+.++..+.++...-..+.+ .|.. .+.-+. ++.+.+.+......+|+++|+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~-~~G~~v~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 215 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAA-ARGINVINLVRRDAGVAELRA-LGIG---PVVSTEQPGWQDKVREAAGGAPISVALDS 215 (324)
T ss_pred CEEEEcccccHHHHHHHHHHH-HCCCeEEEEecCHHHHHHHHh-cCCC---EEEcCCCchHHHHHHHHhCCCCCcEEEEC
Confidence 579999989999999888765 668898877774321111111 1110 011111 222222111112479999998
Q ss_pred cCchhHHHHHHHHHHc-CCcEEEeC
Q 031216 114 TDASTVYDNVKQATAF-GMRSVVYV 137 (163)
Q Consensus 114 T~p~~~~~~~~~al~~-G~~vVigt 137 (163)
+-..... .+..++.. |.=+.+|.
T Consensus 216 ~g~~~~~-~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 216 VGGKLAG-ELLSLLGEGGTLVSFGS 239 (324)
T ss_pred CCChhHH-HHHHhhcCCcEEEEEec
Confidence 7554433 33444444 44333543
No 492
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.54 E-value=2.6 Score=33.61 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=49.2
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCcce-eCCHHHHHhcccccCCccEEEEcc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v-~~~l~ell~~~~~~~~~DVVIDfT 114 (163)
.||.|+|+ |.+|...++.+.+ .+.+++ ++++.. ...+.++.. ...+.. ...+++..- ..+|+||-+|
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l-----~~adlViaaT 78 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI-----VDAFLVIAAT 78 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc-----CCceEEEEcC
Confidence 58999994 9999999998875 457776 445432 122333321 112221 123333221 3889988777
Q ss_pred CchhHHHHHHHHHHcCCcEE
Q 031216 115 DASTVYDNVKQATAFGMRSV 134 (163)
Q Consensus 115 ~p~~~~~~~~~al~~G~~vV 134 (163)
..+.....+....+.++.+-
T Consensus 79 ~d~elN~~i~~~a~~~~lvn 98 (202)
T PRK06718 79 NDPRVNEQVKEDLPENALFN 98 (202)
T ss_pred CCHHHHHHHHHHHHhCCcEE
Confidence 65555444433336676544
No 493
>PRK12744 short chain dehydrogenase; Provisional
Probab=91.52 E-value=2.6 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=26.4
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
.++.|+|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~-~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAA-QGAKAVAIHY 40 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHH-CCCcEEEEec
Confidence 5799999999999999999974 6888665443
No 494
>PRK05854 short chain dehydrogenase; Provisional
Probab=91.51 E-value=1.2 Score=37.29 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid 68 (163)
+...+.|+|+++.+|+.+++.+.+ .+.+++.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R 46 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVR 46 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeC
Confidence 446899999999999999999984 6788876543
No 495
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.50 E-value=1 Score=35.74 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.8
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgv 66 (163)
.++.|+|++|.+|+.+++.+. ..+.+++.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~-~~G~~V~~~ 35 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAA-RAGADVVLA 35 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHH-HcCCEEEEE
Confidence 579999999999999999998 467887754
No 496
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.47 E-value=0.79 Score=37.64 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=49.6
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhccCCCCCCccee--CCHHHHHhcccccCCccEEEEc
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF 113 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~~~~g~~~~~l~g~~~~~gi~v~--~~l~ell~~~~~~~~~DVVIDf 113 (163)
-+|.|.|++|.+|...++.+. ..++++++..++...-..+.+ .|. ..+.-+ .++.+.+.+.. ...+|+++|+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~-~~G~~vi~~~~s~~~~~~l~~-~Ga---~~vi~~~~~~~~~~v~~~~-~~gvd~vld~ 218 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAK-IKGCKVIGCAGSDDKVAWLKE-LGF---DAVFNYKTVSLEEALKEAA-PDGIDCYFDN 218 (329)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHH-cCC---CEEEeCCCccHHHHHHHHC-CCCcEEEEEC
Confidence 479999999999999888776 568888766553211011111 111 011111 13322222111 1468999998
Q ss_pred cCchhHHHHHHHHH-HcCCcEEEe
Q 031216 114 TDASTVYDNVKQAT-AFGMRSVVY 136 (163)
Q Consensus 114 T~p~~~~~~~~~al-~~G~~vVig 136 (163)
+-.... +....++ ..|.-+.+|
T Consensus 219 ~g~~~~-~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 VGGEFS-STVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCHHHH-HHHHHhhccCCEEEEEc
Confidence 765433 4444444 444444454
No 497
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=91.41 E-value=0.62 Score=40.75 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe---------cCCCC--cchhhh-----------ccCCCCCCccee
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---------SHSVG--EDIGMV-----------CDMEQPLEIPVM 91 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid---------~~~~g--~~~~~l-----------~g~~~~~gi~v~ 91 (163)
+++||.++| +|+=|+.+++.+.+.-. +.- ..+ -...| +.+.+. .|+.-+.++...
T Consensus 20 ~~~kV~ivG-sGnWGsaiaki~~~n~~-~~~-~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv 96 (372)
T KOG2711|consen 20 DPLKVCIVG-SGNWGSAIAKIVGENVK-EFP-IFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAV 96 (372)
T ss_pred CceEEEEEc-cChHHHHHHHHHhhhhh-hcc-ccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEec
Confidence 479999999 79999999988764221 110 111 01122 111121 122234556667
Q ss_pred CCHHHHHhcccccCCccEEEEccCchhHH----HHHHHHHHcCCcEEEeCCCCC
Q 031216 92 SDLTMVLGSISQSKARAVVIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQ 141 (163)
Q Consensus 92 ~~l~ell~~~~~~~~~DVVIDfT~p~~~~----~~~~~al~~G~~vVigttg~~ 141 (163)
+|+.++.. ++|++| |..|+... +.+.-.++.+.+.|+-+-|++
T Consensus 97 ~dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 97 PDLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred chHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 89988874 899998 77776653 455667788888887666764
No 498
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.35 E-value=1 Score=35.55 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.7
Q ss_pred eeEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 031216 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (163)
Q Consensus 36 irV~VvGa~G~mG~~i~~~i~~~~~~eLvgvi 67 (163)
.++.|+|++|.+|+.+++.+.+. +.+++.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~-g~~v~~~~ 33 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAK-GRDLALCA 33 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCEEEEEe
Confidence 46999999999999999999854 67876543
No 499
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.34 E-value=0.28 Score=44.16 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=45.7
Q ss_pred CCeeEEEEcCCCHHHHHHHHHHHh------cCCcEEEEEEecC-C----CC--cchhhhc-cCCCCCCcceeCCHHHHHh
Q 031216 34 SNIKVIINGAVKEIGRAAVIAVTK------ARGMEVAGAIDSH-S----VG--EDIGMVC-DMEQPLEIPVMSDLTMVLG 99 (163)
Q Consensus 34 ~~irV~VvGa~G~mG~~i~~~i~~------~~~~eLvgvid~~-~----~g--~~~~~l~-g~~~~~gi~v~~~l~ell~ 99 (163)
.++||.|.||.|.+|-.++-.|.+ ...+.|+ ++|.+ . .| +|+.+-+ .+ ..++.++++..+.+.
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~-LlDi~~~~~~l~G~amDL~D~a~pl--l~~v~i~~~~~ea~~ 198 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIH-LLDSPENLEKLKGLVMEVEDLAFPL--LRGISVTTDLDVAFK 198 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEE-EEcCCCchhhHHHHHHHHHHhHHhh--cCCcEEEECCHHHhC
Confidence 369999999999999999998875 3444555 56742 1 12 2222221 11 114667767777774
Q ss_pred cccccCCccEEEEcc
Q 031216 100 SISQSKARAVVIDFT 114 (163)
Q Consensus 100 ~~~~~~~~DVVIDfT 114 (163)
++|+||...
T Consensus 199 ------daDvvIita 207 (452)
T cd05295 199 ------DAHVIVLLD 207 (452)
T ss_pred ------CCCEEEECC
Confidence 999988543
No 500
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=91.30 E-value=1.3 Score=35.61 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=26.7
Q ss_pred eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 031216 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (163)
Q Consensus 37 rV~VvGa~G~mG~~i~~~i~~~~~~eLvgvid~ 69 (163)
-+.|.|++|.+|+.+++.+. ..+.+++...++
T Consensus 3 ~~lITGas~gIG~~~a~~l~-~~G~~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALH-QEGYRVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHH-hCCCeEEEEcCC
Confidence 37899999999999999997 478898866543
Done!