Query 031218
Match_columns 163
No_of_seqs 228 out of 1464
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 1.1E-29 2.5E-34 184.5 12.6 104 53-162 31-135 (142)
2 COG0071 IbpA Molecular chapero 100.0 4.9E-28 1.1E-32 177.4 14.7 109 52-162 38-146 (146)
3 PRK10743 heat shock protein Ib 100.0 8.8E-28 1.9E-32 174.0 14.1 103 54-162 34-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 2E-27 4.4E-32 161.4 12.2 92 56-147 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 2.6E-25 5.6E-30 153.3 13.7 102 58-162 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 3.7E-25 8.1E-30 150.4 12.2 91 55-147 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 2.1E-24 4.5E-29 146.1 13.0 89 55-147 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 3.7E-23 8E-28 138.8 11.6 82 58-147 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.7E-22 3.7E-27 134.7 11.3 82 58-147 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 2.5E-22 5.3E-27 134.2 11.4 82 59-148 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 1.5E-22 3.3E-27 134.2 9.6 79 58-147 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 9.6E-22 2.1E-26 131.9 11.1 82 57-146 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 1.6E-21 3.4E-26 130.0 11.1 81 59-147 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 1.4E-21 3.1E-26 131.3 11.0 83 61-147 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 4.1E-21 8.9E-26 128.0 11.8 88 58-147 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 5.6E-21 1.2E-25 128.2 10.9 81 62-147 6-87 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1.8E-20 3.8E-25 124.8 11.1 79 60-146 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.5E-20 3.2E-25 125.3 9.6 77 63-147 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 3.3E-19 7.1E-24 136.5 7.4 115 48-163 78-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 2E-17 4.4E-22 111.7 9.9 81 59-147 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 3.3E-16 7.1E-21 117.5 13.4 99 55-162 63-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2.2E-14 4.8E-19 92.4 10.2 80 59-147 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 9.5E-12 2.1E-16 81.3 8.8 70 59-149 1-70 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 4.9E-10 1.1E-14 83.6 10.4 79 51-149 88-169 (177)
25 cd06463 p23_like Proteins cont 99.0 3.4E-09 7.3E-14 69.2 9.0 75 59-149 1-75 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.6E-08 5.7E-13 65.6 7.7 76 58-149 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.8E-06 3.9E-11 55.6 11.5 77 55-147 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 9.6E-06 2.1E-10 56.2 9.9 78 55-149 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.1 1.5E-05 3.2E-10 65.2 8.9 65 63-146 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.1 3E-05 6.4E-10 51.2 8.3 76 58-149 1-76 (84)
31 cd06488 p23_melusin_like p23_l 97.9 0.00015 3.3E-09 48.3 9.4 78 56-149 2-79 (87)
32 cd06468 p23_CacyBP p23_like do 97.9 0.00026 5.6E-09 47.4 10.1 78 56-149 3-84 (92)
33 cd06467 p23_NUDC_like p23_like 97.8 0.00026 5.6E-09 46.5 8.7 73 58-149 2-76 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00036 7.9E-09 46.2 8.8 74 57-149 1-76 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.5 0.0018 3.9E-08 43.9 9.4 76 54-149 5-82 (93)
36 cd00237 p23 p23 binds heat sho 97.4 0.0037 8E-08 43.3 10.4 77 55-149 2-78 (106)
37 PLN03088 SGT1, suppressor of 97.0 0.0041 8.9E-08 51.7 8.7 80 54-149 156-235 (356)
38 KOG1309 Suppressor of G2 allel 97.0 0.0028 6E-08 47.7 6.8 80 54-149 3-82 (196)
39 cd06490 p23_NCB5OR p23_like do 96.5 0.081 1.8E-06 35.1 10.1 75 57-149 1-79 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.9 0.11 2.4E-06 34.5 8.5 73 58-149 2-78 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.9 0.18 3.9E-06 34.6 9.5 80 54-149 4-86 (102)
42 KOG2265 Nuclear distribution p 88.8 4.8 0.0001 30.3 8.4 80 51-149 15-96 (179)
43 PF14913 DPCD: DPCD protein fa 88.0 6.6 0.00014 30.0 8.7 81 50-149 82-170 (194)
44 KOG3158 HSP90 co-chaperone p23 86.0 3.9 8.5E-05 30.8 6.5 79 53-149 6-84 (180)
45 KOG1667 Zn2+-binding protein M 81.8 11 0.00024 30.2 7.7 86 49-149 209-294 (320)
46 cd06482 ACD_HspB10 Alpha cryst 81.0 3.8 8.2E-05 27.2 4.3 33 116-149 9-41 (87)
47 PF13349 DUF4097: Domain of un 79.9 20 0.00043 25.7 9.2 83 55-145 66-148 (166)
48 cd06470 ACD_IbpA-B_like Alpha- 76.9 9.4 0.0002 25.1 5.3 33 116-149 12-44 (90)
49 cd06477 ACD_HspB3_Like Alpha c 76.4 6.5 0.00014 25.8 4.3 33 116-149 8-40 (83)
50 cd06476 ACD_HspB2_like Alpha c 76.1 6.3 0.00014 25.8 4.2 33 116-149 8-40 (83)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 75.3 8 0.00017 25.1 4.6 33 116-149 8-40 (83)
52 PF08308 PEGA: PEGA domain; I 73.6 15 0.00033 22.6 5.5 41 56-96 26-67 (71)
53 cd06497 ACD_alphaA-crystallin_ 73.5 8.6 0.00019 25.2 4.4 33 116-149 11-43 (86)
54 PRK10743 heat shock protein Ib 73.2 13 0.00029 26.7 5.6 32 117-149 47-78 (137)
55 cd06479 ACD_HspB7_like Alpha c 72.0 9.4 0.0002 24.9 4.2 33 116-149 9-41 (81)
56 PF00011 HSP20: Hsp20/alpha cr 71.6 14 0.00029 24.5 5.1 36 64-100 55-91 (102)
57 cd06471 ACD_LpsHSP_like Group 71.4 8 0.00017 25.4 3.9 30 64-94 62-91 (93)
58 COG5091 SGT1 Suppressor of G2 71.3 2.9 6.3E-05 34.0 2.0 86 49-149 171-256 (368)
59 cd06526 metazoan_ACD Alpha-cry 69.5 11 0.00023 24.3 4.1 33 116-149 8-40 (83)
60 cd06480 ACD_HspB8_like Alpha-c 68.3 13 0.00028 24.9 4.3 30 64-94 58-89 (91)
61 cd06481 ACD_HspB9_like Alpha c 67.6 16 0.00035 24.0 4.7 33 116-149 8-40 (87)
62 cd06498 ACD_alphaB-crystallin_ 67.0 12 0.00026 24.4 4.0 33 116-149 8-40 (84)
63 PRK11597 heat shock chaperone 66.6 21 0.00046 25.9 5.5 32 117-149 45-76 (142)
64 cd06475 ACD_HspB1_like Alpha c 65.4 17 0.00038 23.7 4.5 33 116-149 11-43 (86)
65 cd06472 ACD_ScHsp26_like Alpha 65.3 13 0.00028 24.4 3.9 31 63-94 59-90 (92)
66 PF01954 DUF104: Protein of un 64.6 6.8 0.00015 24.2 2.2 17 130-146 3-19 (60)
67 PF12992 DUF3876: Domain of un 62.2 33 0.00072 23.2 5.5 39 54-93 25-68 (95)
68 cd06464 ACD_sHsps-like Alpha-c 59.2 24 0.00051 22.2 4.3 33 116-149 8-40 (88)
69 cd06469 p23_DYX1C1_like p23_li 57.4 37 0.00081 21.1 4.9 33 64-97 36-69 (78)
70 PF04972 BON: BON domain; Int 57.0 23 0.0005 21.2 3.8 25 73-98 12-36 (64)
71 COG0071 IbpA Molecular chapero 56.4 37 0.0008 24.4 5.3 33 65-98 101-134 (146)
72 KOG3591 Alpha crystallins [Pos 55.1 17 0.00036 27.4 3.4 30 70-99 121-151 (173)
73 KOG3260 Calcyclin-binding prot 53.0 56 0.0012 25.0 5.8 77 57-149 77-154 (224)
74 PRK05518 rpl6p 50S ribosomal p 52.4 81 0.0018 23.8 6.7 46 76-146 12-57 (180)
75 TIGR03653 arch_L6P archaeal ri 49.1 1.1E+02 0.0023 22.9 6.9 46 77-147 7-52 (170)
76 PRK10568 periplasmic protein; 46.4 34 0.00073 26.2 3.9 25 73-98 73-97 (203)
77 TIGR03654 L6_bact ribosomal pr 46.0 1.1E+02 0.0024 22.8 6.6 44 77-146 11-54 (175)
78 PF13349 DUF4097: Domain of un 45.6 89 0.0019 22.2 6.0 16 56-71 86-101 (166)
79 cd06467 p23_NUDC_like p23_like 44.1 80 0.0017 19.8 5.1 30 117-146 10-39 (85)
80 PF14814 UB2H: Bifunctional tr 44.0 67 0.0015 20.9 4.6 42 104-145 30-73 (85)
81 PRK05498 rplF 50S ribosomal pr 43.3 1.2E+02 0.0025 22.8 6.3 44 77-146 12-55 (178)
82 PRK14290 chaperone protein Dna 42.6 1.4E+02 0.003 25.0 7.3 30 120-149 277-306 (365)
83 cd06494 p23_NUDCD2_like p23-li 42.4 55 0.0012 21.8 4.0 30 116-145 16-45 (93)
84 KOG3413 Mitochondrial matrix p 41.1 13 0.00029 27.2 0.9 22 125-146 67-88 (156)
85 CHL00140 rpl6 ribosomal protei 38.7 1.2E+02 0.0026 22.7 5.8 44 77-146 12-55 (178)
86 PTZ00027 60S ribosomal protein 38.6 1.4E+02 0.003 22.8 6.2 49 76-147 12-60 (190)
87 COG4004 Uncharacterized protei 38.2 91 0.002 21.0 4.4 34 57-95 26-59 (96)
88 cd02178 GH16_beta_agarase Beta 37.7 1.4E+02 0.0031 23.4 6.4 44 82-126 60-110 (258)
89 cd00503 Frataxin Frataxin is a 36.6 39 0.00084 23.2 2.6 18 130-147 28-45 (105)
90 PF03983 SHD1: SLA1 homology d 34.9 50 0.0011 21.1 2.7 34 58-91 14-47 (70)
91 PRK04517 hypothetical protein; 34.8 2.1E+02 0.0046 22.1 7.0 20 130-149 83-104 (216)
92 PF01491 Frataxin_Cyay: Fratax 34.6 57 0.0012 22.4 3.2 19 130-148 30-48 (109)
93 PRK00446 cyaY frataxin-like pr 34.1 44 0.00096 22.9 2.6 17 132-148 29-45 (105)
94 PF13620 CarboxypepD_reg: Carb 33.9 54 0.0012 20.4 2.9 29 64-92 48-77 (82)
95 TIGR03421 FeS_CyaY iron donor 33.2 41 0.00088 23.0 2.3 17 131-147 26-42 (102)
96 cd02175 GH16_lichenase lichena 32.9 1.4E+02 0.003 22.6 5.5 47 77-126 31-80 (212)
97 PRK11198 LysM domain/BON super 32.4 68 0.0015 23.2 3.5 25 73-98 38-62 (147)
98 cd08023 GH16_laminarinase_like 32.2 2.3E+02 0.005 21.6 6.8 50 74-126 34-91 (235)
99 PF14730 DUF4468: Domain of un 30.5 1.6E+02 0.0034 19.2 6.2 17 131-147 69-85 (91)
100 PTZ00179 60S ribosomal protein 28.3 2.3E+02 0.0049 21.6 5.8 47 77-146 12-58 (189)
101 PF02736 Myosin_N: Myosin N-te 28.0 84 0.0018 17.5 2.7 20 74-93 20-39 (42)
102 PF07873 YabP: YabP family; I 27.8 63 0.0014 19.9 2.3 23 74-97 22-44 (66)
103 PF05455 GvpH: GvpH; InterPro 27.3 2.8E+02 0.006 21.0 6.3 38 61-99 133-170 (177)
104 KOG3247 Uncharacterized conser 27.0 33 0.00072 29.5 1.2 75 54-149 3-80 (466)
105 TIGR03422 mito_frataxin fratax 27.0 50 0.0011 22.3 1.8 16 133-148 30-45 (97)
106 PF08845 SymE_toxin: Toxin Sym 26.5 1.1E+02 0.0023 18.6 3.1 22 71-93 34-56 (57)
107 cd02177 GH16_kappa_carrageenas 26.2 3.4E+02 0.0075 21.7 7.0 43 82-125 46-103 (269)
108 COG2880 Uncharacterized protei 23.7 6.8 0.00015 24.8 -2.7 13 131-143 6-18 (67)
109 PRK14299 chaperone protein Dna 23.2 3.4E+02 0.0073 21.9 6.4 23 127-149 215-237 (291)
110 TIGR02856 spore_yqfC sporulati 22.7 74 0.0016 20.9 2.0 42 54-97 19-62 (85)
111 PF13014 KH_3: KH domain 22.7 1.1E+02 0.0023 16.8 2.4 21 142-163 23-43 (43)
112 PRK14284 chaperone protein Dna 22.6 4.7E+02 0.01 22.0 9.1 30 120-149 285-316 (391)
113 PF15631 Imm-NTF2-2: NTF2 fold 21.5 2.2E+02 0.0048 17.9 5.7 41 53-93 20-63 (66)
114 TIGR02892 spore_yabP sporulati 21.3 84 0.0018 20.7 2.0 21 75-96 22-42 (85)
115 cd02182 GH16_Strep_laminarinas 21.1 1.7E+02 0.0037 23.0 4.2 18 77-97 45-63 (259)
116 PLN02786 isochorismate synthas 20.9 87 0.0019 27.9 2.6 24 50-73 188-211 (533)
117 cd02180 GH16_fungal_KRE6_gluca 20.8 2.8E+02 0.006 22.6 5.4 47 76-125 39-90 (295)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=1.1e-29 Score=184.53 Aligned_cols=104 Identities=22% Similarity=0.355 Sum_probs=92.0
Q ss_pred ccceeEEEE-CCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCC
Q 031218 53 VNTRVDWKE-TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDR 131 (163)
Q Consensus 53 ~~p~~di~e-~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 131 (163)
..|++||+| ++++|+|.++|||++++||+|.+++ +.|+|+|++.. +.++.+|+++|+.+|.|+|+|.||++||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~--~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ--PEKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc--ccCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 459999998 5779999999999999999999986 59999999764 235678999999999999999999999998
Q ss_pred eEEEEeCCEEEEEEeCcCcccCCcceEEecc
Q 031218 132 IKASMENGVLTVTVPKAEEAKKAHVRAIQIS 162 (163)
Q Consensus 132 i~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 162 (163)
+|+|+||||+|++||.. ++..++++|+|+
T Consensus 107 -~A~~~nGVL~I~lPK~~-~~~~~~rkI~I~ 135 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNE-PEAIAPQRIAIS 135 (142)
T ss_pred -cCEEcCCEEEEEEeccC-ccccCCcEEEEC
Confidence 79999999999999985 445567899987
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-28 Score=177.45 Aligned_cols=109 Identities=40% Similarity=0.646 Sum_probs=100.2
Q ss_pred cccceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCC
Q 031218 52 FVNTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDR 131 (163)
Q Consensus 52 ~~~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 131 (163)
.+.|++||++++++|+|.++|||++++||+|++++ +.|+|+|++..+...+...++++|+.+|.|+|+|.||..|+++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 46799999999999999999999999999999996 58999999987666678899999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeCcCcccCCcceEEecc
Q 031218 132 IKASMENGVLTVTVPKAEEAKKAHVRAIQIS 162 (163)
Q Consensus 132 i~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 162 (163)
++|+|+||+|+|++||.. +++.+.++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~-~~~~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAE-PEEKKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEeccc-cccccCceeecC
Confidence 999999999999999998 665567888874
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=8.8e-28 Score=174.00 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=91.5
Q ss_pred cceeEEEE-CCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCe
Q 031218 54 NTRVDWKE-TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRI 132 (163)
Q Consensus 54 ~p~~di~e-~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 132 (163)
.|++||.+ ++++|+|.++|||++++||+|+++++ .|+|+|++..+ .++.+|+++|+.+|+|+|+|.||++||.+
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~-- 108 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADE--QKERTYLYQGIAERNFERKFQLAENIHVR-- 108 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECcc--ccCCcEEEEEEECCEEEEEEECCCCcccC--
Confidence 38999994 89999999999999999999999974 99999997653 35577999999999999999999999999
Q ss_pred EEEEeCCEEEEEEeCcCcccCCcceEEecc
Q 031218 133 KASMENGVLTVTVPKAEEAKKAHVRAIQIS 162 (163)
Q Consensus 133 ~A~~~~GvL~I~~pK~~~~~~~~~~~I~I~ 162 (163)
+|+|+||||+|++||.. ++..++++|+|+
T Consensus 109 ~A~~~dGVL~I~lPK~~-~~~~~~r~I~I~ 137 (137)
T PRK10743 109 GANLVNGLLYIDLERVI-PEAKKPRRIEIN 137 (137)
T ss_pred cCEEeCCEEEEEEeCCC-ccccCCeEEeeC
Confidence 59999999999999976 555667899985
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=2e-27 Score=161.37 Aligned_cols=92 Identities=77% Similarity=1.204 Sum_probs=85.5
Q ss_pred eeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 031218 56 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKAS 135 (163)
Q Consensus 56 ~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 135 (163)
++||+|++++|+|.++|||++++||+|++++++.|+|+|++..+...++..++++|+.+|.|+|+|.||.+|+.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999865589999998766556678899999999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 031218 136 MENGVLTVTVPK 147 (163)
Q Consensus 136 ~~~GvL~I~~pK 147 (163)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=2.6e-25 Score=153.25 Aligned_cols=102 Identities=47% Similarity=0.786 Sum_probs=83.8
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME 137 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 137 (163)
||.|++++|.|.++|||+++++|+|++.++ .|+|+|++. ....+..++..++.++.|.|+|.||.++|.++|+|.|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999975 899999998 33455678888999999999999999999999999999
Q ss_pred CCEEEEEEeCcCcccCCcceEEecc
Q 031218 138 NGVLTVTVPKAEEAKKAHVRAIQIS 162 (163)
Q Consensus 138 ~GvL~I~~pK~~~~~~~~~~~I~I~ 162 (163)
||+|+|++||..+.+....++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999984444477999986
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=3.7e-25 Score=150.39 Aligned_cols=91 Identities=46% Similarity=0.740 Sum_probs=82.3
Q ss_pred ceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeec--CCCCcEEEEeeeeeEEEEEEECCCCcccCCe
Q 031218 55 TRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKE--DKSDTWHRVERSSGMFSRRFRLPENAKMDRI 132 (163)
Q Consensus 55 p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 132 (163)
|++||+|++++|+|.++|||+++++|+|.+.+ +.|+|+|++....+ ..+.+++++|+.+|.|.|+|.|| +++.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 46899999999999999999999999999986 59999999876432 23458999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEeC
Q 031218 133 KASMENGVLTVTVPK 147 (163)
Q Consensus 133 ~A~~~~GvL~I~~pK 147 (163)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=2.1e-24 Score=146.10 Aligned_cols=89 Identities=21% Similarity=0.443 Sum_probs=81.2
Q ss_pred ceeEEEECC-CeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeE
Q 031218 55 TRVDWKETP-EAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIK 133 (163)
Q Consensus 55 p~~di~e~~-~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 133 (163)
|++||+|++ +.|+|.++|||+++++|+|++++ +.|+|+|++..... ++.+|+++|+.+|.|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 679999975 99999999999999999999986 59999999977654 6678999999999999999999999875 9
Q ss_pred EEEeCCEEEEEEeC
Q 031218 134 ASMENGVLTVTVPK 147 (163)
Q Consensus 134 A~~~~GvL~I~~pK 147 (163)
|+|+||+|+|++|+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=3.7e-23 Score=138.82 Aligned_cols=82 Identities=26% Similarity=0.469 Sum_probs=72.6
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE-
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM- 136 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 136 (163)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ++..|+++ .|+|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISR-----EFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHeEEEeC
Confidence 69999999999999999999999999997 4999999875432 33456554 499999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031218 137 ENGVLTVTVPK 147 (163)
Q Consensus 137 ~~GvL~I~~pK 147 (163)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=1.7e-22 Score=134.73 Aligned_cols=82 Identities=24% Similarity=0.443 Sum_probs=71.3
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE-
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM- 136 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 136 (163)
+|.+++++|.|.++|||++++||+|++.+ +.|+|+|++.... ++..++++ .|.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 47889999999999999999999999996 5999999875432 23445554 499999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031218 137 ENGVLTVTVPK 147 (163)
Q Consensus 137 ~~GvL~I~~pK 147 (163)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 79999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=2.5e-22 Score=134.23 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=71.1
Q ss_pred EEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe-
Q 031218 59 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME- 137 (163)
Q Consensus 59 i~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 137 (163)
+.+++++|.|.++|||++++||+|++.+ +.|+|+|++.... ++..+++ +.|+|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFIS-----REFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEE-----EEEEEEEECCCCCChHHcEEEeCC
Confidence 6788999999999999999999999996 5999999875443 2344554 35999999999999999999995
Q ss_pred CCEEEEEEeCc
Q 031218 138 NGVLTVTVPKA 148 (163)
Q Consensus 138 ~GvL~I~~pK~ 148 (163)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=1.5e-22 Score=134.17 Aligned_cols=79 Identities=18% Similarity=0.398 Sum_probs=71.0
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE-
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM- 136 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 136 (163)
||.|++++|.|.++|||++++||+|++.+ +.|+|+|+++... + ..+|+|+|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~---~-------~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD---G-------TVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC---C-------CEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68899999999999999999999999996 5999999985332 1 2478999999999999999999997
Q ss_pred eCCEEEEEEeC
Q 031218 137 ENGVLTVTVPK 147 (163)
Q Consensus 137 ~~GvL~I~~pK 147 (163)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.88 E-value=9.6e-22 Score=131.94 Aligned_cols=82 Identities=24% Similarity=0.498 Sum_probs=71.4
Q ss_pred eEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE
Q 031218 57 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM 136 (163)
Q Consensus 57 ~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 136 (163)
.||+|++++|.|.++|||+++++|+|++.+ +.|+|+|++..... ...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 489999999999999999999999999986 59999999864322 22332 35899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 031218 137 E-NGVLTVTVP 146 (163)
Q Consensus 137 ~-~GvL~I~~p 146 (163)
+ ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=1.6e-21 Score=130.00 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=68.9
Q ss_pred EEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe-
Q 031218 59 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME- 137 (163)
Q Consensus 59 i~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 137 (163)
+...+++|.|.++|||++++||+|++.+ +.|+|+|++.... +...++ .+.|+|+|.||.+||+++|+|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~-----~~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFV-----SREFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEE-----EEEEEEEEECCCCCChhhEEEEecC
Confidence 4557889999999999999999999997 4999999985432 223344 346999999999999999999995
Q ss_pred CCEEEEEEeC
Q 031218 138 NGVLTVTVPK 147 (163)
Q Consensus 138 ~GvL~I~~pK 147 (163)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=1.4e-21 Score=131.34 Aligned_cols=83 Identities=27% Similarity=0.519 Sum_probs=72.2
Q ss_pred ECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE-eCC
Q 031218 61 ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM-ENG 139 (163)
Q Consensus 61 e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~~G 139 (163)
+..+.|.|.++||||+++||+|++.+ +.|+|+|++......+...|. +.+|.|+|+|.||.+||.+.|+|.| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45689999999999999999999996 589999998765444444554 3479999999999999999999999 999
Q ss_pred EEEEEEeC
Q 031218 140 VLTVTVPK 147 (163)
Q Consensus 140 vL~I~~pK 147 (163)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=4.1e-21 Score=128.03 Aligned_cols=88 Identities=60% Similarity=0.901 Sum_probs=80.0
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME 137 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 137 (163)
++.|++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++.++.|.|+|.||.++|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 47899999999999999999999999997 58999999986544333 78888999999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 031218 138 NGVLTVTVPK 147 (163)
Q Consensus 138 ~GvL~I~~pK 147 (163)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=5.6e-21 Score=128.21 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=69.7
Q ss_pred CCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCC-E
Q 031218 62 TPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENG-V 140 (163)
Q Consensus 62 ~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~G-v 140 (163)
.++.|+|.++|||++++||+|++.+| .|+|+|++....+..+ ..|+.+|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 46799999999999999999999974 8999999876543222 2378899999999999999999999999666 9
Q ss_pred EEEEEeC
Q 031218 141 LTVTVPK 147 (163)
Q Consensus 141 L~I~~pK 147 (163)
|+|.-|.
T Consensus 81 l~i~~~~ 87 (87)
T cd06482 81 VKIETPC 87 (87)
T ss_pred EEEeeCC
Confidence 9998873
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1.8e-20 Score=124.81 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=68.0
Q ss_pred EECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE-eC
Q 031218 60 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM-EN 138 (163)
Q Consensus 60 ~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~~ 138 (163)
.|++++|.|.++|||++++||+|++.+ +.|+|+|++....+ ...+. .++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 478899999999999999999999997 59999999866432 23332 34899999999999999999998 89
Q ss_pred CEEEEEEe
Q 031218 139 GVLTVTVP 146 (163)
Q Consensus 139 GvL~I~~p 146 (163)
|+|+|+.+
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1.5e-20 Score=125.31 Aligned_cols=77 Identities=34% Similarity=0.594 Sum_probs=67.4
Q ss_pred CCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeC-CEE
Q 031218 63 PEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMEN-GVL 141 (163)
Q Consensus 63 ~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~-GvL 141 (163)
+++|.|.++||||+++||+|++.+ +.|+|+|++..... +. ++.++.|.|+|.||.+||.++++|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 369999999999999999999996 59999999876532 12 2446899999999999999999999988 999
Q ss_pred EEEEeC
Q 031218 142 TVTVPK 147 (163)
Q Consensus 142 ~I~~pK 147 (163)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.3e-19 Score=136.48 Aligned_cols=115 Identities=60% Similarity=0.925 Sum_probs=101.2
Q ss_pred CCcccccceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecC--CCCcEEEEeeeeeEEEEEEECCC
Q 031218 48 EASAFVNTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKED--KSDTWHRVERSSGMFSRRFRLPE 125 (163)
Q Consensus 48 ~~~~~~~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~f~r~~~LP~ 125 (163)
.....+.++.+|.|+.+.|++.+++||+.+++|+|.++++++|+|+|++..+.+. .+..++..|+.+|.|.|++.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 3445556778899999999999999999999999999986689999998876554 55788899999999999999999
Q ss_pred CcccCCeEEEEeCCEEEEEEeCcCcc--cCCcceEEeccC
Q 031218 126 NAKMDRIKASMENGVLTVTVPKAEEA--KKAHVRAIQISG 163 (163)
Q Consensus 126 ~vd~~~i~A~~~~GvL~I~~pK~~~~--~~~~~~~I~I~~ 163 (163)
+++.+.|+|.|+||+|+|++||.. + +.+..+.|.|++
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~-~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLE-PLLKKPKVRQIAISG 196 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEeccc-ccccCCccceeeccC
Confidence 999999999999999999999998 5 566777888865
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.74 E-value=2e-17 Score=111.72 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=69.5
Q ss_pred EEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe-
Q 031218 59 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME- 137 (163)
Q Consensus 59 i~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 137 (163)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|++.....+ ..+. .++|.|+|.||.+||.+.|+|.+.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 4567889999999999999999999996 589999998765422 2232 478999999999999999999996
Q ss_pred CCEEEEEEeC
Q 031218 138 NGVLTVTVPK 147 (163)
Q Consensus 138 ~GvL~I~~pK 147 (163)
||+|+|.+|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.3e-16 Score=117.47 Aligned_cols=99 Identities=24% Similarity=0.475 Sum_probs=84.4
Q ss_pred ceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 031218 55 TRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKA 134 (163)
Q Consensus 55 p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 134 (163)
...++..++++|.+.+|+..|.+++|.|++.+ +.|.|+|++.+.. ++..+. .++|.|+|.||.+||++.|++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v-----~R~F~R~y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYV-----SRSFVRKYLLPEDVDPTSVTS 134 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeE-----EEEEEEEecCCCCCChhheEE
Confidence 45688899999999999999999999999986 5999999987654 333333 347999999999999999999
Q ss_pred EE-eCCEEEEEEeCcCcccCCcceEEecc
Q 031218 135 SM-ENGVLTVTVPKAEEAKKAHVRAIQIS 162 (163)
Q Consensus 135 ~~-~~GvL~I~~pK~~~~~~~~~~~I~I~ 162 (163)
.+ .||+|+|++||.. ......+.|+|+
T Consensus 135 ~LS~dGvLtI~ap~~~-~~~~~er~ipI~ 162 (173)
T KOG3591|consen 135 TLSSDGVLTIEAPKPP-PKQDNERSIPIE 162 (173)
T ss_pred eeCCCceEEEEccCCC-CcCccceEEeEe
Confidence 99 8999999999988 554457888886
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.59 E-value=2.2e-14 Score=92.38 Aligned_cols=80 Identities=55% Similarity=0.895 Sum_probs=70.2
Q ss_pred EEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeC
Q 031218 59 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMEN 138 (163)
Q Consensus 59 i~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 138 (163)
|.++++.|.|.+++||+.+++|.|.+.+ +.|.|+|+...... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999996 58999998764322 33456789999999999999999999999
Q ss_pred CEEEEEEeC
Q 031218 139 GVLTVTVPK 147 (163)
Q Consensus 139 GvL~I~~pK 147 (163)
|+|+|++||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.34 E-value=9.5e-12 Score=81.30 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=63.2
Q ss_pred EEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeC
Q 031218 59 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMEN 138 (163)
Q Consensus 59 i~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 138 (163)
+.++++.+.|.+++||+++++++|++++ +.|.|++ ..|.+.+.||..|+++.++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--------------------~~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--------------------PPYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--------------------CCEEEEEeCcccccccccEEEEeC
Confidence 4678899999999999999999999986 4788876 137888999999999999999999
Q ss_pred CEEEEEEeCcC
Q 031218 139 GVLTVTVPKAE 149 (163)
Q Consensus 139 GvL~I~~pK~~ 149 (163)
|.|.|+++|..
T Consensus 60 ~~l~i~L~K~~ 70 (78)
T cd06469 60 GVLVFTLVKKE 70 (78)
T ss_pred CEEEEEEEeCC
Confidence 99999999987
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.15 E-value=4.9e-10 Score=83.65 Aligned_cols=79 Identities=28% Similarity=0.471 Sum_probs=63.2
Q ss_pred ccccceeEEEECCC-eEEEEEEcCCccCcC-eEEEEeCC-eEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCc
Q 031218 51 AFVNTRVDWKETPE-AHVFKADLPGLRKEE-VKVEVEDD-RVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENA 127 (163)
Q Consensus 51 ~~~~p~~di~e~~~-~~~l~~~lPG~~~ed-i~v~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 127 (163)
....+.+++.+.++ .++|.++|||+++++ |+|.++.+ ..|+|+.. +.+.+++.||..
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~- 147 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP- 147 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-
Confidence 34467899999888 689999999999888 99999842 35555421 136678999977
Q ss_pred ccCCeEEEEeCCEEEEEEeCcC
Q 031218 128 KMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 128 d~~~i~A~~~~GvL~I~~pK~~ 149 (163)
+.+.++|+|+||||+|++-+..
T Consensus 148 ~~e~~~~t~nNgILEIri~~~~ 169 (177)
T PF05455_consen 148 DPEITSATFNNGILEIRIRRTE 169 (177)
T ss_pred ccceeeEEEeCceEEEEEeecC
Confidence 6788999999999999999877
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.02 E-value=3.4e-09 Score=69.23 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=65.1
Q ss_pred EEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeC
Q 031218 59 WKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMEN 138 (163)
Q Consensus 59 i~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 138 (163)
+.++++.+.|.+.+||..+++++|.+.+ +.|.|++.... .+.|...+.|+..|+++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 3578899999999999999999999986 58999976430 1247788999999999999999999
Q ss_pred CEEEEEEeCcC
Q 031218 139 GVLTVTVPKAE 149 (163)
Q Consensus 139 GvL~I~~pK~~ 149 (163)
|.|.|+++|..
T Consensus 65 ~~l~i~L~K~~ 75 (84)
T cd06463 65 RKIEITLKKKE 75 (84)
T ss_pred CEEEEEEEECC
Confidence 99999999987
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.82 E-value=2.6e-08 Score=65.64 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=65.7
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME 137 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 137 (163)
|++++++.+.|.+.+||+.++++.|.+++ +.|.|++... . .+.|...+.|+..|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence 57899999999999999999999999986 5898886632 0 124777889999999999999999
Q ss_pred CCEEEEEEeCcC
Q 031218 138 NGVLTVTVPKAE 149 (163)
Q Consensus 138 ~GvL~I~~pK~~ 149 (163)
+|.|.|+|.|..
T Consensus 65 ~~~vei~L~K~~ 76 (84)
T cd06466 65 PTKVEITLKKAE 76 (84)
T ss_pred CeEEEEEEEcCC
Confidence 999999999987
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.61 E-value=1.8e-06 Score=55.65 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=63.0
Q ss_pred ceeEEEECCCeEEEEEEcCCc--cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCe
Q 031218 55 TRVDWKETPEAHVFKADLPGL--RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRI 132 (163)
Q Consensus 55 p~~di~e~~~~~~l~~~lPG~--~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 132 (163)
|+++|.++++...|.+.+++. +++++.|.+++ +.|.|+...... ..|.-.+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 678999999999999999665 49999999997 588888553221 146677889999999999
Q ss_pred EEEEeCCEEEEEEeC
Q 031218 133 KASMENGVLTVTVPK 147 (163)
Q Consensus 133 ~A~~~~GvL~I~~pK 147 (163)
+..+.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.32 E-value=9.6e-06 Score=56.20 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=65.4
Q ss_pred ceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 031218 55 TRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKA 134 (163)
Q Consensus 55 p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 134 (163)
|+++++++.+.+.|.+.+||+ +++.|.++. +.|.|++.... .+ ..|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~~----------~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----GG----------KKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----CC----------eeEEEEeEhhhhccccccEE
Confidence 578999999999999999998 889999986 58999875321 11 13666789999999999999
Q ss_pred EEeCCEEEEEEeCcC
Q 031218 135 SMENGVLTVTVPKAE 149 (163)
Q Consensus 135 ~~~~GvL~I~~pK~~ 149 (163)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999976
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.14 E-value=1.5e-05 Score=65.17 Aligned_cols=65 Identities=29% Similarity=0.516 Sum_probs=55.7
Q ss_pred CCeEEEEEEcCCc-cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE--eCC
Q 031218 63 PEAHVFKADLPGL-RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM--ENG 139 (163)
Q Consensus 63 ~~~~~l~~~lPG~-~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~--~~G 139 (163)
.+.++|++.|||+ +..+|+|.|.+ +.|.|..... .|.-.+.||..|+.+..+|+| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 5789999999999 77899999997 5788885431 366789999999999999999 568
Q ss_pred EEEEEEe
Q 031218 140 VLTVTVP 146 (163)
Q Consensus 140 vL~I~~p 146 (163)
+|+|++|
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.11 E-value=3e-05 Score=51.23 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=63.1
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEe
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME 137 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 137 (163)
|++++++...|.+.++|+.++++.|.+++ +.|.+++... .+. .|.-.+.|...|+++..+.+..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP-----SGN----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC-----CCC----------cEEEeeecCceecchhcEEEEe
Confidence 57889999999999999999999999987 5898887541 111 3555678999999998888888
Q ss_pred CCEEEEEEeCcC
Q 031218 138 NGVLTVTVPKAE 149 (163)
Q Consensus 138 ~GvL~I~~pK~~ 149 (163)
.+-+.|+|.|..
T Consensus 65 ~~kiei~L~K~~ 76 (84)
T cd06489 65 STKIEIKLKKTE 76 (84)
T ss_pred CcEEEEEEEcCC
Confidence 999999999976
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.95 E-value=0.00015 Score=48.28 Aligned_cols=78 Identities=22% Similarity=0.185 Sum_probs=65.1
Q ss_pred eeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 031218 56 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKAS 135 (163)
Q Consensus 56 ~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 135 (163)
+.|++++++...|.+.+.|+.++++.+.+++ +.|.|+..... + ..|.-.+.|-..|+++..+..
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----N----------KEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----C----------ceEEEEeeccceEChhHcEEE
Confidence 4789999999999999999999999999986 47888754321 1 136667889999999998888
Q ss_pred EeCCEEEEEEeCcC
Q 031218 136 MENGVLTVTVPKAE 149 (163)
Q Consensus 136 ~~~GvL~I~~pK~~ 149 (163)
...+-+.|++.|..
T Consensus 66 v~~~kvei~L~K~~ 79 (87)
T cd06488 66 MLPTKVEIKLRKAE 79 (87)
T ss_pred ecCcEEEEEEEeCC
Confidence 89999999999987
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.91 E-value=0.00026 Score=47.36 Aligned_cols=78 Identities=13% Similarity=0.301 Sum_probs=63.1
Q ss_pred eeEEEECCCeEEEEEEcCCccC---cCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEE-CCCCcccCC
Q 031218 56 RVDWKETPEAHVFKADLPGLRK---EEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFR-LPENAKMDR 131 (163)
Q Consensus 56 ~~di~e~~~~~~l~~~lPG~~~---edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~-LP~~vd~~~ 131 (163)
.++++++++...|.+.+|+..+ +++.|.++. +.|.|++... ++. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence 4689999999999999999987 999999986 4898887421 111 2344454 889999999
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 031218 132 IKASMENGVLTVTVPKAE 149 (163)
Q Consensus 132 i~A~~~~GvL~I~~pK~~ 149 (163)
.+.....+-+.|+|.|..
T Consensus 67 s~~~~~~~ki~i~L~K~~ 84 (92)
T cd06468 67 SSFKVKTDRIVITLAKKK 84 (92)
T ss_pred cEEEEeCCEEEEEEEeCC
Confidence 999999999999999987
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.81 E-value=0.00026 Score=46.53 Aligned_cols=73 Identities=23% Similarity=0.384 Sum_probs=59.3
Q ss_pred EEEECCCeEEEEEEcC-CccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEE
Q 031218 58 DWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASM 136 (163)
Q Consensus 58 di~e~~~~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 136 (163)
.+.++++...|.+.+| ++.+++|.|.+.+ +.|.|+... +. +.-.-.|...|+++....++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~~-----------~~l~~~L~~~I~~~~s~w~~ 62 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------GE-----------PLLDGELYAKVKVDESTWTL 62 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------CC-----------ceEcCcccCceeEcCCEEEE
Confidence 5789999999999997 7899999999997 578888531 00 11223588899999988899
Q ss_pred eC-CEEEEEEeCcC
Q 031218 137 EN-GVLTVTVPKAE 149 (163)
Q Consensus 137 ~~-GvL~I~~pK~~ 149 (163)
.+ ..|.|+++|..
T Consensus 63 ~~~~~v~i~L~K~~ 76 (85)
T cd06467 63 EDGKLLEITLEKRN 76 (85)
T ss_pred eCCCEEEEEEEECC
Confidence 99 99999999987
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.76 E-value=0.00036 Score=46.19 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=58.1
Q ss_pred eEEEECCCeEEEEEEcC-CccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEE
Q 031218 57 VDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKAS 135 (163)
Q Consensus 57 ~di~e~~~~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 135 (163)
+++.++.+...|.+.+| |+.++|++|+++. +.|.|.... +.. + -.-.|...|+++...-.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~-------~~~----------~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD-------QAP----------L-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC-------CCe----------E-EeCcccCcccccCcEEE
Confidence 36789999999999996 9999999999997 478886420 000 1 12378889999988888
Q ss_pred EeCC-EEEEEEeCcC
Q 031218 136 MENG-VLTVTVPKAE 149 (163)
Q Consensus 136 ~~~G-vL~I~~pK~~ 149 (163)
+++| .|.|+|.|..
T Consensus 62 i~~~~~l~i~L~K~~ 76 (85)
T cd06493 62 IKENKSLEVSLIKKD 76 (85)
T ss_pred EeCCCEEEEEEEECC
Confidence 8777 7999999987
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.51 E-value=0.0018 Score=43.86 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=60.6
Q ss_pred cceeEEEECCCeEEEEEEcC-CccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCe
Q 031218 54 NTRVDWKETPEAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRI 132 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 132 (163)
.+.+.+.++.+...|.+.+| |++++|+.|.+... .|.|..+.. .+ -.| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g~--------~~-----l~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKGQ--------EV-----LKG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECCE--------EE-----EcC------cccCccCcccC
Confidence 46789999999999999998 99999999999974 788874210 00 011 57888999998
Q ss_pred EEEEeCCE-EEEEEeCcC
Q 031218 133 KASMENGV-LTVTVPKAE 149 (163)
Q Consensus 133 ~A~~~~Gv-L~I~~pK~~ 149 (163)
.-++++|- |.|+|.|..
T Consensus 65 tWtled~k~l~I~L~K~~ 82 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred EEEEECCcEEEEEEEeCC
Confidence 88898775 899999975
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.43 E-value=0.0037 Score=43.31 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=60.8
Q ss_pred ceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 031218 55 TRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKA 134 (163)
Q Consensus 55 p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 134 (163)
|++++.++.+.+.|++.+|+ .++++|.+++ +.|+++|... ++. .|.-.+.|=..|+++..+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCeE
Confidence 78899999999999999999 4789999987 4899998431 111 2444678888899997777
Q ss_pred EEeCCEEEEEEeCcC
Q 031218 135 SMENGVLTVTVPKAE 149 (163)
Q Consensus 135 ~~~~GvL~I~~pK~~ 149 (163)
....--+.|.+.|..
T Consensus 64 ~v~~r~ve~~L~K~~ 78 (106)
T cd00237 64 KRTDRSILCCLRKGK 78 (106)
T ss_pred EeCCceEEEEEEeCC
Confidence 777778888999876
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.05 E-value=0.0041 Score=51.73 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=65.9
Q ss_pred cceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeE
Q 031218 54 NTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIK 133 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 133 (163)
.++.||+++++.+.|.+.+.|+.++++.|.+.+ +.|.|+..... + ..|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG-----E----------DAYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC-----C----------cceeecccccccccccccE
Confidence 477899999999999999999999999999986 57888854321 1 1255567888999999988
Q ss_pred EEEeCCEEEEEEeCcC
Q 031218 134 ASMENGVLTVTVPKAE 149 (163)
Q Consensus 134 A~~~~GvL~I~~pK~~ 149 (163)
.+....-+.|+|.|..
T Consensus 220 ~~v~~~Kiei~l~K~~ 235 (356)
T PLN03088 220 YEVLSTKIEIRLAKAE 235 (356)
T ss_pred EEEecceEEEEEecCC
Confidence 8888789999998876
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.04 E-value=0.0028 Score=47.72 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=61.6
Q ss_pred cceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeE
Q 031218 54 NTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIK 133 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 133 (163)
.++.|++++....+|.+-.+++.++|++|.+.+ +.|.|..+.... . .|.-...|-..|.+++.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g-----~----------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSG-----S----------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCc-----h----------hhhhhHHhccccccccee
Confidence 467899999999999999999999999999986 578777554311 1 133344577788888777
Q ss_pred EEEeCCEEEEEEeCcC
Q 031218 134 ASMENGVLTVTVPKAE 149 (163)
Q Consensus 134 A~~~~GvL~I~~pK~~ 149 (163)
-+.-.--++|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777778889998854
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.49 E-value=0.081 Score=35.11 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=53.8
Q ss_pred eEEEECCCeEEEEEEcCCc--cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 031218 57 VDWKETPEAHVFKADLPGL--RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKA 134 (163)
Q Consensus 57 ~di~e~~~~~~l~~~lPG~--~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 134 (163)
.|++++++..+|.+...+. .+.++.+.... +.|.|+-... .. .|...+.|=..|+++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~----~~------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG----DK------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC----Cc------------eEEEeeeccccCCCCc-EE
Confidence 3799999999999998864 44455555554 4788874322 01 2666778888898775 55
Q ss_pred EEe--CCEEEEEEeCcC
Q 031218 135 SME--NGVLTVTVPKAE 149 (163)
Q Consensus 135 ~~~--~GvL~I~~pK~~ 149 (163)
++. -|-++|++.|..
T Consensus 63 ~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 63 RISTETGKIELVLKKKE 79 (87)
T ss_pred EEcccCceEEEEEEcCC
Confidence 554 889999999987
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.92 E-value=0.11 Score=34.49 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=54.5
Q ss_pred EEEECCCeEEEEEEcC-C--ccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 031218 58 DWKETPEAHVFKADLP-G--LRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKA 134 (163)
Q Consensus 58 di~e~~~~~~l~~~lP-G--~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 134 (163)
.+.++.+...|.+.+| | +++.||+|.+.. +.|.|.-+.+ ... -.-.|...|+++...-
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~~----------i~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PPI----------IDGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ceE----------EeCcccCcccccccEE
Confidence 3567888899999996 3 788999999987 4788753211 111 1125778899998888
Q ss_pred EEeCC-EEEEEEeCcC
Q 031218 135 SMENG-VLTVTVPKAE 149 (163)
Q Consensus 135 ~~~~G-vL~I~~pK~~ 149 (163)
.+++| .|.|+|-|..
T Consensus 63 tled~~~l~i~L~K~~ 78 (87)
T cd06492 63 LIEDGKVVTVNLEKIN 78 (87)
T ss_pred EEeCCCEEEEEEEECC
Confidence 89886 8999999985
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.85 E-value=0.18 Score=34.64 Aligned_cols=80 Identities=13% Similarity=0.297 Sum_probs=59.2
Q ss_pred cceeEEEECCCeEEEEEEcC-Cc-cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCC
Q 031218 54 NTRVDWKETPEAHVFKADLP-GL-RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDR 131 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~~~lP-G~-~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 131 (163)
...+.+.++-+...|.+.|| |. +..+|.|.+.. +.|.|.-+.. .+..... .| .|...|+.+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~i----~G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVLM----EG------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceEE----eC------cccCcccCcc
Confidence 46788999999999999999 64 57899999997 4788775310 0000110 11 5788899999
Q ss_pred eEEEEeCC-EEEEEEeCcC
Q 031218 132 IKASMENG-VLTVTVPKAE 149 (163)
Q Consensus 132 i~A~~~~G-vL~I~~pK~~ 149 (163)
..-.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 88889886 5899999975
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=88.82 E-value=4.8 Score=30.32 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=58.3
Q ss_pred ccccceeEEEECCCeEEEEEEcC-Cc-cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcc
Q 031218 51 AFVNTRVDWKETPEAHVFKADLP-GL-RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAK 128 (163)
Q Consensus 51 ~~~~p~~di~e~~~~~~l~~~lP-G~-~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd 128 (163)
+...+.+.|..|=..+.|.+.+| |+ +..+|.|.+.. +.|.|.-+.+.. ++ .=.|...|+
T Consensus 15 g~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~-------il-----------dG~L~~~vk 75 (179)
T KOG2265|consen 15 GADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP-------IL-----------DGELSHSVK 75 (179)
T ss_pred CccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc-------ee-----------cCccccccc
Confidence 33457788999989999998887 88 77899999985 567666433211 11 124667888
Q ss_pred cCCeEEEEeCCEEEEEEeCcC
Q 031218 129 MDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 129 ~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.+...-++++|.+.|.+-++.
T Consensus 76 ~des~WtiEd~k~i~i~l~K~ 96 (179)
T KOG2265|consen 76 VDESTWTIEDGKMIVILLKKS 96 (179)
T ss_pred cccceEEecCCEEEEEEeecc
Confidence 998899999998888777655
No 43
>PF14913 DPCD: DPCD protein family
Probab=87.97 E-value=6.6 Score=29.99 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=59.8
Q ss_pred cccccceeEEEECCCeEEEEE-EcCCccCcCeEEEEeCC-eEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCC-
Q 031218 50 SAFVNTRVDWKETPEAHVFKA-DLPGLRKEEVKVEVEDD-RVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPEN- 126 (163)
Q Consensus 50 ~~~~~p~~di~e~~~~~~l~~-~lPG~~~edi~v~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~- 126 (163)
.+..+|-+-=..|...|.-++ .||. .++-.+|+++++ +.++|+..- ..|.+.|.+|+-
T Consensus 82 ESs~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtN------------------KKYyKk~~IPDl~ 142 (194)
T PF14913_consen 82 ESSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTN------------------KKYYKKFSIPDLD 142 (194)
T ss_pred ecCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcC------------------ccceeEecCCcHH
Confidence 344556666677888899888 6664 788888888743 568887331 147888999952
Q ss_pred -----cccCCeEEEEeCCEEEEEEeCcC
Q 031218 127 -----AKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 127 -----vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.+.+.++..+.|..|.|+..|..
T Consensus 143 R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 143 RCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhCCCcchhhceeeeecCeEEEEecCcH
Confidence 36677888889999999998864
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=3.9 Score=30.77 Aligned_cols=79 Identities=10% Similarity=0.197 Sum_probs=57.3
Q ss_pred ccceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCe
Q 031218 53 VNTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRI 132 (163)
Q Consensus 53 ~~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 132 (163)
..|.+.|.+..+.+.+++.++-. .+..|.++. ..|+++|+.... . -.+...|.|=..||+++.
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d----~----------~~~~~~ief~~eIdpe~s 68 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGAD----N----------HKYENEIEFFDEIDPEKS 68 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCC----c----------eeeEEeeehhhhcCHhhc
Confidence 35788899999999999999865 455566665 479999886421 1 135667888889999988
Q ss_pred EEEEeCCEEEEEEeCcC
Q 031218 133 KASMENGVLTVTVPKAE 149 (163)
Q Consensus 133 ~A~~~~GvL~I~~pK~~ 149 (163)
+.+-. +-....++++.
T Consensus 69 k~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 69 KHKRT-SRSIFCILRKK 84 (180)
T ss_pred ccccc-ceEEEEEEEcc
Confidence 87766 66666666554
No 45
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=81.84 E-value=11 Score=30.25 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=67.9
Q ss_pred CcccccceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcc
Q 031218 49 ASAFVNTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAK 128 (163)
Q Consensus 49 ~~~~~~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd 128 (163)
......-+.||..++..++|.|..-|.-++.-.|..+ +..|.|.-..... -..|...+.|=.-|+
T Consensus 209 ~~~V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~~g--------------na~fd~d~kLwgvvn 273 (320)
T KOG1667|consen 209 NEIVVKCRHDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFGFG--------------NASFDLDYKLWGVVN 273 (320)
T ss_pred cCccccchhhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEecCC--------------Cceeeccceeeeeec
Confidence 3334567889999999999999999999998888886 5678877554211 114777777777789
Q ss_pred cCCeEEEEeCCEEEEEEeCcC
Q 031218 129 MDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 129 ~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.+..++.+----++|+|+|.+
T Consensus 274 ve~s~v~m~~tkVEIsl~k~e 294 (320)
T KOG1667|consen 274 VEESSVVMGETKVEISLKKAE 294 (320)
T ss_pred hhhceEEeecceEEEEEeccC
Confidence 999999998889999999987
No 46
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=81.00 E-value=3.8 Score=27.20 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=29.1
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-...|| +++.+.|+.++.+|.|+|+.-+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 466778999 689999999999999999998765
No 47
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=79.88 E-value=20 Score=25.75 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=49.3
Q ss_pred ceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEE
Q 031218 55 TRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKA 134 (163)
Q Consensus 55 p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 134 (163)
..+.|...++ ..+++.. ..+.++++.++ +.|.|+.+...... ...+..... ...-.-.+.||.....++++.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 4456666443 4444444 21268888875 58999876221100 011111111 223456789999988889999
Q ss_pred EEeCCEEEEEE
Q 031218 135 SMENGVLTVTV 145 (163)
Q Consensus 135 ~~~~GvL~I~~ 145 (163)
.-.+|-++|.=
T Consensus 138 ~~~~G~i~i~~ 148 (166)
T PF13349_consen 138 KTSSGDITIED 148 (166)
T ss_pred EeccccEEEEc
Confidence 99999888753
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=76.88 E-value=9.4 Score=25.11 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=29.2
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
+|.-.+.|| +++.+.|+..++++.|+|+..+..
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~ 44 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKAD 44 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577789999 589999999999999999988766
No 49
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=76.38 E-value=6.5 Score=25.81 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| +++++.|+-.+++|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477788998 589999999999999999998755
No 50
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=76.05 E-value=6.3 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=28.5
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| ++.++.|+.+++||.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577789998 589999999999999999997644
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=75.29 E-value=8 Score=25.14 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=28.6
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| +++++.|+.++.+|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEce
Confidence 577789999 799999999999999999996543
No 52
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=73.64 E-value=15 Score=22.63 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.1
Q ss_pred eeEEE-ECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEE
Q 031218 56 RVDWK-ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQR 96 (163)
Q Consensus 56 ~~di~-e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~ 96 (163)
++.+. -..+.|.|++..+|+....-.|.+..|....|+..-
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 34555 456799999999999998888888766677777553
No 53
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=73.51 E-value=8.6 Score=25.24 Aligned_cols=33 Identities=6% Similarity=0.141 Sum_probs=28.4
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| +++++.|+.+..+|.|+|+.-+..
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577789998 689999999999999999987543
No 54
>PRK10743 heat shock protein IbpA; Provisional
Probab=73.19 E-value=13 Score=26.71 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=26.1
Q ss_pred EEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 117 FSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
|.-...|| +++.+.|+..+++|+|+|+.-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 33347788 789999999999999999997654
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=72.01 E-value=9.4 Score=24.89 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| +++++.|+.+.++|.|+|+.-|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477789999 689999999999999999987654
No 56
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=71.58 E-value=14 Score=24.51 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred CeEEEEEEcC-CccCcCeEEEEeCCeEEEEEEEEeeee
Q 031218 64 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRNIEK 100 (163)
Q Consensus 64 ~~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g~~~~~~ 100 (163)
..|.-.+.|| +++.+.|+..+.+| .|+|+..+....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~ 91 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSC
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEccccc
Confidence 4677789999 88899999999886 999998876554
No 57
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=71.36 E-value=8 Score=25.38 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCccCcCeEEEEeCCeEEEEEE
Q 031218 64 EAHVFKADLPGLRKEEVKVEVEDDRVLQISG 94 (163)
Q Consensus 64 ~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g 94 (163)
..|.-.+.||.+..+.++-++.+| .|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 467777889999999999999987 999874
No 58
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=71.30 E-value=2.9 Score=33.95 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=62.2
Q ss_pred CcccccceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcc
Q 031218 49 ASAFVNTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAK 128 (163)
Q Consensus 49 ~~~~~~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd 128 (163)
........+++.+|.....|-+.-|-+..++|++.++ +++|.|+-+..... --+.-.+.|-..|+
T Consensus 171 E~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e-~NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~ 235 (368)
T COG5091 171 ESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLE-GNTLSISYQPRRLR--------------LWNDITISLYKEVY 235 (368)
T ss_pred cCccceeeeeccccceeEEEEEecCCCCccccceeec-CCcceeeeeccccc--------------hHHHhhhhhhhhcC
Confidence 3344456678889999999989999999999999998 47999986543210 01334567778888
Q ss_pred cCCeEEEEeCCEEEEEEeCcC
Q 031218 129 MDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 129 ~~~i~A~~~~GvL~I~~pK~~ 149 (163)
++..+-+.-..++.|++-|..
T Consensus 236 P~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 236 PDIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred cchhhhhhcchhheehhhhhh
Confidence 888776665578888887754
No 59
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.47 E-value=11 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=29.5
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| ++.++.|+..++++.|+|+..+..
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEee
Confidence 578889999 499999999999999999998765
No 60
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=68.30 E-value=13 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.5
Q ss_pred CeEEEEEEcC-CccCcCeEEEEe-CCeEEEEEE
Q 031218 64 EAHVFKADLP-GLRKEEVKVEVE-DDRVLQISG 94 (163)
Q Consensus 64 ~~~~l~~~lP-G~~~edi~v~v~-~~~~L~I~g 94 (163)
..|.=.+.|| +++.++|+-.+. +| .|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 5677788999 999999999998 65 899985
No 61
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=67.62 E-value=16 Score=23.98 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.6
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| ++.++.|+.+++++.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 477789998 589999999999999999998654
No 62
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=67.00 E-value=12 Score=24.42 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=28.2
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| +++++.|+..+.++.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577789998 689999999999999999996543
No 63
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=66.55 E-value=21 Score=25.89 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.0
Q ss_pred EEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 117 FSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
|.-...|| +++.+.|+-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 33447788 689999999999999999997654
No 64
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=65.43 E-value=17 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 577789999 699999999999999999997654
No 65
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=65.32 E-value=13 Score=24.43 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCeEEEEEEcC-CccCcCeEEEEeCCeEEEEEE
Q 031218 63 PEAHVFKADLP-GLRKEEVKVEVEDDRVLQISG 94 (163)
Q Consensus 63 ~~~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g 94 (163)
...|.-.+.|| +++.+.|+-.+.+| .|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 46888999999 78899999999987 999874
No 66
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=64.61 E-value=6.8 Score=24.19 Aligned_cols=17 Identities=47% Similarity=0.554 Sum_probs=12.0
Q ss_pred CCeEEEEeCCEEEEEEe
Q 031218 130 DRIKASMENGVLTVTVP 146 (163)
Q Consensus 130 ~~i~A~~~~GvL~I~~p 146 (163)
..|+|.|+||+|.-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 45899999999986533
No 67
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=62.24 E-value=33 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=29.0
Q ss_pred cceeEEEECCCeEEEEEEcCCc-----cCcCeEEEEeCCeEEEEE
Q 031218 54 NTRVDWKETPEAHVFKADLPGL-----RKEEVKVEVEDDRVLQIS 93 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~~~lPG~-----~~edi~v~v~~~~~L~I~ 93 (163)
.|.+.|+++++.|.|.+--+.- .++...|+-.+| .+-|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 5999999999999998866543 556667776666 45554
No 68
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=59.19 E-value=24 Score=22.20 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=29.3
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.-.+.||. ++.+.++..+.++.|.|+..+..
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEEECCEEEEEEEEec
Confidence 5777899996 89999999999999999988775
No 69
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=57.40 E-value=37 Score=21.07 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.9
Q ss_pred CeEEEEEEcC-CccCcCeEEEEeCCeEEEEEEEEe
Q 031218 64 EAHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRN 97 (163)
Q Consensus 64 ~~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g~~~ 97 (163)
+.|.+.++|| .+++++.+.++.+| .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 5688999998 56889999999875 788886653
No 70
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=56.97 E-value=23 Score=21.21 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=19.3
Q ss_pred CCccCcCeEEEEeCCeEEEEEEEEee
Q 031218 73 PGLRKEEVKVEVEDDRVLQISGQRNI 98 (163)
Q Consensus 73 PG~~~edi~v~v~~~~~L~I~g~~~~ 98 (163)
++++..+|+|.+.+| .+.|+|....
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 356667899999976 8999999854
No 71
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=56.36 E-value=37 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=20.4
Q ss_pred eEEEEEEcC-CccCcCeEEEEeCCeEEEEEEEEee
Q 031218 65 AHVFKADLP-GLRKEEVKVEVEDDRVLQISGQRNI 98 (163)
Q Consensus 65 ~~~l~~~lP-G~~~edi~v~v~~~~~L~I~g~~~~ 98 (163)
.|.-.+.|| +++.+.+.-++.+| .|+|.-.+..
T Consensus 101 ~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~ 134 (146)
T COG0071 101 EFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAE 134 (146)
T ss_pred eEEEEEECcccccccceeeEeeCc-EEEEEEeccc
Confidence 444555566 45555677777765 7777766544
No 72
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=55.10 E-value=17 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=24.8
Q ss_pred EEcC-CccCcCeEEEEeCCeEEEEEEEEeee
Q 031218 70 ADLP-GLRKEEVKVEVEDDRVLQISGQRNIE 99 (163)
Q Consensus 70 ~~lP-G~~~edi~v~v~~~~~L~I~g~~~~~ 99 (163)
.-|| ||+++.|.-.+..+++|+|+|.+...
T Consensus 121 y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 121 YLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred ecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 4588 99999999999855699999987654
No 73
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=53.00 E-value=56 Score=25.00 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=52.4
Q ss_pred eEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEE-CCCCcccCCeEEE
Q 031218 57 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFR-LPENAKMDRIKAS 135 (163)
Q Consensus 57 ~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~-LP~~vd~~~i~A~ 135 (163)
+-|-+.++.+.+.+.|-||..++|+++... +.|-+....- .+. +|.-.+. |-.++++++..-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dl-----qGK----------~y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDL-----QGK----------NYRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeec-----CCc----------ceeeehhhhccccChhhcccc
Confidence 345567777789999999999999999986 4676664321 122 2322222 4466888888888
Q ss_pred EeCCEEEEEEeCcC
Q 031218 136 MENGVLTVTVPKAE 149 (163)
Q Consensus 136 ~~~GvL~I~~pK~~ 149 (163)
.+-....|.+.|.+
T Consensus 141 vKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 141 VKTDTVLILCKKVE 154 (224)
T ss_pred cccceEEEeehhhh
Confidence 88777778885543
No 74
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=52.38 E-value=81 Score=23.81 Aligned_cols=46 Identities=30% Similarity=0.567 Sum_probs=30.8
Q ss_pred cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 031218 76 RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 76 ~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 146 (163)
=|++++|++++ +.++|+|.+ |...+.|.-+ .++...++|.|.|+..
T Consensus 12 IP~~V~v~i~~-~~v~VkGp~------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGPK------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 36788999986 689999864 3344433321 3555678888888755
No 75
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=49.07 E-value=1.1e+02 Score=22.88 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=30.6
Q ss_pred CcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEeC
Q 031218 77 KEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPK 147 (163)
Q Consensus 77 ~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK 147 (163)
|++++|++++ +.++|+|.. |...+.+. |. .+....+++.|.|..+.
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~~ 52 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETDF 52 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeCC
Confidence 5788999985 689999864 33444442 32 35556788888887543
No 76
>PRK10568 periplasmic protein; Provisional
Probab=46.39 E-value=34 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=20.7
Q ss_pred CCccCcCeEEEEeCCeEEEEEEEEee
Q 031218 73 PGLRKEEVKVEVEDDRVLQISGQRNI 98 (163)
Q Consensus 73 PG~~~edi~v~v~~~~~L~I~g~~~~ 98 (163)
++++..+|+|.+.+| .+++.|....
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 567778899999986 8999999863
No 77
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=46.04 E-value=1.1e+02 Score=22.84 Aligned_cols=44 Identities=30% Similarity=0.575 Sum_probs=29.8
Q ss_pred CcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 031218 77 KEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 77 ~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 146 (163)
|++|+|++++ +.|+|+|.. |...+.+ |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5788999985 689999864 3344444 44 3445568888777754
No 78
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=45.61 E-value=89 Score=22.21 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=10.3
Q ss_pred eeEEEECCCeEEEEEE
Q 031218 56 RVDWKETPEAHVFKAD 71 (163)
Q Consensus 56 ~~di~e~~~~~~l~~~ 71 (163)
.+++.++++.+.|...
T Consensus 86 ~~~~~~~~~~L~I~~~ 101 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSK 101 (166)
T ss_pred EEEEEEcCCEEEEEEe
Confidence 3566666666666665
No 79
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=44.10 E-value=80 Score=19.85 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.4
Q ss_pred EEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 031218 117 FSRRFRLPENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 117 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 146 (163)
..-.|.+|..++.+.++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 455688999899999999998888888886
No 80
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=43.98 E-value=67 Score=20.86 Aligned_cols=42 Identities=14% Similarity=0.448 Sum_probs=25.5
Q ss_pred CCcEEEEeeeeeEEEEEEECCCCcccCC-eEEEEeCCEE-EEEE
Q 031218 104 SDTWHRVERSSGMFSRRFRLPENAKMDR-IKASMENGVL-TVTV 145 (163)
Q Consensus 104 ~~~~~~~e~~~g~f~r~~~LP~~vd~~~-i~A~~~~GvL-~I~~ 145 (163)
.+.|....-.+--|.|.|.+|+...+.. +.-.|.+|-+ .|+-
T Consensus 30 pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 30 PGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp TTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 3445544444556889999999976665 8888988744 3544
No 81
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=43.26 E-value=1.2e+02 Score=22.78 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=29.6
Q ss_pred CcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 031218 77 KEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 77 ~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 146 (163)
|++|+|++++ +.|+|+|.. |...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 5789999986 689999864 3455544 443 344568887777654
No 82
>PRK14290 chaperone protein DnaJ; Provisional
Probab=42.57 E-value=1.4e+02 Score=25.00 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=19.3
Q ss_pred EEECCCCcccCCeEEEEeCCEEEEEEeCcC
Q 031218 120 RFRLPENAKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 120 ~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
.|.|.+.+--..+.-..-+|.++|.+|...
T Consensus 277 ~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~ 306 (365)
T PRK14290 277 KINFPQAALGGEIEIKLFREKYNLKIPEGT 306 (365)
T ss_pred EeCHHHHhCCCEEEEEcCCceEEEEECCcc
Confidence 444445555555666667788899998643
No 83
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=42.37 E-value=55 Score=21.80 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEEEECCCCcccCCeEEEEeCCEEEEEE
Q 031218 116 MFSRRFRLPENAKMDRIKASMENGVLTVTV 145 (163)
Q Consensus 116 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~ 145 (163)
...-+|+||.++..+.+...+...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 455668899999999999999999999988
No 84
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=41.11 E-value=13 Score=27.21 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=16.5
Q ss_pred CCcccCCeEEEEeCCEEEEEEe
Q 031218 125 ENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 125 ~~vd~~~i~A~~~~GvL~I~~p 146 (163)
+.+..+.-.+.|.||||+|.++
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hhcCccccccccccceEEEEec
Confidence 3344455667799999999997
No 85
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=38.72 E-value=1.2e+02 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.530 Sum_probs=29.0
Q ss_pred CcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 031218 77 KEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 77 ~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 146 (163)
|++|+|++++ +.|+|+|..- ... ..||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G------------------~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKG------------------TLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE------------------EEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 4788899985 6899998642 233 455553 445568887777654
No 86
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=38.61 E-value=1.4e+02 Score=22.76 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=31.7
Q ss_pred cCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEeC
Q 031218 76 RKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPK 147 (163)
Q Consensus 76 ~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK 147 (163)
=|++|+|++++ +.++|+|.. |...+.| |.. ...+....++|.|.|+.+.
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~------------------G~L~~~~--~~~--~~~i~i~~~~~~i~v~~~~ 60 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKY------------------GELTRSF--RHL--PVDIKLSKDGKYIKVEMWF 60 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------ceEEEEe--cCC--CceEEEEeCCCEEEEEeCC
Confidence 36899999985 689999764 3344433 321 1245666788887777553
No 87
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.23 E-value=91 Score=21.01 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=26.9
Q ss_pred eEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEE
Q 031218 57 VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQ 95 (163)
Q Consensus 57 ~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~ 95 (163)
.+|.+.+| .|....||. +.|.|+.+++ .|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgi--s~ieik~E~k-kL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGI--SRIEIKPENK-KLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCc--eEEEEecccc-eEEEecc
Confidence 57888888 677889998 5688888874 7888873
No 88
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=37.73 E-value=1.4e+02 Score=23.37 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEEEEEeeeec-CCCCcEEE------EeeeeeEEEEEEECCCC
Q 031218 82 VEVEDDRVLQISGQRNIEKE-DKSDTWHR------VERSSGMFSRRFRLPEN 126 (163)
Q Consensus 82 v~v~~~~~L~I~g~~~~~~~-~~~~~~~~------~e~~~g~f~r~~~LP~~ 126 (163)
|.+++| .|+|++.+..... .....+.. ....+|.|+-++.||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 455666 7999987654311 11122221 12367899999999853
No 89
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=36.59 E-value=39 Score=23.15 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 031218 130 DRIKASMENGVLTVTVPK 147 (163)
Q Consensus 130 ~~i~A~~~~GvL~I~~pK 147 (163)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 457788899999999983
No 90
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=34.88 E-value=50 Score=21.05 Aligned_cols=34 Identities=12% Similarity=0.351 Sum_probs=24.6
Q ss_pred EEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEE
Q 031218 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQ 91 (163)
Q Consensus 58 di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~ 91 (163)
.|....+.|.+++.+=|+....|.+.-.+|..+.
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~ 47 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIA 47 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEE
Confidence 4677788999999999999889999988774333
No 91
>PRK04517 hypothetical protein; Provisional
Probab=34.78 E-value=2.1e+02 Score=22.05 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=11.2
Q ss_pred CCeEEEE--eCCEEEEEEeCcC
Q 031218 130 DRIKASM--ENGVLTVTVPKAE 149 (163)
Q Consensus 130 ~~i~A~~--~~GvL~I~~pK~~ 149 (163)
+-+-++| .|.-|++.+|+..
T Consensus 83 ~p~IvtF~a~~~~~~l~~P~~~ 104 (216)
T PRK04517 83 DVIIATFDAANTELTFDMPKYR 104 (216)
T ss_pred CCEEEEEecCCcEEEEECCCCC
Confidence 3344444 4567777777643
No 92
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=34.55 E-value=57 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=15.8
Q ss_pred CCeEEEEeCCEEEEEEeCc
Q 031218 130 DRIKASMENGVLTVTVPKA 148 (163)
Q Consensus 130 ~~i~A~~~~GvL~I~~pK~ 148 (163)
..+.+.+.+|||+|+++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3588999999999999643
No 93
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=34.10 E-value=44 Score=22.92 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.4
Q ss_pred eEEEEeCCEEEEEEeCc
Q 031218 132 IKASMENGVLTVTVPKA 148 (163)
Q Consensus 132 i~A~~~~GvL~I~~pK~ 148 (163)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999754
No 94
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=33.94 E-value=54 Score=20.37 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCccCcCe-EEEEeCCeEEEE
Q 031218 64 EAHVFKADLPGLRKEEV-KVEVEDDRVLQI 92 (163)
Q Consensus 64 ~~~~l~~~lPG~~~edi-~v~v~~~~~L~I 92 (163)
+.|.|.+..+|+.+... .|.+..++...|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 68999999999988887 588775544444
No 95
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=33.21 E-value=41 Score=22.96 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.3
Q ss_pred CeEEEEeCCEEEEEEeC
Q 031218 131 RIKASMENGVLTVTVPK 147 (163)
Q Consensus 131 ~i~A~~~~GvL~I~~pK 147 (163)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 37788899999999974
No 96
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=32.93 E-value=1.4e+02 Score=22.64 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=25.7
Q ss_pred CcCeEEEEeCCeEEEEEEEEeeee--cCCCCcEEE-EeeeeeEEEEEEECCCC
Q 031218 77 KEEVKVEVEDDRVLQISGQRNIEK--EDKSDTWHR-VERSSGMFSRRFRLPEN 126 (163)
Q Consensus 77 ~edi~v~v~~~~~L~I~g~~~~~~--~~~~~~~~~-~e~~~g~f~r~~~LP~~ 126 (163)
++++.|. +| .|+|++.+.... .-.++.+.. ....+|.|+-++.+|..
T Consensus 31 ~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 4555444 55 688887654321 001222222 12467899999998853
No 97
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=32.42 E-value=68 Score=23.18 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.2
Q ss_pred CCccCcCeEEEEeCCeEEEEEEEEee
Q 031218 73 PGLRKEEVKVEVEDDRVLQISGQRNI 98 (163)
Q Consensus 73 PG~~~edi~v~v~~~~~L~I~g~~~~ 98 (163)
.|+...+++|.+.+| .++++|....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCC
Confidence 478888899999976 9999998764
No 98
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=32.17 E-value=2.3e+02 Score=21.61 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred CccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcE-----EE---EeeeeeEEEEEEECCCC
Q 031218 74 GLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTW-----HR---VERSSGMFSRRFRLPEN 126 (163)
Q Consensus 74 G~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~-----~~---~e~~~g~f~r~~~LP~~ 126 (163)
-..++++. +++| .|+|++.+..........+ .. ....+|.|+-++.+|..
T Consensus 34 ~~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 34556655 4465 7999987654311111122 22 12356888889998864
No 99
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=30.46 E-value=1.6e+02 Score=19.22 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=13.0
Q ss_pred CeEEEEeCCEEEEEEeC
Q 031218 131 RIKASMENGVLTVTVPK 147 (163)
Q Consensus 131 ~i~A~~~~GvL~I~~pK 147 (163)
.+.+..+||-.++++-+
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 36777899988888754
No 100
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=28.27 E-value=2.3e+02 Score=21.55 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=30.0
Q ss_pred CcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCcccCCeEEEEeCCEEEEEEe
Q 031218 77 KEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 146 (163)
Q Consensus 77 ~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 146 (163)
|++|+|++++ +.|+|+|.+. ..+ ..||.. + -.+....+++.|.|+-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG------------------~Ls--~~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRG------------------TLT--KDLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCc------------------EEE--EEcCCC-C-cEEEEEecCCEEEEEeC
Confidence 5789999985 6899998652 333 344431 0 13455667788888744
No 101
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=28.00 E-value=84 Score=17.53 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=13.0
Q ss_pred CccCcCeEEEEeCCeEEEEE
Q 031218 74 GLRKEEVKVEVEDDRVLQIS 93 (163)
Q Consensus 74 G~~~edi~v~v~~~~~L~I~ 93 (163)
..+-+.+.|+..+|+.++|+
T Consensus 20 ~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 20 EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEESSEEEEEETTTEEEEEE
T ss_pred EEcCCEEEEEECCCCEEEeC
Confidence 45556777777777666554
No 102
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=27.78 E-value=63 Score=19.95 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=18.0
Q ss_pred CccCcCeEEEEeCCeEEEEEEEEe
Q 031218 74 GLRKEEVKVEVEDDRVLQISGQRN 97 (163)
Q Consensus 74 G~~~edi~v~v~~~~~L~I~g~~~ 97 (163)
-++.+.|.+....| .|.|+|+.=
T Consensus 22 ~f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 22 SFDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EEETTEEEEEETTE-EEEEEEEEE
T ss_pred EECCCEEEEEeCCE-EEEEECceE
Confidence 35778888988875 899999864
No 103
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=27.32 E-value=2.8e+02 Score=21.02 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=28.0
Q ss_pred ECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeee
Q 031218 61 ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIE 99 (163)
Q Consensus 61 e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~ 99 (163)
..++.|+=++.||--..+..++++++| +|.|.-++..+
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~ 170 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEE 170 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCC
Confidence 344456667888865667789999986 99999887654
No 104
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=33 Score=29.49 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=51.1
Q ss_pred cceeEEEECCCeEEEEEEcCCccCcCeEEEEeCCeEEEEEEEEeeeecCCCCcEEEEeeeeeEEEEEEECCCCc-ccCCe
Q 031218 54 NTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENA-KMDRI 132 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~~~lPG~~~edi~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v-d~~~i 132 (163)
+|.+.+..+++...|.+..|-.....+.+-..+ +.++.+ .|.|.-+..+|..+ +...-
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~--------------------~~pyflrl~~p~~~~~d~~~ 61 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS--------------------AGPYFLRLAGPGMVEDDARP 61 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc--------------------cchhHHhhcCcchhhhhccc
Confidence 578889999999999999996666666555543 333333 23345556677654 44445
Q ss_pred EEEE--eCCEEEEEEeCcC
Q 031218 133 KASM--ENGVLTVTVPKAE 149 (163)
Q Consensus 133 ~A~~--~~GvL~I~~pK~~ 149 (163)
.|+| ++|-..|++||..
T Consensus 62 n~s~d~kd~~~~vK~~K~~ 80 (466)
T KOG3247|consen 62 NASYDAKDGYAHVKVPKFH 80 (466)
T ss_pred cCccccccceeEEeecCCC
Confidence 5666 7899999999965
No 105
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=26.95 E-value=50 Score=22.35 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.0
Q ss_pred EEEEeCCEEEEEEeCc
Q 031218 133 KASMENGVLTVTVPKA 148 (163)
Q Consensus 133 ~A~~~~GvL~I~~pK~ 148 (163)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6678999999999643
No 106
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=26.47 E-value=1.1e+02 Score=18.60 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=16.9
Q ss_pred EcCCccC-cCeEEEEeCCeEEEEE
Q 031218 71 DLPGLRK-EEVKVEVEDDRVLQIS 93 (163)
Q Consensus 71 ~lPG~~~-edi~v~v~~~~~L~I~ 93 (163)
+-.||.. +.|+|++.+| .|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECC-EEEEe
Confidence 4458866 5799999986 78886
No 107
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=26.23 E-value=3.4e+02 Score=21.74 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEEEEEeeeec---------CCCCcEEEE------eeeeeEEEEEEECCC
Q 031218 82 VEVEDDRVLQISGQRNIEKE---------DKSDTWHRV------ERSSGMFSRRFRLPE 125 (163)
Q Consensus 82 v~v~~~~~L~I~g~~~~~~~---------~~~~~~~~~------e~~~g~f~r~~~LP~ 125 (163)
+.+.+| .|+|++.+..... .....|.+. ...+|.|+-++.||.
T Consensus 46 v~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 46 VVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred eEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 456676 7999988753211 111112221 236788999999753
No 108
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.68 E-value=6.8 Score=24.79 Aligned_cols=13 Identities=54% Similarity=0.588 Sum_probs=10.4
Q ss_pred CeEEEEeCCEEEE
Q 031218 131 RIKASMENGVLTV 143 (163)
Q Consensus 131 ~i~A~~~~GvL~I 143 (163)
-|.|.|+||||.-
T Consensus 6 IIEaiYEnGVfKP 18 (67)
T COG2880 6 IIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHhcccccc
Confidence 3778899999873
No 109
>PRK14299 chaperone protein DnaJ; Provisional
Probab=23.23 E-value=3.4e+02 Score=21.85 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=14.0
Q ss_pred cccCCeEEEEeCCEEEEEEeCcC
Q 031218 127 AKMDRIKASMENGVLTVTVPKAE 149 (163)
Q Consensus 127 vd~~~i~A~~~~GvL~I~~pK~~ 149 (163)
+--..+...--+|.++|++|...
T Consensus 215 l~G~~~~v~tldG~~~v~ip~~~ 237 (291)
T PRK14299 215 VVGGKVRVMTLDGPVEVTIPPRT 237 (291)
T ss_pred hCCCEEEEECCCCCEEEEeCCCc
Confidence 33344555556777888888543
No 110
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=22.66 E-value=74 Score=20.91 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=26.6
Q ss_pred cceeEEEECCCeEEEE--EEcCCccCcCeEEEEeCCeEEEEEEEEe
Q 031218 54 NTRVDWKETPEAHVFK--ADLPGLRKEEVKVEVEDDRVLQISGQRN 97 (163)
Q Consensus 54 ~p~~di~e~~~~~~l~--~~lPG~~~edi~v~v~~~~~L~I~g~~~ 97 (163)
.|.+.+.-. .+..|+ -.+=-|+.+.|.|....| .|.|+|+.=
T Consensus 19 ~p~itl~gr-~~~~Ien~k~I~~y~~~~I~l~t~~G-~l~I~G~~L 62 (85)
T TIGR02856 19 LPRITLIGN-EHIYIENHRGLVVFSPEEVKLNSTNG-KITIEGKNF 62 (85)
T ss_pred CCEEEEECC-cEEEEECccceEEECCCEEEEEcCce-EEEEEcccE
Confidence 355555433 233333 133456788999999875 899999853
No 111
>PF13014 KH_3: KH domain
Probab=22.66 E-value=1.1e+02 Score=16.84 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=12.2
Q ss_pred EEEEeCcCcccCCcceEEeccC
Q 031218 142 TVTVPKAEEAKKAHVRAIQISG 163 (163)
Q Consensus 142 ~I~~pK~~~~~~~~~~~I~I~~ 163 (163)
.|.+|+.. ......+.|.|.|
T Consensus 23 ~I~i~~~~-~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPEN-EPGSNERVVTITG 43 (43)
T ss_pred EEEECCcc-CCCCCceEEEEEC
Confidence 56677633 3444557777765
No 112
>PRK14284 chaperone protein DnaJ; Provisional
Probab=22.59 E-value=4.7e+02 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=17.9
Q ss_pred EEECCCCcccCCeEEEE-e-CCEEEEEEeCcC
Q 031218 120 RFRLPENAKMDRIKASM-E-NGVLTVTVPKAE 149 (163)
Q Consensus 120 ~~~LP~~vd~~~i~A~~-~-~GvL~I~~pK~~ 149 (163)
.|.|.+-+--..++... . +|.|+|++|...
T Consensus 285 ~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~ 316 (391)
T PRK14284 285 PIGFVDAALGMKKEIPTLLKEGTCRLTIPEGI 316 (391)
T ss_pred EecHHHHhCCCeEEEeecCCCcEEEEEECCcc
Confidence 34444445555555543 3 488999999654
No 113
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=21.49 E-value=2.2e+02 Score=17.87 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=27.4
Q ss_pred ccceeEEEECCCeEEEEEEcC-CccCcC--eEEEEeCCeEEEEE
Q 031218 53 VNTRVDWKETPEAHVFKADLP-GLRKEE--VKVEVEDDRVLQIS 93 (163)
Q Consensus 53 ~~p~~di~e~~~~~~l~~~lP-G~~~ed--i~v~v~~~~~L~I~ 93 (163)
.+-|+.+.+.++.++|.-.+| +..--. |.|.-.||+.|.+.
T Consensus 20 ~ekP~~v~~~~~~WiV~Gtl~~~~~GGv~~I~I~K~dgkVl~v~ 63 (66)
T PF15631_consen 20 EEKPYRVTLDGDSWIVEGTLPPGMLGGVFYIEIRKKDGKVLNVT 63 (66)
T ss_pred hcCCeEEecCCCeEEEEeecCCCccCCeEEEEEEccCCeEEEEE
Confidence 345778999999999999987 543333 33443466666654
No 114
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=21.28 E-value=84 Score=20.74 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=13.7
Q ss_pred ccCcCeEEEEeCCeEEEEEEEE
Q 031218 75 LRKEEVKVEVEDDRVLQISGQR 96 (163)
Q Consensus 75 ~~~edi~v~v~~~~~L~I~g~~ 96 (163)
|+.+.|.+....| .|.|+|+.
T Consensus 22 fd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCcE-EEEEEcce
Confidence 4556677776654 67777764
No 115
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=21.07 E-value=1.7e+02 Score=22.97 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=11.7
Q ss_pred CcCeEEEEe-CCeEEEEEEEEe
Q 031218 77 KEEVKVEVE-DDRVLQISGQRN 97 (163)
Q Consensus 77 ~edi~v~v~-~~~~L~I~g~~~ 97 (163)
++++. ++ +| .|+|++++.
T Consensus 45 ~~n~~--v~~dG-~L~I~a~~~ 63 (259)
T cd02182 45 TANVQ--LSGNG-TLQITPLRD 63 (259)
T ss_pred CcCEE--EcCCC-eEEEEEEec
Confidence 35544 44 66 799998765
No 116
>PLN02786 isochorismate synthase
Probab=20.89 E-value=87 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.3
Q ss_pred cccccceeEEEECCCeEEEEEEcC
Q 031218 50 SAFVNTRVDWKETPEAHVFKADLP 73 (163)
Q Consensus 50 ~~~~~p~~di~e~~~~~~l~~~lP 73 (163)
..++-|.+.+.+.++.+.|.+.+.
T Consensus 188 ~~f~LPriel~~~~~~~~l~~n~~ 211 (533)
T PLN02786 188 FYFIVPQVEFNELGGSSMLAATIA 211 (533)
T ss_pred EEEEeeeEEEEEECCEEEEEEEec
Confidence 345679999999999999999983
No 117
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=20.77 E-value=2.8e+02 Score=22.62 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=26.9
Q ss_pred cCcCeEEEEeCCeEEEEEEEEeeeecC--CCCcEEE---EeeeeeEEEEEEECCC
Q 031218 76 RKEEVKVEVEDDRVLQISGQRNIEKED--KSDTWHR---VERSSGMFSRRFRLPE 125 (163)
Q Consensus 76 ~~edi~v~v~~~~~L~I~g~~~~~~~~--~~~~~~~---~e~~~g~f~r~~~LP~ 125 (163)
.++++ .+.+| .|+|++.+...... .++.+.. ....+|.|+-++.||.
T Consensus 39 ~~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 39 DPDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred cCcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 34554 45566 79999876532110 0111111 2345788999999996
Done!