RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031218
(163 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 206 bits (527), Expect = 1e-69
Identities = 98/163 (60%), Positives = 116/163 (71%), Gaps = 12/163 (7%)
Query: 1 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLSASSFPSAVSSQFPGEASAFVNTRVDWK 60
MS++ RRS+VFDPF+ DPF F + E +AF N R+DWK
Sbjct: 1 MSIV------RRSNVFDPFADLWADPFDTFRSIVPAISG-----GGSETAAFANARMDWK 49
Query: 61 ETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRR 120
ETPEAHVFKADLPG++KEEVKVEVED VL +SG+R EKEDK+D WHRVERSSG F RR
Sbjct: 50 ETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRR 109
Query: 121 FRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQISG 163
FRL E+AK++ +KA +ENGVLTVTVPKAE K V+AIQISG
Sbjct: 110 FRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKP-EVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 163 bits (415), Expect = 2e-53
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 56 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSG 115
RVD KE V ADLPG+ +++V+++ +L I G+R E +++ + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEA 151
F RRF LP++A D I A+ NGVL + +PK A
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRPAA 100
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 152 bits (386), Expect = 1e-48
Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Query: 23 VWDPFRDFPLSASSFPSAVSSQFPGEASAFVNTRVDWKETPEAHVFKADLPGLRKEEVKV 82
++ ++ S + V VD E V ADL G KE++K
Sbjct: 1 MYYLGKEL--------QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKA 52
Query: 83 EVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMD-RIKASMENGVL 141
V L I +R I + + + + RLP N D I ENGVL
Sbjct: 53 RVSGQNELIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVL 108
Query: 142 TVTVPKAEEAKK 153
T+ +P A +
Sbjct: 109 TIRIPIAGTSVF 120
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 148 bits (376), Expect = 1e-46
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 8/158 (5%)
Query: 8 FGNRRSSVFDPF---SLDVWDPFRDFPLSASSFPSAVSSQFPGEASAFVNTRVDWKETPE 64
F + +F F + + + + + + S + E +
Sbjct: 7 FDSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQ 66
Query: 65 AHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVE-RSSGMFSRRFRL 123
A LPG+ KE++ + D L+I +R+ +S+ E R +L
Sbjct: 67 HIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKL 125
Query: 124 PENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQI 161
P K + A ENGVL+V +PKAE + K + I I
Sbjct: 126 PATVKEENASAKFENGVLSVILPKAESSIK---KGINI 160
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 83.8 bits (207), Expect = 4e-21
Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 5 PSFFGNRRSSVFDP-FSLDVWDPFRDFPLSASSFPSAVSSQFPGEASAFVNTRVDWKETP 63
P F + S +FD F + + ++ S F S F + +
Sbjct: 13 PFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEK 72
Query: 64 EAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRL 123
+ D+ EE+KV+V D +++ G+ E++ D + R F R++R+
Sbjct: 73 DRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKH----EERQDEHGFISRE---FHRKYRI 124
Query: 124 PENAKMDRIKASM-ENGVLTVTVPKAEEAKKAHVRAIQIS 162
P + I +S+ +GVLTV P+ + + R I I+
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPE--RTIPIT 162
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 77.8 bits (192), Expect = 8e-20
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 60 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSR 119
T + D+ +E+ V+ +D ++I+G+ ++D+ R F+R
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGV-VEITGKHA-ARQDEHGYISR------CFTR 54
Query: 120 RFRLPENAKMDRIKASM-ENGVLTVTVPKAE 149
++ LP ++ +S+ G LTV P +
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK 85
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 77.9 bits (192), Expect = 1e-19
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 60 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSR 119
P D+ EE+ V+V D +++ + E++ D + R F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARH----EERPDEHGFIARE---FHR 58
Query: 120 RFRLPENAKMDRIKASM-ENGVLTVTVPKAEEAKK 153
R+RLP + +++ GVL++ A
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQAS 93
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 77.1 bits (190), Expect = 1e-19
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 60 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSR 119
+ D+ EE+KV+V V+++ G+ E++ D + R F R
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKH----EERQDEHGFISRE---FHR 53
Query: 120 RFRLPENAKMDRIKASM-ENGVLTVTVPKAEEAKK 153
++R+P + I +SM +GVLTV P+ + +
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGP 88
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 75.7 bits (186), Expect = 8e-19
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 60 KETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSR 119
+ + V D+ E++ V+V++D V I G+ ++ D + R F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKH----NERQDDHGYISR---EFHR 59
Query: 120 RFRLPENAKMDRIKASM-ENGVLTVTVPKAEEAKKA--HVRAIQIS 162
R+RLP N + S+ +G+LT + PK A RAI +S
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 65.2 bits (158), Expect = 2e-13
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 58 DWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMF 117
+ + H+ P ++VKV + ++V + G KE+K++ E F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVT--GKEEKTENASHSEHRE--F 282
Query: 118 SRRFRLPENAKMDRIKASMENGVLTVTVPK 147
+ F PE + +A + +G++ V P
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 60.2 bits (145), Expect = 1e-11
Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 13/145 (8%)
Query: 7 FFGNRRSSVFDPFSLDVWDPFRDFPLSASSFPSAVSSQFPGEASAFVNTRVDWKETPEAH 66
F +++ + F + + P F + PGE + K+
Sbjct: 58 FSLEPFTAMDNAFESVMKEMSAIQP---REFHPELEYTQPGELDFLKDAYEVGKDGRLHF 114
Query: 67 VFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPEN 126
++ + EE+ ++ + ++ L + Q+++ D + + R LP +
Sbjct: 115 KVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMSES--------VGRSIPLPPS 165
Query: 127 AKMDRIKASM-ENGVLTVTVPKAEE 150
+ I+A++ + VL + P E
Sbjct: 166 VDRNHIQATITTDDVLVIEAPVNEP 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.010
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 11/40 (27%)
Query: 99 EKED-KSDTWHRVERSSGMFSRRFRLPENAKMDRIKASME 137
EK+ K +++ S +++ ++A IKA+ME
Sbjct: 18 EKQALK-----KLQASLKLYA-----DDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.036
Identities = 29/197 (14%), Positives = 48/197 (24%), Gaps = 90/197 (45%)
Query: 22 DVWDPFRD-------------------FPLSASSFPSAVS-SQFPGEASAFVNTRVDWKE 61
D W+ F +P ++ PS + S E
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVP---------- 335
Query: 62 TPEAHVFKADLPGLRKEEVKVEVE-------DDRVLQIS---GQRN-------------- 97
+P + L +E+V+ V + ++IS G +N
Sbjct: 336 SPMLSI-----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 98 -----IEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP------ 146
+ D R+ FS R K N L V P
Sbjct: 391 LTLRKAKAPSGLDQ-SRIP-----FSER------------KLKFSNRFLPVASPFHSHLL 432
Query: 147 -KAEEAKKAHVRAIQIS 162
A + + +S
Sbjct: 433 VPASDLINKDLVKNNVS 449
Score = 31.9 bits (72), Expect = 0.088
Identities = 26/145 (17%), Positives = 37/145 (25%), Gaps = 62/145 (42%)
Query: 4 IPSFFGNRR---SSVFDPFSLDVWDPF------------------RDFPLSASSFPSAVS 42
IP F R+ S+ F P + PF + +A V
Sbjct: 407 IP--FSERKLKFSNRFLPVAS----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 43 SQFPGE-------------ASAFVNTRVDWKETPEA---HVFKADL-PGLRKEEVKVEVE 85
F G + V W+ T + H+ D PG
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--DFGPG----------- 507
Query: 86 DDRVLQISGQRNIEKEDKSDTWHRV 110
SG + +K T RV
Sbjct: 508 -----GASGLGVLTHRNKDGTGVRV 527
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 32.2 bits (73), Expect = 0.055
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 25/82 (30%)
Query: 72 LPGLRKEEVKV-EVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPEN-AKM 129
LPG K++VK+ + + ++ QR R LP +
Sbjct: 313 LPGFDKKQVKLTQYGPEVTVEAGDQR----------------------RNIFLPPALSGR 350
Query: 130 DRIKASMENGVLTVT-VPKAEE 150
A +N L ++ +
Sbjct: 351 PITGAKFQNNYLIISFLEHHHH 372
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.22
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 35/138 (25%)
Query: 15 VFDPFSLDVWDP--FRDFPLSA-----SSFPSAVSSQFPGEASAFVNTRVDWKETPE--- 64
V +V + + F LS + F + TP+
Sbjct: 249 VLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 65 ---AHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRF 121
L +E + + R L I + D TW +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT---NPRRLSIIAES---IRDGLATW-----------DNW 347
Query: 122 RLPENAKMDR-IKASMEN 138
+ K+ I++S+
Sbjct: 348 KHVNCDKLTTIIESSLNV 365
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics
consortium, leukemia, apoptosis, SGC, HY initiation
factor, nucleus; 2.50A {Homo sapiens}
Length = 138
Score = 27.7 bits (61), Expect = 1.3
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 19/81 (23%)
Query: 69 KADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAK 128
D+P +++ + ++ D L + +ED RLPE
Sbjct: 65 NMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVRED------------------LRLPEGDL 106
Query: 129 MDRIKASMENG-VLTVTVPKA 148
I+ + G + +TV A
Sbjct: 107 GKEIEQKYDCGEEILITVLSA 127
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 26.7 bits (59), Expect = 1.8
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 56 RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 89
R ++ + PE V G+ K+ V ++ + +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 26.4 bits (58), Expect = 2.3
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 54 NTRVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV 89
+ DW +T V + ++K +V VE + +
Sbjct: 9 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 26.1 bits (58), Expect = 5.6
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 116 MFSRRFRLPENAKMDRIKASMENGVLTVTVPK------AEEAKKAH 155
MF + ++ + ++ G L T+ A K+AH
Sbjct: 297 MFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAH 342
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 26.3 bits (56), Expect = 6.5
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 105 DTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQI 161
D ++ + F++P N + G+ T+ E+ ++
Sbjct: 172 DMVEEIDHIGIISFPDFKIPSNPRY---------GMWTIKAKYKEDFSTTGTAYFEV 219
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 25.9 bits (58), Expect = 6.7
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 69 KADLPGLRKEEVKVEVED------DRVLQISG 94
K DLP E V E+ED ++ S
Sbjct: 132 KIDLPAADPERVAEEIEDIVGIDATDAVRCSA 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 25.9 bits (58), Expect = 6.9
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 69 KADLPGLRKEEVKVEVED------DRVLQISG 94
K DLP + VK ++E+ + + S
Sbjct: 134 KIDLPSADVDRVKKQIEEVLGLDPEEAILASA 165
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2
domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Length = 102
Score = 25.0 bits (54), Expect = 8.2
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 105 DTWHRVERSSGMFSRRFRLPENAKMD--RIKASMENGVLTVT 144
W + G+ F L ++ ++G T
Sbjct: 51 AQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEH 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,467,208
Number of extensions: 136213
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 34
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)