RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031218
         (163 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score =  138 bits (348), Expect = 4e-43
 Identities = 97/153 (63%), Positives = 113/153 (73%), Gaps = 6/153 (3%)

Query: 11  RRSSVFDPFSLDVWDPFRDFPLSASSFPSAVSSQFPGEASAFVNTRVDWKETPEAHVFKA 70
           RRS+VFDPF+    DPF  F     +      S    E +AF N R+DWKETPEAHVFKA
Sbjct: 4   RRSNVFDPFADLWADPFDTFRSIVPAI-----SGGGSETAAFANARMDWKETPEAHVFKA 58

Query: 71  DLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMD 130
           DLPG++KEEVKVEVED  VL +SG+R  EKEDK+D WHRVERSSG F RRFRL E+AK++
Sbjct: 59  DLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE 118

Query: 131 RIKASMENGVLTVTVPKAEEAKKAHVRAIQISG 163
            +KA +ENGVLTVTVPKAE  K   V+AIQISG
Sbjct: 119 EVKAGLENGVLTVTVPKAEVKKP-EVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 93.6 bits (232), Expect = 5e-26
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 57  VDWKETPEAHVFKADLPGLRKEEVKVEVEDDRVLQISGQRNIEKEDKSDTWHRVERSSGM 116
           +   E  +     A LPG+ KE++ +    D +   + +  +   +     +        
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 117 FSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKAHVRAIQI 161
             R  +LP   K +   A  ENGVL+V +PKAE + K   + I I
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK---KGINI 114


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 30.3 bits (68), Expect = 0.036
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 18/98 (18%)

Query: 56  RVDWKETPEAHVFKADLPGLRKEEVKVEVEDDRV-LQISGQRNIEKEDKSDTWHRVERSS 114
           + DW +T    V    +  ++K +V VE  +  +   +      +   K +  H +    
Sbjct: 4   KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPI---- 59

Query: 115 GMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAK 152
                          ++    + +  + + + K E  +
Sbjct: 60  -------------IPEQSTFKVLSTKIEIKLKKPEAVR 84


>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 24.7 bits (54), Expect = 2.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 31 PLSASSFPSAVSSQFPGEASAFVNTR 56
          P++A+SF   + S F G  +  + TR
Sbjct: 37 PVNAASFGKLIRSVFMGLRTRRLGTR 62


>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 115

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 119 RRFRLPENAKMDRIKASM---ENGVLTVTV 145
           R  RLPE   +  +  SM   E G+  + +
Sbjct: 1   RSIRLPETIDLGALYLSMKDTEKGIKELNL 30


>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 151

 Score = 23.6 bits (51), Expect = 9.9
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 43 SQFPGEASAFVNTRVDWKETPEAHVFKADLPGLRKEEVKVEVE 85
          +    +A  FV  ++     PE  V   DL  + ++ V+   +
Sbjct: 2  ASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAK 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 600,366
Number of extensions: 25859
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 8
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)