BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031219
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 248 bits (634), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 119/155 (76%), Positives = 137/155 (88%), Gaps = 1/155 (0%)
Query: 4 VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGY 63
VSQAV+DGGRHV+G+IPKTL PRE+TG+TVGEV+AV+ HQRKAE A+ +DAFIALPGGY
Sbjct: 61 VSQAVHDGGRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGY 120
Query: 64 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123
GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV+EGFI+P AR IIVSA T
Sbjct: 121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT 180
Query: 124 AHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNK 158
A EL+ KLEEY P H VA+ L WE E ++GY+++
Sbjct: 181 AKELVKKLEEYAPCHERVATKLCWEXE-RIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 120/157 (76%)
Query: 4 VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGY 63
+S+ VY+GG HVLG+IPK L P EI+G+TVG+V+ V+ H+RKA A++A+AFIALPGGY
Sbjct: 57 ISRRVYEGGLHVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGY 116
Query: 64 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123
GT EELLE ITW+QLGIH K VGLLNVDGYYN+LL+ D V+EGFI P AR I+VSA T
Sbjct: 117 GTXEELLEXITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPT 176
Query: 124 AHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSD 160
A EL K EEY P H VAS+ SW++E+ Y + +
Sbjct: 177 AKELXEKXEEYTPSHXHVASHESWKVEELGDYPGQEN 213
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 79/133 (59%)
Query: 2 GLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPG 61
G ++ A+ + G +GV P L E+ + E+ V+G H+RKA+ + AD FI+ PG
Sbjct: 47 GTIADAIXENGGTAIGVXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPG 106
Query: 62 GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121
G+GT EEL EV+ WAQ+GIH KP+GL NV+GY+ + ++ EGF + +I S+
Sbjct: 107 GFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSS 166
Query: 122 QTAHELICKLEEY 134
ELI + + Y
Sbjct: 167 SRPDELIEQXQNY 179
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 70/111 (63%)
Query: 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
MG V+QA G H +GVIPK L+ RE+ E+ M +RK EM ++DAFIALP
Sbjct: 66 MGAVAQAARAKGGHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALP 125
Query: 61 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA 111
GG GTLEE E T LG+HDKP+ LL+ G+Y+ LL+++ V G+++
Sbjct: 126 GGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVS 176
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
MG VS A G +GVIPK L+ RE+ E+ M +RK M +A+AFI LP
Sbjct: 57 MGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVMEDRANAFITLP 116
Query: 61 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA--RYII 118
GG GTL+ELL+V T LG+HDK + +L+ G+++ L +++ + D G+++ A R I+
Sbjct: 117 GGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIV 176
Query: 119 V 119
V
Sbjct: 177 V 177
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 45 RKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDK 103
RK R A F+ LPGG+GTL+EL EV+ Q +H PV LL+ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 104 AVDEGFIAPAARYIIVSAQTAHELICKLEEYVP 136
D+ + P + E++ L+ P
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALKAEAP 215
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 16 LGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 75
LG+ +++ E V E+ + +R R A I PGG GT EELL +
Sbjct: 211 LGLTEPSIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI--- 267
Query: 76 AQLGIHDKP-----------VGLLNVDGYYNSLLSFIDKAVDEG 108
LGI P G + Y+ SL FI + E
Sbjct: 268 --LGIXXHPENADQPXPIVLTGPKQSEAYFRSLDKFITDTLGEA 309
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
+G Q V +GGR+ LG+ ++ E V E+ + + +R R A + P
Sbjct: 196 IGHAKQRV-EGGRY-LGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFP 253
Query: 61 GGYGTLEELL 70
GG GT EELL
Sbjct: 254 GGAGTAEELL 263
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 4 VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVK-AVSGMHQRKAEMARQADAFIALPGG 62
+++ V G V+GV P + +++ + + QR + ++ALPGG
Sbjct: 48 LARGVKAKGGLVVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLALPGG 107
Query: 63 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS 99
GTL EL V+ W L + L VD Y+ LL
Sbjct: 108 VGTLAEL--VLAWNLLYLRRGVGRPLAVDPYWLGLLK 142
>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 330
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 23 LMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHD 82
++PR + G V G+ R+ E A++ +A+P YG+ EEL + D
Sbjct: 16 IVPRFVAGLRESAQAEVRGIASRRLENAQKXAKELAIPVAYGSYEELCK----------D 65
Query: 83 KPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 133
+ + ++ + Y S A+ +G + ++A A EL +E
Sbjct: 66 ETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 76 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 132
AQ D P G L VD S F DK EG I A+ +++SA A ++ +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 133 --EYVPKHSGVASNLS 146
EY P V SN S
Sbjct: 150 QHEYSPASHHVVSNAS 165
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 76 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 132
AQ D P G L VD S F DK EG I A+ +++SA A ++ +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 133 --EYVPKHSGVASNLS 146
EY P V SN S
Sbjct: 150 QHEYSPASHHVVSNAS 165
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 3 LVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGM--HQRKAEMARQADAFIALP 60
LVSQ V + G V+G++P E G+ V +G+ R + R AD +++
Sbjct: 72 LVSQGVREAGGTVVGILPD-----EEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIG 126
Query: 61 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS 99
G GT +E++ LG KPV LL G + +S
Sbjct: 127 GEIGT---AIEILGAYALG---KPVILLRGTGGWTDRIS 159
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 76 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 132
AQ D P G L V+ S F KA EG + AR +++SA A L+ +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 133 --EYVPKHSGVASNLS 146
EY P V SN S
Sbjct: 150 HHEYNPSEHHVVSNAS 165
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 76 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT---AHELICKLE 132
AQ D P G L V+ S F KA EG + AR +++SA A L+ +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 133 --EYVPKHSGVASNLS 146
EY P V SN S
Sbjct: 150 HHEYNPSEHHVVSNAS 165
>pdb|3B7M|A Chain A, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
pdb|3B7M|B Chain B, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
pdb|3B7M|C Chain C, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
pdb|3B7M|D Chain D, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
Length = 216
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 97 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELI 128
L +FID AV G+I P + ++S QT EL
Sbjct: 171 LKAFIDDAVARGYIRP--EWYLLSVQTGFELF 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,188,420
Number of Sequences: 62578
Number of extensions: 207775
Number of successful extensions: 443
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 23
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)