Query 031219
Match_columns 163
No_of_seqs 124 out of 1097
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03641 Lysine_decarbox: Poss 100.0 7.1E-45 1.5E-49 274.1 14.2 131 1-131 1-133 (133)
2 TIGR00730 conserved hypothetic 100.0 3.4E-44 7.4E-49 282.8 15.1 134 1-134 45-178 (178)
3 COG1611 Predicted Rossmann fol 100.0 2.5E-35 5.3E-40 237.0 14.6 137 1-137 59-198 (205)
4 TIGR00725 conserved hypothetic 100.0 3E-31 6.5E-36 205.7 13.0 116 1-131 43-158 (159)
5 TIGR00732 dprA DNA protecting 98.1 4.8E-05 1E-09 61.9 11.0 113 2-130 87-219 (220)
6 PF05014 Nuc_deoxyrib_tr: Nucl 96.4 0.0067 1.5E-07 43.7 4.6 47 39-91 48-98 (113)
7 PF02481 DNA_processg_A: DNA r 96.3 0.031 6.7E-07 45.2 8.9 99 3-108 88-206 (212)
8 PRK10736 hypothetical protein; 93.7 1.3 2.8E-05 39.0 11.5 113 4-132 152-284 (374)
9 PF13528 Glyco_trans_1_3: Glyc 93.4 0.6 1.3E-05 38.4 8.6 71 44-133 242-316 (318)
10 PF11071 DUF2872: Protein of u 90.9 3.5 7.6E-05 31.4 9.2 114 3-132 13-137 (141)
11 PF04101 Glyco_tran_28_C: Glyc 88.0 0.48 1E-05 35.7 2.7 54 46-109 66-120 (167)
12 TIGR03646 YtoQ_fam YtoQ family 87.4 8 0.00017 29.5 8.9 114 3-132 16-140 (144)
13 PF12694 MoCo_carrier: Putativ 85.7 7.9 0.00017 29.8 8.3 82 3-90 12-98 (145)
14 COG3613 Nucleoside 2-deoxyribo 84.4 9.5 0.00021 30.2 8.4 43 43-91 59-107 (172)
15 PRK13608 diacylglycerol glucos 84.2 5.5 0.00012 34.4 7.8 72 44-135 265-336 (391)
16 TIGR01426 MGT glycosyltransfer 83.9 8.3 0.00018 32.9 8.7 70 48-135 287-357 (392)
17 PLN02605 monogalactosyldiacylg 83.4 5.1 0.00011 34.3 7.2 72 44-135 274-345 (382)
18 cd03784 GT1_Gtf_like This fami 81.9 22 0.00048 30.2 10.5 71 48-135 300-370 (401)
19 PRK13609 diacylglycerol glucos 80.3 12 0.00026 31.7 8.3 72 44-135 265-336 (380)
20 COG0758 Smf Predicted Rossmann 79.9 11 0.00024 33.0 7.9 82 3-90 155-255 (350)
21 PF06258 Mito_fiss_Elm1: Mitoc 78.8 7.9 0.00017 33.1 6.7 78 47-133 223-307 (311)
22 TIGR01133 murG undecaprenyldip 78.6 14 0.0003 30.5 8.0 74 46-135 244-319 (348)
23 PRK00726 murG undecaprenyldiph 77.1 19 0.00041 30.0 8.5 81 39-136 239-323 (357)
24 cd03785 GT1_MurG MurG is an N- 76.6 25 0.00054 28.9 9.0 76 44-135 244-322 (350)
25 PF13607 Succ_CoA_lig: Succiny 74.6 17 0.00036 27.4 6.7 78 42-131 42-135 (138)
26 TIGR00661 MJ1255 conserved hyp 74.3 11 0.00023 31.6 6.2 55 44-109 239-293 (321)
27 CHL00200 trpA tryptophan synth 73.9 19 0.00042 30.0 7.6 46 58-108 69-119 (263)
28 PRK10565 putative carbohydrate 72.6 13 0.00029 33.8 6.8 110 4-131 273-383 (508)
29 COG1819 Glycosyl transferases, 71.1 11 0.00023 33.3 5.7 79 3-98 256-334 (406)
30 cd03786 GT1_UDP-GlcNAc_2-Epime 70.7 20 0.00044 29.7 7.1 69 43-136 268-336 (363)
31 TIGR03590 PseG pseudaminic aci 70.3 7.1 0.00015 32.3 4.2 39 41-90 230-268 (279)
32 cd03795 GT1_like_4 This family 70.3 29 0.00063 28.1 7.8 73 43-135 254-330 (357)
33 PRK05749 3-deoxy-D-manno-octul 69.1 40 0.00087 29.0 8.8 72 45-135 312-386 (425)
34 smart00046 DAGKc Diacylglycero 68.8 6.4 0.00014 28.7 3.2 34 56-89 52-85 (124)
35 PRK02645 ppnK inorganic polyph 66.7 9.8 0.00021 32.3 4.4 53 51-109 56-117 (305)
36 cd03820 GT1_amsD_like This fam 66.5 44 0.00095 26.2 7.9 73 43-135 243-317 (348)
37 PRK00696 sucC succinyl-CoA syn 65.8 44 0.00096 29.0 8.4 71 53-134 311-384 (388)
38 PRK00025 lpxB lipid-A-disaccha 65.1 20 0.00043 30.2 6.0 33 46-89 255-287 (380)
39 TIGR03088 stp2 sugar transfera 64.9 31 0.00067 28.8 7.1 69 46-135 266-336 (374)
40 cd03804 GT1_wbaZ_like This fam 64.7 38 0.00082 27.9 7.5 73 43-136 252-325 (351)
41 PRK12446 undecaprenyldiphospho 63.5 53 0.0011 28.1 8.4 73 47-134 247-322 (352)
42 PRK06029 3-octaprenyl-4-hydrox 63.1 22 0.00048 28.2 5.5 81 52-133 78-168 (185)
43 COG0707 MurG UDP-N-acetylgluco 62.9 68 0.0015 27.9 9.0 83 37-136 237-323 (357)
44 cd07025 Peptidase_S66 LD-Carbo 62.7 16 0.00034 30.6 4.8 62 39-107 44-110 (282)
45 TIGR00421 ubiX_pad polyprenyl 62.5 22 0.00049 27.9 5.4 82 51-133 74-165 (181)
46 cd01170 THZ_kinase 4-methyl-5- 61.6 31 0.00066 28.1 6.3 66 1-91 20-87 (242)
47 TIGR03449 mycothiol_MshA UDP-N 61.6 43 0.00094 28.2 7.5 72 43-135 293-366 (405)
48 PF00781 DAGK_cat: Diacylglyce 61.5 7.3 0.00016 28.3 2.4 47 41-89 40-89 (130)
49 PF11834 DUF3354: Domain of un 60.9 20 0.00044 24.0 4.2 33 54-92 19-51 (69)
50 PF07279 DUF1442: Protein of u 60.6 60 0.0013 26.6 7.7 74 3-82 60-142 (218)
51 cd00411 Asparaginase Asparagin 60.0 27 0.00058 29.9 5.9 49 52-103 78-131 (323)
52 PF05159 Capsule_synth: Capsul 59.9 9.2 0.0002 31.2 2.9 37 48-96 195-231 (269)
53 KOG4175 Tryptophan synthase al 59.6 46 0.00099 27.5 6.8 33 65-100 78-110 (268)
54 COG0159 TrpA Tryptophan syntha 58.6 54 0.0012 27.7 7.3 64 58-131 71-139 (265)
55 PF14359 DUF4406: Domain of un 58.3 18 0.00039 25.4 3.8 37 44-86 51-90 (92)
56 PRK09922 UDP-D-galactose:(gluc 58.0 64 0.0014 27.0 7.8 77 41-137 246-324 (359)
57 TIGR00519 asnASE_I L-asparagin 57.7 30 0.00066 29.8 5.9 51 50-103 75-130 (336)
58 cd03794 GT1_wbuB_like This fam 57.6 49 0.0011 26.3 6.8 82 35-135 276-363 (394)
59 cd03822 GT1_ecORF704_like This 57.5 40 0.00087 27.0 6.3 72 43-136 258-333 (366)
60 cd03823 GT1_ExpE7_like This fa 57.5 51 0.0011 26.2 6.9 73 43-136 253-328 (359)
61 PRK13111 trpA tryptophan synth 57.5 60 0.0013 27.0 7.4 48 58-109 66-118 (258)
62 cd03808 GT1_cap1E_like This fa 57.5 68 0.0015 25.2 7.6 74 43-135 254-327 (359)
63 cd04951 GT1_WbdM_like This fam 56.8 39 0.00084 27.4 6.2 69 46-135 256-324 (360)
64 TIGR02113 coaC_strep phosphopa 56.4 22 0.00048 27.8 4.4 84 50-134 74-176 (177)
65 cd04180 UGPase_euk_like Eukary 56.2 38 0.00083 28.1 6.1 68 55-135 2-76 (266)
66 PLN02591 tryptophan synthase 55.9 70 0.0015 26.5 7.5 46 59-109 57-107 (250)
67 cd03799 GT1_amsK_like This is 55.4 55 0.0012 26.4 6.9 72 43-135 246-325 (355)
68 cd07062 Peptidase_S66_mccF_lik 54.7 16 0.00036 30.8 3.7 66 39-111 48-119 (308)
69 PRK15484 lipopolysaccharide 1, 54.6 71 0.0015 27.2 7.7 71 44-135 268-342 (380)
70 cd03816 GT1_ALG1_like This fam 54.5 1.1E+02 0.0024 26.4 9.0 73 43-136 305-380 (415)
71 COG0163 UbiX 3-polyprenyl-4-hy 54.3 25 0.00054 28.3 4.4 80 53-133 81-170 (191)
72 COG3660 Predicted nucleoside-d 54.1 35 0.00076 29.3 5.4 60 47-115 239-299 (329)
73 TIGR00236 wecB UDP-N-acetylglu 53.9 69 0.0015 26.9 7.4 75 36-135 257-332 (365)
74 PF00534 Glycos_transf_1: Glyc 53.8 65 0.0014 23.5 6.5 79 36-135 75-156 (172)
75 PRK14046 malate--CoA ligase su 53.7 1.2E+02 0.0025 26.8 9.0 72 53-134 311-384 (392)
76 cd05844 GT1_like_7 Glycosyltra 53.3 81 0.0018 25.8 7.6 72 44-136 256-335 (367)
77 cd03825 GT1_wcfI_like This fam 53.2 85 0.0018 25.4 7.6 71 44-135 256-328 (365)
78 cd01400 6PGL 6PGL: 6-Phosphogl 52.6 83 0.0018 25.1 7.3 44 49-94 19-62 (219)
79 PF06908 DUF1273: Protein of u 52.0 15 0.00033 28.9 2.8 48 41-89 118-167 (177)
80 PRK15427 colanic acid biosynth 51.7 70 0.0015 27.8 7.2 71 44-135 290-368 (406)
81 cd03801 GT1_YqgM_like This fam 51.7 70 0.0015 25.0 6.7 71 44-135 267-339 (374)
82 cd06424 UGGPase UGGPase cataly 51.5 36 0.00077 29.4 5.3 68 55-134 2-77 (315)
83 cd04962 GT1_like_5 This family 51.2 77 0.0017 25.9 7.2 69 45-134 263-333 (371)
84 cd03818 GT1_ExpC_like This fam 50.3 73 0.0016 27.0 7.1 72 43-135 291-364 (396)
85 PF13692 Glyco_trans_1_4: Glyc 50.2 64 0.0014 22.5 5.8 77 36-134 55-132 (135)
86 PF05690 ThiG: Thiazole biosyn 49.7 15 0.00032 30.7 2.5 39 46-90 167-205 (247)
87 cd03802 GT1_AviGT4_like This f 49.6 1.1E+02 0.0024 24.5 7.7 68 44-134 235-305 (335)
88 cd03800 GT1_Sucrose_synthase T 48.7 53 0.0011 27.1 5.8 69 46-135 296-366 (398)
89 PLN02275 transferase, transfer 48.6 1.6E+02 0.0034 25.0 8.9 70 43-133 297-369 (371)
90 PRK13660 hypothetical protein; 47.1 1.3E+02 0.0029 23.8 7.5 47 42-89 119-167 (182)
91 PF03492 Methyltransf_7: SAM d 46.8 21 0.00046 30.7 3.2 43 92-134 198-243 (334)
92 cd03807 GT1_WbnK_like This fam 46.4 69 0.0015 25.3 6.0 67 46-135 262-330 (365)
93 cd03819 GT1_WavL_like This fam 46.1 1.5E+02 0.0033 23.9 8.1 70 43-133 254-326 (355)
94 COG0063 Predicted sugar kinase 45.9 1.9E+02 0.004 24.5 9.6 114 4-132 51-168 (284)
95 cd06259 YdcF-like YdcF-like. Y 45.7 1E+02 0.0022 22.4 6.5 11 54-64 1-11 (150)
96 TIGR00215 lpxB lipid-A-disacch 45.6 62 0.0013 28.0 5.9 75 49-136 264-346 (385)
97 TIGR02153 gatD_arch glutamyl-t 44.6 57 0.0012 29.0 5.6 49 53-103 140-193 (404)
98 cd04728 ThiG Thiazole synthase 44.6 1.1E+02 0.0024 25.6 6.9 33 43-75 164-196 (248)
99 cd03812 GT1_CapH_like This fam 44.4 1E+02 0.0022 25.0 6.8 72 43-136 257-330 (358)
100 cd01408 SIRT1 SIRT1: Eukaryoti 44.4 72 0.0016 25.9 5.8 71 42-131 165-235 (235)
101 PF01985 CRS1_YhbY: CRS1 / Yhb 44.0 31 0.00066 23.6 3.1 58 75-134 9-67 (84)
102 PRK07313 phosphopantothenoylcy 43.9 87 0.0019 24.5 6.0 87 49-136 74-179 (182)
103 cd04197 eIF-2B_epsilon_N The N 43.6 39 0.00085 26.4 4.1 62 56-134 3-67 (217)
104 PRK13337 putative lipid kinase 43.4 1.2E+02 0.0026 25.2 7.2 30 56-88 60-89 (304)
105 PF04127 DFP: DNA / pantothena 42.5 34 0.00074 27.0 3.5 52 3-58 34-88 (185)
106 TIGR03702 lip_kinase_YegS lipi 42.5 69 0.0015 26.5 5.6 33 55-89 54-87 (293)
107 PRK04183 glutamyl-tRNA(Gln) am 42.4 71 0.0015 28.6 5.9 48 53-103 153-205 (419)
108 PRK13278 purP 5-formaminoimida 42.4 1.1E+02 0.0024 26.7 7.0 60 4-63 32-95 (358)
109 PF09152 DUF1937: Domain of un 42.3 20 0.00044 26.5 2.0 37 46-88 73-114 (116)
110 TIGR01105 galF UTP-glucose-1-p 42.0 31 0.00067 29.1 3.4 61 55-132 5-68 (297)
111 PF00290 Trp_syntA: Tryptophan 41.9 40 0.00086 28.2 4.0 40 65-107 70-110 (259)
112 PF06849 DUF1246: Protein of u 41.9 53 0.0012 24.6 4.2 59 4-62 12-74 (124)
113 COG2515 Acd 1-aminocyclopropan 41.5 94 0.002 27.0 6.2 57 41-101 170-226 (323)
114 COG4671 Predicted glycosyl tra 41.0 2.1E+02 0.0046 25.5 8.4 78 40-134 282-362 (400)
115 PHA01630 putative group 1 glyc 40.5 1.6E+02 0.0034 25.0 7.6 46 43-97 200-247 (331)
116 KOG3349 Predicted glycosyltran 40.1 71 0.0015 25.1 4.8 51 49-109 77-128 (170)
117 cd03814 GT1_like_2 This family 40.1 1.3E+02 0.0029 23.9 6.8 71 44-135 258-330 (364)
118 cd01171 YXKO-related B.subtili 39.8 93 0.002 24.9 5.8 82 5-92 28-113 (254)
119 PRK09461 ansA cytoplasmic aspa 39.7 83 0.0018 27.1 5.7 51 51-103 80-135 (335)
120 PRK00208 thiG thiazole synthas 39.7 1.5E+02 0.0032 24.9 7.0 33 43-75 164-196 (250)
121 KOG3614 Ca2+/Mg2+-permeable ca 39.6 34 0.00073 35.0 3.6 55 55-113 271-326 (1381)
122 cd04949 GT1_gtfA_like This fam 39.6 1E+02 0.0022 25.6 6.1 69 48-136 274-344 (372)
123 PRK13054 lipid kinase; Reviewe 39.5 81 0.0018 26.2 5.6 33 55-88 58-90 (300)
124 cd03821 GT1_Bme6_like This fam 39.5 1.6E+02 0.0034 23.3 7.1 69 44-135 273-343 (375)
125 cd03805 GT1_ALG2_like This fam 39.5 1.7E+02 0.0038 24.2 7.6 70 44-135 291-362 (392)
126 KOG4435 Predicted lipid kinase 39.2 58 0.0013 29.5 4.7 60 35-98 96-157 (535)
127 cd03798 GT1_wlbH_like This fam 38.9 1.2E+02 0.0026 23.8 6.3 72 44-136 270-343 (377)
128 PLN02871 UDP-sulfoquinovose:DA 38.6 1.3E+02 0.0029 26.3 7.0 74 44-135 323-398 (465)
129 PRK09355 hydroxyethylthiazole 38.2 34 0.00073 28.2 3.0 42 47-92 49-93 (263)
130 PF04230 PS_pyruv_trans: Polys 38.2 44 0.00096 25.7 3.6 41 51-91 62-108 (286)
131 TIGR01198 pgl 6-phosphoglucono 37.9 2.2E+02 0.0047 23.0 8.1 42 50-94 25-66 (233)
132 PRK11780 isoprenoid biosynthes 37.7 39 0.00085 27.3 3.3 13 56-68 88-100 (217)
133 TIGR01016 sucCoAbeta succinyl- 37.3 2.1E+02 0.0045 24.8 7.9 70 53-133 311-383 (386)
134 PRK13059 putative lipid kinase 37.1 1.5E+02 0.0033 24.6 6.8 30 56-88 59-88 (295)
135 PF02016 Peptidase_S66: LD-car 36.5 9 0.0002 32.1 -0.7 65 39-110 44-114 (284)
136 PTZ00075 Adenosylhomocysteinas 36.4 1.4E+02 0.0031 27.2 6.9 78 3-96 268-346 (476)
137 PF01320 Colicin_Pyocin: Colic 36.2 29 0.00063 24.3 1.9 62 65-137 11-77 (85)
138 TIGR03087 stp1 sugar transfera 35.7 1.2E+02 0.0025 25.8 6.1 66 47-135 292-360 (397)
139 PRK10494 hypothetical protein; 35.1 83 0.0018 26.0 4.9 12 52-63 78-89 (259)
140 PF04007 DUF354: Protein of un 35.0 2.4E+02 0.0052 24.4 7.8 64 48-134 244-307 (335)
141 PRK13055 putative lipid kinase 34.8 41 0.00088 28.6 3.1 32 53-88 60-91 (334)
142 PLN02496 probable phosphopanto 34.7 69 0.0015 26.0 4.2 88 48-135 92-197 (209)
143 PRK11253 ldcA L,D-carboxypepti 34.3 1.2E+02 0.0026 25.7 5.8 67 39-110 47-122 (305)
144 PRK13957 indole-3-glycerol-pho 34.1 1.2E+02 0.0025 25.3 5.6 57 6-73 165-221 (247)
145 PF14947 HTH_45: Winged helix- 33.9 63 0.0014 21.5 3.3 40 94-134 33-72 (77)
146 COG0148 Eno Enolase [Carbohydr 33.6 1.5E+02 0.0033 26.6 6.4 77 36-113 311-387 (423)
147 cd04193 UDPGlcNAc_PPase UDPGlc 33.5 1.8E+02 0.0038 25.0 6.8 75 48-133 9-93 (323)
148 PRK03708 ppnK inorganic polyph 33.5 89 0.0019 26.2 4.9 32 52-90 57-88 (277)
149 PF01182 Glucosamine_iso: Gluc 33.5 1.7E+02 0.0036 22.9 6.2 45 49-94 17-62 (199)
150 PF00710 Asparaginase: Asparag 33.3 1.2E+02 0.0025 25.8 5.6 37 51-89 71-107 (313)
151 cd06320 PBP1_allose_binding Pe 33.1 77 0.0017 24.9 4.3 36 50-90 55-90 (275)
152 PF04412 DUF521: Protein of un 33.0 3.6E+02 0.0077 24.1 9.1 95 14-108 246-348 (400)
153 PLN02668 indole-3-acetate carb 32.7 49 0.0011 29.3 3.3 41 94-134 255-299 (386)
154 PRK14138 NAD-dependent deacety 32.7 1.3E+02 0.0028 24.6 5.6 71 43-134 169-240 (244)
155 PF00483 NTP_transferase: Nucl 32.5 58 0.0013 25.6 3.4 62 57-134 3-68 (248)
156 TIGR00196 yjeF_cterm yjeF C-te 32.3 2.8E+02 0.006 22.6 8.2 75 11-91 51-127 (272)
157 PRK04155 chaperone protein Hch 32.2 43 0.00092 28.3 2.7 35 55-89 149-187 (287)
158 PTZ00187 succinyl-CoA syntheta 32.1 2.8E+02 0.0061 23.9 7.8 88 41-134 211-312 (317)
159 PRK05333 NAD-dependent deacety 32.1 1.8E+02 0.004 24.2 6.6 72 43-135 205-277 (285)
160 COG2022 ThiG Uncharacterized e 32.1 56 0.0012 27.4 3.3 39 46-90 174-212 (262)
161 COG0252 AnsB L-asparaginase/ar 31.5 1.4E+02 0.003 26.2 5.8 34 54-90 102-135 (351)
162 PF02729 OTCace_N: Aspartate/o 31.5 2.2E+02 0.0048 21.3 8.4 79 5-103 58-136 (142)
163 PHA03359 UL17 tegument protein 31.0 25 0.00055 33.4 1.2 18 54-71 649-666 (686)
164 cd03132 GATase1_catalase Type 30.9 2E+02 0.0044 20.6 6.4 62 54-127 64-129 (142)
165 cd03133 GATase1_ES1 Type 1 glu 30.8 55 0.0012 26.4 3.1 13 56-68 85-97 (213)
166 CHL00162 thiG thiamin biosynth 30.8 53 0.0011 27.8 3.0 30 46-75 181-210 (267)
167 cd01411 SIR2H SIR2H: Uncharact 30.5 64 0.0014 26.0 3.4 45 43-91 162-206 (225)
168 COG0787 Alr Alanine racemase [ 30.3 2.3E+02 0.0049 24.9 7.0 67 48-134 50-116 (360)
169 cd01356 AcnX_swivel Putative A 30.2 1E+02 0.0022 23.0 4.1 36 52-87 42-77 (123)
170 TIGR01099 galU UTP-glucose-1-p 30.2 62 0.0013 25.8 3.3 60 56-132 3-65 (260)
171 cd06313 PBP1_ABC_sugar_binding 30.1 99 0.0021 24.6 4.5 38 48-90 51-88 (272)
172 KOG1718 Dual specificity phosp 30.0 55 0.0012 26.2 2.8 51 53-104 95-155 (198)
173 PRK05583 ribosomal protein L7A 29.9 1.7E+02 0.0036 20.9 5.1 82 8-103 12-100 (104)
174 cd06300 PBP1_ABC_sugar_binding 29.9 1.1E+02 0.0024 23.9 4.7 38 48-90 56-93 (272)
175 PRK05920 aromatic acid decarbo 29.7 90 0.0019 25.1 4.1 81 52-133 93-183 (204)
176 cd03817 GT1_UGDG_like This fam 29.2 2.8E+02 0.006 21.9 7.0 41 43-91 269-311 (374)
177 TIGR02919 accessory Sec system 29.2 2.8E+02 0.006 24.9 7.5 80 40-135 315-409 (438)
178 cd03148 GATase1_EcHsp31_like T 29.0 33 0.00072 27.9 1.5 35 55-89 98-136 (232)
179 cd03811 GT1_WabH_like This fam 28.7 2.5E+02 0.0055 21.7 6.6 36 48-91 259-296 (353)
180 KOG1584 Sulfotransferase [Gene 28.6 78 0.0017 27.2 3.7 32 61-102 152-183 (297)
181 cd06309 PBP1_YtfQ_like Peripla 28.6 1.2E+02 0.0026 23.8 4.7 38 48-90 51-88 (273)
182 COG1679 Predicted aconitase [G 28.6 4.3E+02 0.0094 23.7 9.2 102 4-108 235-348 (403)
183 PLN02461 Probable pyruvate kin 28.6 1.7E+02 0.0038 26.9 6.2 83 43-135 248-353 (511)
184 PTZ00378 hypothetical protein; 28.5 78 0.0017 29.3 3.9 68 44-113 388-457 (518)
185 PRK09427 bifunctional indole-3 28.4 1.4E+02 0.0029 27.1 5.4 56 6-72 173-228 (454)
186 PRK11914 diacylglycerol kinase 28.4 75 0.0016 26.4 3.6 28 56-88 67-94 (306)
187 PHA03392 egt ecdysteroid UDP-g 28.4 4.5E+02 0.0098 23.8 10.0 59 36-108 348-407 (507)
188 TIGR02699 archaeo_AfpA archaeo 28.4 1.7E+02 0.0037 22.9 5.4 38 52-89 78-122 (174)
189 PRK10122 GalU regulator GalF; 28.0 71 0.0015 26.8 3.4 60 56-132 6-68 (297)
190 cd02508 ADP_Glucose_PP ADP-glu 27.9 1.3E+02 0.0028 23.0 4.7 62 57-133 2-65 (200)
191 PF09353 DUF1995: Domain of un 27.9 96 0.0021 24.5 4.0 39 53-97 98-136 (209)
192 cd02172 RfaE_N N-terminal doma 27.9 2.6E+02 0.0055 20.8 8.5 57 7-72 26-85 (144)
193 PRK07283 hypothetical protein; 27.9 1.3E+02 0.0027 21.1 4.2 80 8-99 13-96 (98)
194 KOG2683 Sirtuin 4 and related 27.8 88 0.0019 26.5 3.7 42 47-91 241-282 (305)
195 COG0703 AroK Shikimate kinase 27.6 3.1E+02 0.0066 21.6 7.0 64 53-133 72-136 (172)
196 cd01412 SIRT5_Af1_CobB SIRT5_A 27.5 2.6E+02 0.0056 22.2 6.4 67 44-131 156-223 (224)
197 PRK11840 bifunctional sulfur c 27.5 2.4E+02 0.0052 24.6 6.5 69 4-90 210-279 (326)
198 PRK10307 putative glycosyl tra 27.4 3.8E+02 0.0083 22.7 8.3 73 43-134 294-370 (412)
199 PRK06895 putative anthranilate 27.2 1.1E+02 0.0023 23.7 4.1 37 51-88 42-78 (190)
200 cd03147 GATase1_Ydr533c_like T 26.8 35 0.00076 27.8 1.3 34 56-89 97-134 (231)
201 COG2242 CobL Precorrin-6B meth 26.8 2.2E+02 0.0047 22.8 5.7 47 56-109 105-153 (187)
202 TIGR00262 trpA tryptophan synt 26.8 3.6E+02 0.0078 22.2 7.5 47 59-109 65-116 (256)
203 TIGR00147 lipid kinase, YegS/R 26.6 3.5E+02 0.0075 22.1 7.3 33 53-90 58-91 (293)
204 PF13407 Peripla_BP_4: Peripla 26.5 1.6E+02 0.0036 22.8 5.1 39 48-91 51-89 (257)
205 COG1597 LCB5 Sphingosine kinas 26.5 1.6E+02 0.0034 24.9 5.3 34 50-88 55-89 (301)
206 COG0061 nadF NAD kinase [Coenz 26.1 1.6E+02 0.0034 24.6 5.1 47 55-106 57-110 (281)
207 KOG1322 GDP-mannose pyrophosph 26.1 1.3E+02 0.0029 26.5 4.7 68 52-134 8-76 (371)
208 PRK02862 glgC glucose-1-phosph 26.0 1.2E+02 0.0025 26.8 4.5 63 55-133 5-70 (429)
209 TIGR00253 RNA_bind_YhbY putati 26.0 2.3E+02 0.005 20.0 5.2 59 75-135 9-68 (95)
210 CHL00200 trpA tryptophan synth 25.9 3.5E+02 0.0075 22.5 7.1 47 40-87 154-207 (263)
211 PF04559 Herpes_UL17: Herpesvi 25.7 31 0.00067 31.8 0.8 11 54-64 523-533 (540)
212 PRK00861 putative lipid kinase 25.6 1.4E+02 0.0031 24.6 4.8 28 56-88 60-87 (300)
213 TIGR00734 hisAF_rel hisA/hisF 24.9 84 0.0018 25.3 3.2 31 44-74 174-204 (221)
214 PF03454 MoeA_C: MoeA C-termin 24.8 36 0.00078 21.8 0.8 17 50-66 45-61 (72)
215 PRK06756 flavodoxin; Provision 24.8 2.8E+02 0.006 20.2 8.7 77 50-126 47-132 (148)
216 PRK13057 putative lipid kinase 24.6 73 0.0016 26.2 2.8 31 53-89 51-81 (287)
217 TIGR00936 ahcY adenosylhomocys 24.5 2.3E+02 0.0049 25.3 6.0 76 3-95 209-285 (406)
218 PHA02448 hypothetical protein 24.5 1.4E+02 0.003 23.0 4.0 57 41-108 133-189 (192)
219 PLN02327 CTP synthase 24.4 55 0.0012 30.5 2.2 39 49-88 359-397 (557)
220 PRK02649 ppnK inorganic polyph 24.4 1.7E+02 0.0037 24.9 5.1 53 51-109 67-126 (305)
221 PRK03515 ornithine carbamoyltr 24.4 2.4E+02 0.0051 24.4 6.0 84 6-89 65-163 (336)
222 PRK11096 ansB L-asparaginase I 24.3 1.1E+02 0.0023 26.7 3.9 49 52-103 100-153 (347)
223 PLN02204 diacylglycerol kinase 24.3 1.3E+02 0.0027 28.5 4.5 22 53-75 219-240 (601)
224 cd06281 PBP1_LacI_like_5 Ligan 24.3 2.3E+02 0.005 22.1 5.6 37 48-90 51-87 (269)
225 cd00458 SugarP_isomerase Sugar 24.0 3.2E+02 0.007 20.7 8.5 44 50-94 17-60 (169)
226 PRK08227 autoinducer 2 aldolas 24.0 2E+02 0.0042 24.2 5.3 116 2-135 130-246 (264)
227 PF11994 DUF3489: Protein of u 23.9 40 0.00088 22.9 0.9 19 59-78 21-39 (72)
228 PLN02929 NADH kinase 23.9 93 0.002 26.7 3.3 34 51-91 63-96 (301)
229 PF03308 ArgK: ArgK protein; 23.7 39 0.00084 28.6 1.0 73 41-113 157-241 (266)
230 TIGR02149 glgA_Coryne glycogen 23.6 3E+02 0.0065 22.7 6.4 40 45-92 273-314 (388)
231 cd06318 PBP1_ABC_sugar_binding 23.6 1.9E+02 0.004 22.7 5.0 38 48-90 51-88 (282)
232 smart00516 SEC14 Domain in hom 23.6 2.5E+02 0.0055 20.0 5.4 65 65-134 79-147 (158)
233 cd03796 GT1_PIG-A_like This fa 23.4 3.4E+02 0.0074 22.9 6.8 70 43-135 260-331 (398)
234 PTZ00339 UDP-N-acetylglucosami 23.2 1.2E+02 0.0026 27.8 4.1 39 55-104 108-150 (482)
235 TIGR02472 sucr_P_syn_N sucrose 23.1 3.3E+02 0.0072 23.6 6.8 66 48-135 332-404 (439)
236 PF01965 DJ-1_PfpI: DJ-1/PfpI 23.0 37 0.00081 25.0 0.7 35 56-90 40-79 (147)
237 PLN02949 transferase, transfer 23.0 2.9E+02 0.0063 24.7 6.5 73 44-135 346-420 (463)
238 cd00331 IGPS Indole-3-glycerol 22.9 3.7E+02 0.008 20.9 6.9 57 6-75 135-193 (217)
239 cd00958 DhnA Class I fructose- 22.7 2E+02 0.0043 22.8 4.9 54 81-134 178-233 (235)
240 cd06308 PBP1_sensor_kinase_lik 22.7 1.6E+02 0.0035 23.1 4.4 36 50-90 54-89 (270)
241 cd06301 PBP1_rhizopine_binding 22.5 1.9E+02 0.0042 22.5 4.8 37 49-90 53-89 (272)
242 PTZ00066 pyruvate kinase; Prov 22.4 1.7E+02 0.0038 27.0 5.0 57 43-108 264-325 (513)
243 PRK09536 btuD corrinoid ABC tr 22.2 1.9E+02 0.0041 25.6 5.1 67 6-72 284-358 (402)
244 cd03809 GT1_mtfB_like This fam 22.1 94 0.002 24.9 3.0 68 44-134 264-333 (365)
245 PF13500 AAA_26: AAA domain; P 21.8 1.3E+02 0.0029 23.0 3.7 10 126-135 172-181 (199)
246 PRK03378 ppnK inorganic polyph 21.8 2.1E+02 0.0046 24.2 5.1 52 52-109 63-121 (292)
247 TIGR00520 asnASE_II L-asparagi 21.7 1.3E+02 0.0028 26.2 3.8 34 53-89 106-139 (349)
248 TIGR00521 coaBC_dfp phosphopan 21.6 1.6E+02 0.0034 26.1 4.4 88 49-136 75-178 (390)
249 PRK00779 ornithine carbamoyltr 21.5 5E+02 0.011 21.9 7.5 98 6-105 63-173 (304)
250 cd03128 GAT_1 Type 1 glutamine 21.1 1.5E+02 0.0032 17.7 3.2 33 56-88 49-85 (92)
251 PRK04128 1-(5-phosphoribosyl)- 21.1 2.5E+02 0.0054 22.7 5.2 49 48-105 67-115 (228)
252 PF01989 DUF126: Protein of un 21.0 62 0.0013 22.4 1.4 35 52-86 27-61 (82)
253 PF02571 CbiJ: Precorrin-6x re 21.0 1.8E+02 0.004 23.9 4.5 17 117-133 233-249 (249)
254 PRK10343 RNA-binding protein Y 20.9 3.1E+02 0.0068 19.5 5.1 58 76-135 12-70 (97)
255 PRK02155 ppnK NAD(+)/NADH kina 20.7 2.2E+02 0.0048 23.9 5.0 52 52-109 63-121 (291)
256 smart00870 Asparaginase Aspara 20.7 1.4E+02 0.003 25.5 3.8 50 52-103 77-131 (323)
257 cd01750 GATase1_CobQ Type 1 gl 20.7 1.1E+02 0.0025 23.8 3.1 21 50-71 35-55 (194)
258 PRK12361 hypothetical protein; 20.6 2.1E+02 0.0046 26.0 5.2 28 56-88 300-327 (547)
259 cd06314 PBP1_tmGBP Periplasmic 20.6 2.2E+02 0.0047 22.3 4.8 37 48-90 51-87 (271)
260 cd06310 PBP1_ABC_sugar_binding 20.5 2.2E+02 0.0049 22.1 4.8 38 48-90 53-90 (273)
261 cd01653 GATase1 Type 1 glutami 20.5 1.6E+02 0.0034 18.6 3.4 34 56-89 49-86 (115)
262 PF14338 Mrr_N: Mrr N-terminal 20.4 2.2E+02 0.0048 19.3 4.2 68 61-129 17-89 (92)
263 PRK01231 ppnK inorganic polyph 20.4 1.8E+02 0.004 24.5 4.5 50 53-108 63-119 (295)
264 PF01535 PPR: PPR repeat; Int 20.3 1E+02 0.0022 15.6 1.9 19 91-109 13-31 (31)
265 KOG0503 Asparaginase [Amino ac 20.2 1.6E+02 0.0035 26.1 4.1 35 52-89 121-155 (368)
266 PF02698 DUF218: DUF218 domain 20.1 3.5E+02 0.0076 19.6 6.4 9 56-64 40-48 (155)
267 cd06311 PBP1_ABC_sugar_binding 20.1 2.4E+02 0.0051 22.1 4.9 35 51-90 59-93 (274)
268 cd06319 PBP1_ABC_sugar_binding 20.1 2.6E+02 0.0056 21.7 5.1 38 48-90 51-88 (277)
No 1
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=7.1e-45 Score=274.11 Aligned_cols=131 Identities=42% Similarity=0.743 Sum_probs=126.2
Q ss_pred ChHHHHHHHhCCCeEEEEeCCCCCC-CcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcC
Q 031219 1 MGLVSQAVYDGGRHVLGVIPKTLMP-REITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG 79 (163)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~-~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg 79 (163)
|||+|+||+++||+|+||+|+.+.+ ++.+++.+++++.+.+|++||.+|++.|||||+||||+|||+|+|++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999998 777888899999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHH
Q 031219 80 IHDK-PVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 131 (163)
Q Consensus 80 ~~~k-Pivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l 131 (163)
.++| |++|+|.+|||+++++|+++|+++||+++++.+.+.+++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 9887 999999999999999999999999999999999999999999999875
No 2
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=3.4e-44 Score=282.79 Aligned_cols=134 Identities=45% Similarity=0.801 Sum_probs=130.3
Q ss_pred ChHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCC
Q 031219 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 80 (163)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~ 80 (163)
|+++|++|+++||+|+||+|..+..++.+++++++++++++|++||.+|++.|||||+||||+|||||++++|+|.|+|.
T Consensus 45 M~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~ 124 (178)
T TIGR00730 45 MGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGI 124 (178)
T ss_pred HHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHHhh
Q 031219 81 HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 81 ~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (163)
|+||++++|.+|||+++++|+++|+++||+++++.+.+.+++|++|++++|+++
T Consensus 125 ~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 125 HQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQNY 178 (178)
T ss_pred CCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999763
No 3
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=237.00 Aligned_cols=137 Identities=38% Similarity=0.642 Sum_probs=130.1
Q ss_pred ChHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCC
Q 031219 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 80 (163)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~ 80 (163)
|+|+++||+++||+||||+|......|.++..+++++++.+|++||.+|+++|||||+||||+||++|+|++|+|.|++.
T Consensus 59 Mea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~ 138 (205)
T COG1611 59 MEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGV 138 (205)
T ss_pred hhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCc
Confidence 99999999999999999999998777755666788999999999999999999999999999999999999999999999
Q ss_pred C--CCcEEEEecCCcchHHHHHHH-HHHHcCCCCccccccEEEeCCHHHHHHHHHhhcCC
Q 031219 81 H--DKPVGLLNVDGYYNSLLSFID-KAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPK 137 (163)
Q Consensus 81 ~--~kPivlln~~Gfw~~l~~~l~-~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~~~ 137 (163)
| .+|.++++.++||+++.++++ +++.++++++.+.+++.+++|++++++.+.++.++
T Consensus 139 ~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 139 HALTPPPLILNGNGFWEPLLEFLDPHLIVEGLISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred ccCCCCcEEecchHHHHHHHHHhCHHHHHhhcCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 9 899999999999999999999 99999999999999999999999999999998765
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=99.97 E-value=3e-31 Score=205.67 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=96.9
Q ss_pred ChHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCC
Q 031219 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 80 (163)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~ 80 (163)
|++++++|+++||+||||+|+.+. ..+...+..+++..+++||++|++.|||||+||||+|||+|++++|+
T Consensus 43 M~a~a~ga~~~gg~viGVlp~~l~---~~~~~~~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------ 113 (159)
T TIGR00725 43 MEAVSKGAREAGGLVVGILPDEDF---AGNPYLTIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------ 113 (159)
T ss_pred HHHHHHHHHHCCCeEEEECChhhc---cCCCCceEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------
Confidence 899999999999999999999874 23444443444555599999999999999999999999999999998
Q ss_pred CCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHH
Q 031219 81 HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 131 (163)
Q Consensus 81 ~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l 131 (163)
++||++++|.+|||+++++++ +.+.+|++ + .+.+++|++|+++++
T Consensus 114 ~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~---~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 114 LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E---RVIVEITPAEAVKLA 158 (159)
T ss_pred cCCCEEEEECCCcchHHHHHH--Hhcccccc-c---eeEecCCHHHHHHhh
Confidence 489999999999999998854 44444443 3 699999999999865
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=98.10 E-value=4.8e-05 Score=61.94 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=78.1
Q ss_pred hHHHHHHHhCCCeEEEEeCCCCCC---Ccc-------cCCC---cceE-----EecCCHHHHHHHHHHhcCEEEEccCC-
Q 031219 2 GLVSQAVYDGGRHVLGVIPKTLMP---REI-------TGDT---VGEV-----KAVSGMHQRKAEMARQADAFIALPGG- 62 (163)
Q Consensus 2 gava~ga~~~GG~viGIiP~~~~~---~e~-------~~~~---~~~l-----i~~~~m~~Rk~~m~~~sDafIalPGG- 62 (163)
.++-++|+++||.+|+|+|..+.. .+. ..+. +++. .....+..|++++...||++|++-.+
T Consensus 87 ~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~ 166 (220)
T TIGR00732 87 GIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPL 166 (220)
T ss_pred HHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCC
Confidence 467889999999999999998732 110 0011 1111 11236789999999999999999987
Q ss_pred -CCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHH
Q 031219 63 -YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 130 (163)
Q Consensus 63 -~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~ 130 (163)
-||+..+-.++.+ +|||..+-. ..+++.-+.-..++.+|. ..+.+++++++.
T Consensus 167 ~sGtl~ta~~A~~~------gr~v~~~pg-~~~~~~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 167 KSGALITARYALEQ------GREVFAYPG-DLNSPESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred CCchHHHHHHHHHh------CCcEEEEcC-CCCCccchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 6999999988865 899999843 345544444556776652 344567776653
No 6
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=96.36 E-value=0.0067 Score=43.74 Aligned_cols=47 Identities=36% Similarity=0.343 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHhcCEEEEccCC----CCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 39 VSGMHQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 39 ~~~m~~Rk~~m~~~sDafIalPGG----~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
.....+|....++.||++|+...| .||.-|+..+..+ +|||+++..+
T Consensus 48 ~~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 48 AREIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 345688889999999998887776 9999999999976 8999999765
No 7
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=96.35 E-value=0.031 Score=45.17 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCC---Ccc---c-----CCCc--ce-----EEecCCHHHHHHHHHHhcCEEEEcc--CC
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMP---REI---T-----GDTV--GE-----VKAVSGMHQRKAEMARQADAFIALP--GG 62 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~---~e~---~-----~~~~--~~-----li~~~~m~~Rk~~m~~~sDafIalP--GG 62 (163)
++-++|+++||++|+|+|..+.. .+. . ++.+ ++ -.....+.+|++++...||+.|+.- =.
T Consensus 88 ~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~ 167 (212)
T PF02481_consen 88 AAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEK 167 (212)
T ss_dssp HHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT
T ss_pred HHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCC
Confidence 56789999999999999998842 211 0 1111 11 1122467899999999999988875 45
Q ss_pred CCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 031219 63 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 108 (163)
Q Consensus 63 ~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~g 108 (163)
-||+.-+-.++.+ +|||..+.. ..+++..+.-..++++|
T Consensus 168 sGt~~ta~~A~~~------gr~v~~vp~-~~~~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 168 SGTLHTARFALEQ------GRPVFAVPG-PIDDPNSEGNNELIKEG 206 (212)
T ss_dssp -THHHHHHHHHHH------T--EEE-----TT-GGGHHHHHHHHTT
T ss_pred ChHHHHHHHHHHc------CCeEEEEeC-CCCCcccHHHHHHHHcC
Confidence 6888777777765 799999743 36666666666777776
No 8
>PRK10736 hypothetical protein; Provisional
Probab=93.70 E-value=1.3 Score=39.01 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=73.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCC---Cc-------c-cCCCc--ceE-----EecCCHHHHHHHHHHhcCEEEEccC--CC
Q 031219 4 VSQAVYDGGRHVLGVIPKTLMP---RE-------I-TGDTV--GEV-----KAVSGMHQRKAEMARQADAFIALPG--GY 63 (163)
Q Consensus 4 va~ga~~~GG~viGIiP~~~~~---~e-------~-~~~~~--~~l-----i~~~~m~~Rk~~m~~~sDafIalPG--G~ 63 (163)
+=++|+++||++|+|++..+.. .+ . ..+.+ +|. ....+|..|++++.-.|+++||.=- --
T Consensus 152 AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kS 231 (374)
T PRK10736 152 AHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRS 231 (374)
T ss_pred HHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCC
Confidence 3467899999999999988742 11 0 00001 111 1124789999999999999887643 44
Q ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHH
Q 031219 64 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 132 (163)
Q Consensus 64 GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 132 (163)
|||.=.-.++.. +|+|..+-. ...++.-+--.+++.+| -..+.+++++++.+.
T Consensus 232 GsliTA~~Al~~------gR~VfavPG-~i~~~~s~G~n~LI~~G---------A~lv~~~~Di~~~l~ 284 (374)
T PRK10736 232 GSLVTARCALEQ------GRDVFALPG-PIGNPGSEGPHWLIKQG---------AYLVTSPEDILENLQ 284 (374)
T ss_pred chHHHHHHHHHh------CCeEEEEcC-CCCCccchhHHHHHHCC---------CEEeCCHHHHHHHhh
Confidence 677666666644 899998842 24454444455566554 345667888888774
No 9
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=93.38 E-value=0.6 Score=38.44 Aligned_cols=71 Identities=28% Similarity=0.304 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeC-
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ- 122 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~- 122 (163)
..-.-++..||++|-- ||++|+.|+. . .+||++++-..+++++... .+.+.+.|. ....+
T Consensus 242 ~~~~~~m~~ad~vIs~-~G~~t~~Ea~---~------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~--------~~~~~~ 302 (318)
T PF13528_consen 242 PDFAELMAAADLVISK-GGYTTISEAL---A------LGKPALVIPRPGQDEQEYN-ARKLEELGL--------GIVLSQ 302 (318)
T ss_pred HHHHHHHHhCCEEEEC-CCHHHHHHHH---H------cCCCEEEEeCCCCchHHHH-HHHHHHCCC--------eEEccc
Confidence 3344557889888776 8899987775 3 3899999987777776654 344555443 23322
Q ss_pred ---CHHHHHHHHHh
Q 031219 123 ---TAHELICKLEE 133 (163)
Q Consensus 123 ---~~ee~~~~l~~ 133 (163)
+++.+.++|++
T Consensus 303 ~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 303 EDLTPERLAEFLER 316 (318)
T ss_pred ccCCHHHHHHHHhc
Confidence 67888888865
No 10
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.91 E-value=3.5 Score=31.39 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=66.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCc----------ccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCC-CCCHHHHHH
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPRE----------ITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGG-YGTLEELLE 71 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e----------~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG-~GTLdEl~e 71 (163)
.+.+||.+.|=.|.-.-|-...+.. .+++.+.+..-..=-.-|.+.+++.||.+|+.-|- +---+-.|+
T Consensus 13 ~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQWNaAfD 92 (141)
T PF11071_consen 13 EIKEGAKAAGLPVEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQWNAAFD 92 (141)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHHHHHHhh
Confidence 4567788888777777665443221 11222222222222267888999999999998763 222222232
Q ss_pred HHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHH
Q 031219 72 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 132 (163)
Q Consensus 72 ~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 132 (163)
+-... ...||+|++.....=-+|.+ -+.....++.+|+++++.|+
T Consensus 93 Ag~a~---AlgKplI~lh~~~~~HpLKE-------------vda~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 93 AGYAA---ALGKPLITLHPEELHHPLKE-------------VDAAALAVAETPEQVVEILR 137 (141)
T ss_pred HHHHH---HcCCCeEEecchhccccHHH-------------HhHhhHhhhCCHHHHHHHHH
Confidence 22211 13899999976543333332 13346778999999999874
No 11
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=87.99 E-value=0.48 Score=35.74 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=30.0
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcch-HHHHHHHHHHHcCC
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN-SLLSFIDKAVDEGF 109 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~-~l~~~l~~~~~~gf 109 (163)
-..+++.|| +||--||.||+.|+.. ..+|.|++-..+-.+ +-..--..+.+.|.
T Consensus 66 m~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~ 120 (167)
T PF04101_consen 66 MAELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKGA 120 (167)
T ss_dssp HHHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCCC
T ss_pred HHHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcCC
Confidence 356788999 7777889999887762 489999875433221 22222334555553
No 12
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=87.44 E-value=8 Score=29.53 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=65.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCc----------ccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCC-CCCHHHHHH
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPRE----------ITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGG-YGTLEELLE 71 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e----------~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG-~GTLdEl~e 71 (163)
.+.+||.+.|=.|.-.-|-...+.. .+++...+-.-..=-..|-+.+++.||.+|+.-|- +---+-.|+
T Consensus 16 ~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYKQWNaAfD 95 (144)
T TIGR03646 16 EIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYKQWNAAFD 95 (144)
T ss_pred HHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHHHHHHHhh
Confidence 4667888888777777665432211 11111212221122267888999999999988763 222222333
Q ss_pred HHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHH
Q 031219 72 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 132 (163)
Q Consensus 72 ~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 132 (163)
+-... ...||+|++.....=-+|.+ -+.....++.+|+++++.|+
T Consensus 96 Ag~aa---AlgKplI~lh~~~~~HpLKE-------------vdaaA~avaetp~Qvv~iL~ 140 (144)
T TIGR03646 96 AGYAA---ALGKPLIILRPEELIHPLKE-------------VDNKAQAVVETPEQAIETLK 140 (144)
T ss_pred HHHHH---HcCCCeEEecchhccccHHH-------------HhHHHHHHhcCHHHHHHHHH
Confidence 22211 13799999976533333332 13345678999999999874
No 13
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=85.74 E-value=7.9 Score=29.80 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCc-ccCCCcc-eEEecCCHHHHHHHHHHhcCEEEEcc-CCC--CCHHHHHHHHHHHH
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPRE-ITGDTVG-EVKAVSGMHQRKAEMARQADAFIALP-GGY--GTLEELLEVITWAQ 77 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e-~~~~~~~-~li~~~~m~~Rk~~m~~~sDafIalP-GG~--GTLdEl~e~~~~~q 77 (163)
|+-+.|+++|=..=|-.|....... .-...|. ......+...|.+..++-||+-++|- |-. || ++...++
T Consensus 12 AALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt--~lT~~~a--- 86 (145)
T PF12694_consen 12 AALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT--ALTVEFA--- 86 (145)
T ss_dssp HHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH--HHHHHHH---
T ss_pred HHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH--HHHHHHH---
Confidence 5567888888888888998875433 2233443 22345788999999999999955554 332 33 3333333
Q ss_pred cCCCCCcEEEEec
Q 031219 78 LGIHDKPVGLLNV 90 (163)
Q Consensus 78 lg~~~kPivlln~ 90 (163)
..|.||+.+++.
T Consensus 87 -~~~~KP~l~i~~ 98 (145)
T PF12694_consen 87 -RKHGKPCLHIDL 98 (145)
T ss_dssp -HHTT--EEEETS
T ss_pred -HHhCCCEEEEec
Confidence 367999999854
No 14
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=84.42 E-value=9.5 Score=30.17 Aligned_cols=43 Identities=30% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCEEEEccCC------CCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 43 HQRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG------~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
.+=...++++||++|+.-=+ .||.-|+-.++.+ .||++.+..+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d 107 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKD 107 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeec
Confidence 44445678999998887666 5899999999987 9999999764
No 15
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=84.24 E-value=5.5 Score=34.36 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
++-..++..||++|.-|||. | ++|+++. ++|+++.+..+- ++..+ ...+.+.| .-...+|
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-t---l~EA~a~------G~PvI~~~~~pg-qe~~N-~~~~~~~G--------~g~~~~~ 324 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-T---ISEGLAR------CIPMIFLNPAPG-QELEN-ALYFEEKG--------FGKIADT 324 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-H---HHHHHHh------CCCEEECCCCCC-cchhH-HHHHHhCC--------cEEEeCC
Confidence 44556789999999878775 6 4455544 899999864221 11111 11223333 2234668
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.+.+..
T Consensus 325 ~~~l~~~i~~ll 336 (391)
T PRK13608 325 PEEAIKIVASLT 336 (391)
T ss_pred HHHHHHHHHHHh
Confidence 888877776653
No 16
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=83.87 E-value=8.3 Score=32.91 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE-eCCHHH
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS-AQTAHE 126 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~-~~~~ee 126 (163)
.++..||++| ..||.||+.|.+ .+.+|++++-.. ..+. ...+.+.+.|.- ..+.. .-++++
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal---------~~G~P~v~~p~~-~dq~--~~a~~l~~~g~g-----~~l~~~~~~~~~ 348 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEAL---------FNGVPMVAVPQG-ADQP--MTARRIAELGLG-----RHLPPEEVTAEK 348 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHH---------HhCCCEEecCCc-ccHH--HHHHHHHHCCCE-----EEeccccCCHHH
Confidence 4567888655 688999987755 248999998532 2222 233455554421 11111 124677
Q ss_pred HHHHHHhhc
Q 031219 127 LICKLEEYV 135 (163)
Q Consensus 127 ~~~~l~~~~ 135 (163)
+.+.+.+..
T Consensus 349 l~~ai~~~l 357 (392)
T TIGR01426 349 LREAVLAVL 357 (392)
T ss_pred HHHHHHHHh
Confidence 777776553
No 17
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=83.40 E-value=5.1 Score=34.30 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
+....++..||++|.-+| .+|+.| +++ ..+|+|+.+.-. .+..-+ .+.+.+.|. -..+.|
T Consensus 274 ~~~~~l~~aaDv~V~~~g-~~ti~E---Ama------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~ 333 (382)
T PLN02605 274 TNMEEWMGACDCIITKAG-PGTIAE---ALI------RGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSES 333 (382)
T ss_pred ccHHHHHHhCCEEEECCC-cchHHH---HHH------cCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCC
Confidence 345567889999997665 468554 454 389999987311 111111 123333332 223589
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.+.+..
T Consensus 334 ~~~la~~i~~ll 345 (382)
T PLN02605 334 PKEIARIVAEWF 345 (382)
T ss_pred HHHHHHHHHHHH
Confidence 999888887764
No 18
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=81.91 E-value=22 Score=30.16 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHH
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 127 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 127 (163)
.++..+|+|| --||.||+.|.. .+.+|++++-. +.|.. .+.+.+.+.|.-..-... .-+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~----~~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPR----ELTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCcc----cCCHHHH
Confidence 4567788887 677789987766 34899999853 33422 234556666632111111 1267777
Q ss_pred HHHHHhhc
Q 031219 128 ICKLEEYV 135 (163)
Q Consensus 128 ~~~l~~~~ 135 (163)
.+.+++..
T Consensus 363 ~~al~~~l 370 (401)
T cd03784 363 AAALRRLL 370 (401)
T ss_pred HHHHHHHh
Confidence 77666543
No 19
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=80.26 E-value=12 Score=31.68 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
++...++..||++|.-+||. | ++|++.. .+|+|+++..+.... +-.+.+.+.|+ .....|
T Consensus 265 ~~~~~l~~~aD~~v~~~gg~-t---~~EA~a~------g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~~~~ 324 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGGI-T---LSEAAAL------GVPVILYKPVPGQEK--ENAMYFERKGA--------AVVIRD 324 (380)
T ss_pred hhHHHHHHhccEEEeCCCch-H---HHHHHHh------CCCEEECCCCCCcch--HHHHHHHhCCc--------EEEECC
Confidence 34456788999988766653 5 4455544 899998763222211 11122333343 345678
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.|.+..
T Consensus 325 ~~~l~~~i~~ll 336 (380)
T PRK13609 325 DEEVFAKTEALL 336 (380)
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 20
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=79.87 E-value=11 Score=33.01 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCC---cc-------cCC------CcceE-EecCCHHHHHHHHHHhcCEEEEccCCC--
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPR---EI-------TGD------TVGEV-KAVSGMHQRKAEMARQADAFIALPGGY-- 63 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~---e~-------~~~------~~~~l-i~~~~m~~Rk~~m~~~sDafIalPGG~-- 63 (163)
++-++++++||++|+|+...+... +. ..+ +..+. ....+|..|+++..-.|++++|.=.+.
T Consensus 155 ~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kS 234 (350)
T COG0758 155 EAHKAALNAGGKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKS 234 (350)
T ss_pred HHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCccc
Confidence 456789999999999998887421 10 011 11111 223489999999999999999987664
Q ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 64 GTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 64 GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
|+|.=.-.++.. .+.|..+-.
T Consensus 235 GSLiTA~~Aleq------gR~VfavPg 255 (350)
T COG0758 235 GSLITAKYALEQ------GRDVFAVPG 255 (350)
T ss_pred ccHHHHHHHHHc------CCeeEEcCC
Confidence 776666655543 677776643
No 21
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=78.80 E-value=7.9 Score=33.06 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=53.8
Q ss_pred HHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccc--c-----EE
Q 031219 47 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY--I-----IV 119 (163)
Q Consensus 47 ~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~--~-----i~ 119 (163)
.-++..||+|||-+-+.-=+.|. ++ ..|||.++...+--+.+..+++.|.++|.+.+-... . ..
T Consensus 223 ~~~La~ad~i~VT~DSvSMvsEA---~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~ 293 (311)
T PF06258_consen 223 LGFLAAADAIVVTEDSVSMVSEA---AA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYE 293 (311)
T ss_pred HHHHHhCCEEEEcCccHHHHHHH---HH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCC
Confidence 35788999999977766554443 33 379999998877555677788899999988665433 1 33
Q ss_pred EeCCHHHHHHHHHh
Q 031219 120 SAQTAHELICKLEE 133 (163)
Q Consensus 120 ~~~~~ee~~~~l~~ 133 (163)
-.++.+.+.+.|.+
T Consensus 294 pl~et~r~A~~i~~ 307 (311)
T PF06258_consen 294 PLDETDRVAAEIRE 307 (311)
T ss_pred CccHHHHHHHHHHH
Confidence 44555666666654
No 22
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=78.63 E-value=14 Score=30.49 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=39.7
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeC--C
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ--T 123 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~--~ 123 (163)
-.-++..||++|. ++|..|+- |++. ..+|+|..+..+.=.+.....+.+.+.+ ...+.-.. +
T Consensus 244 ~~~~l~~ad~~v~-~~g~~~l~---Ea~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~~------~G~~~~~~~~~ 307 (348)
T TIGR01133 244 MAAAYAAADLVIS-RAGASTVA---ELAA------AGVPAILIPYPYAADDQYYNAKFLEDLG------AGLVIRQKELL 307 (348)
T ss_pred HHHHHHhCCEEEE-CCChhHHH---HHHH------cCCCEEEeeCCCCccchhhHHHHHHHCC------CEEEEecccCC
Confidence 3467889999886 55544544 4444 3899999865432111110011222211 12222233 4
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.|.+..
T Consensus 308 ~~~l~~~i~~ll 319 (348)
T TIGR01133 308 PEKLLEALLKLL 319 (348)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 23
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=77.10 E-value=19 Score=30.04 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCC--cchHHHHHHHHHHHcCCCCccccc
Q 031219 39 VSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG--YYNSLLSFIDKAVDEGFIAPAARY 116 (163)
Q Consensus 39 ~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~G--fw~~l~~~l~~~~~~gfi~~~~~~ 116 (163)
+.++.+.-..++..||++|. ++|.+|+ +|++.. .+|++.....+ ..+... ..+.+.+.| ..
T Consensus 239 ~~g~~~~~~~~~~~~d~~i~-~~g~~~~---~Ea~~~------g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g 301 (357)
T PRK00726 239 VVPFIDDMAAAYAAADLVIC-RAGASTV---AELAAA------GLPAILVPLPHAADDHQTA-NARALVDAG------AA 301 (357)
T ss_pred EeehHhhHHHHHHhCCEEEE-CCCHHHH---HHHHHh------CCCEEEecCCCCCcCcHHH-HHHHHHHCC------CE
Confidence 34444555678889999986 5555664 455544 89999886421 111111 112333333 12
Q ss_pred cEEEeCC--HHHHHHHHHhhcC
Q 031219 117 IIVSAQT--AHELICKLEEYVP 136 (163)
Q Consensus 117 ~i~~~~~--~ee~~~~l~~~~~ 136 (163)
.+.-.+| ++++.+.|++...
T Consensus 302 ~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 302 LLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEEEcccCCHHHHHHHHHHHHc
Confidence 2333344 8888888877543
No 24
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=76.60 E-value=25 Score=28.93 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCc-chHHHHHHHHHHHcCCCCccccccEEEeC
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVSAQ 122 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gf-w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 122 (163)
+....++..||++|. ++|.+| +.|+++. .+|++.....+. .+.-....+.+.+.| ...+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t---~~Eam~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGAST---VAELAAL------GLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhH---HHHHHHh------CCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecC
Confidence 455567889999885 555456 5555654 899998754321 111000012233322 11222222
Q ss_pred --CHHHHHHHHHhhc
Q 031219 123 --TAHELICKLEEYV 135 (163)
Q Consensus 123 --~~ee~~~~l~~~~ 135 (163)
|++++.+.|.+..
T Consensus 308 ~~~~~~l~~~i~~ll 322 (350)
T cd03785 308 ELTPERLAAALLELL 322 (350)
T ss_pred CCCHHHHHHHHHHHh
Confidence 7888888887764
No 25
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=74.63 E-value=17 Score=27.43 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHHHH--hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHH--------------HHHHHHH
Q 031219 42 MHQRKAEMAR--QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL--------------SFIDKAV 105 (163)
Q Consensus 42 m~~Rk~~m~~--~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~--------------~~l~~~~ 105 (163)
+.+=.+.+.+ ...++++.--|++--.++++++.- .... ||||++... -.+.=. +.++.+.
T Consensus 42 ~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~--a~~~-KPVv~lk~G-rt~~g~~aa~sHTgslag~~~~~~a~~ 117 (138)
T PF13607_consen 42 FADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARR--AARR-KPVVVLKAG-RTEAGARAAASHTGSLAGDDAVYDAAL 117 (138)
T ss_dssp HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHH--HCCC-S-EEEEE----------------------HHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHH--HhcC-CCEEEEeCC-CchhhhhhhhccCCcccCcHHHHHHHH
Confidence 3333334443 356889999999999999988743 3333 999999763 221100 0011111
Q ss_pred HcCCCCccccccEEEeCCHHHHHHHH
Q 031219 106 DEGFIAPAARYIIVSAQTAHELICKL 131 (163)
Q Consensus 106 ~~gfi~~~~~~~i~~~~~~ee~~~~l 131 (163)
...-+..++|++|+++..
T Consensus 118 --------~~aGv~~v~~~~el~~~~ 135 (138)
T PF13607_consen 118 --------RQAGVVRVDDLDELLDAA 135 (138)
T ss_dssp --------HHCTEEEESSHHHHHHHH
T ss_pred --------HHcCceEECCHHHHHHHH
Confidence 234689999999998865
No 26
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=74.25 E-value=11 Score=31.57 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCC
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 109 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gf 109 (163)
+.-..++..||++|.- ||.+|+.|. +. +.+|++++...+.++...+ .+.+.+.|.
T Consensus 239 ~~~~~~l~~ad~vI~~-~G~~t~~Ea---~~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 239 DNFKELIKNAELVITH-GGFSLISEA---LS------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHHHHHHhCCEEEEC-CChHHHHHH---HH------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 4556678889988775 677886664 43 4899999987666665443 344555553
No 27
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=73.87 E-value=19 Score=30.03 Aligned_cols=46 Identities=33% Similarity=0.630 Sum_probs=31.4
Q ss_pred EccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcC
Q 031219 58 ALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEG 108 (163)
Q Consensus 58 alPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~-----~l~~~~~~g 108 (163)
+|-.|+ |++.+++.+.-.. ..++.|++++ +||+++++ |++.+.+.|
T Consensus 69 AL~~g~-~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 69 ALKQGI-NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred HHHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 445555 5778887776544 3467899877 58888665 677777766
No 28
>PRK10565 putative carbohydrate kinase; Provisional
Probab=72.59 E-value=13 Score=33.83 Aligned_cols=110 Identities=17% Similarity=0.063 Sum_probs=58.0
Q ss_pred HHHHHHhCCC-eEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCC
Q 031219 4 VSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHD 82 (163)
Q Consensus 4 va~ga~~~GG-~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~ 82 (163)
++++|+..|. .|.=+.|+... ........++++.+-..+.-..++..+|++++=|| .|+-++...++.. +...+
T Consensus 273 aa~aAlr~GaGlv~~~~~~~~~--~~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG-lg~~~~~~~~~~~--~~~~~ 347 (508)
T PRK10565 273 AGEAALRSGAGLVRVLTRSENI--APLLTARPELMVHELTPDSLEESLEWADVVVIGPG-LGQQEWGKKALQK--VENFR 347 (508)
T ss_pred HHHHHHHhCCCeEEEEeChhhH--HHHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-CCCCHHHHHHHHH--HHhcC
Confidence 5678887765 44444565421 12234455666543212223334578899888886 7776655544422 23457
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHH
Q 031219 83 KPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 131 (163)
Q Consensus 83 kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l 131 (163)
+|+| ++-++ +.++.. ... ......++.++-|+.+.+
T Consensus 348 ~P~V-LDAda-----L~ll~~---~~~----~~~~~VLTPh~gE~~rL~ 383 (508)
T PRK10565 348 KPML-WDADA-----LNLLAI---NPD----KRHNRVITPHPGEAARLL 383 (508)
T ss_pred CCEE-EEchH-----HHHHhh---Ccc----ccCCeEECCCHHHHHHHh
Confidence 8976 45555 222221 100 011346677777766655
No 29
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=71.14 E-value=11 Score=33.28 Aligned_cols=79 Identities=25% Similarity=0.219 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCC
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHD 82 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~ 82 (163)
.+.+++.+.+.++|==... .+ . ....+.+-+.+.++..- ..++..||+|| -.||.||+.|.. .+.
T Consensus 256 ~~~~a~~~l~~~vi~~~~~--~~-~-~~~~~p~n~~v~~~~p~-~~~l~~ad~vI-~hGG~gtt~eaL---------~~g 320 (406)
T COG1819 256 IVLEALADLDVRVIVSLGG--AR-D-TLVNVPDNVIVADYVPQ-LELLPRADAVI-HHGGAGTTSEAL---------YAG 320 (406)
T ss_pred HHHHHHhcCCcEEEEeccc--cc-c-ccccCCCceEEecCCCH-HHHhhhcCEEE-ecCCcchHHHHH---------HcC
Confidence 4556677777777754333 11 1 12233333333333111 13788898875 699999988765 358
Q ss_pred CcEEEEecCCcchHHH
Q 031219 83 KPVGLLNVDGYYNSLL 98 (163)
Q Consensus 83 kPivlln~~Gfw~~l~ 98 (163)
+|++++-. .||...
T Consensus 321 vP~vv~P~--~~DQ~~ 334 (406)
T COG1819 321 VPLVVIPD--GADQPL 334 (406)
T ss_pred CCEEEecC--CcchhH
Confidence 99999863 366543
No 30
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=70.69 E-value=20 Score=29.72 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeC
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 122 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 122 (163)
.+....++..||+||.=+| |..+|. +. ..+|++.++..+-+.. .++.| -.+.+.+
T Consensus 268 ~~~~~~l~~~ad~~v~~Sg--gi~~Ea---~~------~g~PvI~~~~~~~~~~-------~~~~g-------~~~~~~~ 322 (363)
T cd03786 268 YLYFLLLLKNADLVLTDSG--GIQEEA---SF------LGVPVLNLRDRTERPE-------TVESG-------TNVLVGT 322 (363)
T ss_pred HHHHHHHHHcCcEEEEcCc--cHHhhh---hh------cCCCEEeeCCCCccch-------hhhee-------eEEecCC
Confidence 4455667888999985555 443333 32 3799999864332221 22222 1233334
Q ss_pred CHHHHHHHHHhhcC
Q 031219 123 TAHELICKLEEYVP 136 (163)
Q Consensus 123 ~~ee~~~~l~~~~~ 136 (163)
+++++.+.+.+...
T Consensus 323 ~~~~i~~~i~~ll~ 336 (363)
T cd03786 323 DPEAILAAIEKLLS 336 (363)
T ss_pred CHHHHHHHHHHHhc
Confidence 68888888887644
No 31
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=70.33 E-value=7.1 Score=32.33 Aligned_cols=39 Identities=23% Similarity=0.119 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 41 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
........++..||.+|. +|| +|+-|+. +. ++|++++-.
T Consensus 230 ~~~~~m~~lm~~aDl~Is-~~G-~T~~E~~---a~------g~P~i~i~~ 268 (279)
T TIGR03590 230 IDVENMAELMNEADLAIG-AAG-STSWERC---CL------GLPSLAICL 268 (279)
T ss_pred eCHHHHHHHHHHCCEEEE-CCc-hHHHHHH---Hc------CCCEEEEEe
Confidence 334455677899999999 666 8866655 33 899999864
No 32
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.28 E-value=29 Score=28.06 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCEEEEcc----CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccE
Q 031219 43 HQRKAEMARQADAFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 118 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalP----GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i 118 (163)
.+....+...||++|... .|+|. =+.|+++. .+|++..+..+..+.+.. + .....+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~~------g~Pvi~~~~~~~~~~i~~-------~-----~~~g~~ 313 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGI--VLLEAMAF------GKPVISTEIGTGGSYVNL-------H-----GVTGLV 313 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccch--HHHHHHHc------CCCEEecCCCCchhHHhh-------C-----CCceEE
Confidence 455667888899988652 56665 36677754 899998776543332221 0 122334
Q ss_pred EEeCCHHHHHHHHHhhc
Q 031219 119 VSAQTAHELICKLEEYV 135 (163)
Q Consensus 119 ~~~~~~ee~~~~l~~~~ 135 (163)
.-.+|++++.+.|.+..
T Consensus 314 ~~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 314 VPPGDPAALAEAIRRLL 330 (357)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 44578988888887754
No 33
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=69.05 E-value=40 Score=29.03 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHHhcCEEEEcc---CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 45 RKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 45 Rk~~m~~~sDafIalP---GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
....+...||++++.| .|.|.- +.|++.. .+|||.-...+-+.++.+ .+.+.| .+...
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~~---~~~~~g--------~~~~~ 372 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIFE---RLLQAG--------AAIQV 372 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHHH---HHHHCC--------CeEEE
Confidence 3446678899877642 233442 6788865 899997432122333333 333333 44557
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
+|++++.+.|....
T Consensus 373 ~d~~~La~~l~~ll 386 (425)
T PRK05749 373 EDAEDLAKAVTYLL 386 (425)
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888887654
No 34
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=68.85 E-value=6.4 Score=28.66 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=23.0
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
+|+.-||=||+.|+...+.-........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 7888999999999987773221111126788773
No 35
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.68 E-value=9.8 Score=32.34 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=35.6
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC---CcchHH------HHHHHHHHHcCC
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD---GYYNSL------LSFIDKAVDEGF 109 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~---Gfw~~l------~~~l~~~~~~gf 109 (163)
+..|.+|++ ||=||+-+.+..+. ..++|++.+|.. ||..+. .+.++.+.+..|
T Consensus 56 ~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~~g~~ 117 (305)
T PRK02645 56 ELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDRY 117 (305)
T ss_pred cCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHHcCCc
Confidence 346766666 99999998886653 348999999962 576653 345566555443
No 36
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=66.53 E-value=44 Score=26.17 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 43 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
.+....++..||++|.-.. |+|+ =++|+++. .+|++..+..+....+. +. .....+.-
T Consensus 243 ~~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~~~~~~~-------~~-----~~~g~~~~ 302 (348)
T cd03820 243 TKNIEEYYAKASIFVLTSRFEGFPM--VLLEAMAF------GLPVISFDCPTGPSEII-------ED-----GVNGLLVP 302 (348)
T ss_pred cchHHHHHHhCCEEEeCccccccCH--HHHHHHHc------CCCEEEecCCCchHhhh-------cc-----CcceEEeC
Confidence 5667778888998775432 4444 37777754 89999876543333222 11 11223333
Q ss_pred eCCHHHHHHHHHhhc
Q 031219 121 AQTAHELICKLEEYV 135 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (163)
..|++++.+.|.+..
T Consensus 303 ~~~~~~~~~~i~~ll 317 (348)
T cd03820 303 NGDVEALAEALLRLM 317 (348)
T ss_pred CCCHHHHHHHHHHHH
Confidence 456788888887763
No 37
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=65.78 E-value=44 Score=29.00 Aligned_cols=71 Identities=20% Similarity=0.159 Sum_probs=43.5
Q ss_pred cCEE-EEccCCCCCHHHHHHHHHHHHcC-CCCCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHH
Q 031219 53 ADAF-IALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 129 (163)
Q Consensus 53 sDaf-IalPGG~GTLdEl~e~~~~~qlg-~~~kPivlln~~G-fw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~ 129 (163)
.|++ |.++||+...+++.+.+.-..-. .++||+++. ..| ..+... +.+.+.|+ .+.+.++++++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~---~~L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGK---KILAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHH---HHHHHCCC-------CceecCCHHHHHH
Confidence 4654 45678888888888777643322 268999554 444 222222 22332221 3778999999999
Q ss_pred HHHhh
Q 031219 130 KLEEY 134 (163)
Q Consensus 130 ~l~~~ 134 (163)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 98764
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=65.09 E-value=20 Score=30.18 Aligned_cols=33 Identities=36% Similarity=0.310 Sum_probs=23.0
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
...+...||++|. ++|..|+ |. +.+ .+|+|+.-
T Consensus 255 ~~~~~~~aDl~v~-~sG~~~l-Ea---~a~------G~PvI~~~ 287 (380)
T PRK00025 255 KREAMAAADAALA-ASGTVTL-EL---ALL------KVPMVVGY 287 (380)
T ss_pred HHHHHHhCCEEEE-CccHHHH-HH---HHh------CCCEEEEE
Confidence 3456788888877 6777776 55 332 89998753
No 39
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=64.90 E-value=31 Score=28.75 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=42.9
Q ss_pred HHHHHHhcCEEEEc--cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 46 KAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 46 k~~m~~~sDafIal--PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
...++..||++|.. ..|+|. =++|++.. .+||+.-+..| ..+++ .+| ....+.-.+|
T Consensus 266 ~~~~~~~adi~v~pS~~Eg~~~--~~lEAma~------G~Pvv~s~~~g-~~e~i-------~~~-----~~g~~~~~~d 324 (374)
T TIGR03088 266 VPALMQALDLFVLPSLAEGISN--TILEAMAS------GLPVIATAVGG-NPELV-------QHG-----VTGALVPPGD 324 (374)
T ss_pred HHHHHHhcCEEEeccccccCch--HHHHHHHc------CCCEEEcCCCC-cHHHh-------cCC-----CceEEeCCCC
Confidence 34567788987742 356665 37777754 89999987643 33322 221 2234444578
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.|....
T Consensus 325 ~~~la~~i~~l~ 336 (374)
T TIGR03088 325 AVALARALQPYV 336 (374)
T ss_pred HHHHHHHHHHHH
Confidence 998888887653
No 40
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=64.67 E-value=38 Score=27.93 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCEEEEcc-CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 43 HQRKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalP-GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
.+....++..||++|... .|+|.. ++|++.. .+||+..+..| +..++ .......+.-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama~------G~Pvi~~~~~~-~~e~i------------~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMAS------GTPVIAYGKGG-ALETV------------IDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHHc------CCCEEEeCCCC-Cccee------------eCCCCEEEeCC
Confidence 444667889999988532 677775 4677754 89999987643 33221 11123344446
Q ss_pred CCHHHHHHHHHhhcC
Q 031219 122 QTAHELICKLEEYVP 136 (163)
Q Consensus 122 ~~~ee~~~~l~~~~~ 136 (163)
+|++++.+.|.....
T Consensus 311 ~~~~~la~~i~~l~~ 325 (351)
T cd03804 311 QTVESLAAAVERFEK 325 (351)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789988888877643
No 41
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=63.52 E-value=53 Score=28.14 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=39.7
Q ss_pred HHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCc---chHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 47 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY---YNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 47 ~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gf---w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
..++..||++|.- ||.+|+.|+. .+.+|++++-.... -+...+ .+.+.+.|....-. .-.-+
T Consensus 247 ~~~~~~adlvIsr-~G~~t~~E~~---------~~g~P~I~iP~~~~~~~~~Q~~N-a~~l~~~g~~~~l~----~~~~~ 311 (352)
T PRK12446 247 PDILAITDFVISR-AGSNAIFEFL---------TLQKPMLLIPLSKFASRGDQILN-AESFERQGYASVLY----EEDVT 311 (352)
T ss_pred HHHHHhCCEEEEC-CChhHHHHHH---------HcCCCEEEEcCCCCCCCchHHHH-HHHHHHCCCEEEcc----hhcCC
Confidence 3478999966555 5567777776 24899999832111 122222 45566655321110 11115
Q ss_pred HHHHHHHHHhh
Q 031219 124 AHELICKLEEY 134 (163)
Q Consensus 124 ~ee~~~~l~~~ 134 (163)
++++.+.+.+.
T Consensus 312 ~~~l~~~l~~l 322 (352)
T PRK12446 312 VNSLIKHVEEL 322 (352)
T ss_pred HHHHHHHHHHH
Confidence 67777777665
No 42
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=63.14 E-value=22 Score=28.16 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=53.9
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHH-------HHcCCCCCcEEEEecCCcchH--HHHHHHHHHHcCCC-CccccccEEEe
Q 031219 52 QADAFIALPGGYGTLEELLEVITW-------AQLGIHDKPVGLLNVDGYYNS--LLSFIDKAVDEGFI-APAARYIIVSA 121 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~-------~qlg~~~kPivlln~~Gfw~~--l~~~l~~~~~~gfi-~~~~~~~i~~~ 121 (163)
.+|++|+.|=..+|+.-+..-++= ...-..++|++++-.+ .|.. .++-++.+.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~-M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRE-TPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEecc-ccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 589999999999999887643320 1111358999998764 6653 23346677777753 22233445556
Q ss_pred CCHHHHHHHHHh
Q 031219 122 QTAHELICKLEE 133 (163)
Q Consensus 122 ~~~ee~~~~l~~ 133 (163)
.+++++++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 889999998854
No 43
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=62.94 E-value=68 Score=27.91 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=50.2
Q ss_pred EecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcc---hHHHHHHHHHHHcCCCCcc
Q 031219 37 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY---NSLLSFIDKAVDEGFIAPA 113 (163)
Q Consensus 37 i~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw---~~l~~~l~~~~~~gfi~~~ 113 (163)
+.+..+.+.....++.||.+|.=+| ..|+.|+.. ..+|.|++-. .++ +...+ .+.+.+.|.-
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a---------~g~P~IliP~-p~~~~~~Q~~N-A~~l~~~gaa--- 301 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRAG-ALTIAELLA---------LGVPAILVPY-PPGADGHQEYN-AKFLEKAGAA--- 301 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCCc-ccHHHHHHH---------hCCCEEEeCC-CCCccchHHHH-HHHHHhCCCE---
Confidence 5556666777778888998776655 579999872 2799999864 355 22222 3345555421
Q ss_pred ccccEEEeC-CHHHHHHHHHhhcC
Q 031219 114 ARYIIVSAQ-TAHELICKLEEYVP 136 (163)
Q Consensus 114 ~~~~i~~~~-~~ee~~~~l~~~~~ 136 (163)
-.+.-.+ +++++.+.|.+...
T Consensus 302 --~~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 302 --LVIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred --EEeccccCCHHHHHHHHHHHhc
Confidence 1111111 36688777776543
No 44
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=62.72 E-value=16 Score=30.57 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHH-----hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHc
Q 031219 39 VSGMHQRKAEMAR-----QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDE 107 (163)
Q Consensus 39 ~~~m~~Rk~~m~~-----~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~ 107 (163)
..+=.+|-+-|.+ ..||+++.-||.|+. ++..-+.|..+..++|+++ -|+++-.+.-.+...
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i------GySDiTaL~~~l~~~ 110 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV------GYSDITALHLALYAK 110 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE------EecHHHHHHHHHHHh
Confidence 5666788777665 378999999999995 6777778888776666665 256766655555544
No 45
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=62.47 E-value=22 Score=27.89 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=52.2
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHH----HH---HcCCCCCcEEEEecCCcchHH-HHHHHHHHHcCC--CCccccccEEE
Q 031219 51 RQADAFIALPGGYGTLEELLEVIT----WA---QLGIHDKPVGLLNVDGYYNSL-LSFIDKAVDEGF--IAPAARYIIVS 120 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~----~~---qlg~~~kPivlln~~Gfw~~l-~~~l~~~~~~gf--i~~~~~~~i~~ 120 (163)
..+|++|+.|=..+|+.-+..-++ .. ..-..++|++++=.+-+.++. ++-++.+.+.|+ +++. ...+.-
T Consensus 74 ~~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~-~g~~~~ 152 (181)
T TIGR00421 74 FPFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPM-PAFYTR 152 (181)
T ss_pred chhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCC-CcccCC
Confidence 358999999999999988764332 00 111257999998765343332 222556777674 3333 344555
Q ss_pred eCCHHHHHHHHHh
Q 031219 121 AQTAHELICKLEE 133 (163)
Q Consensus 121 ~~~~ee~~~~l~~ 133 (163)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 6889998888765
No 46
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=61.63 E-value=31 Score=28.11 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=36.2
Q ss_pred ChHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCC--CHHHHHHHHHHHHc
Q 031219 1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYG--TLEELLEVITWAQL 78 (163)
Q Consensus 1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~G--TLdEl~e~~~~~ql 78 (163)
|.-+|++++..||.-+ + .+..+....+++.+|++++=+|-.. ..+.+..+.. ..
T Consensus 20 ~~~~a~~~~~~g~~~~---~-------------------~~~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~--~~ 75 (242)
T cd01170 20 MNFVANVLLAIGASPI---M-------------------SDAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGK--AA 75 (242)
T ss_pred HhHHHHHHHHhCCchh---h-------------------cCCHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHH--HH
Confidence 6678888888888533 1 1224455566788999988444332 1222222221 12
Q ss_pred CCCCCcEEEEecC
Q 031219 79 GIHDKPVGLLNVD 91 (163)
Q Consensus 79 g~~~kPivlln~~ 91 (163)
..+++|++ ++..
T Consensus 76 ~~~~~pvV-lDp~ 87 (242)
T cd01170 76 NQLGKPVV-LDPV 87 (242)
T ss_pred HhcCCCEE-Eccc
Confidence 24577865 5553
No 47
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=61.61 E-value=43 Score=28.24 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCEEEEc--cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 43 HQRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIal--PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
++....++..||+||.. ..|+|. =++|+++. .+||+..+..| ...+ +.++ ....+.-
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~--~~lEAma~------G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~ 351 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGL--VAMEAQAC------GTPVVAARVGG-LPVA-------VADG-----ETGLLVD 351 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcCh--HHHHHHHc------CCCEEEecCCC-cHhh-------hccC-----CceEECC
Confidence 45666789999998863 456776 37777754 89999887643 3322 2211 1112222
Q ss_pred eCCHHHHHHHHHhhc
Q 031219 121 AQTAHELICKLEEYV 135 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (163)
.+|++++.+.|.+..
T Consensus 352 ~~d~~~la~~i~~~l 366 (405)
T TIGR03449 352 GHDPADWADALARLL 366 (405)
T ss_pred CCCHHHHHHHHHHHH
Confidence 358888877776643
No 48
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=61.53 E-value=7.3 Score=28.27 Aligned_cols=47 Identities=26% Similarity=0.397 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhcCE--EEEccCCCCCHHHHHHHHHHHHcCCC-CCcEEEEe
Q 031219 41 GMHQRKAEMARQADA--FIALPGGYGTLEELLEVITWAQLGIH-DKPVGLLN 89 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDa--fIalPGG~GTLdEl~e~~~~~qlg~~-~kPivlln 89 (163)
+..+....+.+..+. .|+.-||=||+.|+...+.- .... ..|+.++-
T Consensus 40 ~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~--~~~~~~~~l~iiP 89 (130)
T PF00781_consen 40 GHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMG--SDREDKPPLGIIP 89 (130)
T ss_dssp THHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCT--STSSS--EEEEEE
T ss_pred chHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhh--cCCCccceEEEec
Confidence 344444444555554 88889999999999877732 1111 23777763
No 49
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=60.88 E-value=20 Score=24.00 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=24.2
Q ss_pred CEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 031219 54 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 92 (163)
Q Consensus 54 DafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~G 92 (163)
=-+|.|| +|++|++.+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3489999 69999999876 566764 666676554
No 50
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=60.58 E-value=60 Score=26.64 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCC-------cccCCCcceEEecCCHHHHHHHHHHhcCE-EEEccCCCCCHHHHH-HHH
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPR-------EITGDTVGEVKAVSGMHQRKAEMARQADA-FIALPGGYGTLEELL-EVI 73 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~-------e~~~~~~~~li~~~~m~~Rk~~m~~~sDa-fIalPGG~GTLdEl~-e~~ 73 (163)
++|-+|+.-||++|-|+|+..... +.....+.|.++.+. -..+|.....+ |+++..- .+|.. .++
T Consensus 60 aLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~---~e~~~~~~~~iDF~vVDc~---~~d~~~~vl 133 (218)
T PF07279_consen 60 ALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA---PEEVMPGLKGIDFVVVDCK---REDFAARVL 133 (218)
T ss_pred HHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC---HHHHHhhccCCCEEEEeCC---chhHHHHHH
Confidence 467788999999999999865321 111223345454332 33455555554 7777776 46666 666
Q ss_pred HHHHcCCCC
Q 031219 74 TWAQLGIHD 82 (163)
Q Consensus 74 ~~~qlg~~~ 82 (163)
...+++...
T Consensus 134 ~~~~~~~~G 142 (218)
T PF07279_consen 134 RAAKLSPRG 142 (218)
T ss_pred HHhccCCCc
Confidence 666665433
No 51
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=60.03 E-value=27 Score=29.87 Aligned_cols=49 Identities=24% Similarity=0.284 Sum_probs=34.3
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
..|+|||.= |.=||+|....+.+.- .. +||||+-+- ....|...++.+.
T Consensus 78 ~~dGiVVtH-GTDTmeeTA~~L~~~l-~~-~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITH-GTDTMEETAYFLSLTL-EN-DKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEc-CcccHHHHHHHHHHHh-cC-CCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 478999886 4899999999998633 33 999999743 2244555555543
No 52
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=59.88 E-value=9.2 Score=31.22 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=30.1
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchH
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 96 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~ 96 (163)
-+++.||++|..-+..| +|++. ++||+++++.. ||+.
T Consensus 195 ~Ll~~s~~VvtinStvG-----lEAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVG-----LEALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHhCCEEEEECCHHH-----HHHHH------cCCceEEecCc-ccCC
Confidence 67999999999999988 46663 49999999864 7764
No 53
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.62 E-value=46 Score=27.48 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH
Q 031219 65 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF 100 (163)
Q Consensus 65 TLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~ 100 (163)
||+-+++......-.-...||+|+ |||++++..
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888888665433357899998 699998864
No 54
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.57 E-value=54 Score=27.67 Aligned_cols=64 Identities=28% Similarity=0.399 Sum_probs=40.1
Q ss_pred EccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchH-----HHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHH
Q 031219 58 ALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-----LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 131 (163)
Q Consensus 58 alPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~-----l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l 131 (163)
+|-+|. |++..++.+....-.-...|++|+. ||++ +.+|++.+.+.|. +.+.+.|=|-|--+.+
T Consensus 71 AL~~g~-t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~ 139 (265)
T COG0159 71 ALAAGV-TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDEL 139 (265)
T ss_pred HHHCCC-CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHH
Confidence 355555 6677777775443333467999984 7776 5556677777663 5666766665544444
No 55
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=58.30 E-value=18 Score=25.40 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCEEEEccC---CCCCHHHHHHHHHHHHcCCCCCcEE
Q 031219 44 QRKAEMARQADAFIALPG---GYGTLEELLEVITWAQLGIHDKPVG 86 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPG---G~GTLdEl~e~~~~~qlg~~~kPiv 86 (163)
.+--.|+..||+++.||| +-|..-|...+-.+ .+||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~l------Gl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKKL------GLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHC------CCeEe
Confidence 334456669999999999 88999998877654 55654
No 56
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=58.04 E-value=64 Score=27.03 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccE
Q 031219 41 GMHQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 118 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i 118 (163)
+..+........+|++|.-.- |+|. =++|+++ ..+||+..+..|...++ +.+| ....+
T Consensus 246 ~~~~~~~~~~~~~d~~v~~s~~Egf~~--~~lEAma------~G~Pvv~s~~~~g~~ei-------v~~~-----~~G~l 305 (359)
T PRK09922 246 QPWEVVQQKIKNVSALLLTSKFEGFPM--TLLEAMS------YGIPCISSDCMSGPRDI-------IKPG-----LNGEL 305 (359)
T ss_pred CcHHHHHHHHhcCcEEEECCcccCcCh--HHHHHHH------cCCCEEEeCCCCChHHH-------ccCC-----CceEE
Confidence 444555556667898886443 3443 4666664 48999998822333322 2222 23345
Q ss_pred EEeCCHHHHHHHHHhhcCC
Q 031219 119 VSAQTAHELICKLEEYVPK 137 (163)
Q Consensus 119 ~~~~~~ee~~~~l~~~~~~ 137 (163)
.-..|++++.+.|......
T Consensus 306 v~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 306 YTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred ECCCCHHHHHHHHHHHHhC
Confidence 5568999999999886543
No 57
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=57.75 E-value=30 Score=29.78 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 50 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
.+..|+|||+=| .=||+|-..++++.--+ +||||+.+- .-..|...+++..
T Consensus 75 ~~~~dG~VVtHG-TDTme~TA~~Ls~~l~~--~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 75 YDDYDGFVITHG-TDTMAYTAAALSFMLET--PKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred HhcCCeEEEccC-CchHHHHHHHHHHHcCC--CCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 345899999874 78999999998874322 999999753 2345556665553
No 58
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=57.65 E-value=49 Score=26.34 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=47.6
Q ss_pred eEEecCCH-HHHHHHHHHhcCEEEEccC-----CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 031219 35 EVKAVSGM-HQRKAEMARQADAFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 108 (163)
Q Consensus 35 ~li~~~~m-~~Rk~~m~~~sDafIalPG-----G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~g 108 (163)
.+.....+ .+....++..||++|.... |.|.-.=+.|++.. ++|++..+..+.-+ +. .+
T Consensus 276 ~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~------G~pvi~~~~~~~~~-~~-------~~- 340 (394)
T cd03794 276 NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAA------GKPVLASVDGESAE-LV-------EE- 340 (394)
T ss_pred cEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHC------CCcEEEecCCCchh-hh-------cc-
Confidence 34444433 3556677888999886533 23333446777754 89999987654322 21 11
Q ss_pred CCCccccccEEEeCCHHHHHHHHHhhc
Q 031219 109 FIAPAARYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 109 fi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (163)
.....+.-.+|++++.+.|.+..
T Consensus 341 ----~~~g~~~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 341 ----AGAGLVVPPGDPEALAAAILELL 363 (394)
T ss_pred ----CCcceEeCCCCHHHHHHHHHHHH
Confidence 11233444458888888887764
No 59
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=57.55 E-value=40 Score=27.04 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCEEEEccC----CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccE
Q 031219 43 HQRKAEMARQADAFIALPG----GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 118 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPG----G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i 118 (163)
.+....+++.||++|..-- |+|. =++|+++. .+|++..+..+ .+.+. ......+
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~--~~~Ea~a~------G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSG--VLAYAIGF------GKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccch--HHHHHHHc------CCCEEecCCCC-hheee-------------eCCCcEE
Confidence 4566778889999875321 3332 25556644 89999887653 22221 1122334
Q ss_pred EEeCCHHHHHHHHHhhcC
Q 031219 119 VSAQTAHELICKLEEYVP 136 (163)
Q Consensus 119 ~~~~~~ee~~~~l~~~~~ 136 (163)
.-.+|++++.+.|.....
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678888888876543
No 60
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=57.52 E-value=51 Score=26.23 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCEEEEc---cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEE
Q 031219 43 HQRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 119 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIal---PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~ 119 (163)
.+...-++..||++|.- ..|+|. =++|++.. ++|++..+..+ ...+ +.++ ....+.
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~ 311 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPL--VIREALAA------GVPVIASDIGG-MAEL-------VRDG-----VNGLLF 311 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHHC------CCCEEECCCCC-HHHH-------hcCC-----CcEEEE
Confidence 45666688899998864 355655 36777754 89999877643 2222 2211 123444
Q ss_pred EeCCHHHHHHHHHhhcC
Q 031219 120 SAQTAHELICKLEEYVP 136 (163)
Q Consensus 120 ~~~~~ee~~~~l~~~~~ 136 (163)
-.+|++++.+.+.+...
T Consensus 312 ~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 312 PPGDAEDLAAALERLID 328 (359)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 55668888888877543
No 61
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.51 E-value=60 Score=26.97 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=30.9
Q ss_pred EccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcCC
Q 031219 58 ALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEGF 109 (163)
Q Consensus 58 alPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~-----~l~~~~~~gf 109 (163)
+|-.|+ |++.+|+.+.-..-...+.|++++ +||++++. +++.+.+.|.
T Consensus 66 AL~~G~-~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 66 ALAAGV-TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred HHHcCC-CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 344554 567777777554433457899877 48887554 6777777664
No 62
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=57.48 E-value=68 Score=25.18 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeC
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 122 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 122 (163)
.+-...++..||++|.-...-|.--=++|+++. ++|++.-+..+ ..+++ .+ .....+.-.+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~------G~Pvi~s~~~~-~~~~i-------~~-----~~~g~~~~~~ 314 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAM------GRPVIATDVPG-CREAV-------ID-----GVNGFLVPPG 314 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHc------CCCEEEecCCC-chhhh-------hc-----CcceEEECCC
Confidence 344556788899887644332222346777754 89999876543 33222 11 1223344456
Q ss_pred CHHHHHHHHHhhc
Q 031219 123 TAHELICKLEEYV 135 (163)
Q Consensus 123 ~~ee~~~~l~~~~ 135 (163)
|++++.+.+....
T Consensus 315 ~~~~~~~~i~~l~ 327 (359)
T cd03808 315 DAEALADAIERLI 327 (359)
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887743
No 63
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=56.83 E-value=39 Score=27.35 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHH
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 125 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~e 125 (163)
...++..||++|.-...-|.--=++|+++. .+|+|..+.. ....++ .+ ...+.-.+|++
T Consensus 256 ~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~------G~PvI~~~~~-~~~e~i------------~~--~g~~~~~~~~~ 314 (360)
T cd04951 256 IAAYYNAADLFVLSSAWEGFGLVVAEAMAC------ELPVVATDAG-GVREVV------------GD--SGLIVPISDPE 314 (360)
T ss_pred HHHHHHhhceEEecccccCCChHHHHHHHc------CCCEEEecCC-ChhhEe------------cC--CceEeCCCCHH
Confidence 345678899877655422222247777764 8999987653 222221 11 33455568999
Q ss_pred HHHHHHHhhc
Q 031219 126 ELICKLEEYV 135 (163)
Q Consensus 126 e~~~~l~~~~ 135 (163)
++.+.+.+..
T Consensus 315 ~~~~~i~~ll 324 (360)
T cd04951 315 ALANKIDEIL 324 (360)
T ss_pred HHHHHHHHHH
Confidence 9888887763
No 64
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=56.38 E-value=22 Score=27.83 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=51.2
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHH-----HHHcC-CCCCcEEEEe---cCCcchH--HHHHHHHHHHcCC--CCcccc-
Q 031219 50 ARQADAFIALPGGYGTLEELLEVIT-----WAQLG-IHDKPVGLLN---VDGYYNS--LLSFIDKAVDEGF--IAPAAR- 115 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~-----~~qlg-~~~kPivlln---~~Gfw~~--l~~~l~~~~~~gf--i~~~~~- 115 (163)
...+|++|+.|=..+|+.-+..-++ ..-+. ..++|+++.- . ..|+. ..+-++.+.+.|+ +.|...
T Consensus 74 ~~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~-~M~~~p~~~~nl~~L~~~G~~vi~P~~g~ 152 (177)
T TIGR02113 74 AKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNT-KMYQNPITQRNIKILKKIGYQEIQPKESL 152 (177)
T ss_pred chhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCH-HHhCCHHHHHHHHHHHHCCCEEECCCcCc
Confidence 4578999999999999987764332 11111 2378999963 4 36764 3445777777774 344431
Q ss_pred -----ccEEEeCCHHHHHHHHHhh
Q 031219 116 -----YIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 116 -----~~i~~~~~~ee~~~~l~~~ 134 (163)
...==..+++++++.+.+.
T Consensus 153 la~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 153 LACGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred ccCCCccccCCCCHHHHHHHHHHh
Confidence 1122234577887777653
No 65
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=56.19 E-value=38 Score=28.11 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=39.5
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCC-CCCcEEEEe---cCCcchHHHHHHHHHHHc---CCCCccccccEEEeCCHHHH
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKAVDE---GFIAPAARYIIVSAQTAHEL 127 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~-~~kPivlln---~~Gfw~~l~~~l~~~~~~---gfi~~~~~~~i~~~~~~ee~ 127 (163)
|+|+|-||.||= +|. .+||++=+. ..-+.+-..+.+..+... +. .=..-.+..-.+.++.
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~--~Ip~~imts~~t~~~t 68 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSC--KIPEQLMNSKYTHEKT 68 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCC--CCCEEEEcCchhHHHH
Confidence 789999999992 243 477777554 444666666666543221 10 0011122333556778
Q ss_pred HHHHHhhc
Q 031219 128 ICKLEEYV 135 (163)
Q Consensus 128 ~~~l~~~~ 135 (163)
.+++++..
T Consensus 69 ~~~l~~~~ 76 (266)
T cd04180 69 QCYFEKIN 76 (266)
T ss_pred HHHHHHcC
Confidence 88888764
No 66
>PLN02591 tryptophan synthase
Probab=55.94 E-value=70 Score=26.51 Aligned_cols=46 Identities=26% Similarity=0.500 Sum_probs=30.7
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcCC
Q 031219 59 LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEGF 109 (163)
Q Consensus 59 lPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~-----~l~~~~~~gf 109 (163)
|-.|. |++.+|+.+.-.+ ...+.|++++ +||++++. |++.+.+.|.
T Consensus 57 L~~G~-~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 57 LEKGT-TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred HHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcCC
Confidence 33443 6788888886544 3357899877 48887555 6777777663
No 67
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=55.38 E-value=55 Score=26.36 Aligned_cols=72 Identities=22% Similarity=0.353 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCEEEEcc--------CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccc
Q 031219 43 HQRKAEMARQADAFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 114 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalP--------GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~ 114 (163)
.+....++..||+++... .|+|. =++|++.. ++|++..+..+. ..++ .+ ..
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~~-~~~i-------~~-----~~ 304 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLPV--VLMEAMAM------GLPVISTDVSGI-PELV-------ED-----GE 304 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCccH--HHHHHHHc------CCCEEecCCCCc-chhh-------hC-----CC
Confidence 466777888999887743 34443 57788754 899998776432 2222 11 11
Q ss_pred cccEEEeCCHHHHHHHHHhhc
Q 031219 115 RYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~~ 135 (163)
...+.-.+|++++.+.|.+..
T Consensus 305 ~g~~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 305 TGLLVPPGDPEALADAIERLL 325 (355)
T ss_pred ceEEeCCCCHHHHHHHHHHHH
Confidence 223333348888888887654
No 68
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=54.69 E-value=16 Score=30.83 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHHh-----cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHc-CCCC
Q 031219 39 VSGMHQRKAEMARQ-----ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDE-GFIA 111 (163)
Q Consensus 39 ~~~m~~Rk~~m~~~-----sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~-gfi~ 111 (163)
..+-.+|-+-|.+. .||++..-||+|+. ++..-+.+..+..++|+++ -|+++-.+.-.+... |+++
T Consensus 48 ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi------GySDiTaL~~al~~~~g~~t 119 (308)
T cd07062 48 SASPEERAEELMAAFADPSIKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI------GYSDITALHLAIYKKTGLVT 119 (308)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE------eccHHHHHHHHHHHhcCCeE
Confidence 45667777666654 58999999999984 7777788888877777665 267766655555444 6543
No 69
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=54.60 E-value=71 Score=27.25 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCEEEEc---cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEE-
Q 031219 44 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV- 119 (163)
Q Consensus 44 ~Rk~~m~~~sDafIal---PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~- 119 (163)
+....+...||+||.- ..|+|.. ++|+++. .+||+..+..| ..++ +.+| ....+.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma~------G~PVI~s~~gg-~~Ei-------v~~~-----~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMAA------GKPVLASTKGG-ITEF-------VLEG-----ITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHHc------CCCEEEeCCCC-cHhh-------cccC-----CceEEEe
Confidence 4556678899999863 3566653 6777754 89999987643 2222 2111 122212
Q ss_pred EeCCHHHHHHHHHhhc
Q 031219 120 SAQTAHELICKLEEYV 135 (163)
Q Consensus 120 ~~~~~ee~~~~l~~~~ 135 (163)
-..|++++.+.|.+..
T Consensus 327 ~~~d~~~la~~I~~ll 342 (380)
T PRK15484 327 EPMTSDSIISDINRTL 342 (380)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2458888888887654
No 70
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=54.54 E-value=1.1e+02 Score=26.41 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCEEEEc-cC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEE
Q 031219 43 HQRKAEMARQADAFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 119 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIal-PG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~ 119 (163)
.+....++..||++|.+ +. |.|--.-++|+++ ..+|||..+..| .. .++++| ...+.
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~-~~-------eiv~~~------~~G~l 364 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC-ID-------ELVKHG------ENGLV 364 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC-HH-------HHhcCC------CCEEE
Confidence 45555678889998853 21 2333335777775 489999877542 22 233222 12233
Q ss_pred EeCCHHHHHHHHHhhcC
Q 031219 120 SAQTAHELICKLEEYVP 136 (163)
Q Consensus 120 ~~~~~ee~~~~l~~~~~ 136 (163)
+ +|++++.+.|.+...
T Consensus 365 v-~d~~~la~~i~~ll~ 380 (415)
T cd03816 365 F-GDSEELAEQLIDLLS 380 (415)
T ss_pred E-CCHHHHHHHHHHHHh
Confidence 3 689998888876533
No 71
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=54.34 E-value=25 Score=28.28 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=54.0
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcC-------CCCCcEEEEecCCcchH--HHHHHHHHHHcC-CCCccccccEEEeC
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYNS--LLSFIDKAVDEG-FIAPAARYIIVSAQ 122 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg-------~~~kPivlln~~Gfw~~--l~~~l~~~~~~g-fi~~~~~~~i~~~~ 122 (163)
.|+-|+.|=+..||..+.--++-+-+. +.++|+||+--+--+.- |.++++ +.+.| .|-|.....++--.
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlk-l~~~GaiI~Pp~PaFY~~P~ 159 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLK-LAEMGAIIMPPMPAFYHKPQ 159 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHH-HHHCCCEecCCChhhhcCCC
Confidence 478999999999999998766643333 24789999865433332 333333 33444 45566666667778
Q ss_pred CHHHHHHHHHh
Q 031219 123 TAHELICKLEE 133 (163)
Q Consensus 123 ~~ee~~~~l~~ 133 (163)
+.||+++++-.
T Consensus 160 sieDlvd~~v~ 170 (191)
T COG0163 160 SIEDLVDFVVG 170 (191)
T ss_pred CHHHHHHHHHH
Confidence 89999988854
No 72
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.12 E-value=35 Score=29.29 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=44.9
Q ss_pred HHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCc-chHHHHHHHHHHHcCCCCcccc
Q 031219 47 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAAR 115 (163)
Q Consensus 47 ~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gf-w~~l~~~l~~~~~~gfi~~~~~ 115 (163)
--|+..||+||+---++.-+.|.. ..+||+.++-..+| =..+.-|++.+++++..++-..
T Consensus 239 ~~~La~Adyii~TaDSinM~sEAa---------sTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 239 IDMLAAADYIISTADSINMCSEAA---------STGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HHHHhhcceEEEecchhhhhHHHh---------ccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 357889999999888888777755 24899999988888 4445556788888776555444
No 73
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=53.89 E-value=69 Score=26.90 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=41.3
Q ss_pred EEecCCH-HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccc
Q 031219 36 VKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 114 (163)
Q Consensus 36 li~~~~m-~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~ 114 (163)
++..+.+ ..+...++..||++|. |.| +. +.|++.+ .+|++.....|-+..+ +..|
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a~------g~PvI~~~~~~~~~e~-------~~~g------ 312 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPSL------GKPVLVLRDTTERPET-------VEAG------ 312 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHHc------CCCEEECCCCCCChHH-------HhcC------
Confidence 3334433 3344456777887754 443 22 4556654 8999986322323322 2222
Q ss_pred cccEEEeCCHHHHHHHHHhhc
Q 031219 115 RYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~~ 135 (163)
..+.+..|++++.+.+.+..
T Consensus 313 -~~~lv~~d~~~i~~ai~~ll 332 (365)
T TIGR00236 313 -TNKLVGTDKENITKAAKRLL 332 (365)
T ss_pred -ceEEeCCCHHHHHHHHHHHH
Confidence 22334568999988887754
No 74
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=53.78 E-value=65 Score=23.47 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=47.5
Q ss_pred EEecCCH-HHHHHHHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCc
Q 031219 36 VKAVSGM-HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAP 112 (163)
Q Consensus 36 li~~~~m-~~Rk~~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~ 112 (163)
+...... .+....+...||++|..-- |+|+ =+.|++.. .+|++.-+.. .+..+ +.++
T Consensus 75 i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~~------g~pvI~~~~~-~~~e~-------~~~~---- 134 (172)
T PF00534_consen 75 IIFLGYVPDDELDELYKSSDIFVSPSRNEGFGL--SLLEAMAC------GCPVIASDIG-GNNEI-------INDG---- 134 (172)
T ss_dssp EEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHHT------T-EEEEESST-HHHHH-------SGTT----
T ss_pred ccccccccccccccccccceecccccccccccc--cccccccc------ccceeecccc-CCcee-------eccc----
Confidence 3333433 5777888999999998754 4444 56677754 8899988743 33322 2222
Q ss_pred cccccEEEeCCHHHHHHHHHhhc
Q 031219 113 AARYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 113 ~~~~~i~~~~~~ee~~~~l~~~~ 135 (163)
....+.-..+++++.+.|.+..
T Consensus 135 -~~g~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 135 -VNGFLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp -TSEEEESTTSHHHHHHHHHHHH
T ss_pred -cceEEeCCCCHHHHHHHHHHHH
Confidence 2334455667888888887653
No 75
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=53.74 E-value=1.2e+02 Score=26.79 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=43.2
Q ss_pred cCEE-EEccCCCCCHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHH
Q 031219 53 ADAF-IALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 130 (163)
Q Consensus 53 sDaf-IalPGG~GTLdEl~e~~~~~qlg-~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~ 130 (163)
.|++ |.++||+.-.+++.+.+.-..-. ..+||+++ ...| ..-....+.+.+.| -.++..+|.+|+++.
T Consensus 311 VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv-~l~G--~~~e~~~~iL~~~G-------ipvf~~~~~~~a~~~ 380 (392)
T PRK14046 311 VKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVV-RLAG--TNVEEGRKILAESG-------LPIITADTLAEAAEK 380 (392)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EcCC--CCHHHHHHHHHHcC-------CCeeecCCHHHHHHH
Confidence 3554 45578888888888777643222 25789954 4444 11112122233333 257889999999988
Q ss_pred HHhh
Q 031219 131 LEEY 134 (163)
Q Consensus 131 l~~~ 134 (163)
.-+.
T Consensus 381 ~v~~ 384 (392)
T PRK14046 381 AVEA 384 (392)
T ss_pred HHHH
Confidence 7654
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=53.34 E-value=81 Score=25.76 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCEEEEcc--------CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccc
Q 031219 44 QRKAEMARQADAFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAAR 115 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--------GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~ 115 (163)
+-...++..||++|.-. -|+|+ =++|+++. .+|++.-+..+ ..+++ . ....
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~--~~~EA~a~------G~PvI~s~~~~-~~e~i-------~-----~~~~ 314 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPV--VLLEAQAS------GVPVVATRHGG-IPEAV-------E-----DGET 314 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCch--HHHHHHHc------CCCEEEeCCCC-chhhe-------e-----cCCe
Confidence 44566788999877521 23444 47777754 89999887643 22211 1 1122
Q ss_pred ccEEEeCCHHHHHHHHHhhcC
Q 031219 116 YIIVSAQTAHELICKLEEYVP 136 (163)
Q Consensus 116 ~~i~~~~~~ee~~~~l~~~~~ 136 (163)
..+.-.+|++++.+.|.+...
T Consensus 315 g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 315 GLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred eEEECCCCHHHHHHHHHHHHc
Confidence 333335688888888877543
No 77
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.16 E-value=85 Score=25.37 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+....++..||++|.-. .|+|. =++|+++. .+|++..+..|. ..++ .......+.-.
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~~------g~PvI~~~~~~~-~e~~------------~~~~~g~~~~~ 314 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPN--TAIEALAC------GTPVVAFDVGGI-PDIV------------DHGVTGYLAKP 314 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccH--HHHHHHhc------CCCEEEecCCCC-hhhe------------eCCCceEEeCC
Confidence 34556788999987643 45554 57777754 899998876432 2221 11112333344
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
.|++++.+.+.+..
T Consensus 315 ~~~~~~~~~l~~l~ 328 (365)
T cd03825 315 GDPEDLAEGIEWLL 328 (365)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888887777654
No 78
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=52.55 E-value=83 Score=25.10 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 94 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw 94 (163)
+.+...+.|+|+||- |...+++.+.-.. ..--+.+.+++.+-+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 344678999999995 6678888876443 2334677777776676
No 79
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=51.96 E-value=15 Score=28.91 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHhcCEEEEccCC--CCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 41 GMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDafIalPGG--~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
-|..|++.|+++||.+|++=-| -|+..=......- +-..++.||.++.
T Consensus 118 ~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~-~~~~~~y~i~~I~ 167 (177)
T PF06908_consen 118 QLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKK-YQEQKGYPIDLID 167 (177)
T ss_dssp HHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHH-HHHHH---EEEE-
T ss_pred HHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHH-HhhccCCeEEEec
Confidence 4579999999999987776332 2332222222211 1112467888875
No 80
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=51.66 E-value=70 Score=27.76 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCEEEEcc--------CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccc
Q 031219 44 QRKAEMARQADAFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAAR 115 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--------GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~ 115 (163)
+....++..||+||.-. -|+|. =++|+++. .+|||..+..|. . .++.+ ...
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~--~llEAma~------G~PVI~t~~~g~-~-------E~v~~-----~~~ 348 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPV--ALMEAMAV------GIPVVSTLHSGI-P-------ELVEA-----DKS 348 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccH--HHHHHHhC------CCCEEEeCCCCc-h-------hhhcC-----CCc
Confidence 44456788999998632 34444 57788864 899998876542 2 22222 122
Q ss_pred ccEEEeCCHHHHHHHHHhhc
Q 031219 116 YIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 116 ~~i~~~~~~ee~~~~l~~~~ 135 (163)
..+.-..|++++.+.|.+..
T Consensus 349 G~lv~~~d~~~la~ai~~l~ 368 (406)
T PRK15427 349 GWLVPENDAQALAQRLAAFS 368 (406)
T ss_pred eEEeCCCCHHHHHHHHHHHH
Confidence 33444568888888877654
No 81
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=51.65 E-value=70 Score=25.03 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+-...++..||++|... +|.|+ =++|++.. ++|++..+..+ ...++ . ......+.-.
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~~------g~pvI~~~~~~-~~~~~-------~-----~~~~g~~~~~ 325 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGL--VLLEAMAA------GLPVVASDVGG-IPEVV-------E-----DGETGLLVPP 325 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccc--hHHHHHHc------CCcEEEeCCCC-hhHHh-------c-----CCcceEEeCC
Confidence 45556778899877543 34444 36667754 89999887643 22222 1 1122334444
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
+|++++.+.|.+..
T Consensus 326 ~~~~~l~~~i~~~~ 339 (374)
T cd03801 326 GDPEALAEAILRLL 339 (374)
T ss_pred CCHHHHHHHHHHHH
Confidence 55888888887753
No 82
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=51.52 E-value=36 Score=29.35 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=38.1
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE-----ecCCcchHHHHHHHHHHH---cCCCCccccccEEEeCCHHH
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-----NVDGYYNSLLSFIDKAVD---EGFIAPAARYIIVSAQTAHE 126 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~~~kPivll-----n~~Gfw~~l~~~l~~~~~---~gfi~~~~~~~i~~~~~~ee 126 (163)
|||.|-||.|| .+|. ..|=.++ +..-|++-..+++..+.+ ++.=..=..-+....++-++
T Consensus 2 a~vllaGG~GT-----------RLG~-~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~ 69 (315)
T cd06424 2 VFVLVAGGLGE-----------RLGY-SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSK 69 (315)
T ss_pred EEEEecCCCcc-----------ccCC-CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHH
Confidence 79999999999 3454 3343333 333477777777766543 21000001111233356777
Q ss_pred HHHHHHhh
Q 031219 127 LICKLEEY 134 (163)
Q Consensus 127 ~~~~l~~~ 134 (163)
..+++++.
T Consensus 70 T~~~fe~n 77 (315)
T cd06424 70 TLKLLEEN 77 (315)
T ss_pred HHHHHHHC
Confidence 88888763
No 83
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=51.21 E-value=77 Score=25.93 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeC
Q 031219 45 RKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 122 (163)
Q Consensus 45 Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 122 (163)
....++..||++|.-. .|+|.- +.|+++. .+|+|..+..| ..++ +.+| ....+.-.+
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~--~~EAma~------g~PvI~s~~~~-~~e~-------i~~~-----~~G~~~~~~ 321 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLA--ALEAMAC------GVPVVASNAGG-IPEV-------VKHG-----ETGFLVDVG 321 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccH--HHHHHHc------CCCEEEeCCCC-chhh-------hcCC-----CceEEcCCC
Confidence 3556678889887542 455542 6666653 89999987653 2222 2111 122233334
Q ss_pred CHHHHHHHHHhh
Q 031219 123 TAHELICKLEEY 134 (163)
Q Consensus 123 ~~ee~~~~l~~~ 134 (163)
|++++.+.+...
T Consensus 322 ~~~~l~~~i~~l 333 (371)
T cd04962 322 DVEAMAEYALSL 333 (371)
T ss_pred CHHHHHHHHHHH
Confidence 778777777654
No 84
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=50.33 E-value=73 Score=27.01 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCEEEE--ccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 43 HQRKAEMARQADAFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIa--lPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
++....++..||++|. .|.|+|. =++|+++ ..+|||..+..| ..++ +. ......+.-
T Consensus 291 ~~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g-~~e~-------i~-----~~~~G~lv~ 349 (396)
T cd03818 291 YDQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAP-VREV-------IT-----DGENGLLVD 349 (396)
T ss_pred HHHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCC-chhh-------cc-----cCCceEEcC
Confidence 3445567788999886 3445543 3667775 489999887643 2222 21 112233444
Q ss_pred eCCHHHHHHHHHhhc
Q 031219 121 AQTAHELICKLEEYV 135 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (163)
.+|++++.+.|.+..
T Consensus 350 ~~d~~~la~~i~~ll 364 (396)
T cd03818 350 FFDPDALAAAVIELL 364 (396)
T ss_pred CCCHHHHHHHHHHHH
Confidence 567888888876653
No 85
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=50.24 E-value=64 Score=22.47 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=41.3
Q ss_pred EEecCCHHHHHHHHHHhcCEEEEc-cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccc
Q 031219 36 VKAVSGMHQRKAEMARQADAFIAL-PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 114 (163)
Q Consensus 36 li~~~~m~~Rk~~m~~~sDafIal-PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~ 114 (163)
+.....+ +....++..+|+.|.. .=+.|+-.-++|.+. ..+|++..+. + +..+. .. .
T Consensus 55 v~~~g~~-~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~~------------~~-~ 112 (135)
T PF13692_consen 55 VRFHGFV-EELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGIV------------EE-D 112 (135)
T ss_dssp EEEE-S--HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCHS----------------
T ss_pred EEEcCCH-HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhhe------------ee-c
Confidence 3334444 4567778889987763 223466677888884 4999998764 2 22221 11 1
Q ss_pred cccEEEeCCHHHHHHHHHhh
Q 031219 115 RYIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 115 ~~~i~~~~~~ee~~~~l~~~ 134 (163)
...+.+.+|++++.+.|.+.
T Consensus 113 ~~~~~~~~~~~~l~~~i~~l 132 (135)
T PF13692_consen 113 GCGVLVANDPEELAEAIERL 132 (135)
T ss_dssp SEEEE-TT-HHHHHHHHHHH
T ss_pred CCeEEECCCHHHHHHHHHHH
Confidence 23344499999999998765
No 86
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=49.71 E-value=15 Score=30.69 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
.+++.+.++.=|++.+|+||.++..+++.+ .---||+|+
T Consensus 167 l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 167 LRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp HHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 457788889999999999999999999976 556788885
No 87
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=49.56 E-value=1.1e+02 Score=24.50 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCEEEEc---cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 44 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 44 ~Rk~~m~~~sDafIal---PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
+.....+..||+++.. ..|+|. =++|+++. .+|+|..+..| ..++ +++| ..-.+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~--~~lEAma~------G~PvI~~~~~~-~~e~-------i~~~-------~~g~l 291 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGL--VMIEAMAC------GTPVIAFRRGA-VPEV-------VEDG-------VTGFL 291 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcch--HHHHHHhc------CCCEEEeCCCC-chhh-------eeCC-------CcEEE
Confidence 3345678899998875 357776 37788854 89999988753 2222 2221 11223
Q ss_pred eCCHHHHHHHHHhh
Q 031219 121 AQTAHELICKLEEY 134 (163)
Q Consensus 121 ~~~~ee~~~~l~~~ 134 (163)
+++++++.+.|.+.
T Consensus 292 ~~~~~~l~~~l~~l 305 (335)
T cd03802 292 VDSVEELAAAVARA 305 (335)
T ss_pred eCCHHHHHHHHHHH
Confidence 34488888877765
No 88
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=48.66 E-value=53 Score=27.09 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=41.1
Q ss_pred HHHHHHhcCEEEE--ccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 46 KAEMARQADAFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 46 k~~m~~~sDafIa--lPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
...++..||+++. ...|+|.- ++|+++. .+|++..+..| ... ++.++ ....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a~------G~Pvi~s~~~~-~~e-------~i~~~-----~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMAC------GLPVVATAVGG-PRD-------IVVDG-----VTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHhc------CCCEEECCCCC-HHH-------HccCC-----CCeEEeCCCC
Confidence 4556788999874 34556653 6777754 89999876543 222 22221 2223333457
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.|.+..
T Consensus 355 ~~~l~~~i~~l~ 366 (398)
T cd03800 355 PEALAAALRRLL 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 888888887653
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=48.62 E-value=1.6e+02 Score=24.96 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCEEEEcc-C--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEE
Q 031219 43 HQRKAEMARQADAFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 119 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalP-G--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~ 119 (163)
++.-..++..||+||... . |.|--.=++|+++. .+||+..+..| - ..++.+| . ..+.
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~------G~PVVa~~~gg-~-------~eiv~~g-----~-~G~l 356 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCAVSYSC-I-------GELVKDG-----K-NGLL 356 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC------CCCEEEecCCC-h-------HHHccCC-----C-CeEE
Confidence 455566788999998631 2 22333457777754 89999987654 1 1233222 1 2222
Q ss_pred EeCCHHHHHHHHHh
Q 031219 120 SAQTAHELICKLEE 133 (163)
Q Consensus 120 ~~~~~ee~~~~l~~ 133 (163)
+++++++.+.|.+
T Consensus 357 -v~~~~~la~~i~~ 369 (371)
T PLN02275 357 -FSSSSELADQLLE 369 (371)
T ss_pred -ECCHHHHHHHHHH
Confidence 3478888887765
No 90
>PRK13660 hypothetical protein; Provisional
Probab=47.07 E-value=1.3e+02 Score=23.76 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCEEEEccCCC--CCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 42 MHQRKAEMARQADAFIALPGGY--GTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 42 m~~Rk~~m~~~sDafIalPGG~--GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
|..|++.|+++||.+|++=-|- |..--....+ ..+-..++.||.++.
T Consensus 119 ~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A-~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 119 FRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAA-KKKQEKEDYPLDLIT 167 (182)
T ss_pred HHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHH-HHhhhccCceEEEeC
Confidence 7999999999999988853321 2222222222 112124578888873
No 91
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=46.79 E-value=21 Score=30.68 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=32.9
Q ss_pred CcchHHHHHHHHHHHcCCCCccccccE---EEeCCHHHHHHHHHhh
Q 031219 92 GYYNSLLSFIDKAVDEGFIAPAARYII---VSAQTAHELICKLEEY 134 (163)
Q Consensus 92 Gfw~~l~~~l~~~~~~gfi~~~~~~~i---~~~~~~ee~~~~l~~~ 134 (163)
.+|+-+-.-+..|+.+|.|+++..+.+ .+..+++|+.+.+++.
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 468888888999999999999976654 7889999999998874
No 92
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=46.43 E-value=69 Score=25.31 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=39.3
Q ss_pred HHHHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 46 KAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 46 k~~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
...++..||++|.-.. |+|+ =++|++.. ++|+|..+..+ ...++. . ...+.-.+|
T Consensus 262 ~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a~------g~PvI~~~~~~-~~e~~~---~-----------~g~~~~~~~ 318 (365)
T cd03807 262 VPALLNALDVFVLSSLSEGFPN--VLLEAMAC------GLPVVATDVGD-NAELVG---D-----------TGFLVPPGD 318 (365)
T ss_pred HHHHHHhCCEEEeCCccccCCc--HHHHHHhc------CCCEEEcCCCC-hHHHhh---c-----------CCEEeCCCC
Confidence 3456788998775322 2333 36677754 89999876543 232221 1 223444567
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.+.+..
T Consensus 319 ~~~l~~~i~~l~ 330 (365)
T cd03807 319 PEALAEAIEALL 330 (365)
T ss_pred HHHHHHHHHHHH
Confidence 888888777653
No 93
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=46.07 E-value=1.5e+02 Score=23.90 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCEEEEcc---CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEE
Q 031219 43 HQRKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 119 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalP---GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~ 119 (163)
.+-....+..||++|... .|+|+ =++|+++. .+|+|..+..| ..+++. ++ ....+.
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a~------G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~ 312 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGR--TAVEAQAM------GRPVIASDHGG-ARETVR-------PG-----ETGLLV 312 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCch--HHHHHHhc------CCCEEEcCCCC-cHHHHh-------CC-----CceEEe
Confidence 445566788899987643 45664 46777764 89999987643 343332 11 123444
Q ss_pred EeCCHHHHHHHHHh
Q 031219 120 SAQTAHELICKLEE 133 (163)
Q Consensus 120 ~~~~~ee~~~~l~~ 133 (163)
-.+|++++.+.|..
T Consensus 313 ~~~~~~~l~~~i~~ 326 (355)
T cd03819 313 PPGDAEALAQALDQ 326 (355)
T ss_pred CCCCHHHHHHHHHH
Confidence 56789988888854
No 94
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=45.87 E-value=1.9e+02 Score=24.54 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=57.9
Q ss_pred HHHHHHhCCCeEEEE-eCCCCCCCcccCCCcceEEecC--CHHHHH-HHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcC
Q 031219 4 VSQAVYDGGRHVLGV-IPKTLMPREITGDTVGEVKAVS--GMHQRK-AEMARQADAFIALPGGYGTLEELLEVITWAQLG 79 (163)
Q Consensus 4 va~ga~~~GG~viGI-iP~~~~~~e~~~~~~~~li~~~--~m~~Rk-~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg 79 (163)
.+.+|+..|--.+-| +|.... ........++++.. +...+. ..+.+..|++++=| |+|.-+|..+++...-..
T Consensus 51 aa~aAl~~GaglV~v~~~~~~~--~~~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviGp-GlG~~~~~~~~~~~~l~~ 127 (284)
T COG0063 51 AALAALRAGAGLVSLASPPEAA--SALKSYLPELMVIEVEGKKLLEERELVERADAVVIGP-GLGRDAEGQEALKELLSS 127 (284)
T ss_pred HHHHHHHhCCCeEEEecchhhh--hhHhhcCcceeEeecccchhhHHhhhhccCCEEEECC-CCCCCHHHHHHHHHHHhc
Confidence 466777776543333 454321 11223445655433 332222 25678888877654 688888777666432222
Q ss_pred CCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHH
Q 031219 80 IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 132 (163)
Q Consensus 80 ~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 132 (163)
.. +|+|+- -++.+ .+.+...... ...+.++..+-|..+++.
T Consensus 128 ~~-~p~ViD-ADaL~--------~la~~~~~~~--~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 128 DL-KPLVLD-ADALN--------LLAELPDLLD--ERKVVLTPHPGEFARLLG 168 (284)
T ss_pred cC-CCEEEe-CcHHH--------HHHhCccccc--CCcEEECCCHHHHHHhcC
Confidence 22 899864 33221 1111111111 112777777777766653
No 95
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=45.75 E-value=1e+02 Score=22.40 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=5.9
Q ss_pred CEEEEccCCCC
Q 031219 54 DAFIALPGGYG 64 (163)
Q Consensus 54 DafIalPGG~G 64 (163)
|++|||.||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 45555555555
No 96
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=45.59 E-value=62 Score=27.98 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=39.6
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc--------ccccEEE
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA--------ARYIIVS 120 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~--------~~~~i~~ 120 (163)
.+..||++|.-. |..|+ |++ . ..+|+|+...-..+.-.+. ++++.-.+++-. ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---a------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---L------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---H------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 567888887666 55676 544 3 3899998754333332222 223222222111 1223333
Q ss_pred eCCHHHHHHHHHhhcC
Q 031219 121 AQTAHELICKLEEYVP 136 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~~ 136 (163)
.-+++.+.+.+.+...
T Consensus 331 ~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 ECTPHPLAIALLLLLE 346 (385)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 3467888777777643
No 97
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=44.61 E-value=57 Score=29.02 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=34.7
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
.|+|||.=| .=||+|-..++++.-- ..+|||||.+- .---|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~-~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFE-TLPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhh-CCCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689998875 8899999999886432 23899999863 2234556666553
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=44.60 E-value=1.1e+02 Score=25.63 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHH
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITW 75 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~ 75 (163)
.+.-+.+.+..+.-|+.-||+||.++...++.+
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~Amel 196 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL 196 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHc
Confidence 444446677788999999999999999999864
No 99
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=44.43 E-value=1e+02 Score=24.99 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 43 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
.+....+...||++|.-.- |+|. =++|+++. .+|+|.-+..| ...++. . ....+..
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~--~~lEAma~------G~PvI~s~~~~-~~~~i~---~----------~~~~~~~ 314 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPL--VLIEAQAS------GLPCILSDTIT-KEVDLT---D----------LVKFLSL 314 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCH--HHHHHHHh------CCCEEEEcCCc-hhhhhc---c----------CccEEeC
Confidence 4445567888998875432 3333 46777765 89999987653 222211 1 1233444
Q ss_pred eCCHHHHHHHHHhhcC
Q 031219 121 AQTAHELICKLEEYVP 136 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~~ 136 (163)
.++++++.+.|.+...
T Consensus 315 ~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 315 DESPEIWAEEILKLKS 330 (358)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4567988888877543
No 100
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=44.36 E-value=72 Score=25.93 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 42 MHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 42 m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+..+....++.||.+|++ ||=-.+.-+..+.+.-....|++++|.+. .. + +.....-+.+.
T Consensus 165 ~~~~~~~~~~~aDlllvv----GTSl~V~pa~~l~~~~~~~~~~v~iN~~~-----------~~---~-~~~~~~d~~~~ 225 (235)
T cd01408 165 FFSHMEEDKEEADLLIVI----GTSLKVAPFASLPSRVPSEVPRVLINREP-----------VG---H-LGKRPFDVALL 225 (235)
T ss_pred HHHHHHHHHhcCCEEEEE----CCCCeeccHHHHHHHHhCCCcEEEEeCCC-----------CC---C-CCCCCcCEEEe
Confidence 345666678889999995 44333333333333223468999999651 00 0 00112346788
Q ss_pred CCHHHHHHHH
Q 031219 122 QTAHELICKL 131 (163)
Q Consensus 122 ~~~ee~~~~l 131 (163)
.+.+|+++.|
T Consensus 226 ~~~~~~l~~~ 235 (235)
T cd01408 226 GDCDDGVREL 235 (235)
T ss_pred CCHHHHHHhC
Confidence 8888887653
No 101
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=44.03 E-value=31 Score=23.61 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHcCCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCccccccEEEeCCHHHHHHHHHhh
Q 031219 75 WAQLGIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 75 ~~qlg~~~kPivlln~~Gfw~~l~~~l~~-~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (163)
++..+.+-+|++.++.+|..+.+++.++. +....++.-.... ....+.+++.+.|++.
T Consensus 9 Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 9 LRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEK 67 (84)
T ss_dssp HHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHH
Confidence 34444567999999999999999998875 4443333222111 1233455666666654
No 102
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=43.86 E-value=87 Score=24.52 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHH-------HHHcCCCCCcEEEEec--CCcchH--HHHHHHHHHHcCCC--Ccccc
Q 031219 49 MARQADAFIALPGGYGTLEELLEVIT-------WAQLGIHDKPVGLLNV--DGYYNS--LLSFIDKAVDEGFI--APAAR 115 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~-------~~qlg~~~kPivlln~--~Gfw~~--l~~~l~~~~~~gfi--~~~~~ 115 (163)
+.+.+|++|+.|=..+|+.-+..-++ ...+ ..++|++++=. ...|.. ..+-++.+.+.|+. ++...
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~-~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g 152 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALAL-PATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEG 152 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHc-CCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCC
Confidence 34679999999999999987754222 1111 24799999742 135554 23346777777743 34321
Q ss_pred c------cEEEeCCHHHHHHHHHhhcC
Q 031219 116 Y------IIVSAQTAHELICKLEEYVP 136 (163)
Q Consensus 116 ~------~i~~~~~~ee~~~~l~~~~~ 136 (163)
. ...--.++|++++++.++..
T Consensus 153 ~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 153 LLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred ccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1 13456789999999987643
No 103
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=43.61 E-value=39 Score=26.43 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=35.2
Q ss_pred EEEccCCCCCH-HHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH-HHHHHHcCCCCccccccE-EEeCCHHHHHHHHH
Q 031219 56 FIALPGGYGTL-EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDEGFIAPAARYII-VSAQTAHELICKLE 132 (163)
Q Consensus 56 fIalPGG~GTL-dEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~-l~~~~~~gfi~~~~~~~i-~~~~~~ee~~~~l~ 132 (163)
.|+|.||.||- ..+. ...+||++=++ |- +++.+ ++.+...|+ .+.+ .+....+++.+++.
T Consensus 3 aiIla~G~g~Rl~plt--------~~~pK~llpi~--g~--piI~~~l~~l~~~Gi-----~~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 3 AVVLADSFNRRFRPLT--------KEKPRCLLPLA--NV--PLIDYTLEFLALNGV-----EEVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred EEEEcCCCcccccccc--------cCCCceeeEEC--CE--ehHHHHHHHHHHCCC-----CeEEEEeCCCHHHHHHHHh
Confidence 47889999992 2111 12355555443 53 56665 577877764 2233 33344667777776
Q ss_pred hh
Q 031219 133 EY 134 (163)
Q Consensus 133 ~~ 134 (163)
+.
T Consensus 66 ~~ 67 (217)
T cd04197 66 KS 67 (217)
T ss_pred hc
Confidence 54
No 104
>PRK13337 putative lipid kinase; Reviewed
Probab=43.43 E-value=1.2e+02 Score=25.22 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=21.8
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.|+.-||=||+.|+...+.- . .+..|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEE
Confidence 67788999999999987732 1 124577776
No 105
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=42.54 E-value=34 Score=26.99 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEe---cCCHHHHHHHHHHhcCEEEE
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA---VSGMHQRKAEMARQADAFIA 58 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~---~~~m~~Rk~~m~~~sDafIa 58 (163)
++|+.+...|..|+=|.-..-.+ .++.+ +.+. +.+|.+.-...+..+|++|.
T Consensus 34 ~lA~~~~~~Ga~V~li~g~~~~~---~p~~~-~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 34 ALAEEAARRGAEVTLIHGPSSLP---PPPGV-KVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp HHHHHHHHTT-EEEEEE-TTS-------TTE-EEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred HHHHHHHHCCCEEEEEecCcccc---ccccc-eEEEecchhhhhhhhccccCcceeEEE
Confidence 68999999999999885442111 12233 4443 34778888877888888775
No 106
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=42.47 E-value=69 Score=26.52 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=23.2
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCC-CCCcEEEEe
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN 89 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~-~~kPivlln 89 (163)
-.|+.-||=||+.|+...+.- .+. .+.|+.++-
T Consensus 54 d~vv~~GGDGTi~ev~ngl~~--~~~~~~~~lgiiP 87 (293)
T TIGR03702 54 STVIAGGGDGTLREVATALAQ--IRDDAAPALGLLP 87 (293)
T ss_pred CEEEEEcCChHHHHHHHHHHh--hCCCCCCcEEEEc
Confidence 367788999999999988732 221 245788763
No 107
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=42.40 E-value=71 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=36.0
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
.|+|||.= |.=||+|-..++++.- ..+|||||.+- .-..|...+++..
T Consensus 153 ~dGvVVtH-GTDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAH-GTDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEec-CCchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 79999987 5789999999998754 45999999863 2245556666654
No 108
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=42.36 E-value=1.1e+02 Score=26.73 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHH----HHHHHHHHhcCEEEEccCCC
Q 031219 4 VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMH----QRKAEMARQADAFIALPGGY 63 (163)
Q Consensus 4 va~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~----~Rk~~m~~~sDafIalPGG~ 63 (163)
+.+||++.|-+++.|......+.-..+...++.+.++++. +-...-+..-+++|+..|..
T Consensus 32 I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs~ 95 (358)
T PRK13278 32 ILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIPHGSF 95 (358)
T ss_pred HHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCCc
Confidence 6789999999999996654322122344456777666552 11111222237767666543
No 109
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=42.28 E-value=20 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHhcCEEEEcc-----CCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 46 KAEMARQADAFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 46 k~~m~~~sDafIalP-----GG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
-+.+++.+|++|++. =+.|+--|+-.+.++ ++||.++
T Consensus 73 d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~------~~~V~~~ 114 (116)
T PF09152_consen 73 DRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEM------GMPVFLY 114 (116)
T ss_dssp HHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHT------T-EEEEH
T ss_pred hHHHHHhcceeEEecCCCccccccHHHHHHHHHHc------CCeEEEe
Confidence 346788999999996 578888898888864 8899875
No 110
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=42.03 E-value=31 Score=29.08 Aligned_cols=61 Identities=13% Similarity=0.264 Sum_probs=36.9
Q ss_pred EEEEccCCCCC-HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH-HHHHHHcCCCCcccccc-EEEeCCHHHHHHHH
Q 031219 55 AFIALPGGYGT-LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDEGFIAPAARYI-IVSAQTAHELICKL 131 (163)
Q Consensus 55 afIalPGG~GT-LdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~-l~~~~~~gfi~~~~~~~-i~~~~~~ee~~~~l 131 (163)
-.|+|-||.|| |-.+.. ..+||++=++ | .+++.+ ++.+.+.|. .+. +.+....+++.+++
T Consensus 5 kavILAaG~GTRL~PlT~--------~~PKpLvpV~--g--kPiI~~vl~~l~~~Gi-----~~ivivv~~~~~~i~~~~ 67 (297)
T TIGR01105 5 KAVIPVAGLGMHMLPATK--------AIPKEMLPIV--D--KPMIQYIVDEIVAAGI-----KEIVLVTHASKNAVENHF 67 (297)
T ss_pred EEEEECCCCCcccCcccC--------CCCceeeEEC--C--EEHHHHHHHHHHHCCC-----CEEEEEecCChHHHHHHH
Confidence 36899999999 322221 2378877765 4 456664 577877663 233 34445556666666
Q ss_pred H
Q 031219 132 E 132 (163)
Q Consensus 132 ~ 132 (163)
.
T Consensus 68 ~ 68 (297)
T TIGR01105 68 D 68 (297)
T ss_pred h
Confidence 3
No 111
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=41.94 E-value=40 Score=28.19 Aligned_cols=40 Identities=30% Similarity=0.592 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH-HHHHHHc
Q 031219 65 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDE 107 (163)
Q Consensus 65 TLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~-l~~~~~~ 107 (163)
|++.+++.+.-.+-.....|++++ +||++++.. +++..++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm---~Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLM---TYYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEE---E-HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEE---eeccHHhccchHHHHHH
No 112
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=41.87 E-value=53 Score=24.63 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHH----HHHHHHHhcCEEEEccCC
Q 031219 4 VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQ----RKAEMARQADAFIALPGG 62 (163)
Q Consensus 4 va~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~----Rk~~m~~~sDafIalPGG 62 (163)
+.+||++.|=++++|........=....-++++++++++.+ ..+--+..-++++|=-|+
T Consensus 12 Il~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~N~I~VPhgS 74 (124)
T PF06849_consen 12 ILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREMNAIFVPHGS 74 (124)
T ss_dssp HHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHTTEEE--BTT
T ss_pred HhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHCCeEEecCCC
Confidence 67999999999999976553211112335578888887754 555555556676665554
No 113
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=41.49 E-value=94 Score=26.99 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHH
Q 031219 41 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFI 101 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l 101 (163)
-|.+-.+.+ ..=|.+|++||+.||..=+.-- +.+++. ..++|-++..+.=+.+.+.+
T Consensus 170 Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~~g--~~~~~~-~~~ViG~~v~~~~~~~~~qv 226 (323)
T COG2515 170 EIAEQAEQL-LKFDSVVVAPGSGGTHAGLLVG--LAQLGP-DVEVIGIDVSADPEKLKEQV 226 (323)
T ss_pred HHHHHHhhc-cCCCEEEEeCCCcchHHHHHHH--hhhccC-CCceEEEeecCCHHHHHHHH
Confidence 333444434 5669999999999997766543 344443 56666666655444444433
No 114
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=40.95 E-value=2.1e+02 Score=25.54 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-CCcchHHHHHH--HHHHHcCCCCccccc
Q 031219 40 SGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-DGYYNSLLSFI--DKAVDEGFIAPAARY 116 (163)
Q Consensus 40 ~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-~Gfw~~l~~~l--~~~~~~gfi~~~~~~ 116 (163)
-.+..|-..++.-|+.+|.+ ||+.|.=| +++. +||.+++-. .+.- .+++ +++.+-|+++-=..+
T Consensus 282 ~~f~~~~~~ll~gA~~vVSm-~GYNTvCe---ILs~------~k~aLivPr~~p~e---EQliRA~Rl~~LGL~dvL~pe 348 (400)
T COG4671 282 FEFRNDFESLLAGARLVVSM-GGYNTVCE---ILSF------GKPALIVPRAAPRE---EQLIRAQRLEELGLVDVLLPE 348 (400)
T ss_pred EEhhhhHHHHHHhhheeeec-ccchhhhH---HHhC------CCceEEeccCCCcH---HHHHHHHHHHhcCcceeeCcc
Confidence 34566777888889988887 78999544 4543 899998853 2222 2333 356666665443333
Q ss_pred cEEEeCCHHHHHHHHHhh
Q 031219 117 IIVSAQTAHELICKLEEY 134 (163)
Q Consensus 117 ~i~~~~~~ee~~~~l~~~ 134 (163)
.+. ++-+.+.|...
T Consensus 349 ~lt----~~~La~al~~~ 362 (400)
T COG4671 349 NLT----PQNLADALKAA 362 (400)
T ss_pred cCC----hHHHHHHHHhc
Confidence 333 55566666554
No 115
>PHA01630 putative group 1 glycosyl transferase
Probab=40.49 E-value=1.6e+02 Score=25.02 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCEEEE--ccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 031219 43 HQRKAEMARQADAFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 97 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIa--lPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l 97 (163)
++....+...||+||. ...|+|.. ++|+++. .+|+|..+..| +.++
T Consensus 200 ~~~l~~~y~~aDv~v~pS~~E~fgl~--~lEAMA~------G~PVIas~~gg-~~E~ 247 (331)
T PHA01630 200 DDDIYSLFAGCDILFYPVRGGAFEIP--VIEALAL------GLDVVVTEKGA-WSEW 247 (331)
T ss_pred HHHHHHHHHhCCEEEECCccccCChH--HHHHHHc------CCCEEEeCCCC-chhh
Confidence 4566678899999986 35777764 7888864 89999988754 5443
No 116
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=40.10 E-value=71 Score=25.14 Aligned_cols=51 Identities=25% Similarity=0.448 Sum_probs=30.5
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchH-HHHHHHHHHHcCC
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-LLSFIDKAVDEGF 109 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~-l~~~l~~~~~~gf 109 (163)
-++.|| +|+=-+|.||. +|++.+ .||.+++-.+..-|. =.++.+++.++|+
T Consensus 77 ~I~~Ad-lVIsHAGaGS~---letL~l------~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 77 DIRSAD-LVISHAGAGSC---LETLRL------GKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHhhcc-EEEecCCcchH---HHHHHc------CCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 344455 45567889995 555544 899888744433332 3344467777764
No 117
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.08 E-value=1.3e+02 Score=23.89 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+-....+..||++|.-. .|+|. =++|+++. ++|++..+..+. ..++ . +.....+.-.
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~--~~lEa~a~------g~PvI~~~~~~~-~~~i-------~-----~~~~g~~~~~ 316 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGL--VVLEAMAS------GLPVVAPDAGGP-ADIV-------T-----DGENGLLVEP 316 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCc--HHHHHHHc------CCCEEEcCCCCc-hhhh-------c-----CCcceEEcCC
Confidence 33446788899977432 23343 36677754 899998876532 2221 1 1123344445
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
++.+++.+.|.+..
T Consensus 317 ~~~~~l~~~i~~l~ 330 (364)
T cd03814 317 GDAEAFAAALAALL 330 (364)
T ss_pred CCHHHHHHHHHHHH
Confidence 66776777776643
No 118
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=39.80 E-value=93 Score=24.91 Aligned_cols=82 Identities=24% Similarity=0.272 Sum_probs=41.6
Q ss_pred HHHHHhCCC-eEEEEeCCCCCCCcccCCCcceEEecCCH---HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCC
Q 031219 5 SQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGM---HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI 80 (163)
Q Consensus 5 a~ga~~~GG-~viGIiP~~~~~~e~~~~~~~~li~~~~m---~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~ 80 (163)
+.+|+++|- .|.-++|+...+ .......++++..-- .+....++...|++++ .+|+|+-+.+..+..... .
T Consensus 28 ~~~a~~~G~g~vt~~~~~~~~~--~~~~~~pe~i~~~~~~~~~~~~~~~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~ 102 (254)
T cd01171 28 ALAALRAGAGLVTVATPPEAAA--VIKSYSPELMVHPLLETDIEELLELLERADAVVI-GPGLGRDEEAAEILEKAL--A 102 (254)
T ss_pred HHHHHHHccCEEEEEECHhhHH--HHHhcCceeeEecccccchHHHHhhhccCCEEEE-ecCCCCCHHHHHHHHHHH--h
Confidence 445555554 666666765422 122333455543211 1112344567788776 445888555444443322 3
Q ss_pred CCCcEEEEecCC
Q 031219 81 HDKPVGLLNVDG 92 (163)
Q Consensus 81 ~~kPivlln~~G 92 (163)
++.|+| ++.++
T Consensus 103 ~~~pvV-lDa~~ 113 (254)
T cd01171 103 KDKPLV-LDADA 113 (254)
T ss_pred cCCCEE-EEcHH
Confidence 477866 56654
No 119
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=39.69 E-value=83 Score=27.09 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=36.1
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
+..|+|||.= |.=||+|-...+++.- ...+||||+.+- .--.|...++.+.
T Consensus 80 ~~~dG~VVtH-GTDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILH-GTDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEee-ccchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 4579999987 4789999999988643 224899999753 2245666666554
No 120
>PRK00208 thiG thiazole synthase; Reviewed
Probab=39.69 E-value=1.5e+02 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHH
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITW 75 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~ 75 (163)
.+..+.+.+..+.-|+.-||+||.++..+++.+
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel 196 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL 196 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 444667777788899999999999999999864
No 121
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.62 E-value=34 Score=34.99 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=42.8
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCcc
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPA 113 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~-~~~~gfi~~~ 113 (163)
+++++-||.+|+.=+.+..+- ..+.|++++...|--.++++++-+ ..+.|.++..
T Consensus 271 vc~v~eGg~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~ 326 (1381)
T KOG3614|consen 271 VCLVLEGGPNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDA 326 (1381)
T ss_pred EEEEecCCchHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHH
Confidence 589999999999888877753 345699999999999999998754 4555554544
No 122
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=39.61 E-value=1e+02 Score=25.55 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=40.2
Q ss_pred HHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHH
Q 031219 48 EMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 125 (163)
Q Consensus 48 ~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~e 125 (163)
.++..||++|...- |+|. =+.|+++ +.+|+|..+....-.. ++. +.....+.-..|++
T Consensus 274 ~~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~-------~v~-----~~~~G~lv~~~d~~ 333 (372)
T cd04949 274 EVYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSE-------IIE-----DGENGYLVPKGDIE 333 (372)
T ss_pred HHHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHH-------Hcc-----cCCCceEeCCCcHH
Confidence 35667888776542 4443 3666664 4899999876422222 222 22233344445888
Q ss_pred HHHHHHHhhcC
Q 031219 126 ELICKLEEYVP 136 (163)
Q Consensus 126 e~~~~l~~~~~ 136 (163)
++.+.|.....
T Consensus 334 ~la~~i~~ll~ 344 (372)
T cd04949 334 ALAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHHc
Confidence 88888877643
No 123
>PRK13054 lipid kinase; Reviewed
Probab=39.53 E-value=81 Score=26.20 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=22.4
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
-.|+.-||=||+.|+...+.-.. ..++.|+.++
T Consensus 58 d~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 58 ATVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CEEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 36778899999999998773211 1124577776
No 124
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=39.53 E-value=1.6e+02 Score=23.32 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+...-++..||++|.-. .|+|+ =++|+++. ++|+|..+.. .+..++. . . ..+.+.
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~--~~~Eama~------G~PvI~~~~~-~~~~~~~---~--~---------~~~~~~ 329 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGI--VVAEALAC------GTPVVTTDKV-PWQELIE---Y--G---------CGWVVD 329 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCc--HHHHHHhc------CCCEEEcCCC-CHHHHhh---c--C---------ceEEeC
Confidence 34555677899987644 56666 47777754 8999988754 3333332 2 2 234444
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
++++++.+.|.+..
T Consensus 330 ~~~~~~~~~i~~l~ 343 (375)
T cd03821 330 DDVDALAAALRRAL 343 (375)
T ss_pred CChHHHHHHHHHHH
Confidence 56677777776653
No 125
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=39.49 E-value=1.7e+02 Score=24.18 Aligned_cols=70 Identities=23% Similarity=0.249 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+....+...||+++..+ -|+|.. ++|+++. .+|+|..+..| ..++ +.++ ...+.+.
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~--~lEAma~------G~PvI~s~~~~-~~e~-------i~~~------~~g~~~~ 348 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIV--PLEAMYA------GKPVIACNSGG-PLET-------VVDG------ETGFLCE 348 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCch--HHHHHHc------CCCEEEECCCC-cHHH-------hccC------CceEEeC
Confidence 33356778899988643 334442 4677754 89999987643 2322 2221 2334455
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
.|++++.+.|.+..
T Consensus 349 ~~~~~~a~~i~~l~ 362 (392)
T cd03805 349 PTPEEFAEAMLKLA 362 (392)
T ss_pred CCHHHHHHHHHHHH
Confidence 67888877776643
No 126
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=39.17 E-value=58 Score=29.52 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=36.2
Q ss_pred eEEecCCHHHHHHHHHHhcC--EEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHH
Q 031219 35 EVKAVSGMHQRKAEMARQAD--AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL 98 (163)
Q Consensus 35 ~li~~~~m~~Rk~~m~~~sD--afIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~ 98 (163)
+++.+++-.+-|.+..+... -+|+..||=||+.|+..-+--++ ...-|+.++- +-|+++.
T Consensus 96 ~Ivktd~~gqak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rrr--~~~~pv~~~P--~G~~~l~ 157 (535)
T KOG4435|consen 96 DIVKTDNQGQAKALAEAVDTQEDIIYVAGGDGTIGEVVTGIFRRR--KAQLPVGFYP--GGYDNLW 157 (535)
T ss_pred EEEecCcHHHHHHHHHHhccCCCeEEEecCCCcHHHhhHHHHhcc--cccCceeecc--CccchHh
Confidence 34445555555554433332 36777899999999986653221 3356888875 4466554
No 127
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=38.94 E-value=1.2e+02 Score=23.79 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+....++..||++|... .|+|+ =+.|++.. ++|++.-+..+ ... .+.++ ....+.-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~--~~~Ea~~~------G~pvI~~~~~~-~~~-------~~~~~-----~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGL--VLLEAMAC------GLPVVATDVGG-IPE-------IITDG-----ENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCCh--HHHHHHhc------CCCEEEecCCC-hHH-------HhcCC-----cceeEECC
Confidence 45567788899887553 34554 36777754 89999876542 222 22221 12245556
Q ss_pred CCHHHHHHHHHhhcC
Q 031219 122 QTAHELICKLEEYVP 136 (163)
Q Consensus 122 ~~~ee~~~~l~~~~~ 136 (163)
+|++++.+.|.+...
T Consensus 329 ~~~~~l~~~i~~~~~ 343 (377)
T cd03798 329 GDPEALAEAILRLLA 343 (377)
T ss_pred CCHHHHHHHHHHHhc
Confidence 789998888877654
No 128
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=38.60 E-value=1.3e+02 Score=26.33 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+....++..||+||.-. .|+|. =++|+++. .+|||..+..|. .++++ +. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA~------G~PVI~s~~gg~-~eiv~-------~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMAS------GVPVVAARAGGI-PDIIP-------PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHHc------CCCEEEcCCCCc-Hhhhh-------cC--CCCCceEEeCC
Confidence 45566788899988532 34454 36677754 899998876542 32221 10 00122333445
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
+|++++.+.|.+..
T Consensus 385 ~d~~~la~~i~~ll 398 (465)
T PLN02871 385 GDVDDCVEKLETLL 398 (465)
T ss_pred CCHHHHHHHHHHHH
Confidence 68888877776643
No 129
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=38.20 E-value=34 Score=28.17 Aligned_cols=42 Identities=33% Similarity=0.375 Sum_probs=23.8
Q ss_pred HHHHHhcCEEEEccCCCCCHHHHHH--HHHHHH-cCCCCCcEEEEecCC
Q 031219 47 AEMARQADAFIALPGGYGTLEELLE--VITWAQ-LGIHDKPVGLLNVDG 92 (163)
Q Consensus 47 ~~m~~~sDafIalPGG~GTLdEl~e--~~~~~q-lg~~~kPivlln~~G 92 (163)
.-+...+|++++ |+||+.+-.. +....+ ...+++|+| ++..+
T Consensus 49 ~~~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~ 93 (263)
T PRK09355 49 EEMAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVG 93 (263)
T ss_pred HHHHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCcc
Confidence 344678899998 6666654322 222222 234578976 55544
No 130
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=38.17 E-value=44 Score=25.72 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=22.8
Q ss_pred HhcCEEEEccCC-----CCCHHHHHHHHHHHHcC-CCCCcEEEEecC
Q 031219 51 RQADAFIALPGG-----YGTLEELLEVITWAQLG-IHDKPVGLLNVD 91 (163)
Q Consensus 51 ~~sDafIalPGG-----~GTLdEl~e~~~~~qlg-~~~kPivlln~~ 91 (163)
..+|.+|+.+|| .++.......+.+...- ..+||+++++..
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 457777777775 23333222222222222 468999999763
No 131
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=37.86 E-value=2.2e+02 Score=22.98 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 031219 50 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 94 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw 94 (163)
.+...+.|+|+|| .|...+++.++-. ..--..+.+++.+-+|
T Consensus 25 ~~~~~~~lalsGG-stp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGG-RSPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCC-ccHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 3467789999999 5888999888742 3344667777776677
No 132
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=37.73 E-value=39 Score=27.27 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=10.3
Q ss_pred EEEccCCCCCHHH
Q 031219 56 FIALPGGYGTLEE 68 (163)
Q Consensus 56 fIalPGG~GTLdE 68 (163)
.|++|||.|....
T Consensus 88 alviPGG~g~~~~ 100 (217)
T PRK11780 88 ALIVPGGFGAAKN 100 (217)
T ss_pred EEEECCCCchhhh
Confidence 6789999998543
No 133
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=37.30 E-value=2.1e+02 Score=24.80 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=41.0
Q ss_pred cCEEE-EccCCCCCHHHHHHHHHHHHcCC-CCCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHH
Q 031219 53 ADAFI-ALPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 129 (163)
Q Consensus 53 sDafI-alPGG~GTLdEl~e~~~~~qlg~-~~kPivlln~~G-fw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~ 129 (163)
.|+++ .++||+.-.+++.+.+.-..-.. ++||+++. ..| -.+... +.+.+.|+ .+.+.++++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~-~~g~~~~~~~---~~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVR-LEGTNVEEGK---KILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCccHHHHH---HHHHHcCC-------CccccCCHHHHHH
Confidence 35544 46789888888887766432221 34899554 334 222222 22333332 3678899999988
Q ss_pred HHHh
Q 031219 130 KLEE 133 (163)
Q Consensus 130 ~l~~ 133 (163)
.+-+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 7654
No 134
>PRK13059 putative lipid kinase; Reviewed
Probab=37.13 E-value=1.5e+02 Score=24.57 Aligned_cols=30 Identities=33% Similarity=0.761 Sum_probs=21.9
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.|+.-||=||+.|+...+.- .+ .+.|+.++
T Consensus 59 ~vi~~GGDGTv~evv~gl~~--~~-~~~~lgvi 88 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKK--LN-IDLPIGIL 88 (295)
T ss_pred EEEEECCccHHHHHHHHHHh--cC-CCCcEEEE
Confidence 56788999999999977742 22 24678876
No 135
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=36.54 E-value=9 Score=32.11 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHh-----cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHc-CCC
Q 031219 39 VSGMHQRKAEMARQ-----ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDE-GFI 110 (163)
Q Consensus 39 ~~~m~~Rk~~m~~~-----sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~-gfi 110 (163)
..+=.+|-+-|.+. .||++.+-||+|+. ++..-+.+..+..++|+++ -|+++-.++-.+... |++
T Consensus 44 ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~-rlL~~ld~~~i~~~pK~~i------GySDiTaL~~al~~~~g~~ 114 (284)
T PF02016_consen 44 AGSDEERAEDLNEAFADPEIDAIWCARGGYGAN-RLLPYLDYDAIRKNPKIFI------GYSDITALHNALYAKTGLV 114 (284)
T ss_dssp SS-HHHHHHHHHHHHHSTTEEEEEES--SS-GG-GGGGGCHHHHHHHSG-EEE------E-GGGHHHHHHHHHHHTBE
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeeccccHH-HHHhcccccccccCCCEEE------EecchHHHHHHHHHhCCCe
Confidence 45667776655443 57899999999995 6666677777767766655 256766655555544 544
No 136
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=36.39 E-value=1.4e+02 Score=27.24 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHH-HHHHHHHHHHcCCC
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE-ELLEVITWAQLGIH 81 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLd-El~e~~~~~qlg~~ 81 (163)
.+|+-++..|.+|+.+-+......+.....+ .+.++. -+++.||.||..+|.-+.++ |.+..+
T Consensus 268 ~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~~~~M-------- 331 (476)
T PTZ00075 268 GCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEHMRRM-------- 331 (476)
T ss_pred HHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHHHhcc--------
Confidence 4566677778887776222111000001111 122333 35788999999998878775 666555
Q ss_pred CCcEEEEecCCcchH
Q 031219 82 DKPVGLLNVDGYYNS 96 (163)
Q Consensus 82 ~kPivlln~~Gfw~~ 96 (163)
++-.++.|+..+...
T Consensus 332 KpGAiLINvGr~d~E 346 (476)
T PTZ00075 332 KNNAIVGNIGHFDNE 346 (476)
T ss_pred CCCcEEEEcCCCchH
Confidence 555788888655433
No 137
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=36.18 E-value=29 Score=24.31 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe-----CCHHHHHHHHHhhcCC
Q 031219 65 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA-----QTAHELICKLEEYVPK 137 (163)
Q Consensus 65 TLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~-----~~~ee~~~~l~~~~~~ 137 (163)
|=+|+.+.+.-..- .. +..+.+.+.++..+.+.++. |.-.++|+.- ++|+.+++.+++|++.
T Consensus 11 TE~EFl~~v~~i~~---~~----~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~ 77 (85)
T PF01320_consen 11 TESEFLEFVKEIFN---AE----LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRAS 77 (85)
T ss_dssp BHHHHHHHHHHHHH---TC----SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc---CC----CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 44566666543211 11 44566888888888877653 4445666554 4799999999999754
No 138
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=35.66 E-value=1.2e+02 Score=25.82 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHhcCEEEEc---cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC
Q 031219 47 AEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123 (163)
Q Consensus 47 ~~m~~~sDafIal---PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 123 (163)
...+..||+||+- ..|+|. =++|+++. .+|||..+.. . +|.. ......+.+.+|
T Consensus 292 ~~~~~~adv~v~Ps~~~eG~~~--~~lEAma~------G~PVV~t~~~-~-------------~~i~-~~~~~g~lv~~~ 348 (397)
T TIGR03087 292 RPYLAHAAVAVAPLRIARGIQN--KVLEAMAM------AKPVVASPEA-A-------------EGID-ALPGAELLVAAD 348 (397)
T ss_pred HHHHHhCCEEEecccccCCccc--HHHHHHHc------CCCEEecCcc-c-------------cccc-ccCCcceEeCCC
Confidence 3467889998752 245553 67788865 8999986531 0 1111 111224455689
Q ss_pred HHHHHHHHHhhc
Q 031219 124 AHELICKLEEYV 135 (163)
Q Consensus 124 ~ee~~~~l~~~~ 135 (163)
++++.+.|.+..
T Consensus 349 ~~~la~ai~~ll 360 (397)
T TIGR03087 349 PADFAAAILALL 360 (397)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 139
>PRK10494 hypothetical protein; Provisional
Probab=35.15 E-value=83 Score=26.04 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=10.2
Q ss_pred hcCEEEEccCCC
Q 031219 52 QADAFIALPGGY 63 (163)
Q Consensus 52 ~sDafIalPGG~ 63 (163)
.+|++|||.||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 489999999986
No 140
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=34.98 E-value=2.4e+02 Score=24.38 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=43.4
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHH
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 127 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 127 (163)
-++-.||.+| ||-||+. .|+..+ ..|.|-+.. |.+...-. .+++.| .++.+.|++|+
T Consensus 244 ~Ll~~a~l~I---g~ggTMa--~EAA~L------GtPaIs~~~-g~~~~vd~---~L~~~G--------ll~~~~~~~ei 300 (335)
T PF04007_consen 244 DLLYYADLVI---GGGGTMA--REAALL------GTPAISCFP-GKLLAVDK---YLIEKG--------LLYHSTDPDEI 300 (335)
T ss_pred HHHHhcCEEE---eCCcHHH--HHHHHh------CCCEEEecC-CcchhHHH---HHHHCC--------CeEecCCHHHH
Confidence 3788899887 6667864 455555 889997643 33333322 355544 68889999999
Q ss_pred HHHHHhh
Q 031219 128 ICKLEEY 134 (163)
Q Consensus 128 ~~~l~~~ 134 (163)
++.+.+.
T Consensus 301 ~~~v~~~ 307 (335)
T PF04007_consen 301 VEYVRKN 307 (335)
T ss_pred HHHHHHh
Confidence 9988764
No 141
>PRK13055 putative lipid kinase; Reviewed
Probab=34.82 E-value=41 Score=28.63 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=21.3
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.| .|+.-||=||+.|+...+.- .+ ...|+.++
T Consensus 60 ~d-~vvv~GGDGTl~evvngl~~--~~-~~~~Lgii 91 (334)
T PRK13055 60 FD-LIIAAGGDGTINEVVNGIAP--LE-KRPKMAII 91 (334)
T ss_pred CC-EEEEECCCCHHHHHHHHHhh--cC-CCCcEEEE
Confidence 35 45566999999999987731 11 23567765
No 142
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=34.67 E-value=69 Score=26.03 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=53.6
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHH-----cCC-CCCcEEEEe--cCCcchH--HHHHHHHHHHcCC--CCcccc
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQ-----LGI-HDKPVGLLN--VDGYYNS--LLSFIDKAVDEGF--IAPAAR 115 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~q-----lg~-~~kPivlln--~~Gfw~~--l~~~l~~~~~~gf--i~~~~~ 115 (163)
-+.+.+|++|+.|=..+|+.-+..-++=.- +.. .++|++++- ....|+. ...-++.+.+.|+ +.+...
T Consensus 92 ~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g 171 (209)
T PLN02496 92 ELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTK 171 (209)
T ss_pred HhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcC
Confidence 456689999999999999988764333111 111 378999863 1236764 3344667777664 344322
Q ss_pred cc------EEEeCCHHHHHHHHHhhc
Q 031219 116 YI------IVSAQTAHELICKLEEYV 135 (163)
Q Consensus 116 ~~------i~~~~~~ee~~~~l~~~~ 135 (163)
.. .=-..++++++..+.++.
T Consensus 172 ~lAcg~~G~Grm~ep~~I~~~i~~~l 197 (209)
T PLN02496 172 RLACGDYGNGAMAEPSLIYSTVRLFL 197 (209)
T ss_pred cccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 21 112245888888887764
No 143
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=34.33 E-value=1.2e+02 Score=25.71 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHh------cCEEEEccCCCCCHHHHHHHHHHHHcCCCC--CcEEEEecCCcchHHHHHHHHHH-HcCC
Q 031219 39 VSGMHQRKAEMARQ------ADAFIALPGGYGTLEELLEVITWAQLGIHD--KPVGLLNVDGYYNSLLSFIDKAV-DEGF 109 (163)
Q Consensus 39 ~~~m~~Rk~~m~~~------sDafIalPGG~GTLdEl~e~~~~~qlg~~~--kPivlln~~Gfw~~l~~~l~~~~-~~gf 109 (163)
..+=.+|-+-|.+. .||++..-||+|+. ++..-+.|..+..++ .|-++++ |+++-++.-.+. ..|.
T Consensus 47 agtd~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~-rlLp~Ld~~~i~~~~k~~PK~~iG----ySDiTaL~~al~~~~g~ 121 (305)
T PRK11253 47 AGTDGERLADLNSLADLTTPNTIVLAVRGGYGAS-RLLAGIDWQGLAARQQDDPLLIVG----HSDFTAIQLALLAQANV 121 (305)
T ss_pred CCCHHHHHHHHHHHHhcCCCccEEEEecccCCHh-HhhhhCCHHHHhhhhccCCCEEEE----EcHHHHHHHHHHHhcCc
Confidence 45668888877653 57999999999984 666666666655322 1333443 677666554443 4444
Q ss_pred C
Q 031219 110 I 110 (163)
Q Consensus 110 i 110 (163)
+
T Consensus 122 ~ 122 (305)
T PRK11253 122 I 122 (305)
T ss_pred e
Confidence 3
No 144
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=34.09 E-value=1.2e+02 Score=25.30 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHH
Q 031219 6 QAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVI 73 (163)
Q Consensus 6 ~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~ 73 (163)
+-|.+.|..+|||-.. ++.++.+-.+-.+|..-++. .+.+++--+|+.|.+++....
T Consensus 165 ~~a~~~ga~iiGINnR----------dL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~l~ 221 (247)
T PRK13957 165 KLALDCGAEIIGINTR----------DLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDKFR 221 (247)
T ss_pred HHHHhCCCCEEEEeCC----------CCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHHHH
Confidence 4578899999999332 23333222233455545554 577888899999999998754
No 145
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=33.91 E-value=63 Score=21.51 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHHhh
Q 031219 94 YNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 94 w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (163)
|+.+...++.+.+.|++.. ....+.+++.-.++++.+++.
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 6778888999999999944 677888888888888888764
No 146
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=33.64 E-value=1.5e+02 Score=26.62 Aligned_cols=77 Identities=21% Similarity=0.151 Sum_probs=49.7
Q ss_pred EEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc
Q 031219 36 VKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA 113 (163)
Q Consensus 36 li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~ 113 (163)
++++..=.-||-+=...++++++-|==+|||.|.+++..+.+-.- -+||+......=-|..++-|--....|+|+..
T Consensus 311 LfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 311 LFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred ceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 333333355666667778999999999999999999998865321 35777654322234444444445556666444
No 147
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=33.52 E-value=1.8e+02 Score=24.97 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=40.4
Q ss_pred HHHHhcC-EEEEccCCCCCHHHHHHHHHHHHcCC-CCCcEEEEe---cCCcchHHHHHHHHHH---HcCCCCccccccEE
Q 031219 48 EMARQAD-AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKAV---DEGFIAPAARYIIV 119 (163)
Q Consensus 48 ~m~~~sD-afIalPGG~GTLdEl~e~~~~~qlg~-~~kPivlln---~~Gfw~~l~~~l~~~~---~~gfi~~~~~~~i~ 119 (163)
.+++.+. |+|+|-||.||= +|. .+||++=+. ..-+.+-+.+.+..+. .+.+=.......+.
T Consensus 9 ~~i~~~~va~viLaGG~GTR-----------Lg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 9 KAIAEGKVAVLLLAGGQGTR-----------LGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred HHHhcCCEEEEEECCCcccc-----------cCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 3444445 699999999992 243 478887664 2346666666555432 11110001112222
Q ss_pred Ee--CCHHHHHHHHHh
Q 031219 120 SA--QTAHELICKLEE 133 (163)
Q Consensus 120 ~~--~~~ee~~~~l~~ 133 (163)
.+ .+-++..+++++
T Consensus 78 mtS~~t~~~t~~~~~~ 93 (323)
T cd04193 78 MTSEATHEETRKFFKE 93 (323)
T ss_pred EcChhHhHHHHHHHHh
Confidence 22 346777788875
No 148
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.51 E-value=89 Score=26.16 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=23.2
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
.+| +|+.-||=||+-+... .. ...+|++.+|.
T Consensus 57 ~~d-~vi~iGGDGTlL~a~~-~~-----~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVD-FIIAIGGDGTILRIEH-KT-----KKDIPILGINM 88 (277)
T ss_pred CCC-EEEEEeCcHHHHHHHH-hc-----CCCCeEEEEeC
Confidence 355 5666699999998876 31 24789998885
No 149
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=33.46 E-value=1.7e+02 Score=22.93 Aligned_cols=45 Identities=31% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHHHH-cCCCCCcEEEEecCCcc
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYY 94 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~~q-lg~~~kPivlln~~Gfw 94 (163)
+.+...+.|+|+||- |...+++.+.-.. .+.-.+.+.+++.+-+|
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEES
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccc
Confidence 356688999999994 6678888877543 23345778888888787
No 150
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=33.29 E-value=1.2e+02 Score=25.76 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=26.1
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
+..|+||++= |.-||+|....+++.- ...+||||+.+
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~l-~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLLL-DNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE-
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHHh-cCCCCCEEEeC
Confidence 4578988875 5789999998888642 22379999975
No 151
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=33.11 E-value=77 Score=24.93 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=23.8
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 50 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
-...|++|+.|....++++..+.+. .++.|+++++.
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~-----~~~iPvV~~~~ 90 (275)
T cd06320 55 NKGYKGLLFSPISDVNLVPAVERAK-----KKGIPVVNVND 90 (275)
T ss_pred HhCCCEEEECCCChHHhHHHHHHHH-----HCCCeEEEECC
Confidence 3468999998876556666554442 34678888764
No 152
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=33.03 E-value=3.6e+02 Score=24.08 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=53.1
Q ss_pred eEEEEeCCCCCCCcccCCCcceEEec-CCHHHHHHHH--HHhcCE-EEEccCCCCCHHHHHHHHHHHHcCC--CCCcEEE
Q 031219 14 HVLGVIPKTLMPREITGDTVGEVKAV-SGMHQRKAEM--ARQADA-FIALPGGYGTLEELLEVITWAQLGI--HDKPVGL 87 (163)
Q Consensus 14 ~viGIiP~~~~~~e~~~~~~~~li~~-~~m~~Rk~~m--~~~sDa-fIalPGG~GTLdEl~e~~~~~qlg~--~~kPivl 87 (163)
+++||+|+.-............+.+. .++.+-.+.+ -...+. +|+|.-=-=|++|+.++..+..=.. ..+|+.+
T Consensus 246 Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i 325 (400)
T PF04412_consen 246 HIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWI 325 (400)
T ss_pred EEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEE
Confidence 78899998753222212223223332 2332222222 122333 7777777889999999998876544 3788888
Q ss_pred EecCCcchHHHH--HHHHHHHcC
Q 031219 88 LNVDGYYNSLLS--FIDKAVDEG 108 (163)
Q Consensus 88 ln~~Gfw~~l~~--~l~~~~~~g 108 (163)
......+..... +++.+.+.|
T Consensus 326 ~t~~~v~~~a~~~G~~~~le~~G 348 (400)
T PF04412_consen 326 TTSRAVYELAERMGYVERLEKAG 348 (400)
T ss_pred ECCHHHHHHHHhCCHHHHHHHcC
Confidence 765444444444 444444444
No 153
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=32.70 E-value=49 Score=29.33 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=32.7
Q ss_pred chH-HHHHHHHHHHcCCCCcccccc---EEEeCCHHHHHHHHHhh
Q 031219 94 YNS-LLSFIDKAVDEGFIAPAARYI---IVSAQTAHELICKLEEY 134 (163)
Q Consensus 94 w~~-l~~~l~~~~~~gfi~~~~~~~---i~~~~~~ee~~~~l~~~ 134 (163)
|.. +-.-+..|+.+|.|+++..+. -.+..+++|+.+.+++.
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 444 555678999999999996554 58999999999999863
No 154
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=32.68 E-value=1.3e+02 Score=24.62 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg-~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
.+|....++.||.+|++ ||=-.+.-+..+.+.. .+..|++++|... . -+ +...-+.+.
T Consensus 169 ~~~~~~~~~~aDl~lvi----GTSl~V~pa~~l~~~~~~~g~~~i~iN~~~--t-------------~~--d~~~~~~i~ 227 (244)
T PRK14138 169 LREAIRLSSKASLMIVM----GSSLVVYPAAELPLITVRSGGKLVIVNLGE--T-------------PL--DDIATLKYN 227 (244)
T ss_pred HHHHHHHHhcCCEEEEe----CcCCeeecHhHHHHHHHHcCCeEEEEcCCC--C-------------CC--CcceeEEEe
Confidence 56667778899999994 5543444444443332 3578999999641 0 01 112247888
Q ss_pred CCHHHHHHHHHhh
Q 031219 122 QTAHELICKLEEY 134 (163)
Q Consensus 122 ~~~ee~~~~l~~~ 134 (163)
.+..|+++.|.++
T Consensus 228 ~~~~~~l~~l~~~ 240 (244)
T PRK14138 228 MDVVEFANRVMSE 240 (244)
T ss_pred CCHHHHHHHHHHH
Confidence 8899999888764
No 155
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=32.53 E-value=58 Score=25.55 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=38.4
Q ss_pred EEccCCCCCHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHHH-HHHHHHcCCCCccccc-cEEEe-CCHHHHHHHHH
Q 031219 57 IALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSF-IDKAVDEGFIAPAARY-IIVSA-QTAHELICKLE 132 (163)
Q Consensus 57 IalPGG~GTLdEl~e~~~~~qlg-~~~kPivlln~~Gfw~~l~~~-l~~~~~~gfi~~~~~~-~i~~~-~~~ee~~~~l~ 132 (163)
|||-||.|| -+..+. ..+||++-+.. -+ +++.+ |+.+...|+ .+ .+.+. ...+.+.+++.
T Consensus 3 vIla~G~Gt--------Rl~plt~~~pK~ll~i~g--~~-pli~~~l~~l~~~g~-----~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 3 VILAGGKGT--------RLRPLTDTIPKPLLPIGG--KY-PLIDYVLENLANAGI-----KEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEESCCG--------GGTTTTTTSSGGGSEETT--EE-EHHHHHHHHHHHTTC-----SEEEEEEETTTHHHHHHHHT
T ss_pred EEECCCCCc--------cCchhhhccccccceecC--CC-cchhhhhhhhcccCC-----ceEEEEEeeccccccccccc
Confidence 788999999 122222 35899888763 23 66664 678887775 34 33333 45566667776
Q ss_pred hh
Q 031219 133 EY 134 (163)
Q Consensus 133 ~~ 134 (163)
+.
T Consensus 67 ~~ 68 (248)
T PF00483_consen 67 SG 68 (248)
T ss_dssp TS
T ss_pred cc
Confidence 54
No 156
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=32.30 E-value=2.8e+02 Score=22.57 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=38.5
Q ss_pred CCCeEEEEeCCCCCCCcccCCCcceEEecC--CHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 11 GGRHVLGVIPKTLMPREITGDTVGEVKAVS--GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 11 ~GG~viGIiP~~~~~~e~~~~~~~~li~~~--~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.-|.|.-+.|+.... .......+++... ...++-..++..+|++++ .||+|+-+.+.++..... .+.+|++ +
T Consensus 51 g~~~v~~~~~~~~~~--~i~~~~pe~~~~~~~~~~~~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pvV-l 124 (272)
T TIGR00196 51 GAGLVTVAAPENVIT--LINSVSPELIVHRLGWKVDEDEELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPVV-L 124 (272)
T ss_pred CCCeEEEEEchhhHH--HHhhcCCEEEEecchhhHHHHHhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCEE-E
Confidence 344566666664311 1223334444322 234444455677787766 666998666444443222 3578866 4
Q ss_pred ecC
Q 031219 89 NVD 91 (163)
Q Consensus 89 n~~ 91 (163)
+..
T Consensus 125 Da~ 127 (272)
T TIGR00196 125 DAD 127 (272)
T ss_pred EhH
Confidence 544
No 157
>PRK04155 chaperone protein HchA; Provisional
Probab=32.15 E-value=43 Score=28.35 Aligned_cols=35 Identities=31% Similarity=0.250 Sum_probs=21.7
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHc----CCCCCcEEEEe
Q 031219 55 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLN 89 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~ql----g~~~kPivlln 89 (163)
..|++|||.|.+..+.+--.+.++ -..+|||+.+-
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAIC 187 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLC 187 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEC
Confidence 478999999997765332222221 13578887764
No 158
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=32.10 E-value=2.8e+02 Score=23.91 Aligned_cols=88 Identities=15% Similarity=-0.005 Sum_probs=51.0
Q ss_pred CHHHHHHHHHH--hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCC-------
Q 031219 41 GMHQRKAEMAR--QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA------- 111 (163)
Q Consensus 41 ~m~~Rk~~m~~--~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~------- 111 (163)
++.+=.+.+.+ ..++++...-+.|+-+|-...+- .-...+|||+.+-. |-+.+.-.. |-..|-|-
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~r---~gHaGAi~~~~~G~~ 284 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGRR---MGHAGAIISGGKGTA 284 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCCc---ccchhhhhccCCCCH
Confidence 45555555554 45677777778888865543332 21234799999943 566531110 11111111
Q ss_pred -----ccccccEEEeCCHHHHHHHHHhh
Q 031219 112 -----PAARYIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 112 -----~~~~~~i~~~~~~ee~~~~l~~~ 134 (163)
.-...-+.++++++|+.+.+++.
T Consensus 285 ~~k~aal~qaGv~v~~~~~el~~~~~~~ 312 (317)
T PTZ00187 285 PGKIEALEAAGVRVVKSPAQLGKTMLEV 312 (317)
T ss_pred HHHHHHHHHCCCeEeCCHHHHHHHHHHH
Confidence 00234588999999999998775
No 159
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.08 E-value=1.8e+02 Score=24.21 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHc-CCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~ql-g~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
.+|....++.+|.+|+ +||=-.+.-+..+.+. ..++.|++++|.+... .+ ..-.+.+.
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~----------~~-------~~~~~~i~ 263 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTR----------AD-------PLLTLKVE 263 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCC----------CC-------cceeEEEe
Confidence 5566677888999888 6776665544433322 2357799999965210 10 11146888
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
.+..|+++.|.+..
T Consensus 264 g~~~evL~~l~~~l 277 (285)
T PRK05333 264 ASCAQALAALVARL 277 (285)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999997643
No 160
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=32.06 E-value=56 Score=27.41 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
.++|++.+|+=|++.-|+||.+...+++.| .---||+|+
T Consensus 174 l~iiie~a~VPviVDAGiG~pSdAa~aMEl------G~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 212 (262)
T ss_pred HHHHHHhCCCCEEEeCCCCChhHHHHHHhc------ccceeehhh
Confidence 467888999999999999999999999887 556677775
No 161
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=31.53 E-value=1.4e+02 Score=26.18 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=27.4
Q ss_pred CEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 54 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 54 DafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
|+||+.= |.=||+|-...+++.--. +|||||.+-
T Consensus 102 dGvVItH-GTDTmeeTA~~L~l~l~~--~kPVVlTGa 135 (351)
T COG0252 102 DGVVITH-GTDTMEETAFFLSLTLNT--PKPVVLTGA 135 (351)
T ss_pred CeEEEeC-CCchHHHHHHHHHHHhcC--CCCEEEeCC
Confidence 8888876 578999999999875433 899999863
No 162
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=31.48 E-value=2.2e+02 Score=21.27 Aligned_cols=79 Identities=24% Similarity=0.221 Sum_probs=55.2
Q ss_pred HHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCc
Q 031219 5 SQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKP 84 (163)
Q Consensus 5 a~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kP 84 (163)
.-|+.+-||+++.+-|.... +.. -.++.+=-+.|-..+|++|+=-..-|+++|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~--------~~k---~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSS--------LGK---GESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSS--------TTT---SSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECccccc--------CcC---CCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 34678899999999755421 100 23444444578888999999999999999987666 789
Q ss_pred EEEEecCCcchHHHHHHHH
Q 031219 85 VGLLNVDGYYNSLLSFIDK 103 (163)
Q Consensus 85 ivlln~~Gfw~~l~~~l~~ 103 (163)
||=... ..+=|-..++|-
T Consensus 119 VINa~~-~~~HPtQaL~Dl 136 (142)
T PF02729_consen 119 VINAGD-DHEHPTQALADL 136 (142)
T ss_dssp EEEEEE-SSBSHHHHHHHH
T ss_pred eEcCcC-CCCChHHHHHHH
Confidence 986555 466666666653
No 163
>PHA03359 UL17 tegument protein; Provisional
Probab=30.98 E-value=25 Score=33.42 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=13.6
Q ss_pred CEEEEccCCCCCHHHHHH
Q 031219 54 DAFIALPGGYGTLEELLE 71 (163)
Q Consensus 54 DafIalPGG~GTLdEl~e 71 (163)
+++||||||++----+.+
T Consensus 649 ~~~vVfPGGF~~~~~~a~ 666 (686)
T PHA03359 649 HALVVFPGGFALEADAAA 666 (686)
T ss_pred CEEEEecCcceEEeehHH
Confidence 799999999996433333
No 164
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=30.89 E-value=2e+02 Score=20.62 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=32.6
Q ss_pred CEEEEccCCCCCHHHH---HHHHHHH-HcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHH
Q 031219 54 DAFIALPGGYGTLEEL---LEVITWA-QLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 127 (163)
Q Consensus 54 DafIalPGG~GTLdEl---~e~~~~~-qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 127 (163)
|+ |++|||.+....+ -....|. +...+.|||+.+-..- . -+.+.|.+.. ...++..+++.++
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~---~------~La~aGll~~--~~gv~~~~~~~~~ 129 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS---D------LLEAAGIPLE--DPGVVTADDVKDV 129 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH---H------HHHHcCCCCC--CCcEEEecCcchH
Confidence 55 5668888875421 1122222 2235689998776531 1 2344565433 2456666666653
No 165
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=30.85 E-value=55 Score=26.45 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.0
Q ss_pred EEEccCCCCCHHH
Q 031219 56 FIALPGGYGTLEE 68 (163)
Q Consensus 56 fIalPGG~GTLdE 68 (163)
.|++|||.|..+-
T Consensus 85 alviPGG~~~~~~ 97 (213)
T cd03133 85 ALIFPGGFGAAKN 97 (213)
T ss_pred EEEECCCCchhhh
Confidence 6789999987533
No 166
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=30.77 E-value=53 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHhcCEEEEccCCCCCHHHHHHHHHH
Q 031219 46 KAEMARQADAFIALPGGYGTLEELLEVITW 75 (163)
Q Consensus 46 k~~m~~~sDafIalPGG~GTLdEl~e~~~~ 75 (163)
.+++.+.++.-|++.+|+||-+....++.+
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 456778888888888899998888888765
No 167
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.48 E-value=64 Score=25.99 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 43 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
.++....++.+|.+|+ +||--.+.-++.+.+...++.|++++|.+
T Consensus 162 ~~~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 162 IEEAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 4566677788998777 44544554445544433357899999975
No 168
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=30.28 E-value=2.3e+02 Score=24.95 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=43.6
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHH
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHEL 127 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 127 (163)
++-..+|.|-+ -|++| ++++++.|..+.||.+++ |+|.+-.. +... ..+...++.+.+.+
T Consensus 50 l~~~g~~~f~V-----A~l~E---Ai~LR~~gi~~~~IlvL~--g~~~~~~~--~~~~--------~~~l~~~v~s~~ql 109 (360)
T COG0787 50 LLDAGADGFGV-----ASLEE---AIELREAGITGAPILVLE--GFFPAEEL--ELAA--------AYNLTPVVNSLEQL 109 (360)
T ss_pred HHHcCCCEEEE-----CcHHH---HHHHHHcCCCCCCEEEEc--CcCChhhH--HHHH--------HcCCeEEECCHHHH
Confidence 33334888744 46665 567888888678999998 67776542 2222 23567778888877
Q ss_pred HHHHHhh
Q 031219 128 ICKLEEY 134 (163)
Q Consensus 128 ~~~l~~~ 134 (163)
..+....
T Consensus 110 ~~l~~~~ 116 (360)
T COG0787 110 EALKNAA 116 (360)
T ss_pred HHHHHhh
Confidence 7665543
No 169
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=30.22 E-value=1e+02 Score=23.03 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=26.1
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEE
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGL 87 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivl 87 (163)
.++-+++||+|-|...=-.-.+.+.+.|..++-+++
T Consensus 42 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~ 77 (123)
T cd01356 42 IAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVF 77 (123)
T ss_pred ccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEee
Confidence 468899999999998877766776666554444443
No 170
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=30.18 E-value=62 Score=25.84 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=34.7
Q ss_pred EEEccCCCCC-HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH-HHHHHHcCCCCccccccE-EEeCCHHHHHHHHH
Q 031219 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDEGFIAPAARYII-VSAQTAHELICKLE 132 (163)
Q Consensus 56 fIalPGG~GT-LdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~-l~~~~~~gfi~~~~~~~i-~~~~~~ee~~~~l~ 132 (163)
.|+|.||.|| |-.+. ...+||++=++ |- +++.+ ++++...|+ .+.+ .+-...+.+.+++.
T Consensus 3 avIlAaG~gtRl~plt--------~~~pK~llpi~--g~--pli~~~l~~l~~~gi-----~~v~iv~~~~~~~i~~~~~ 65 (260)
T TIGR01099 3 AVIPAAGLGTRFLPAT--------KAIPKEMLPIV--DK--PLIQYVVEEAVEAGI-----EDILIVTGRGKRAIEDHFD 65 (260)
T ss_pred EEEEcccCcccCCCcc--------cCCCceeEEEC--CE--EHHHHHHHHHHhCCC-----CEEEEEeCCcHHHHHHHhc
Confidence 5899999999 22211 12367776654 42 66665 467776654 2333 33344566666664
No 171
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.14 E-value=99 Score=24.57 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
++-+..|++|+.|......++....+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444568999999876555555543332 23568877763
No 172
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=30.04 E-value=55 Score=26.23 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=31.5
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcC----------CCCCcEEEEecCCcchHHHHHHHHH
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLG----------IHDKPVGLLNVDGYYNSLLSFIDKA 104 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg----------~~~kPivlln~~Gfw~~l~~~l~~~ 104 (163)
+-..|=+--|.---.-++.++-+...+ +..+|+|==|. |||+.|++.=+++
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQL 155 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHh
Confidence 444566666665555555555443333 13679998776 8999999854454
No 173
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=29.86 E-value=1.7e+02 Score=20.89 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=46.8
Q ss_pred HHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHH--HHHHHH--HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCC
Q 031219 8 VYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQ--RKAEMA--RQADAFIALPGGYGTLEELLEVITWAQLGIHDK 83 (163)
Q Consensus 8 a~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~--Rk~~m~--~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~k 83 (163)
|.++|--+.|.-. .. .........-+++..|..+ |+.+.- +...+-++.. ||-+|+..++ .|
T Consensus 12 A~rAGklv~G~~~--v~-~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~---~t~~eLg~a~--------Gk 77 (104)
T PRK05583 12 TKKAGKLLEGYNK--CE-EAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG---YSKEELGNAI--------GR 77 (104)
T ss_pred HHHhCCeeecHHH--HH-HHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe---cCHHHHHHHh--------CC
Confidence 5667777778511 10 1112233444566777744 444432 4445534333 6889999887 44
Q ss_pred c---EEEEecCCcchHHHHHHHH
Q 031219 84 P---VGLLNVDGYYNSLLSFIDK 103 (163)
Q Consensus 84 P---ivlln~~Gfw~~l~~~l~~ 103 (163)
| ++.+...||.+.+++.++.
T Consensus 78 ~~~~~iai~d~g~a~~l~~~~~~ 100 (104)
T PRK05583 78 DEIKILGVKDKNMAKKLLKLWNE 100 (104)
T ss_pred CCeEEEEEeChHHHHHHHHHHHh
Confidence 4 4445556799988886653
No 174
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=29.85 E-value=1.1e+02 Score=23.93 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
+..+..|++|+.|.....+++....+. ..+.|+++++.
T Consensus 56 ~~~~~vdgiIi~~~~~~~~~~~l~~~~-----~~~iPvv~~~~ 93 (272)
T cd06300 56 LIAQGVDAIIINPASPTALNPVIEEAC-----EAGIPVVSFDG 93 (272)
T ss_pred HHHcCCCEEEEeCCChhhhHHHHHHHH-----HCCCeEEEEec
Confidence 344578999999977655565544432 23668888763
No 175
>PRK05920 aromatic acid decarboxylase; Validated
Probab=29.74 E-value=90 Score=25.13 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=50.7
Q ss_pred hcCEEEEccCCCCCHHHHHHHHH--------HHHcCCCCCcEEEEecCCcchHH-HHHHHHHHHcCCC-CccccccEEEe
Q 031219 52 QADAFIALPGGYGTLEELLEVIT--------WAQLGIHDKPVGLLNVDGYYNSL-LSFIDKAVDEGFI-APAARYIIVSA 121 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~--------~~qlg~~~kPivlln~~Gfw~~l-~~~l~~~~~~gfi-~~~~~~~i~~~ 121 (163)
.+|++|+.|=..+|+.-+.--++ ...+ ..++|+++.=.+-+..+. .+-++.+.+.|.. =+.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L-~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVL-KERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHH-hcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 68999999999999987764332 0112 247899998654333332 3346677777752 22233334555
Q ss_pred CCHHHHHHHHHh
Q 031219 122 QTAHELICKLEE 133 (163)
Q Consensus 122 ~~~ee~~~~l~~ 133 (163)
++.++.++++-.
T Consensus 172 ~~~~~~~~f~~~ 183 (204)
T PRK05920 172 QTIDDLVDFVVA 183 (204)
T ss_pred CCHHHHHHHHHH
Confidence 677888888854
No 176
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=29.23 E-value=2.8e+02 Score=21.90 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCEEEEccC--CCCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 43 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPG--G~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
.+....++..||++|.... |.|+ =++|+++. .+|++..+..
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~~------g~PvI~~~~~ 311 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGL--VLLEAMAA------GLPVVAVDAP 311 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcCh--HHHHHHHc------CCcEEEeCCC
Confidence 3555677888999875432 3333 36666654 8999988764
No 177
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=29.19 E-value=2.8e+02 Score=24.87 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHhcCEEEEccCCCC-CHHHHHHHHH--------------HHHcCCCCCcEEEEecCCcchHHHHHHHHH
Q 031219 40 SGMHQRKAEMARQADAFIALPGGYG-TLEELLEVIT--------------WAQLGIHDKPVGLLNVDGYYNSLLSFIDKA 104 (163)
Q Consensus 40 ~~m~~Rk~~m~~~sDafIalPGG~G-TLdEl~e~~~--------------~~qlg~~~kPivlln~~Gfw~~l~~~l~~~ 104 (163)
+.|+.|...|.+. +-++.+||=.- .++|+.+-+. +.+--.|++||+-++..-
T Consensus 315 te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~------------ 381 (438)
T TIGR02919 315 TEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETA------------ 381 (438)
T ss_pred CcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEeccc------------
Confidence 4556666555333 66677776555 5555554332 111114688888887541
Q ss_pred HHcCCCCccccccEEEeCCHHHHHHHHHhhc
Q 031219 105 VDEGFIAPAARYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 105 ~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (163)
...-++.. +.++-.++++++++.|.+..
T Consensus 382 ~~~~~i~~---g~l~~~~~~~~m~~~i~~lL 409 (438)
T TIGR02919 382 HNRDFIAS---ENIFEHNEVDQLISKLKDLL 409 (438)
T ss_pred CCcccccC---CceecCCCHHHHHHHHHHHh
Confidence 11112222 45677788888888887753
No 178
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=29.02 E-value=33 Score=27.90 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHc----CCCCCcEEEEe
Q 031219 55 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLN 89 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~ql----g~~~kPivlln 89 (163)
..|++|||.|++..+..--.+.++ ...+|||..+-
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAIC 136 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLC 136 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 377899999998754332222221 13578887763
No 179
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=28.74 E-value=2.5e+02 Score=21.73 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=25.3
Q ss_pred HHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 48 EMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 48 ~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
.++..||++|... .|+|+ =+.|+++. ++|++..+..
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~--~~~Ea~~~------G~PvI~~~~~ 296 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPN--VLLEAMAL------GTPVVATDCP 296 (353)
T ss_pred HHHHhCCEEEeCcccCCCCc--HHHHHHHh------CCCEEEcCCC
Confidence 4677899887543 35555 46777765 8999987764
No 180
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=28.62 E-value=78 Score=27.17 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHH
Q 031219 61 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFID 102 (163)
Q Consensus 61 GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~ 102 (163)
.+.||+||+|+..+- -++.++ .||++++.|-+
T Consensus 152 ~~~~~~e~~fe~F~~--------G~~~~G--p~~dHVl~~W~ 183 (297)
T KOG1584|consen 152 PGPGTFEEFFESFCN--------GVVPYG--PWWDHVLGYWE 183 (297)
T ss_pred CCCCcHHHHHHHHhC--------CcCCcC--ChHHHHHHHHH
Confidence 467889999999963 344444 58999888777
No 181
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=28.61 E-value=1.2e+02 Score=23.80 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
++-+..|++|+.|......++....+. ..+.|+++++.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEAK-----AAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHHH-----HCCCCEEEEec
Confidence 344568999998866444444433332 23678888875
No 182
>COG1679 Predicted aconitase [General function prediction only]
Probab=28.60 E-value=4.3e+02 Score=23.68 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=60.4
Q ss_pred HHHHHHhCCC----eEEEEeCCCCCCCcccCCCcceE-EecCCHHHHHHHHHHhcC---EEEEccCCCCCHHHHHHHHHH
Q 031219 4 VSQAVYDGGR----HVLGVIPKTLMPREITGDTVGEV-KAVSGMHQRKAEMARQAD---AFIALPGGYGTLEELLEVITW 75 (163)
Q Consensus 4 va~ga~~~GG----~viGIiP~~~~~~e~~~~~~~~l-i~~~~m~~Rk~~m~~~sD---afIalPGG~GTLdEl~e~~~~ 75 (163)
+.-++-..|+ ++.||+|++- ....+...+++ |...++.+=...|- .+| .+|.+.==.=.++|+..++.+
T Consensus 235 lgAA~atsgavam~HvegvTPE~~--~~~~~d~~e~i~i~~~d~~da~~~l~-~~~~epdli~iGcPHaS~~E~~~la~~ 311 (403)
T COG1679 235 LGAAMATSGAVAMYHVEGVTPEAR--ALAFGDKAEKIEIEREDIDDAWERLN-TADGEPDLIALGCPHASLEELRRLAEL 311 (403)
T ss_pred HHHHHhhcCceeEEEecCCCcccc--cccccccCceeeeeHHHHHHHHHHhh-cCCCCCCEEEeCCCCCCHHHHHHHHHH
Confidence 3333444455 6779999985 22233444444 33455543333333 444 588887778899999999988
Q ss_pred HHcCC--CCCcEEEEecCCcchHHHHH--HHHHHHcC
Q 031219 76 AQLGI--HDKPVGLLNVDGYYNSLLSF--IDKAVDEG 108 (163)
Q Consensus 76 ~qlg~--~~kPivlln~~Gfw~~l~~~--l~~~~~~g 108 (163)
..-.. .++|+++....+-+...... ++.|.+-|
T Consensus 312 l~~r~~~~~~~~~V~~sr~v~~~a~~~G~~~~le~~g 348 (403)
T COG1679 312 LKGRKRPAGVPLYVTTSRAVYAQARKEGYLAKLEELG 348 (403)
T ss_pred HhccCCCCCCCEEEEcCHHHHHHHhhhhhHHHHHHcC
Confidence 77665 47899987654444443333 34444433
No 183
>PLN02461 Probable pyruvate kinase
Probab=28.55 E-value=1.7e+02 Score=26.94 Aligned_cols=83 Identities=11% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCEEEEccCCCCC---HHHHHHHH--HHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc----
Q 031219 43 HQRKAEMARQADAFIALPGGYGT---LEELLEVI--TWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA---- 113 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GT---LdEl~e~~--~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~---- 113 (163)
-++..-+++.||++.+--|=.|. ++|++.+= -........||+++.. ++|+.|+.... +-+
T Consensus 248 v~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvAT---------QmLeSMi~np~-PTRAEvs 317 (511)
T PLN02461 248 LDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTAT---------QMLESMIKSPR-PTRAEAT 317 (511)
T ss_pred HHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEee---------hhHHHHhhCCC-CchHHHH
Confidence 45677788999999999999997 34443221 1111134689999875 56677776531 111
Q ss_pred --------ccccEEEe------CCHHHHHHHHHhhc
Q 031219 114 --------ARYIIVSA------QTAHELICKLEEYV 135 (163)
Q Consensus 114 --------~~~~i~~~------~~~ee~~~~l~~~~ 135 (163)
-.+.+... .-|.|+++.+.+..
T Consensus 318 DVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~ 353 (511)
T PLN02461 318 DVANAVLDGTDCVMLSGETAAGAYPELAVKTMARIC 353 (511)
T ss_pred HHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHH
Confidence 12344433 34778888776643
No 184
>PTZ00378 hypothetical protein; Provisional
Probab=28.53 E-value=78 Score=29.26 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcE--EEEecCCcchHHHHHHHHHHHcCCCCcc
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPV--GLLNVDGYYNSLLSFIDKAVDEGFIAPA 113 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPi--vlln~~Gfw~~l~~~l~~~~~~gfi~~~ 113 (163)
-++-+-...+.++++=|.=+||+.|.+++..+.+-.- .+.| ++-.-.| =|..++-|--....+||+..
T Consensus 388 i~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g-~~~v~v~vShRSG-eD~~IAdLAVa~ga~~IKtG 457 (518)
T PTZ00378 388 VESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDE-GRAVTVLVQTLAG-NAATAAHLAVAMGARFLCSG 457 (518)
T ss_pred HHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcC-CcEEccccCCCcC-CccHHHHHHHHcCCCccccC
Confidence 3444455567999999999999999999998766321 2333 1222334 35555544444455666443
No 185
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=28.40 E-value=1.4e+02 Score=27.09 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHH
Q 031219 6 QAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 72 (163)
Q Consensus 6 ~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~ 72 (163)
+-|+++|..+|||--. ++.++.+-.+-..|..-++. .+.+++-=+|+.|.+++...
T Consensus 173 ~~al~~~a~iiGiNnR----------dL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~~~ 228 (454)
T PRK09427 173 ERAIALGAKVIGINNR----------NLRDLSIDLNRTRELAPLIP-ADVIVISESGIYTHAQVREL 228 (454)
T ss_pred HHHHhCCCCEEEEeCC----------CCccceECHHHHHHHHhhCC-CCcEEEEeCCCCCHHHHHHH
Confidence 4578899999999332 22233222233444444443 46666777788887777654
No 186
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.39 E-value=75 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=21.8
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.|+.-||=||+.|+...+. ..+.|+.++
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgii 94 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGII 94 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEE
Confidence 5778899999999987763 235788876
No 187
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=28.37 E-value=4.5e+02 Score=23.83 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=36.3
Q ss_pred EEecCCHHHHHHHHH-HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 031219 36 VKAVSGMHQRKAEMA-RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 108 (163)
Q Consensus 36 li~~~~m~~Rk~~m~-~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~g 108 (163)
+.+++-+.. ..+|- .++++|| -=||.||..|.. .+.+|++.+- -|+|...+ .+++.+.|
T Consensus 348 v~i~~w~Pq-~~lL~hp~v~~fI-tHGG~~s~~Eal---------~~GvP~v~iP--~~~DQ~~N-a~rv~~~G 407 (507)
T PHA03392 348 VLTQKWFPQ-RAVLKHKNVKAFV-TQGGVQSTDEAI---------DALVPMVGLP--MMGDQFYN-TNKYVELG 407 (507)
T ss_pred eEEecCCCH-HHHhcCCCCCEEE-ecCCcccHHHHH---------HcCCCEEECC--CCccHHHH-HHHHHHcC
Confidence 344444444 33443 3466665 567799987765 3689999985 35666544 55666666
No 188
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=28.35 E-value=1.7e+02 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=27.1
Q ss_pred hcCEEEEccCCCCCHHHHHHHHH-------HHHcCCCCCcEEEEe
Q 031219 52 QADAFIALPGGYGTLEELLEVIT-------WAQLGIHDKPVGLLN 89 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~-------~~qlg~~~kPivlln 89 (163)
.+|++|+.|=...|+.-+..-++ ..+....++|++++-
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P 122 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMP 122 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEE
Confidence 47999999999999988765433 222223588998863
No 189
>PRK10122 GalU regulator GalF; Provisional
Probab=28.04 E-value=71 Score=26.79 Aligned_cols=60 Identities=13% Similarity=0.270 Sum_probs=36.1
Q ss_pred EEEccCCCCC-HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH-HHHHHHcCCCCcccccc-EEEeCCHHHHHHHHH
Q 031219 56 FIALPGGYGT-LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF-IDKAVDEGFIAPAARYI-IVSAQTAHELICKLE 132 (163)
Q Consensus 56 fIalPGG~GT-LdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~-l~~~~~~gfi~~~~~~~-i~~~~~~ee~~~~l~ 132 (163)
.|++.||.|| |-.+.. ..+||++=+. | .+++.+ ++++...|. .+. +.+....+.+.+++.
T Consensus 6 avIlAaG~GtRl~PlT~--------~~PK~llpi~--g--kpiI~~~l~~l~~~Gi-----~~i~iv~~~~~~~i~~~~~ 68 (297)
T PRK10122 6 AVIPVAGLGMHMLPATK--------AIPKEMLPIV--D--KPMIQYIVDEIVAAGI-----KEIVLVTHASKNAVENHFD 68 (297)
T ss_pred EEEECCcCCcccCcccC--------CCCceeeEEC--C--EEHHHHHHHHHHHCCC-----CEEEEEcCCChHHHHHHHh
Confidence 6899999999 222211 2377776654 4 377775 477887764 223 334455666666663
No 190
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=27.94 E-value=1.3e+02 Score=23.02 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=33.7
Q ss_pred EEccCCCCC-HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-HHHHHHHcCCCCccccccEEEeCCHHHHHHHHHh
Q 031219 57 IALPGGYGT-LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-FIDKAVDEGFIAPAARYIIVSAQTAHELICKLEE 133 (163)
Q Consensus 57 IalPGG~GT-LdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~-~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~ 133 (163)
|+|-||.|| |..+ +. ..+||++=+. |-+ +++. .++.+...|+ ..-.+.+....+++.+++.+
T Consensus 2 vILAaG~gtRl~pl----t~----~~pK~llpv~--g~~-pli~~~l~~l~~~gi----~~iivv~~~~~~~i~~~~~~ 65 (200)
T cd02508 2 IILAGGEGTRLSPL----TK----KRAKPAVPFG--GRY-RLIDFPLSNMVNSGI----RNVGVLTQYKSRSLNDHLGS 65 (200)
T ss_pred EEeCCCCCcccchh----hc----CCcceeeEEC--Cee-eeHHHHHHHHHHCCC----CEEEEEeCCChHHHHHHHhC
Confidence 789999999 2221 11 2366655443 322 3443 3566766654 22234444556777777754
No 191
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=27.94 E-value=96 Score=24.54 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=24.7
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 97 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l 97 (163)
.|++|++-=+.-+++++-.+.... ..+|+|++| +-|++.
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~~----~~rpvvl~N--p~l~~~ 136 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEAA----GGRPVVLLN--PQLEDV 136 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHhc----CCCeEEEEe--cccccC
Confidence 476555544455577777766542 248999999 456643
No 192
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=27.92 E-value=2.6e+02 Score=20.80 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=36.8
Q ss_pred HHHhCCC-eEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhc--CEEEEccCCCCCHHHHHHH
Q 031219 7 AVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQA--DAFIALPGGYGTLEELLEV 72 (163)
Q Consensus 7 ga~~~GG-~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~s--DafIalPGG~GTLdEl~e~ 72 (163)
.|.+.+. .+++|.|....... . .....+..+|..++.... |.++++| .-+.+|+.+.
T Consensus 26 ~a~~~~~~~vv~~~~d~~~~~~---~----~~~i~~~~eR~~~l~~lg~VD~vi~~~--~~~~~~fi~~ 85 (144)
T cd02172 26 AARSLGDILVVSLTSDRYVNKG---P----GRPIFPEDLRAEVLAALGFVDYVVLFD--NPTALEIIDA 85 (144)
T ss_pred HHHHhCCeEEEEEeChHHhccC---C----CCCCCCHHHHHHHHHccCCccEEEECC--CCCHHHHHHH
Confidence 3444443 57899886433211 1 123457899999998874 8888888 4578888763
No 193
>PRK07283 hypothetical protein; Provisional
Probab=27.90 E-value=1.3e+02 Score=21.13 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHH--H--HHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCC
Q 031219 8 VYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKA--E--MARQADAFIALPGGYGTLEELLEVITWAQLGIHDK 83 (163)
Q Consensus 8 a~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~--~--m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~k 83 (163)
|.++|--++|--.. ..........-+++..|-.++-. + ..+...+=++-. +|-+|+..++ |. +.
T Consensus 13 A~raGklv~G~~~v---~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~---~t~~eLG~a~-----Gk-~~ 80 (98)
T PRK07283 13 AQRAGRIISGEELV---VKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTV---FSTLELSAAV-----GK-PR 80 (98)
T ss_pred HHHhCCeeEcHHHH---HHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe---CCHHHHHHHh-----CC-Cc
Confidence 56678888885111 01112234445677787755433 2 223334433332 4889999887 33 22
Q ss_pred cEEEEecCCcchHHHH
Q 031219 84 PVGLLNVDGYYNSLLS 99 (163)
Q Consensus 84 Pivlln~~Gfw~~l~~ 99 (163)
.++.+...||.+.++.
T Consensus 81 ~vvai~d~g~a~~l~~ 96 (98)
T PRK07283 81 KVLAVTDAGFSKKMRS 96 (98)
T ss_pred eEEEEeChhHHHHHHH
Confidence 2444445678887765
No 194
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=27.75 E-value=88 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 47 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 47 ~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
..++..||+|.+|.-+.=+++-.--+... ...++||.++|+.
T Consensus 241 ~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a---~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 241 MEKVKECDGFLVLGSSLMVLSGFRFIRHA---HEKKKPIAIVNIG 282 (305)
T ss_pred HHHHhccCceEEechhHHHHHHHHHHHHH---HhhcCcEEEEecC
Confidence 34678899999997776665554433321 1237999999985
No 195
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=27.55 E-value=3.1e+02 Score=21.58 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=40.6
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCH-HHHHHHH
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA-HELICKL 131 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~-ee~~~~l 131 (163)
.+++|+.+||+-.-+|-...+.- ...+|.++.+ ++.+.+ ++. .+....+.-..++ +++-+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~~------~g~vv~L~~~--~e~l~~---Rl~------~~~~RPll~~~~~~~~l~~L~ 134 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLKK------RGIVVYLDAP--FETLYE---RLQ------RDRKRPLLQTEDPREELEELL 134 (172)
T ss_pred CCeEEECCCccccCHHHHHHHHh------CCeEEEEeCC--HHHHHH---Hhc------cccCCCcccCCChHHHHHHHH
Confidence 46999999999999999888742 3377777754 333333 332 2344566666677 4444444
Q ss_pred Hh
Q 031219 132 EE 133 (163)
Q Consensus 132 ~~ 133 (163)
++
T Consensus 135 ~~ 136 (172)
T COG0703 135 EE 136 (172)
T ss_pred HH
Confidence 33
No 196
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=27.48 E-value=2.6e+02 Score=22.19 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHc-CCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeC
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 122 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~ql-g~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 122 (163)
++....++.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34455567899999864 333332 33333322 1357899999975211 11 234567888
Q ss_pred CHHHHHHHH
Q 031219 123 TAHELICKL 131 (163)
Q Consensus 123 ~~ee~~~~l 131 (163)
++.|+++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899988765
No 197
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.47 E-value=2.4e+02 Score=24.57 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=44.6
Q ss_pred HHHHHHhCCCeEEEEeC-CCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCC
Q 031219 4 VSQAVYDGGRHVLGVIP-KTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHD 82 (163)
Q Consensus 4 va~ga~~~GG~viGIiP-~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~ 82 (163)
.|+.+.+.|- +.|.| ...+... ..+. -.+.-+.+++..+.-|++.+|+||-+....++.+ .
T Consensus 210 ~a~~l~~~g~--~avmPl~~pIGsg---~gv~-------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel------G 271 (326)
T PRK11840 210 AAKRLEDAGA--VAVMPLGAPIGSG---LGIQ-------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL------G 271 (326)
T ss_pred HHHHHHhcCC--EEEeeccccccCC---CCCC-------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc------C
Confidence 4555666655 66777 5544311 1221 2344456667789999999999999999999876 3
Q ss_pred CcEEEEec
Q 031219 83 KPVGLLNV 90 (163)
Q Consensus 83 kPivlln~ 90 (163)
---+++|.
T Consensus 272 adgVL~nS 279 (326)
T PRK11840 272 CDGVLMNT 279 (326)
T ss_pred CCEEEEcc
Confidence 44555654
No 198
>PRK10307 putative glycosyl transferase; Provisional
Probab=27.38 E-value=3.8e+02 Score=22.66 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCEEEEc--cCCCC--CHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccE
Q 031219 43 HQRKAEMARQADAFIAL--PGGYG--TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 118 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIal--PGG~G--TLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i 118 (163)
+++...++..||++|+. .++.| ...-++|+++ ..+||+..+..|. .+.+.++ .. ..+
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama------~G~PVi~s~~~g~--~~~~~i~---~~--------G~~ 354 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLA------SGRNVVATAEPGT--ELGQLVE---GI--------GVC 354 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHH------cCCCEEEEeCCCc--hHHHHHh---CC--------cEE
Confidence 34445566777776542 12211 1223344443 3899998765442 1222111 12 233
Q ss_pred EEeCCHHHHHHHHHhh
Q 031219 119 VSAQTAHELICKLEEY 134 (163)
Q Consensus 119 ~~~~~~ee~~~~l~~~ 134 (163)
.-.+|++++.+.|.+.
T Consensus 355 ~~~~d~~~la~~i~~l 370 (412)
T PRK10307 355 VEPESVEALVAAIAAL 370 (412)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 3356788777777654
No 199
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=27.21 E-value=1.1e+02 Score=23.70 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=19.8
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
+..|++|++||- |.-++.-....+.+.-..++|+.-.
T Consensus 42 ~~~d~iIi~gGp-~~~~~~~~~~~~i~~~~~~~PiLGI 78 (190)
T PRK06895 42 ENFSHILISPGP-DVPRAYPQLFAMLERYHQHKSILGV 78 (190)
T ss_pred ccCCEEEECCCC-CChHHhhHHHHHHHHhcCCCCEEEE
Confidence 457888888765 5333333323333221247897654
No 200
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=26.79 E-value=35 Score=27.76 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=20.5
Q ss_pred EEEccCCCCCHHHHHHHHHHHHc----CCCCCcEEEEe
Q 031219 56 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLN 89 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~ql----g~~~kPivlln 89 (163)
.|++|||.|.+..+..--.+.++ -..+|||..+-
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIC 134 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVC 134 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 77899999986644422111111 13578888774
No 201
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=26.77 E-value=2.2e+02 Score=22.80 Aligned_cols=47 Identities=28% Similarity=0.271 Sum_probs=27.4
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCc--EEEEecCCcchHHHHHHHHHHHcCC
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKP--VGLLNVDGYYNSLLSFIDKAVDEGF 109 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kP--ivlln~~Gfw~~l~~~l~~~~~~gf 109 (163)
.|++.|| |+++|+++++.- . =|| -++.|.- -=+.+...++.+.+.|+
T Consensus 105 aiFIGGg-~~i~~ile~~~~-~----l~~ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWE-R----LKPGGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred EEEECCC-CCHHHHHHHHHH-H----cCcCCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 3555666 999999998853 2 234 5556642 22333344556666665
No 202
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.77 E-value=3.6e+02 Score=22.16 Aligned_cols=47 Identities=32% Similarity=0.524 Sum_probs=29.1
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchH-----HHHHHHHHHHcCC
Q 031219 59 LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-----LLSFIDKAVDEGF 109 (163)
Q Consensus 59 lPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~-----l~~~l~~~~~~gf 109 (163)
|-.|. |++.+++.+....-...+.|++++. ||++ +.+|++.+.+.|.
T Consensus 65 l~~G~-~~~~~~~~v~~ir~~~~~~plv~m~---Y~Npi~~~G~e~f~~~~~~aGv 116 (256)
T TIGR00262 65 LRAGM-TPEKCFELLKKVRQKHPNIPIGLLT---YYNLIFRKGVEEFYAKCKEVGV 116 (256)
T ss_pred HHcCC-CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHhhhhHHHHHHHHHHcCC
Confidence 33444 6677887775543222477988763 7776 3456777777663
No 203
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=26.63 E-value=3.5e+02 Score=22.09 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=22.4
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCC-CcEEEEec
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNV 90 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~-kPivlln~ 90 (163)
.| +|+.-||=||+.|+...+.- ... .|+.+++.
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ----LDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc----CCCCCcEEEEcC
Confidence 45 56678999999999977732 123 36776653
No 204
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.55 E-value=1.6e+02 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=29.7
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
.+-+..|++|+.|-....+.++++-+.- .+.|+++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 3455689999999998888888877653 36799998765
No 205
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.55 E-value=1.6e+02 Score=24.85 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=23.9
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCc-EEEE
Q 031219 50 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLL 88 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kP-ivll 88 (163)
.....-.|+.-||=||+.|+...+.- ++.| +.++
T Consensus 55 ~~~~~D~via~GGDGTv~evingl~~-----~~~~~Lgil 89 (301)
T COG1597 55 AVEGYDTVIAAGGDGTVNEVANGLAG-----TDDPPLGIL 89 (301)
T ss_pred HhcCCCEEEEecCcchHHHHHHHHhc-----CCCCceEEe
Confidence 33344477788999999999988852 4555 6665
No 206
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=26.13 E-value=1.6e+02 Score=24.60 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=28.3
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC--CcchH-----HHHHHHHHHH
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNS-----LLSFIDKAVD 106 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~--Gfw~~-----l~~~l~~~~~ 106 (163)
-+|+.-||=||+-...... ....+|++-+|.. ||+.+ +.+.++.+.+
T Consensus 57 d~ivvlGGDGtlL~~~~~~-----~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~ 110 (281)
T COG0061 57 DLIVVLGGDGTLLRAARLL-----ARLDIPVLGINLGHLGFLTDFEPDELEKALDALLE 110 (281)
T ss_pred eEEEEeCCcHHHHHHHHHh-----ccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhc
Confidence 3556667789976555333 3356899998863 55544 3444455544
No 207
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=26.09 E-value=1.3e+02 Score=26.49 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=41.7
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccc-EEEeCCHHHHHHH
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYI-IVSAQTAHELICK 130 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~-i~~~~~~ee~~~~ 130 (163)
++-+-|+|.||+|| .|+= +|+ ..+||.|=+. =|.=++.+++.++..|- .+. +.+--.++++...
T Consensus 8 ~~vkaiILvGG~GT--RLrP-LT~----t~pKPlVpfg---n~pmI~hqieal~nsGi-----~~I~la~~y~s~sl~~~ 72 (371)
T KOG1322|consen 8 QSVKAIILVGGYGT--RLRP-LTL----TRPKPLVPFG---NKPMILHQIEALINSGI-----TKIVLATQYNSESLNRH 72 (371)
T ss_pred cceeEEEEecCCCc--eeec-eec----cCCCcccccC---cchhhHHHHHHHHhCCC-----cEEEEEEecCcHHHHHH
Confidence 45678999999999 4442 222 3588888553 45566677888888773 222 2233345545555
Q ss_pred HHhh
Q 031219 131 LEEY 134 (163)
Q Consensus 131 l~~~ 134 (163)
+.+.
T Consensus 73 ~~k~ 76 (371)
T KOG1322|consen 73 LSKA 76 (371)
T ss_pred HHHH
Confidence 5443
No 208
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=26.01 E-value=1.2e+02 Score=26.78 Aligned_cols=63 Identities=30% Similarity=0.422 Sum_probs=35.6
Q ss_pred EEEEccCCCCC-HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-HHHHHHHcCCCCccccccEEEe-CCHHHHHHHH
Q 031219 55 AFIALPGGYGT-LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-FIDKAVDEGFIAPAARYIIVSA-QTAHELICKL 131 (163)
Q Consensus 55 afIalPGG~GT-LdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~-~l~~~~~~gfi~~~~~~~i~~~-~~~ee~~~~l 131 (163)
..|+|.||.|| |..+.. ..+||++=++ |-| +++. .|+.+...|+ .+.+.++ ...+.+.+++
T Consensus 5 ~AVILAaG~GtRL~PLT~--------~~PK~Llpi~--gk~-plI~~~L~~l~~~Gi-----~~vivv~~~~~~~i~~~l 68 (429)
T PRK02862 5 LAIILGGGAGTRLYPLTK--------LRAKPAVPLA--GKY-RLIDIPISNCINSGI-----NKIYVLTQFNSASLNRHI 68 (429)
T ss_pred EEEEECCCCCCcchhhhc--------CCcceeeEEC--Cee-EEeHHHHHHHHHCCC-----CEEEEEecCCHHHHHHHH
Confidence 36899999999 433321 2366655443 433 3444 3567776654 2333333 3466777777
Q ss_pred Hh
Q 031219 132 EE 133 (163)
Q Consensus 132 ~~ 133 (163)
.+
T Consensus 69 ~~ 70 (429)
T PRK02862 69 SQ 70 (429)
T ss_pred hc
Confidence 53
No 209
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=25.95 E-value=2.3e+02 Score=20.02 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHHcCCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCccccccEEEeCCHHHHHHHHHhhc
Q 031219 75 WAQLGIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 75 ~~qlg~~~kPivlln~~Gfw~~l~~~l~~-~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (163)
++.++-+=+|++.++.+|.=+.+++.++. +-...+|.-.-.. ..-++..|+.+.|+...
T Consensus 9 Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~--~~~~~~~e~a~~i~~~~ 68 (95)
T TIGR00253 9 LRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVAT--EDREDKTLIAEALVKET 68 (95)
T ss_pred HHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecC--CChhHHHHHHHHHHHHH
Confidence 34444567999999999999999999975 4444444222110 11235666777776644
No 210
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.92 E-value=3.5e+02 Score=22.50 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhcCEEEEc---cCCCCC----HHHHHHHHHHHHcCCCCCcEEE
Q 031219 40 SGMHQRKAEMARQADAFIAL---PGGYGT----LEELLEVITWAQLGIHDKPVGL 87 (163)
Q Consensus 40 ~~m~~Rk~~m~~~sDafIal---PGG~GT----LdEl~e~~~~~qlg~~~kPivl 87 (163)
.+=.+|-..+.+.|+.||=+ +|=.|. .+++.+.+...+- ..++|+++
T Consensus 154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~v 207 (263)
T CHL00200 154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIIL 207 (263)
T ss_pred CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEE
Confidence 34479999999999987765 887776 2444544443332 24789886
No 211
>PF04559 Herpes_UL17: Herpesvirus UL17 protein; InterPro: IPR007640 U64 protein is required for DNA cleavage and packaging in herpes viruses. It has been shown to associate with immature B-type capsids [], and is required for the localisation of capsids and capsid proteins to the intranuclear sites where viral DNA is cleaved and packaged []. In the virion, U64 is a component of the tegument, which is a protein layer surrounding the viral capsid [].; GO: 0006323 DNA packaging, 0019012 virion
Probab=25.67 E-value=31 Score=31.76 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=9.7
Q ss_pred CEEEEccCCCC
Q 031219 54 DAFIALPGGYG 64 (163)
Q Consensus 54 DafIalPGG~G 64 (163)
++++|||||++
T Consensus 523 ~a~lVLPGGFa 533 (540)
T PF04559_consen 523 NAWLVLPGGFA 533 (540)
T ss_pred eEEEEecCcEE
Confidence 68999999985
No 212
>PRK00861 putative lipid kinase; Reviewed
Probab=25.65 E-value=1.4e+02 Score=24.63 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=21.0
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.|+.-||=||+.|+...+.- +..|+.++
T Consensus 60 ~vv~~GGDGTl~evv~~l~~-----~~~~lgvi 87 (300)
T PRK00861 60 LIIASGGDGTLSAVAGALIG-----TDIPLGII 87 (300)
T ss_pred EEEEECChHHHHHHHHHHhc-----CCCcEEEE
Confidence 56678999999999987731 25677776
No 213
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=24.88 E-value=84 Score=25.27 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCEEEEccCCCCCHHHHHHHHH
Q 031219 44 QRKAEMARQADAFIALPGGYGTLEELLEVIT 74 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~ 74 (163)
+--+.+.+.++.-|+..||++|++++.++..
T Consensus 174 eli~~i~~~~~~pvia~GGi~s~ed~~~l~~ 204 (221)
T TIGR00734 174 ELLTKTLELSEHPVMLGGGISGVEDLELLKE 204 (221)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 3344556667788999999999999987543
No 214
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=24.78 E-value=36 Score=21.84 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.4
Q ss_pred HHhcCEEEEccCCCCCH
Q 031219 50 ARQADAFIALPGGYGTL 66 (163)
Q Consensus 50 ~~~sDafIalPGG~GTL 66 (163)
+..||+++++|.|...+
T Consensus 45 l~~an~l~~ip~~~~~~ 61 (72)
T PF03454_consen 45 LARANGLIVIPEGVEGL 61 (72)
T ss_dssp HHHBSEEEEEETT-SEE
T ss_pred HhhCCEEEEeCCCCCcc
Confidence 56799999999998654
No 215
>PRK06756 flavodoxin; Provisional
Probab=24.76 E-value=2.8e+02 Score=20.17 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHhcCEEEEccC--CCCCHHH-HHHHHHHH-HcCCCCCcEEEEecCC--cc--hH-HHHHHHHHHHcCCCCccccccEEE
Q 031219 50 ARQADAFIALPG--GYGTLEE-LLEVITWA-QLGIHDKPVGLLNVDG--YY--NS-LLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 50 ~~~sDafIalPG--G~GTLdE-l~e~~~~~-qlg~~~kPivlln~~G--fw--~~-l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
+..+|++|+--- |.|.+.. +...+... ......||++++...+ |+ .. +..+.+.+.+.|+---...-.+..
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 456787665532 3355443 44444322 2345689999997633 22 23 333334566666543333344455
Q ss_pred eCCHHH
Q 031219 121 AQTAHE 126 (163)
Q Consensus 121 ~~~~ee 126 (163)
..+.++
T Consensus 127 ~p~~~d 132 (148)
T PRK06756 127 TPEDED 132 (148)
T ss_pred CCCHHH
Confidence 555444
No 216
>PRK13057 putative lipid kinase; Reviewed
Probab=24.56 E-value=73 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=22.8
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
.| .|+.-||=||+.|+...+. ..+.|+.++-
T Consensus 51 ~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 51 VD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 45 5667899999999997773 1356888763
No 217
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.54 E-value=2.3e+02 Score=25.32 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHH-HHHHHHHHHcCCC
Q 031219 3 LVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEE-LLEVITWAQLGIH 81 (163)
Q Consensus 3 ava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdE-l~e~~~~~qlg~~ 81 (163)
.+++.++..|.+|+.+-.......+.....+ .+.++.+ .++.+|.+|...|..+.+++ .+..+
T Consensus 209 ~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~lee----al~~aDVVItaTG~~~vI~~~~~~~m-------- 272 (406)
T TIGR00936 209 GIAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTMEE----AAKIGDIFITATGNKDVIRGEHFENM-------- 272 (406)
T ss_pred HHHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHHH----HHhcCCEEEECCCCHHHHHHHHHhcC--------
Confidence 3566777788888887222111111111111 1224422 45789999999998887764 54443
Q ss_pred CCcEEEEecCCcch
Q 031219 82 DKPVGLLNVDGYYN 95 (163)
Q Consensus 82 ~kPivlln~~Gfw~ 95 (163)
++-.++.|.. .++
T Consensus 273 K~GailiN~G-~~~ 285 (406)
T TIGR00936 273 KDGAIVANIG-HFD 285 (406)
T ss_pred CCCcEEEEEC-CCC
Confidence 4446777774 444
No 218
>PHA02448 hypothetical protein
Probab=24.46 E-value=1.4e+02 Score=23.02 Aligned_cols=57 Identities=30% Similarity=0.340 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 031219 41 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 108 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~g 108 (163)
-..+|+.++-+..|++.+| ||||-.-+..+. |.. .+---| .--..+.+|++.+.+.|
T Consensus 133 avaernallhelgdacaal-----tldektvaaqfy--gky--kvtarn--akpaqlrefiddlmeng 189 (192)
T PHA02448 133 AVAERNALLHELGDACAAL-----TLDEKTVAAQFY--GKY--KVTARN--AKPAQLREFIDDLMENG 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHhh-----hcchHHHHHHhh--cce--eeeecc--CChHHHHHHHHHHHhcC
Confidence 4589999999999999887 899977665431 211 111112 23345677777766554
No 219
>PLN02327 CTP synthase
Probab=24.44 E-value=55 Score=30.49 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.+...|++ ++|||+|+-.--..+........+++|+.-.
T Consensus 359 ~L~~~DGI-vvpGGfG~~~~~G~i~ai~~are~~iP~LGI 397 (557)
T PLN02327 359 LLKGADGI-LVPGGFGDRGVEGKILAAKYARENKVPYLGI 397 (557)
T ss_pred hhccCCEE-EeCCCCCCcccccHHHHHHHHHHcCCCEEEE
Confidence 36777876 8999997754444433333333467887643
No 220
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.39 E-value=1.7e+02 Score=24.95 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=34.6
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec--CCcc-----hHHHHHHHHHHHcCC
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV--DGYY-----NSLLSFIDKAVDEGF 109 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~--~Gfw-----~~l~~~l~~~~~~gf 109 (163)
+.+|.+| .-||=||+-..+..+ ....+|++-+|. -||. +++.+.++.+.+..|
T Consensus 67 ~~~Dlvi-~iGGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKFAI-VLGGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCEEE-EEeCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 3456554 458899977655443 345889999885 3566 556667777766554
No 221
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=24.38 E-value=2.4e+02 Score=24.44 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=39.1
Q ss_pred HHHHhCCCeEEEEeCCCC--CCCccc------CCCcceEEecCCH-HHHHHHHHHhcCEEEEccCCCC--CHHHHHHHHH
Q 031219 6 QAVYDGGRHVLGVIPKTL--MPREIT------GDTVGEVKAVSGM-HQRKAEMARQADAFIALPGGYG--TLEELLEVIT 74 (163)
Q Consensus 6 ~ga~~~GG~viGIiP~~~--~~~e~~------~~~~~~li~~~~m-~~Rk~~m~~~sDafIalPGG~G--TLdEl~e~~~ 74 (163)
-++.+-||+++.+-+... ...|.. -+.+.+.++..+. +.--..+.+.|.+=|+=.|+-+ -.+-|.+++|
T Consensus 65 ~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~T 144 (336)
T PRK03515 65 VAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLT 144 (336)
T ss_pred HHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHH
Confidence 466788999999744321 111110 0122344433322 4445555566665444332211 1344555666
Q ss_pred HHHc-C---CCCCcEEEEe
Q 031219 75 WAQL-G---IHDKPVGLLN 89 (163)
Q Consensus 75 ~~ql-g---~~~kPivlln 89 (163)
+.+. | ..++.|.+++
T Consensus 145 i~e~~g~~~l~g~~ia~vG 163 (336)
T PRK03515 145 MQEHLPGKAFNEMTLAYAG 163 (336)
T ss_pred HHHHhCCCCcCCCEEEEeC
Confidence 5443 2 2345566554
No 222
>PRK11096 ansB L-asparaginase II; Provisional
Probab=24.32 E-value=1.1e+02 Score=26.68 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=34.3
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
..|+||+. -|.=||+|....+++. ++ .+||||+.+- .-..|...++++.
T Consensus 100 ~~dGiVVt-HGTDTme~tA~~Ls~~-~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~A 153 (347)
T PRK11096 100 KTDGFVIT-HGTDTMEETAYFLDLT-VK-CDKPVVLVGAMRPSTAMSADGPLNLYNA 153 (347)
T ss_pred CCCEEEEe-CCCchHHHHHHHHHHh-cc-CCCCEEEeCCCCCCCCcCCchHHHHHHH
Confidence 36777776 4689999999999885 44 4899999862 2345555555443
No 223
>PLN02204 diacylglycerol kinase
Probab=24.28 E-value=1.3e+02 Score=28.48 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=17.0
Q ss_pred cCEEEEccCCCCCHHHHHHHHHH
Q 031219 53 ADAFIALPGGYGTLEELLEVITW 75 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~ 75 (163)
-|++| .-||=||+.|++-.+..
T Consensus 219 ~D~VV-aVGGDGt~nEVlNGL~~ 240 (601)
T PLN02204 219 YDGVI-AVGGDGFFNEILNGYLL 240 (601)
T ss_pred CCEEE-EEcCccHHHHHHHHHhh
Confidence 35555 56999999999987754
No 224
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.27 E-value=2.3e+02 Score=22.10 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=21.8
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
+.-...|++|+.|+..-+ +++...+ ...++|+|+++.
T Consensus 51 l~~~~vdgii~~~~~~~~-~~~~~~~-----~~~~ipvV~i~~ 87 (269)
T cd06281 51 FEQRRMDGIIIAPGDERD-PELVDAL-----ASLDLPIVLLDR 87 (269)
T ss_pred HHHcCCCEEEEecCCCCc-HHHHHHH-----HhCCCCEEEEec
Confidence 334578999999864322 3333322 224678888763
No 225
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=24.01 E-value=3.2e+02 Score=20.67 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=28.1
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 031219 50 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 94 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw 94 (163)
-+...+.|+|+||- |..++++.++-.....--+.+.++..+-+|
T Consensus 17 ~~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~ 60 (169)
T cd00458 17 EEKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERY 60 (169)
T ss_pred HhCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECcccc
Confidence 34567888898884 777888877543221123567777776665
No 226
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.96 E-value=2e+02 Score=24.18 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=66.1
Q ss_pred hHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCC
Q 031219 2 GLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIH 81 (163)
Q Consensus 2 gava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~ 81 (163)
+.+++.|.+.|=.++.+.|..-. ..+... .=-...|-.. ..-+|.+=+-+=| =++.|+.+ ..
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~~----~~~~~~----~ia~aaRiaa-ELGADiVK~~y~~-~~f~~vv~--------a~ 191 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGKD----MVRDAR----YFSLATRIAA-EMGAQIIKTYYVE-EGFERITA--------GC 191 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCCC----cCchHH----HHHHHHHHHH-HHcCCEEecCCCH-HHHHHHHH--------cC
Confidence 46788889999999887654310 011110 0011233321 2235654333322 23333333 23
Q ss_pred CCcEEEEecCCc-chHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHHhhc
Q 031219 82 DKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 82 ~kPivlln~~Gf-w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (163)
+.||++.+...- .+++++++...++.|-..-.-...|+-.++|..+++.|....
T Consensus 192 ~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV 246 (264)
T PRK08227 192 PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV 246 (264)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence 788888874322 244677777777788766666677777889998888887754
No 227
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=23.95 E-value=40 Score=22.90 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.2
Q ss_pred ccCCCCCHHHHHHHHHHHHc
Q 031219 59 LPGGYGTLEELLEVITWAQL 78 (163)
Q Consensus 59 lPGG~GTLdEl~e~~~~~ql 78 (163)
=|+|. |++||+++.-|.++
T Consensus 21 rp~GA-Ti~ei~~atGWq~H 39 (72)
T PF11994_consen 21 RPEGA-TIAEICEATGWQPH 39 (72)
T ss_pred CCCCC-CHHHHHHhhCCchh
Confidence 36676 99999999988654
No 228
>PLN02929 NADH kinase
Probab=23.90 E-value=93 Score=26.67 Aligned_cols=34 Identities=35% Similarity=0.350 Sum_probs=22.2
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 91 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~ 91 (163)
+.+|.+| .-||=||+--.+ .++ ...+||+-+|.+
T Consensus 63 ~~~Dlvi-~lGGDGT~L~aa-----~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 63 RDVDLVV-AVGGDGTLLQAS-----HFL-DDSIPVLGVNSD 96 (301)
T ss_pred CCCCEEE-EECCcHHHHHHH-----HHc-CCCCcEEEEECC
Confidence 4456554 458899965433 333 457899999974
No 229
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=23.66 E-value=39 Score=28.55 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHhcCEEEE----ccCCCCCHHHHHHHHHHHHcCC-C-CCcEEEE------ecCCcchHHHHHHHHHHHcC
Q 031219 41 GMHQRKAEMARQADAFIA----LPGGYGTLEELLEVITWAQLGI-H-DKPVGLL------NVDGYYNSLLSFIDKAVDEG 108 (163)
Q Consensus 41 ~m~~Rk~~m~~~sDafIa----lPGG~GTLdEl~e~~~~~qlg~-~-~kPivll------n~~Gfw~~l~~~l~~~~~~g 108 (163)
++..=|.-++|.+|.||+ .||---|..|+-.++.+.+-.. . ..||+.. +++..|+.+.++.+.+.+.|
T Consensus 157 ~iQ~~KaGimEiaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg 236 (266)
T PF03308_consen 157 EIQAIKAGIMEIADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESG 236 (266)
T ss_dssp CCCTB-TTHHHH-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhhccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence 557778899999999999 6888888999888887755432 2 2455552 12336666666666777766
Q ss_pred CCCcc
Q 031219 109 FIAPA 113 (163)
Q Consensus 109 fi~~~ 113 (163)
.+..+
T Consensus 237 ~~~~r 241 (266)
T PF03308_consen 237 ELEER 241 (266)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 55443
No 230
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=23.65 E-value=3e+02 Score=22.71 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=25.9
Q ss_pred HHHHHHHhcCEEEEc--cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 031219 45 RKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 92 (163)
Q Consensus 45 Rk~~m~~~sDafIal--PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~G 92 (163)
-...++..||+||.- ..|+|.. ++|+++. .+|++..+..|
T Consensus 273 ~~~~~~~~aDv~v~ps~~e~~g~~--~lEA~a~------G~PvI~s~~~~ 314 (388)
T TIGR02149 273 ELVELLSNAEVFVCPSIYEPLGIV--NLEAMAC------GTPVVASATGG 314 (388)
T ss_pred HHHHHHHhCCEEEeCCccCCCChH--HHHHHHc------CCCEEEeCCCC
Confidence 344567788887753 2455553 4666654 89999887653
No 231
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.64 E-value=1.9e+02 Score=22.73 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
+.-...|++|+.|.....+.++...+. ..++|+++++.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 444568999998765544444433332 23668887764
No 232
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=23.61 E-value=2.5e+02 Score=20.01 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHcCC--CCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCC--HHHHHHHHHhh
Q 031219 65 TLEELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT--AHELICKLEEY 134 (163)
Q Consensus 65 TLdEl~e~~~~~qlg~--~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~--~ee~~~~l~~~ 134 (163)
+++-+-.++...|-.. .-+-+.++|...+++.++..+.. |++++-.+.+.+.++ .+++.+++...
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~~~ 147 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYIDPE 147 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCCHh
Confidence 4666665555555442 35789999987666666664444 566667788888887 77777777443
No 233
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=23.42 E-value=3.4e+02 Score=22.94 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCEEEEc--cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 43 HQRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIal--PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
++....++..||++|.- ..|+|. =+.|+++ ..+|||..+..| ..+++ .++ ..+..
T Consensus 260 ~~~~~~~l~~ad~~v~pS~~E~~g~--~~~EAma------~G~PVI~s~~gg-~~e~i-------~~~-------~~~~~ 316 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSLTEAFCI--AIVEAAS------CGLLVVSTRVGG-IPEVL-------PPD-------MILLA 316 (398)
T ss_pred HHHHHHHHHhCCEEEeCChhhccCH--HHHHHHH------cCCCEEECCCCC-chhhe-------eCC-------ceeec
Confidence 35556677888888752 345553 3556664 489999877653 33222 222 23445
Q ss_pred eCCHHHHHHHHHhhc
Q 031219 121 AQTAHELICKLEEYV 135 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (163)
..|++++.+.|.+..
T Consensus 317 ~~~~~~l~~~l~~~l 331 (398)
T cd03796 317 EPDVESIVRKLEEAI 331 (398)
T ss_pred CCCHHHHHHHHHHHH
Confidence 667888777776643
No 234
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=23.21 E-value=1.2e+02 Score=27.76 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=24.6
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHcCC-CCCcEEEEe---cCCcchHHHHHHHHH
Q 031219 55 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDKA 104 (163)
Q Consensus 55 afIalPGG~GTLdEl~e~~~~~qlg~-~~kPivlln---~~Gfw~~l~~~l~~~ 104 (163)
++|+|-||.|| ++|. .+||++=++ ..-+.+-..+.+..+
T Consensus 108 avViLAGG~GT-----------RLg~~~PK~ll~I~~~~gksL~q~~~erI~~l 150 (482)
T PTZ00339 108 AVLILAGGLGT-----------RLGSDKPKGLLECTPVKKKTLFQFHCEKVRRL 150 (482)
T ss_pred EEEEECCCCcC-----------cCCCCCCCeEeeecCCCCccHHHHHHHHHHHH
Confidence 69999999999 3353 467666542 233555555555443
No 235
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=23.14 E-value=3.3e+02 Score=23.63 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHHhc----CEEEEccC---CCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEE
Q 031219 48 EMARQA----DAFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120 (163)
Q Consensus 48 ~m~~~s----DafIalPG---G~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~ 120 (163)
.+...| |+| ++|- |+|.. ++|+++. .+|||..+..| ..+++ .+| ....+.-
T Consensus 332 ~~~~~a~~~~Dv~-v~pS~~E~fg~~--~lEAma~------G~PvV~s~~gg-~~eiv-------~~~-----~~G~lv~ 389 (439)
T TIGR02472 332 ELYRLAARSRGIF-VNPALTEPFGLT--LLEAAAC------GLPIVATDDGG-PRDII-------ANC-----RNGLLVD 389 (439)
T ss_pred HHHHHHhhcCCEE-ecccccCCcccH--HHHHHHh------CCCEEEeCCCC-cHHHh-------cCC-----CcEEEeC
Confidence 345544 555 4453 66653 6777754 89999988754 23222 221 2334445
Q ss_pred eCCHHHHHHHHHhhc
Q 031219 121 AQTAHELICKLEEYV 135 (163)
Q Consensus 121 ~~~~ee~~~~l~~~~ 135 (163)
..|++++.+.|.+..
T Consensus 390 ~~d~~~la~~i~~ll 404 (439)
T TIGR02472 390 VLDLEAIASALEDAL 404 (439)
T ss_pred CCCHHHHHHHHHHHH
Confidence 678888888776643
No 236
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=22.99 E-value=37 Score=24.99 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEccCCCCCHHHHH-H---HHHHHH-cCCCCCcEEEEec
Q 031219 56 FIALPGGYGTLEELL-E---VITWAQ-LGIHDKPVGLLNV 90 (163)
Q Consensus 56 fIalPGG~GTLdEl~-e---~~~~~q-lg~~~kPivlln~ 90 (163)
.|++|||.|..+-+. . +..+.+ ...+.|||...-.
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~ 79 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICH 79 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETT
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCC
Confidence 788999999766665 2 222222 1235889988754
No 237
>PLN02949 transferase, transferring glycosyl groups
Probab=22.95 E-value=2.9e+02 Score=24.75 Aligned_cols=73 Identities=18% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCEEEEc--cCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIal--PGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+-+..+...||++|.- .-|+|. =+.|++. ..+|++..|..|-+.+++.--.. -..|| .+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGi--vvlEAMA------~G~PVIa~~~gGp~~eIV~~~~~-g~tG~----------l~ 406 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGI--SVVEYMA------AGAVPIAHNSAGPKMDIVLDEDG-QQTGF----------LA 406 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCCh--HHHHHHH------cCCcEEEeCCCCCcceeeecCCC-Ccccc----------cC
Confidence 3344567788888753 377886 3666664 38899999987755444320000 01122 23
Q ss_pred CCHHHHHHHHHhhc
Q 031219 122 QTAHELICKLEEYV 135 (163)
Q Consensus 122 ~~~ee~~~~l~~~~ 135 (163)
+|++++.+.|.+..
T Consensus 407 ~~~~~la~ai~~ll 420 (463)
T PLN02949 407 TTVEEYADAILEVL 420 (463)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888877777654
No 238
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.91 E-value=3.7e+02 Score=20.94 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHh--cCEEEEccCCCCCHHHHHHHHHH
Q 031219 6 QAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQ--ADAFIALPGGYGTLEELLEVITW 75 (163)
Q Consensus 6 ~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~--sDafIalPGG~GTLdEl~e~~~~ 75 (163)
+.+.+.|-..+|+.+...... -.++ +....+.+. .+.-|+.-||+.|.+++.++..+
T Consensus 135 ~~~~~~g~~~i~~t~~~~~~~------------~~~~-~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 135 ERALALGAKIIGINNRDLKTF------------EVDL-NTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHHHHcCCCEEEEeCCCcccc------------CcCH-HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 345566777777764221100 1122 344444544 67888999999999999888754
No 239
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=22.70 E-value=2e+02 Score=22.80 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=33.3
Q ss_pred CCCcEEEEecCCcchH--HHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHHhh
Q 031219 81 HDKPVGLLNVDGYYNS--LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY 134 (163)
Q Consensus 81 ~~kPivlln~~Gfw~~--l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 134 (163)
.+.|+++.+.-+-.+. .++.++.+.+.|.-.---...+.-.+||+++++.+++.
T Consensus 178 ~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~ 233 (235)
T cd00958 178 CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAV 233 (235)
T ss_pred CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHH
Confidence 3689877653233332 44556667776654333445566777899988887653
No 240
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=22.67 E-value=1.6e+02 Score=23.06 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 50 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
-+..|++|+.|.-....++....+. ..+.|+++++.
T Consensus 54 ~~~vdgiii~~~~~~~~~~~~~~~~-----~~~ipvV~~~~ 89 (270)
T cd06308 54 RQGVDLLIISPNEAAPLTPVVEEAY-----RAGIPVILLDR 89 (270)
T ss_pred HhCCCEEEEecCchhhchHHHHHHH-----HCCCCEEEeCC
Confidence 3467999998755443344443332 24678888864
No 241
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=22.53 E-value=1.9e+02 Score=22.49 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
+-...|++|+.|....-.+++...+. ..+.|+|+++.
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l~-----~~~iPvv~~~~ 89 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAAN-----AAGIPLVYVNR 89 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHHH-----HCCCeEEEecC
Confidence 34578999998866433445444332 23568887763
No 242
>PTZ00066 pyruvate kinase; Provisional
Probab=22.43 E-value=1.7e+02 Score=26.97 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCEEEEccCCCCC---HHHHHHHHH--HHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 031219 43 HQRKAEMARQADAFIALPGGYGT---LEELLEVIT--WAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 108 (163)
Q Consensus 43 ~~Rk~~m~~~sDafIalPGG~GT---LdEl~e~~~--~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~g 108 (163)
-++..-+++.||++.+--|=.|. ++|+..+=. ........||+++.. ++|+.|+...
T Consensus 264 v~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvAT---------QmLeSMi~np 325 (513)
T PTZ00066 264 LINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITAT---------QMLESMIKNP 325 (513)
T ss_pred HHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEec---------hhHHHHhhCC
Confidence 45777889999999999999998 444443211 011134689999864 5566776553
No 243
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=22.22 E-value=1.9e+02 Score=25.60 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=44.5
Q ss_pred HHHHhCCC-eEEEEeCCCCCCCcccCCCcceEE-------ecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHH
Q 031219 6 QAVYDGGR-HVLGVIPKTLMPREITGDTVGEVK-------AVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 72 (163)
Q Consensus 6 ~ga~~~GG-~viGIiP~~~~~~e~~~~~~~~li-------~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~ 72 (163)
+...++|- -+.||++....+.+.+...-.+.+ +.+...++-..+++.||++|..+--+|+-+++...
T Consensus 284 ~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~~~ 358 (402)
T PRK09536 284 SRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVIGL 358 (402)
T ss_pred HHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCchhe
Confidence 33444444 466999988877654322212222 12456889999999999999988888887676654
No 244
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=22.14 E-value=94 Score=24.85 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCEEEEcc--CCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEe
Q 031219 44 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 121 (163)
Q Consensus 44 ~Rk~~m~~~sDafIalP--GG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~ 121 (163)
+....++..||+++... .|+|. =++|++.. ++|+|..+..++ ..+. . ....+...
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~--~~~Ea~a~------G~pvI~~~~~~~-~e~~-------~-------~~~~~~~~ 320 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGL--PVLEAMAC------GTPVIASNISSL-PEVA-------G-------DAALYFDP 320 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCC--CHHHHhcC------CCcEEecCCCCc-ccee-------c-------CceeeeCC
Confidence 44456677888665331 23333 25666643 899998766432 2111 1 12345566
Q ss_pred CCHHHHHHHHHhh
Q 031219 122 QTAHELICKLEEY 134 (163)
Q Consensus 122 ~~~ee~~~~l~~~ 134 (163)
+|++++.+.|.+.
T Consensus 321 ~~~~~~~~~i~~l 333 (365)
T cd03809 321 LDPEALAAAIERL 333 (365)
T ss_pred CCHHHHHHHHHHH
Confidence 7888888888774
No 245
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=21.81 E-value=1.3e+02 Score=22.98 Aligned_cols=10 Identities=30% Similarity=0.165 Sum_probs=5.6
Q ss_pred HHHHHHHhhc
Q 031219 126 ELICKLEEYV 135 (163)
Q Consensus 126 e~~~~l~~~~ 135 (163)
+.++.+.+..
T Consensus 172 ~~~~~l~~~~ 181 (199)
T PF13500_consen 172 ENLEALREKS 181 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 5566665553
No 246
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.78 E-value=2.1e+02 Score=24.15 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=31.9
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecC--CcchH-----HHHHHHHHHHcCC
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNS-----LLSFIDKAVDEGF 109 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~--Gfw~~-----l~~~l~~~~~~gf 109 (163)
.+|.+| .-||=||+-.....+ ..+.+|++-.|.. ||..+ +.+.++.+.+..|
T Consensus 63 ~~d~vi-~lGGDGT~L~aa~~~-----~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 63 QADLAI-VVGGDGNMLGAARVL-----ARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred CCCEEE-EECCcHHHHHHHHHh-----cCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc
Confidence 456554 458899987666544 2347899888852 45543 4555666555444
No 247
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.72 E-value=1.3e+02 Score=26.22 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=26.5
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
.|+||++= |.-||+|....+++.- . .+||||+.+
T Consensus 106 ~~GiVVtH-GTDTme~tA~~Lsl~l-~-~~kPVVlTG 139 (349)
T TIGR00520 106 YDGIVITH-GTDTLEETAYFLDLTV-K-SDKPVVIVG 139 (349)
T ss_pred CCEEEEeC-CcccHHHHHHHHHHHc-C-CCCCEEEEC
Confidence 47888775 5899999999888643 2 389999974
No 248
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.65 E-value=1.6e+02 Score=26.06 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=54.6
Q ss_pred HHHhcCEEEEccCCCCCHHHHHHHHHH----HHcCCCCCcEEEEec--CCcch-H-HHHHHHHHHHcCC--CCcccccc-
Q 031219 49 MARQADAFIALPGGYGTLEELLEVITW----AQLGIHDKPVGLLNV--DGYYN-S-LLSFIDKAVDEGF--IAPAARYI- 117 (163)
Q Consensus 49 m~~~sDafIalPGG~GTLdEl~e~~~~----~qlg~~~kPivlln~--~Gfw~-~-l~~~l~~~~~~gf--i~~~~~~~- 117 (163)
+...+|++|+.|=..+||.-+.--++= ...-...+|++++-. ...|. + .++-+..+.+.|+ ++|....+
T Consensus 75 l~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~a 154 (390)
T TIGR00521 75 LAKWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLA 154 (390)
T ss_pred cccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccc
Confidence 345789999999999999887643321 111112499999743 45785 2 3444667777673 34432111
Q ss_pred -----EEEeCCHHHHHHHHHhhcC
Q 031219 118 -----IVSAQTAHELICKLEEYVP 136 (163)
Q Consensus 118 -----i~~~~~~ee~~~~l~~~~~ 136 (163)
.--..++++++.++.+...
T Consensus 155 c~~~g~g~~~~~~~i~~~v~~~~~ 178 (390)
T TIGR00521 155 CGDEGKGRLAEPETIVKAAEREFS 178 (390)
T ss_pred cccccCCCCCCHHHHHHHHHHHHh
Confidence 1235679999999987643
No 249
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=21.49 E-value=5e+02 Score=21.95 Aligned_cols=98 Identities=14% Similarity=0.043 Sum_probs=51.7
Q ss_pred HHHHhCCCeEEEEeCCCC--CCCccc------CCCcceEEecCCH-HHHHHHHHHhcCEEEEccCCCC--CHHHHHHHHH
Q 031219 6 QAVYDGGRHVLGVIPKTL--MPREIT------GDTVGEVKAVSGM-HQRKAEMARQADAFIALPGGYG--TLEELLEVIT 74 (163)
Q Consensus 6 ~ga~~~GG~viGIiP~~~--~~~e~~------~~~~~~li~~~~m-~~Rk~~m~~~sDafIalPGG~G--TLdEl~e~~~ 74 (163)
.++++-||+++.+-|... ...|.. -+.+.+.+++.+. +.--..+.+.|..=|+=.|+-+ =.+-|.+++|
T Consensus 63 ~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~T 142 (304)
T PRK00779 63 VGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLT 142 (304)
T ss_pred HHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHH
Confidence 467889999999854432 111110 1222455554433 4445556677776555555422 1455667777
Q ss_pred HH-HcC-CCCCcEEEEecCCcchHHHHHHHHHH
Q 031219 75 WA-QLG-IHDKPVGLLNVDGYYNSLLSFIDKAV 105 (163)
Q Consensus 75 ~~-qlg-~~~kPivlln~~Gfw~~l~~~l~~~~ 105 (163)
+. +.| ..++.|.+++- ...-.-.++..+.
T Consensus 143 i~e~~g~l~gl~i~~vGd--~~~v~~Sl~~~l~ 173 (304)
T PRK00779 143 IYEHRGSLKGLKVAWVGD--GNNVANSLLLAAA 173 (304)
T ss_pred HHHHhCCcCCcEEEEEeC--CCccHHHHHHHHH
Confidence 64 345 34566777653 3344444444443
No 250
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=21.09 E-value=1.5e+02 Score=17.69 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=17.5
Q ss_pred EEEccCCCCCHHHH---HHHHHHH-HcCCCCCcEEEE
Q 031219 56 FIALPGGYGTLEEL---LEVITWA-QLGIHDKPVGLL 88 (163)
Q Consensus 56 fIalPGG~GTLdEl---~e~~~~~-qlg~~~kPivll 88 (163)
.|++|||..+.... ...+.+. +...+.+|++..
T Consensus 49 ~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (92)
T cd03128 49 GLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGI 85 (92)
T ss_pred EEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEE
Confidence 57778888877554 2222222 222345676654
No 251
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.06 E-value=2.5e+02 Score=22.67 Aligned_cols=49 Identities=18% Similarity=0.454 Sum_probs=31.6
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHH
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV 105 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~~Gfw~~l~~~l~~~~ 105 (163)
.+.+.++.-|...||+.|++.+-..+.+ |.. -+++++.-+ + .++++.+.
T Consensus 67 ~i~~~~~~pv~~gGGIrs~edv~~l~~~---G~~---~vivGtaa~-~--~~~l~~~~ 115 (228)
T PRK04128 67 NIIRETGLKVQVGGGLRTYESIKDAYEI---GVE---NVIIGTKAF-D--LEFLEKVT 115 (228)
T ss_pred HHHhhCCCCEEEcCCCCCHHHHHHHHHC---CCC---EEEECchhc-C--HHHHHHHH
Confidence 3445566779999999999999877753 332 245666545 4 33455544
No 252
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=21.02 E-value=62 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=17.4
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEE
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVG 86 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPiv 86 (163)
.++-+++||+|-|.-.=-.-.+.+.+.|..++-++
T Consensus 27 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aPaAiI 61 (82)
T PF01989_consen 27 IAGKILVFPSGKGSTVGSYVLYELKKNGTAPAAII 61 (82)
T ss_dssp -TTSEEEES--S--SS-TTHHHHHHHHT-S-SEEE
T ss_pred ccCeEEEecCCCCccHHHHHHHHHHHCCCCCeEEE
Confidence 46889999999998765444455555554444444
No 253
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.99 E-value=1.8e+02 Score=23.91 Aligned_cols=17 Identities=29% Similarity=0.116 Sum_probs=12.7
Q ss_pred cEEEeCCHHHHHHHHHh
Q 031219 117 IIVSAQTAHELICKLEE 133 (163)
Q Consensus 117 ~i~~~~~~ee~~~~l~~ 133 (163)
...++++++|+++++++
T Consensus 233 ~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 233 GDPVVETIEELLDWLEQ 249 (249)
T ss_pred CCcccCCHHHHHHHHhC
Confidence 44557899999988763
No 254
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=20.89 E-value=3.1e+02 Score=19.47 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=35.1
Q ss_pred HHcCCCCCcEEEEecCCcchHHHHHHHHHH-HcCCCCccccccEEEeCCHHHHHHHHHhhc
Q 031219 76 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAV-DEGFIAPAARYIIVSAQTAHELICKLEEYV 135 (163)
Q Consensus 76 ~qlg~~~kPivlln~~Gfw~~l~~~l~~~~-~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~ 135 (163)
+.++-+=+|++.++.+|.=+.+++.++... ...+|.-.-.. ..-++..|+.+.|++..
T Consensus 12 R~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~~ 70 (97)
T PRK10343 12 KGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRET 70 (97)
T ss_pred HHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHHH
Confidence 334445799999999999999999998644 33333222100 11123456667676643
No 255
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=20.74 E-value=2.2e+02 Score=23.94 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=32.5
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec--CCcch-----HHHHHHHHHHHcCC
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV--DGYYN-----SLLSFIDKAVDEGF 109 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~--~Gfw~-----~l~~~l~~~~~~gf 109 (163)
.+|.+ +.-||=||+-+.+..+. ..++|++-+|. -||.. ++.+.|+.+.+..|
T Consensus 63 ~~d~v-i~~GGDGt~l~~~~~~~-----~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 63 RADLA-VVLGGDGTMLGIGRQLA-----PYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred CCCEE-EEECCcHHHHHHHHHhc-----CCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc
Confidence 45555 45588999887776552 34789888875 23443 35556666655544
No 256
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=20.70 E-value=1.4e+02 Score=25.46 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=34.1
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 103 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~-----~Gfw~~l~~~l~~ 103 (163)
..|+|||+= |.=||+|....+++. +...+||||+.+- .--.|...++++.
T Consensus 77 ~~dG~VVtH-GTDTmeeTA~~Ls~~-l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~A 131 (323)
T smart00870 77 GYDGVVVTH-GTDTLEETAYFLSLT-LDSLDKPVVLTGAMRPATALSSDGPANLLDA 131 (323)
T ss_pred CCCEEEEec-CCccHHHHHHHHHHH-hhcCCCCEEEECCCCCCCCCCchhHHHHHHH
Confidence 358888875 578999999988763 3333899999743 2234555565554
No 257
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=20.69 E-value=1.1e+02 Score=23.76 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=14.7
Q ss_pred HHhcCEEEEccCCCCCHHHHHH
Q 031219 50 ARQADAFIALPGGYGTLEELLE 71 (163)
Q Consensus 50 ~~~sDafIalPGG~GTLdEl~e 71 (163)
....|+ |+||||.-+.+++..
T Consensus 35 ~~~~d~-lilpGg~~~~~~~~~ 55 (194)
T cd01750 35 LGDADL-IILPGSKDTIQDLAW 55 (194)
T ss_pred CCCCCE-EEECCCcchHHHHHH
Confidence 456675 679999977766543
No 258
>PRK12361 hypothetical protein; Provisional
Probab=20.65 E-value=2.1e+02 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEE
Q 031219 56 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 88 (163)
Q Consensus 56 fIalPGG~GTLdEl~e~~~~~qlg~~~kPivll 88 (163)
.|+.-||=||+.|+...+. .++.|+.++
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgii 327 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGII 327 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEe
Confidence 4666899999999998774 135677776
No 259
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.57 E-value=2.2e+02 Score=22.33 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=22.5
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
++-...|++|+.|...-..++...-+ .. +.|+|+++.
T Consensus 51 l~~~~vDgiIi~~~~~~~~~~~l~~~-----~~-~ipvV~~~~ 87 (271)
T cd06314 51 LIAEGVDGIAISPIDPKAVIPALNKA-----AA-GIKLITTDS 87 (271)
T ss_pred HHhcCCCEEEEecCChhHhHHHHHHH-----hc-CCCEEEecC
Confidence 34457899999985533233443322 23 678888864
No 260
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.53 E-value=2.2e+02 Score=22.12 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=22.1
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
+.-...|++|+.|...-...+..+.+. ..+.|+|+++.
T Consensus 53 l~~~~vdgvii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 90 (273)
T cd06310 53 AIARGPDAILLAPTDAKALVPPLKEAK-----DAGIPVVLIDS 90 (273)
T ss_pred HHHhCCCEEEEcCCChhhhHHHHHHHH-----HCCCCEEEecC
Confidence 344578999998765333334444432 23568877753
No 261
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=20.51 E-value=1.6e+02 Score=18.56 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=19.6
Q ss_pred EEEccCCCCCHHHH---HHHHHHHH-cCCCCCcEEEEe
Q 031219 56 FIALPGGYGTLEEL---LEVITWAQ-LGIHDKPVGLLN 89 (163)
Q Consensus 56 fIalPGG~GTLdEl---~e~~~~~q-lg~~~kPivlln 89 (163)
.|++|||.++..+. ...+.+.+ .+.+.+|++..-
T Consensus 49 ~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c 86 (115)
T cd01653 49 GLILPGGPGTPDDLARDEALLALLREAAAAGKPILGIC 86 (115)
T ss_pred EEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEEC
Confidence 46888888887765 33333222 223467777553
No 262
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=20.39 E-value=2.2e+02 Score=19.33 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCC--CCcEEEEecCC--cchHHHHHH-HHHHHcCCCCccccccEEEeCCHHHHHH
Q 031219 61 GGYGTLEELLEVITWAQLGIH--DKPVGLLNVDG--YYNSLLSFI-DKAVDEGFIAPAARYIIVSAQTAHELIC 129 (163)
Q Consensus 61 GG~GTLdEl~e~~~~~qlg~~--~kPivlln~~G--fw~~l~~~l-~~~~~~gfi~~~~~~~i~~~~~~ee~~~ 129 (163)
||..|-.|+.+.+.- ..+.. .+-.-+-+..+ -|..-+.|- ..+...|++.......+.+++.-.+++.
T Consensus 17 g~~~~~~ei~~~v~~-~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~rG~~~iT~~G~~~l~ 89 (92)
T PF14338_consen 17 GGSASRKEIYERVAE-RFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPKRGIWRITEKGRKALA 89 (92)
T ss_pred CCCcCHHHHHHHHHH-HhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCCCCceEECHhHHHHHh
Confidence 888999999988853 23321 11111113334 478888885 5799999998877888888877666543
No 263
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.38 E-value=1.8e+02 Score=24.53 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=30.9
Q ss_pred cCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec--CCcchH-----HHHHHHHHHHcC
Q 031219 53 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV--DGYYNS-----LLSFIDKAVDEG 108 (163)
Q Consensus 53 sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~--~Gfw~~-----l~~~l~~~~~~g 108 (163)
+| +|+.-||=||+-+.+..+. ...+||+-+|. -||... +.+.++.+.+..
T Consensus 63 ~d-~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CD-LVIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CC-EEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCC
Confidence 44 5666799999988875542 35789988875 234432 444455554433
No 264
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=20.26 E-value=1e+02 Score=15.56 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.4
Q ss_pred CCcchHHHHHHHHHHHcCC
Q 031219 91 DGYYNSLLSFIDKAVDEGF 109 (163)
Q Consensus 91 ~Gfw~~l~~~l~~~~~~gf 109 (163)
.|.|+....+++.|.+.|+
T Consensus 13 ~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 13 MGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cchHHHHHHHHHHHhHCcC
Confidence 4677777777777777653
No 265
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=20.19 E-value=1.6e+02 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=26.9
Q ss_pred hcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEe
Q 031219 52 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 89 (163)
Q Consensus 52 ~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln 89 (163)
..|+||++- |.=||+|....+++.- .. .||||+.+
T Consensus 121 ~~~G~VV~H-GTDTLe~tAffls~~~-~t-~KPIVitG 155 (368)
T KOG0503|consen 121 SYDGIVVTH-GTDTLEETAFFLSFTI-NT-LKPIVITG 155 (368)
T ss_pred ccCcEEEEc-CcchHHHHHHHHHHHH-hc-CCcEEEec
Confidence 388999987 4789999998887642 22 39999975
No 266
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=20.14 E-value=3.5e+02 Score=19.61 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=3.1
Q ss_pred EEEccCCCC
Q 031219 56 FIALPGGYG 64 (163)
Q Consensus 56 fIalPGG~G 64 (163)
.|++-||.+
T Consensus 40 ~il~SGg~~ 48 (155)
T PF02698_consen 40 RILFSGGYG 48 (155)
T ss_dssp -EEEE--SS
T ss_pred eEEECCCCC
Confidence 455555554
No 267
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.10 E-value=2.4e+02 Score=22.10 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=21.9
Q ss_pred HhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 51 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 51 ~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
...|++|+.|.....+.+..+.+. ..+.|+++++.
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~-----~~gIpvV~~d~ 93 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAK-----KAGIFVVVVDR 93 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHH-----HCCCeEEEEcC
Confidence 468999999875544555544332 23568877753
No 268
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.05 E-value=2.6e+02 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCCCCCcEEEEec
Q 031219 48 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 90 (163)
Q Consensus 48 ~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~~~kPivlln~ 90 (163)
++-...|++|+.|....+.++....+. ..+.|+|+++.
T Consensus 51 ~~~~~~dgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 88 (277)
T cd06319 51 AIDKGVSGIIISPTNSSAAVTLLKLAA-----QAKIPVVIADI 88 (277)
T ss_pred HHhcCCCEEEEcCCchhhhHHHHHHHH-----HCCCCEEEEec
Confidence 445678999987755444445444332 24679988874
Done!