BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031220
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 60
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 61 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 120
Query: 121 DPNADRINRIKGEMSQ 136
+ + D++ + ++ +
Sbjct: 121 NKSLDKVMETQAQVDE 136
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 8 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 66
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F FL +I +RF TYG +A Y MN EFS VL+ Q++++S
Sbjct: 67 IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAPPYAMNSEFSSVLAAQLKHHSS 126
Query: 121 DPNA 124
P++
Sbjct: 127 GPSS 130
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
Length = 173
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 112
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++++S+
Sbjct: 113 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172
Query: 121 D 121
+
Sbjct: 173 N 173
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
Length = 169
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
MAILF++VARG+ +LA+ + N + QIL KIP N+ ++YS Y+FH D
Sbjct: 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 102
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQME 116
+ LC+ DD R F+FL ++ +RF TYG +A Y MN EFS VL+ Q++
Sbjct: 103 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLK 158
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 38 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 97
Query: 89 KTYGRAV 95
+ +G+ V
Sbjct: 98 EQHGKKV 104
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 41/92 (44%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 96
Query: 89 KTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
+ +G+ V + EF + + + Y D
Sbjct: 97 EQHGKKVPTVSRPYSFIEFDTFIQKTKKLYID 128
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 29 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFV 88
A+Q+ K+ + + + FH G+ L + + +++ FA+LED+H F
Sbjct: 48 AKQLFRKLNEQSPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFD 107
Query: 89 KTYGRAV 95
+ +G+ V
Sbjct: 108 EQHGKKV 114
>pdb|1I0I|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamine
Mutant
pdb|1I0I|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamine
Mutant
Length = 221
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVQTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1I0L|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Asparagine
Mutant
pdb|1I0L|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Asparagine
Mutant
Length = 221
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVNTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1I14|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamic
Acid Mutant
pdb|1I14|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Glutamic
Acid Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVETALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1I13|A Chain A, Analysis Of An Invariant Aspartic Acid In Hprts-Alanine
Mutant
pdb|1I13|B Chain B, Analysis Of An Invariant Aspartic Acid In Hprts-Alanine
Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVATALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1P17|A Chain A, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P17|B Chain B, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P17|C Chain C, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P17|D Chain D, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Complexed With The Product Imp
pdb|1P18|A Chain A, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Ternary Substrates Complex
pdb|1P18|B Chain B, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, K68r Mutant, Ternary Substrates Complex
Length = 221
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|1TC1|A Chain A, A 1.4 Angstrom Crystal Structure For The Hypoxanthine
Phosphoribosyltransferase Of Trypanosoma Cruzi
pdb|1TC1|B Chain B, A 1.4 Angstrom Crystal Structure For The Hypoxanthine
Phosphoribosyltransferase Of Trypanosoma Cruzi
Length = 220
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 67 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMY 126
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 127 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 168
>pdb|1TC2|A Chain A, Ternary Substrate Complex Of The Hypoxanthine
Phosphoribosyltransferase From Trypanosoma Cruzi
pdb|1TC2|B Chain B, Ternary Substrate Complex Of The Hypoxanthine
Phosphoribosyltransferase From Trypanosoma Cruzi
pdb|1P19|A Chain A, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
pdb|1P19|B Chain B, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
pdb|1P19|C Chain C, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
pdb|1P19|D Chain D, Hypoxanthine Phosphoribosyltransferase From Trypanosoma
Cruzi, In Complex With The Product Imp
Length = 221
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 5 FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQD--------RYIFHV- 55
F++ R + +S R +LD HV +D Y++H+
Sbjct: 68 FNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMY 127
Query: 56 --KRTDGLTVLCMADDTAGRRIPFA---FLEDIHQRFVKTYG 92
+R L + + D GRR+PF+ + +I FV YG
Sbjct: 128 FTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYG 169
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 85 QRFVKTYGRAVLS---AQAYGMNDEFSRVLSQQMEYYSDDPNADR--INRIKGEMSQETR 139
++ KT G V Q YG+ DE L +++ + D + + +NRI GE++ E
Sbjct: 294 KKMSKTLGNVVDPYEVVQEYGL-DEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIG 352
Query: 140 SASESRLGVSEAQYGGETSSSR 161
+ + ++ GGE S +R
Sbjct: 353 NLYSRVVNMAHKFLGGEVSGAR 374
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 42 SHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGR 93
S S + Y+ HV R+D L + +AD R+ F LE + F K R
Sbjct: 56 SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDR 108
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYG 102
LT C+A D G RIP L V T G +VL+A A G
Sbjct: 344 LTYFCVAGDVEGARIPAYILP------VDTDGTSVLTAWAAG 379
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 76 PFAFLEDIHQRFVKTYGRAV--LSAQAYGMNDEFSRVLSQQMEYY 118
P A LE++ + V + RA+ LSA AYG+ +R+ ++ YY
Sbjct: 323 PIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSPEEAMYY 367
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 106 EFSRVLSQQMEYYSDDPNADRINRIKGEMSQ 136
EF R+ + Q E Y DPN + + R E+S+
Sbjct: 412 EFDRIDNPQFEGYKFDPNGEYVRRWLPELSR 442
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 26.6 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 88 VKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQETRSASESR 145
V+ YG VL A A MN + + + EYYS+DP + GEM+ +S+
Sbjct: 107 VREYGVDVLLAPA--MNIHRNPLCGRNFEYYSEDP------VLSGEMASSFVKGVQSQ 156
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 26.6 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 88 VKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQETRSASESR 145
V+ YG VL A A MN + + + EYYS+DP + GEM+ +S+
Sbjct: 107 VREYGVDVLLAPA--MNIHRNPLCGRNFEYYSEDP------VLSGEMASSFVKGVQSQ 156
>pdb|3NDY|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDZ|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
Length = 345
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 25 ASAIARQILDKIPGNNDSHVSYSQDRY--IFHVKRTDGLTVLCMADDTAGRRIPFAFLED 82
ASA++ I D + NNDS V S Y F +G + D + F +
Sbjct: 200 ASAMSTTINDLVIPNNDSKVIVSLHMYSPYFFAMDINGTSSWGSDYDKSSLDSEF---DA 256
Query: 83 IHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
++ +FVK GRAV+ + +N + EYY+
Sbjct: 257 VYNKFVKN-GRAVVIGEMGSINKNNTAARVTHAEYYA 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,179,810
Number of Sequences: 62578
Number of extensions: 150691
Number of successful extensions: 422
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 24
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)