Query 031220
Match_columns 163
No_of_seqs 110 out of 747
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 7.9E-52 2.7E-56 307.5 11.3 155 1-159 2-156 (189)
2 2nut_C Vesicle-trafficking pro 100.0 3.6E-44 1.2E-48 267.8 12.7 154 3-160 3-166 (196)
3 4afi_A AP-3 complex subunit de 100.0 4.4E-39 1.5E-43 235.0 16.1 119 1-120 54-172 (173)
4 3kyq_A YKT6, synaptobrevin hom 100.0 2.1E-36 7.3E-41 225.6 6.1 149 1-159 2-169 (199)
5 2vx8_A Nucleoporin-like protei 100.0 1.8E-34 6.2E-39 210.0 13.4 121 1-122 44-164 (169)
6 3bw6_A Synaptobrevin homolog Y 100.0 3.1E-29 1.1E-33 178.4 12.8 122 1-126 5-144 (144)
7 1gl2_A Endobrevin; membrane pr 99.2 5.7E-12 1.9E-16 77.3 1.2 37 120-159 4-40 (65)
8 1n7s_A Vesicle-associated memb 99.1 1.7E-11 5.8E-16 74.7 2.0 35 122-159 1-35 (63)
9 2nps_A VAMP-4, vesicle-associa 99.1 9.6E-12 3.3E-16 78.2 -0.3 37 120-159 3-39 (74)
10 1l4a_A Synaptobrevin; snare, s 99.0 4.6E-11 1.6E-15 76.2 1.7 37 120-159 10-46 (80)
11 3b5n_A Synaptobrevin homolog 1 99.0 8.5E-11 2.9E-15 71.1 1.8 32 125-159 2-33 (61)
12 1sfc_A VAMP 2, protein (synapt 99.0 1.3E-10 4.6E-15 76.4 2.0 35 122-159 27-61 (96)
13 3hd7_A Vesicle-associated memb 98.9 2.2E-10 7.6E-15 74.7 2.1 34 123-159 3-36 (91)
14 2kog_A Vesicle-associated memb 98.9 2.8E-10 9.7E-15 77.7 2.7 36 122-160 30-65 (119)
15 3zym_A Phosphatidylinositol-bi 98.6 1.5E-08 5E-13 79.9 3.5 33 123-158 278-310 (310)
16 1urq_A M-tomosyn isoform; tran 98.6 6.8E-09 2.3E-13 62.9 0.8 32 125-159 4-35 (63)
17 3fie_C Fragment of vesicle-ass 98.6 4.2E-11 1.4E-15 65.4 -8.7 33 122-157 6-38 (38)
18 2fh5_A Signal recognition part 98.1 1.1E-05 3.7E-10 58.7 8.1 109 4-115 13-134 (185)
19 2fz0_A R-snare NYV1P, V-snare 96.6 0.014 4.8E-07 39.9 7.9 60 26-85 48-114 (149)
20 2j3w_A Sedlin, trafficking pro 93.9 1 3.5E-05 30.9 11.8 75 43-119 64-140 (142)
21 3tjz_C Coatomer subunit zeta-1 93.4 0.87 3E-05 31.7 9.3 87 3-91 13-105 (153)
22 2j3t_C Trafficking protein par 92.9 1.5 5.2E-05 30.1 11.8 116 1-119 1-138 (145)
23 1w63_Q Adapter-related protein 91.6 2.4 8.4E-05 29.4 10.4 49 44-92 48-96 (158)
24 2vgl_S AP-2 complex subunit si 91.4 0.85 2.9E-05 31.1 7.1 50 43-92 47-96 (142)
25 2j3t_D Trafficking protein par 91.1 3 0.0001 30.9 10.1 89 30-121 119-212 (219)
26 1w63_M Adaptor-related protein 88.8 3.3 0.00011 33.4 9.6 91 1-92 1-96 (423)
27 3cue_A Transport protein parti 88.8 3.6 0.00012 30.4 8.9 76 42-118 118-218 (219)
28 2vgl_M AP-2 complex subunit MU 88.5 7.5 0.00026 31.4 11.6 82 10-92 11-94 (435)
29 3cue_C Transport protein parti 87.8 2.9 9.8E-05 29.2 7.6 86 30-118 52-156 (159)
30 1txp_A HnRNP C, heterogeneous 83.3 1.2 4E-05 21.7 2.5 24 129-156 3-26 (28)
31 1ccd_A Clara cell 17 KD protei 81.2 4.2 0.00014 24.8 5.3 48 109-156 21-69 (77)
32 1utr_A Uteroglobin; clara cell 66.3 4.1 0.00014 26.0 2.5 45 111-155 42-87 (96)
33 3lcn_C MRNA transport factor G 62.1 12 0.00041 18.1 3.1 23 123-145 4-26 (29)
34 4a4y_A Protein MXIG; protein b 61.7 18 0.00062 23.4 4.9 42 3-57 86-127 (146)
35 1utg_A Uteroglobin; steroid bi 58.5 11 0.00037 22.5 3.3 43 110-152 20-63 (70)
36 1l4a_A Synaptobrevin; snare, s 54.7 14 0.00047 22.5 3.4 36 125-160 22-57 (80)
37 3k4t_A Virion-associated prote 52.3 14 0.00047 23.3 3.0 34 126-159 3-39 (95)
38 2kmf_A Photosystem II 11 kDa p 46.5 51 0.0018 21.6 5.3 66 73-139 40-109 (115)
39 2y6x_A PSB27, photosystem II 1 40.9 74 0.0025 20.8 5.9 67 73-140 36-106 (113)
40 1y4m_A HERV-FRD_6P24.1 proviru 40.7 32 0.0011 19.3 3.1 21 124-144 6-26 (53)
41 1zkr_A Major allergen I polype 39.8 50 0.0017 22.8 4.6 42 110-151 21-64 (153)
42 1sfc_A VAMP 2, protein (synapt 37.9 17 0.0006 23.0 2.0 36 124-159 36-71 (96)
43 3hd7_A Vesicle-associated memb 35.3 20 0.00069 22.4 2.0 37 124-160 11-47 (91)
44 1mof_A Moloney murine leukemia 35.0 45 0.0015 18.9 3.1 21 124-144 8-28 (55)
45 2ygg_A Sodium/hydrogen exchang 32.7 37 0.0013 20.2 2.6 19 131-149 6-24 (70)
46 2kfe_A Meucin-24; alpha-helix, 31.7 36 0.0012 16.1 2.0 17 126-142 6-22 (26)
47 3r45_C Holliday junction recog 31.4 34 0.0012 20.6 2.3 19 105-123 28-46 (81)
48 3kpe_B Fusion glycoprotein F0; 31.1 60 0.0021 16.9 3.3 28 125-153 9-36 (39)
49 3lay_A Zinc resistance-associa 30.9 1.4E+02 0.0047 21.0 7.0 35 109-145 99-133 (175)
50 1uix_A RHO-associated kinase; 30.9 87 0.003 18.7 4.9 28 129-156 43-70 (71)
51 2kog_A Vesicle-associated memb 30.4 21 0.00071 23.6 1.4 37 124-160 39-75 (119)
52 2xus_A Breast cancer metastasi 29.9 25 0.00087 19.4 1.5 16 124-139 31-46 (49)
53 1s1c_X RHO-associated, coiled- 26.4 1.1E+02 0.0037 18.3 4.9 28 129-156 43-70 (71)
54 1bm4_A Protein (moloney murine 25.3 52 0.0018 16.4 2.0 18 72-89 11-28 (32)
55 1mg4_A Doublecortin, doublecor 24.7 32 0.0011 22.4 1.6 54 23-77 41-101 (113)
56 4ftx_A Protein SLM4; EGO compl 24.2 1.2E+02 0.004 21.1 4.3 43 51-93 106-159 (170)
57 1use_A VAsp, vasodilator-stimu 22.0 1E+02 0.0036 16.6 3.7 29 125-155 15-43 (45)
58 3s64_A AC-SLP-1, saposin-like 21.5 67 0.0023 19.9 2.5 23 135-157 54-76 (87)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=7.9e-52 Score=307.45 Aligned_cols=155 Identities=34% Similarity=0.558 Sum_probs=142.5
Q ss_pred CceEEEEEEeCCeeEeeeeCCCCCHHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 031220 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (163)
Q Consensus 1 M~I~Y~~Iar~~~iLae~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~af~fL 80 (163)
|||+|+|||||++|||||+..+|||..+++.+|+++|+ .++|.++++|+|.|||+.++|++|+||||++||+++||.||
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 99999999999999999999999999999999999997 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccCCCCchhhhHHHHHHHHHHhcCCchhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
++|+++|.+.|+..+.++.|++++.+|.+.|+++|++|+++++.|++.+++++|+||++||++|||+|| +|||+|+
T Consensus 81 ~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl---~Rge~l~ 156 (189)
T 4b93_A 81 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVA---QRGERLE 156 (189)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBC---TTSSBCC
T ss_pred HHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHH
Confidence 999999999999888888999998899999999999999999999999999999999999999999876 5999975
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=3.6e-44 Score=267.83 Aligned_cols=154 Identities=21% Similarity=0.382 Sum_probs=118.0
Q ss_pred eEEEEEEeC--CeeEeeeeCCC---CC----HHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCc
Q 031220 3 ILFSLVARG--SVVLAECSATA---TN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR 73 (163)
Q Consensus 3 I~Y~~Iar~--~~iLae~~~~~---~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~ 73 (163)
|+|+||||+ ++|||++++.+ |+ |..+++.++++++++.++|.+++.++|.|||+.++|++|+||||++||+
T Consensus 3 i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~ 82 (196)
T 2nut_C 3 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPK 82 (196)
T ss_dssp CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcch
Confidence 899999999 79999999743 33 8899999999999756899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhcccccc-cCCCCchhhhHHHHHHHHHHhcCCchhhHHHHHHHhHHHHHHHHHhcHHHHHhhh
Q 031220 74 RIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQETRSASESRLGVSEAQ 152 (163)
Q Consensus 74 ~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dki~~i~~~v~evk~im~~NI~kvle~l 152 (163)
++||.||++|+++|...|+..+.+ +.|+++. +|.+.|+++|++|+++++.|++.+++.+|+||++||++||++||
T Consensus 83 r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl--- 158 (196)
T 2nut_C 83 KLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVL--- 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999866544 5799996 99999999999999998999999999999999999999999876
Q ss_pred hcCCCccc
Q 031220 153 YGGETSSS 160 (163)
Q Consensus 153 ~RGe~~~~ 160 (163)
+|||+|+.
T Consensus 159 ~Rge~l~~ 166 (196)
T 2nut_C 159 QRGEALSA 166 (196)
T ss_dssp --------
T ss_pred HccchHHH
Confidence 59999763
No 3
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=234.99 Aligned_cols=119 Identities=40% Similarity=0.697 Sum_probs=115.8
Q ss_pred CceEEEEEEeCCeeEeeeeCCCCCHHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 031220 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (163)
Q Consensus 1 M~I~Y~~Iar~~~iLae~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~af~fL 80 (163)
|+|+|||||||++|||||+..+|||..+++.+|+++|+ .++|.+++.++|+|||++++|++|+||||++||+++||+||
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 99999999999999999999999999999999999997 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccCCCCchhhhHHHHHHHHHHhcC
Q 031220 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120 (163)
Q Consensus 81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~ 120 (163)
++|+++|.+.|+..|.+++|++++.+|.+.|+++|++||+
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999998888999999999999999999999986
No 4
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-36 Score=225.59 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=128.0
Q ss_pred CceEEEEEEeCC----eeEeeeeCCC----------CCHH-HHHHHHhccCCCCCCCeeEEEeCCEEEE-EEEeCCEEEE
Q 031220 1 MAILFSLVARGS----VVLAECSATA----------TNAS-AIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL 64 (163)
Q Consensus 1 M~I~Y~~Iar~~----~iLae~~~~~----------~~~~-~~~~~vl~~i~~~~~~k~~~~~~~~~~h-~l~~~~~~~~ 64 (163)
|.|++.+|.+.+ ++|+...+.+ ++|. .+++.+++++++ ++|.++++|+|.|| |+.++|++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 889999999863 6788777653 3454 555799999887 78999999999999 8999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhhcc-cccc--cCCCCchhhhHHHHHHHHHHhcCCchhhHHHHHHHhHHHHHHHH
Q 031220 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGR-AVLS--AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQETRSA 141 (163)
Q Consensus 65 ~itd~~~~~~~af~fL~~i~~~F~~~~~~-~~~~--~~~~~~~~~F~~~l~~~~~~yn~~~~~dki~~i~~~v~evk~im 141 (163)
||||++||+++||.||++|+++|.+.|+. .|.+ ..|+ .| +.|+++|.+|++++++|++.+++.+|+||++||
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~----~f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM 154 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI----HY-TALDGHLSRYQNPREADPMSKVQAELDETKIIL 154 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC----CC-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc----cc-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 4433 3344 45 678999999999888899999999999999999
Q ss_pred HhcHHHHHhhhhcCCCcc
Q 031220 142 SESRLGVSEAQYGGETSS 159 (163)
Q Consensus 142 ~~NI~kvle~l~RGe~~~ 159 (163)
++|||+|| +|||+|+
T Consensus 155 ~~NI~~vl---~RgekLd 169 (199)
T 3kyq_A 155 HNTMESLL---ERGEKLD 169 (199)
T ss_dssp ESSGGGTS---CTTCCHH
T ss_pred HHHHHHHH---HccchHH
Confidence 99999876 5999975
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=100.00 E-value=1.8e-34 Score=209.97 Aligned_cols=121 Identities=40% Similarity=0.689 Sum_probs=109.1
Q ss_pred CceEEEEEEeCCeeEeeeeCCCCCHHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 031220 1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL 80 (163)
Q Consensus 1 M~I~Y~~Iar~~~iLae~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~af~fL 80 (163)
|+|+|+|||||++|||||++.++||..+++.+++++++ .++|.+++.++|.|||+.+||++|+||||++||+++||.||
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 99999999999999999999899999999999999997 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccCCCCchhhhHHHHHHHHHHhcCCc
Q 031220 81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDP 122 (163)
Q Consensus 81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~ 122 (163)
++|+++|.+.|+..|.+++|++++.+|++.|++.|++|+++.
T Consensus 123 edI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~~ 164 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENH 164 (169)
T ss_dssp HHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCcc
Confidence 999999999998888778899998899999999999998764
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.96 E-value=3.1e-29 Score=178.40 Aligned_cols=122 Identities=19% Similarity=0.288 Sum_probs=102.5
Q ss_pred CceEEEEEEeC----CeeEeeeeCCC----------CCH-HHHHHHHhccCCCCCCCeeEEEeCCEEEEEE-EeCCEEEE
Q 031220 1 MAILFSLVARG----SVVLAECSATA----------TNA-SAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTVL 64 (163)
Q Consensus 1 M~I~Y~~Iar~----~~iLae~~~~~----------~~~-~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l-~~~~~~~~ 64 (163)
|.|+|++|+|+ .++|+++++.+ ++| ..+++++++|+++ ++|+++++++|+|||+ .++|++|+
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence 78999999999 58999999876 565 7899999999997 6899999999999999 78999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhhccc-ccc-cCCCCchhhhHHHHHHHHHHhcCCchhhH
Q 031220 65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADR 126 (163)
Q Consensus 65 ~itd~~~~~~~af~fL~~i~~~F~~~~~~~-~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dk 126 (163)
||||++||+|+||.||++|+++|.++|+.. |.+ .++++ +..| +.|++.|.+|+|++++|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHTSCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHhCchhhcCC
Confidence 999999999999999999999999999866 665 33221 2355 889999999999888775
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.16 E-value=5.7e-12 Score=77.31 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 120 DDPNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 120 ~~~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
+|++.|+|.+++.+|+||+.||++||++|+ +|||+|+
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL---~RgekLd 40 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERIL---ARGENLD 40 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHH
Confidence 456789999999999999999999999876 5999976
No 8
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.12 E-value=1.7e-11 Score=74.74 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=31.9
Q ss_pred chhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 122 PNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 122 ~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
|++|+|.+++.+|+||++||++||++|+ +|||+|+
T Consensus 1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl---~RGekLd 35 (63)
T 1n7s_A 1 GSNRRLQQTQAQVDEVVDIMRVNVDKVL---ERDQKLS 35 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHH
Confidence 4689999999999999999999999876 5999976
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.08 E-value=9.6e-12 Score=78.22 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=31.6
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 120 DDPNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 120 ~~~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
+|++.|+|.+++.+|+||++||++||++|+ +|||+|+
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL---~RgekLd 39 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVI---ERGERLD 39 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHH
Confidence 556789999999999999999999999876 5999976
No 10
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.04 E-value=4.6e-11 Score=76.16 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=33.1
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 120 DDPNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 120 ~~~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
++++.|+|.+++.+|+||++||++||++|+ +|||+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL---eRGekLd 46 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVL---ERDSKIS 46 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHH
Confidence 346789999999999999999999999876 5999976
No 11
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.01 E-value=8.5e-11 Score=71.14 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=29.6
Q ss_pred hHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 125 DRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 125 dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
|++.+++.+|+||++||++||++|+ +|||+|+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl---~RgekLd 33 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVA---ERGERLT 33 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHH
Confidence 7899999999999999999999876 5999976
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.98 E-value=1.3e-10 Score=76.41 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=32.1
Q ss_pred chhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 122 PNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 122 ~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
+..|+|.+++.+|+||++||++||++|| +|||+|+
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvL---eRGEkLd 61 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVL---ERDQKLS 61 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHH
Confidence 5689999999999999999999999876 5999986
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.94 E-value=2.2e-10 Score=74.72 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=31.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 123 NADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 123 ~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
+.|++.+++++|+||++||++|||+++ +|||+|+
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL---~RgekL~ 36 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVL---ERDQKLS 36 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHH
Confidence 469999999999999999999999876 5999976
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=98.94 E-value=2.8e-10 Score=77.65 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=32.5
Q ss_pred chhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCccc
Q 031220 122 PNADRINRIKGEMSQETRSASESRLGVSEAQYGGETSSS 160 (163)
Q Consensus 122 ~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~~ 160 (163)
++.|++.+++.+|+||++||++|||+|+ +|||+|+.
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvL---eRGEkLd~ 65 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVL---ERDQKLSE 65 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHH---CCCCSSCC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH---HcccHHHH
Confidence 5679999999999999999999999876 59999864
No 15
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.63 E-value=1.5e-08 Score=79.94 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=22.9
Q ss_pred hhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCc
Q 031220 123 NADRINRIKGEMSQETRSASESRLGVSEAQYGGETS 158 (163)
Q Consensus 123 ~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~ 158 (163)
..|.+.++|+||+||++||++|||||+| |||+|
T Consensus 278 p~d~l~~lq~~i~ev~~im~~ni~~vl~---rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSEVEGVKNIMTQNVERILA---RGENL 310 (310)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH---HC---
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHh---ccCCC
Confidence 3689999999999999999999999875 99986
No 16
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.61 E-value=6.8e-09 Score=62.86 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=27.9
Q ss_pred hHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 125 DRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 125 dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
.++.+++.++++|++||.+||+||+| |||+|+
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlE---RGekL~ 35 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDE---RGQKLS 35 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 47899999999999999999999875 999975
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.58 E-value=4.2e-11 Score=65.36 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=28.8
Q ss_pred chhhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCC
Q 031220 122 PNADRINRIKGEMSQETRSASESRLGVSEAQYGGET 157 (163)
Q Consensus 122 ~~~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~ 157 (163)
++.|++.+++.+|+||++||.+||+||| +||+.
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvL---eRg~~ 38 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVL---ERDCX 38 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHS---CCBC-
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHH---HcCCC
Confidence 4568999999999999999999999976 59973
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=98.13 E-value=1.1e-05 Score=58.75 Aligned_cols=109 Identities=16% Similarity=0.319 Sum_probs=73.5
Q ss_pred EEEEEEeCCeeEeeeeCCCCC----HHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeC--CEEEEEEecCCCCcccHH
Q 031220 4 LFSLVARGSVVLAECSATATN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIPF 77 (163)
Q Consensus 4 ~Y~~Iar~~~iLae~~~~~~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~--~~~~~~itd~~~~~~~af 77 (163)
+.+.+.+|++||++|+..... .+.+++.+|-.=. .+..+|.+++|...|..++ +++|++|=..-.+-.-.=
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 578899999999999654322 5777777774322 1234688899999998876 899999966655555556
Q ss_pred HHHHHHHHHHHhhhcccccc---c----CCCCchhhhHHHHHHHH
Q 031220 78 AFLEDIHQRFVKTYGRAVLS---A----QAYGMNDEFSRVLSQQM 115 (163)
Q Consensus 78 ~fL~~i~~~F~~~~~~~~~~---~----~~~~~~~~F~~~l~~~~ 115 (163)
.||+.++..|...|+..... . .+..++..|...+++.-
T Consensus 90 ~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e 134 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAE 134 (185)
T ss_dssp HHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHH
Confidence 89999999999999644211 1 12345567776666653
No 19
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.014 Score=39.87 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=47.7
Q ss_pred HHHHHHHhccCCCCCCCee---EEE-eCCEEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 031220 26 SAIARQILDKIPGNNDSHV---SYS-QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ 85 (163)
Q Consensus 26 ~~~~~~vl~~i~~~~~~k~---~~~-~~~~~~h~l~---~~~~~~~~itd~~~~~~~af~fL~~i~~ 85 (163)
+.+...|++++-+-.+.|+ +.. .+||-++|.. +++.+|+|.|..+.|+-+|...|.++++
T Consensus 48 ~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 48 NLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4555778899876444444 443 4899999987 2478999999999999999999999976
No 20
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=93.85 E-value=1 Score=30.86 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=50.3
Q ss_pred eeEEEeCCEEEEE-EEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhccccccc-CCCCchhhhHHHHHHHHHHhc
Q 031220 43 HVSYSQDRYIFHV-KRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSA-QAYGMNDEFSRVLSQQMEYYS 119 (163)
Q Consensus 43 k~~~~~~~~~~h~-l~~~~~~~~~itd~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~~~~F~~~l~~~~~~yn 119 (163)
+.+...++|..|+ .+..|+=|+.++|+. ...-.-.||.+|..-|....-+..... .|-. ...|...+++++++|-
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~-s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIR-SSAFDRKVQFLGKKHL 140 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCC-CHHHHHHHHHHHHHHT
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHHhc
Confidence 4566678888874 456799999999973 244677899999987776432222111 1221 2479999999988874
No 21
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=93.41 E-value=0.87 Score=31.72 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=60.8
Q ss_pred eEEEEEE--eCCeeEeeeeCCC-CCH---HHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCcccH
Q 031220 3 ILFSLVA--RGSVVLAECSATA-TNA---SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIP 76 (163)
Q Consensus 3 I~Y~~Ia--r~~~iLae~~~~~-~~~---~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~a 76 (163)
|.+..|. +|.++|+-|-... .+. ..+.+.+..++... + .-.+..+++.|.|....++.|+|+++.+.+.-..
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~-~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT-D-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSC-C-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-C-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 4444444 4457888776432 221 22333344333321 2 3466789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 031220 77 FAFLEDIHQRFVKTY 91 (163)
Q Consensus 77 f~fL~~i~~~F~~~~ 91 (163)
+.||..+.+-+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888777
No 22
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=92.94 E-value=1.5 Score=30.14 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=69.4
Q ss_pred CceEEEEEEeC-CeeEeeeeC--CC--C----C-HH------HHHHHHhccCCCC--CCCeeEEEeCCEEEEEE-EeCCE
Q 031220 1 MAILFSLVARG-SVVLAECSA--TA--T----N-AS------AIARQILDKIPGN--NDSHVSYSQDRYIFHVK-RTDGL 61 (163)
Q Consensus 1 M~I~Y~~Iar~-~~iLae~~~--~~--~----~-~~------~~~~~vl~~i~~~--~~~k~~~~~~~~~~h~l-~~~~~ 61 (163)
|.|++..|.-. +.+|-+..- .. + + .. --...+.+++.|. .....+++.++|..|+. +-.|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 77777666554 566665532 11 1 1 10 1123444555442 25567888899988855 55799
Q ss_pred EEEEEecCCCCcccHHHHHHHHH-HHHHhhhc-ccccc-cCCCCchhhhHHHHHHHHHHhc
Q 031220 62 TVLCMADDTAGRRIPFAFLEDIH-QRFVKTYG-RAVLS-AQAYGMNDEFSRVLSQQMEYYS 119 (163)
Q Consensus 62 ~~~~itd~~~~~~~af~fL~~i~-~~F~~~~~-~~~~~-~~~~~~~~~F~~~l~~~~~~yn 119 (163)
=|+.+||+..+ -.-.||.+|. +-|....- +.... ..|-. ...|+..++++++.+.
T Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~-s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 81 KVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ-SELFRSRLDSYVRSLP 138 (145)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-CHHHHHHHHHHHTTST
T ss_pred EEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHhCc
Confidence 99999998754 4778999999 56664221 22111 11221 2578888988887653
No 23
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.59 E-value=2.4 Score=29.43 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=43.3
Q ss_pred eEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 031220 44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (163)
Q Consensus 44 ~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~F~~~~~ 92 (163)
-.++.+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3467789999998899999999999999999999999998888887665
No 24
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=91.37 E-value=0.85 Score=31.14 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=43.7
Q ss_pred eeEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 031220 43 HVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG 92 (163)
Q Consensus 43 k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~F~~~~~ 92 (163)
--.++.+++.|-|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 47 ~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 47 TNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34467789999998889999999999999999999999998888887775
No 25
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=91.13 E-value=3 Score=30.86 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=60.9
Q ss_pred HHHhccCCCC--CCCeeEEEeCCEEEEEE-EeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc-cccccc-CCCCch
Q 031220 30 RQILDKIPGN--NDSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG-RAVLSA-QAYGMN 104 (163)
Q Consensus 30 ~~vl~~i~~~--~~~k~~~~~~~~~~h~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~~F~~~~~-~~~~~~-~~~~~~ 104 (163)
..+..++.|. ...-.+++.+.|..|+. +..|+-|+.+||+. ..-.-.||.+|..-|....- +..... .|-. .
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 4455666652 23457788899999855 55799999999986 55778999999977765321 222111 1221 2
Q ss_pred hhhHHHHHHHHHHhcCC
Q 031220 105 DEFSRVLSQQMEYYSDD 121 (163)
Q Consensus 105 ~~F~~~l~~~~~~yn~~ 121 (163)
..|...++++++.++..
T Consensus 196 ~~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 196 ELFDQNLKLALEVAEKA 212 (219)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 58999999999998764
No 26
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.79 E-value=3.3 Score=33.41 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=59.5
Q ss_pred CceEEEEEEeC--CeeEeeeeCC--C-CCHHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCccc
Q 031220 1 MAILFSLVARG--SVVLAECSAT--A-TNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRI 75 (163)
Q Consensus 1 M~I~Y~~Iar~--~~iLae~~~~--~-~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~ 75 (163)
|-|....|.-. .++|+-+-.. . +-.+.+-+.++.+-.. ...--.++.+++.|.|...+++.|+|+++.+.+.-.
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 55556666543 3555544321 1 1234444455543210 122235678899999998999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 031220 76 PFAFLEDIHQRFVKTYG 92 (163)
Q Consensus 76 af~fL~~i~~~F~~~~~ 92 (163)
.+.||..+.+-+..-++
T Consensus 80 ~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998888877664
No 27
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=88.78 E-value=3.6 Score=30.38 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=49.7
Q ss_pred CeeEEEeCCEEEEE-EEeCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhhc-ccccc
Q 031220 42 SHVSYSQDRYIFHV-KRTDGLTVLCMADDTAGR----------------------RIPFAFLEDIHQRFVKTYG-RAVLS 97 (163)
Q Consensus 42 ~k~~~~~~~~~~h~-l~~~~~~~~~itd~~~~~----------------------~~af~fL~~i~~~F~~~~~-~~~~~ 97 (163)
.-..+..+.|..|+ ..-.|+=|++++|+..+. ...-.||.+|..-|.+..- +....
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45667778888875 456799999999997744 4467899999977776321 22111
Q ss_pred c-CCCCchhhhHHHHHHHHHHh
Q 031220 98 A-QAYGMNDEFSRVLSQQMEYY 118 (163)
Q Consensus 98 ~-~~~~~~~~F~~~l~~~~~~y 118 (163)
. .|-. ...|+..++.+++.+
T Consensus 198 ~~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCC-CHHHHHHHHHHHHHH
T ss_pred CCCccc-cHHHHHHHHHHHHhc
Confidence 1 1111 247888888887765
No 28
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=88.47 E-value=7.5 Score=31.41 Aligned_cols=82 Identities=10% Similarity=0.166 Sum_probs=55.4
Q ss_pred eCCeeEeeeeCCCCCHHHHHHHHhccCCCC--CCCeeEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHH
Q 031220 10 RGSVVLAECSATATNASAIARQILDKIPGN--NDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRF 87 (163)
Q Consensus 10 r~~~iLae~~~~~~~~~~~~~~vl~~i~~~--~~~k~~~~~~~~~~h~l~~~~~~~~~itd~~~~~~~af~fL~~i~~~F 87 (163)
+|.++|+-+-..... ...+......+... ...--.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+
T Consensus 11 ~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl 89 (435)
T 2vgl_M 11 KGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVM 89 (435)
T ss_dssp TCCEEEEEECSSSCC-HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCCC-hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 345666665543222 22333333333211 122345678999999998999999999999999999999999988888
Q ss_pred Hhhhc
Q 031220 88 VKTYG 92 (163)
Q Consensus 88 ~~~~~ 92 (163)
..-++
T Consensus 90 ~~yf~ 94 (435)
T 2vgl_M 90 AAYFG 94 (435)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 87665
No 29
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=87.79 E-value=2.9 Score=29.25 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHhccCCCCC--CCeeEEEeCCEEEEEE-EeCCEEEEEEecCCCCcccHHHHHHHHHH-HHHhhh-ccc-----cccc-
Q 031220 30 RQILDKIPGNN--DSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQ-RFVKTY-GRA-----VLSA- 98 (163)
Q Consensus 30 ~~vl~~i~~~~--~~k~~~~~~~~~~h~l-~~~~~~~~~itd~~~~~~~af~fL~~i~~-~F~~~~-~~~-----~~~~- 98 (163)
+.+.+++.|.. +.-..++.+.|..|+. +-.|+-|+++||+..+ -.-.+|.+|.. -|..-. .+. ....
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 55556666532 4567777899999866 4579999999998744 56688999997 665421 111 1111
Q ss_pred --------CCCCchhhhHHHHHHHHHHh
Q 031220 99 --------QAYGMNDEFSRVLSQQMEYY 118 (163)
Q Consensus 99 --------~~~~~~~~F~~~l~~~~~~y 118 (163)
.|-. ...|...++++++.+
T Consensus 130 ~~~~~~~~~pI~-s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKIT-NRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred cccccccCcCcc-cHHHHHHHHHHHHhc
Confidence 1211 247888888877654
No 30
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=83.29 E-value=1.2 Score=21.69 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHhcHHHHHhhhhcCC
Q 031220 129 RIKGEMSQETRSASESRLGVSEAQYGGE 156 (163)
Q Consensus 129 ~i~~~v~evk~im~~NI~kvle~l~RGe 156 (163)
.+++++.++| +|||.+++.|++=|
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4566776665 46777777776644
No 31
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=81.19 E-value=4.2 Score=24.84 Aligned_cols=48 Identities=4% Similarity=0.061 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCch-hhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCC
Q 031220 109 RVLSQQMEYYSDDPN-ADRINRIKGEMSQETRSASESRLGVSEAQYGGE 156 (163)
Q Consensus 109 ~~l~~~~~~yn~~~~-~dki~~i~~~v~evk~im~~NI~kvle~l~RGe 156 (163)
+.....+++|+.++. .....++++-++....-=..||.++++.+....
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~kI~~S~ 69 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTSP 69 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCc
Confidence 335667788998876 488889999998888888888888877655443
No 32
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=66.30 E-value=4.1 Score=25.99 Aligned_cols=45 Identities=4% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCch-hhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcC
Q 031220 111 LSQQMEYYSDDPN-ADRINRIKGEMSQETRSASESRLGVSEAQYGG 155 (163)
Q Consensus 111 l~~~~~~yn~~~~-~dki~~i~~~v~evk~im~~NI~kvle~l~RG 155 (163)
.+..+++||.++. .+...++++-+++...-=..||.++++.+...
T Consensus 42 Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~I~~S 87 (96)
T 1utr_A 42 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTS 87 (96)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC
Confidence 3455668988875 48888999999888888888888887755543
No 33
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=62.05 E-value=12 Score=18.06 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=19.7
Q ss_pred hhhHHHHHHHhHHHHHHHHHhcH
Q 031220 123 NADRINRIKGEMSQETRSASESR 145 (163)
Q Consensus 123 ~~dki~~i~~~v~evk~im~~NI 145 (163)
..+|+.-+++.|+|-++|..++=
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999998873
No 34
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=61.68 E-value=18 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=31.7
Q ss_pred eEEEEEEeCCeeEeeeeCCCCCHHHHHHHHhccCCCCCCCeeEEEeCCEEEEEEE
Q 031220 3 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKR 57 (163)
Q Consensus 3 I~Y~~Iar~~~iLae~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~ 57 (163)
|+|..|.+++. |.+++..|. +|.- +.+--+|++++.+||..-
T Consensus 86 iiyltiskdni--cqfsdekge----------qidi-nsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 86 IIYLTISKDNI--CQFSDEKGE----------QIDI-NSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEECTTCC--EEEECTTSC----------EECC-CSSSSEEEETTEEEEEEE
T ss_pred EEEEEEecCcc--eecccccCc----------Eeec-cccccceeecceEeehhc
Confidence 78888888874 788887664 3332 356778999999999864
No 35
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=58.45 E-value=11 Score=22.47 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCch-hhHHHHHHHhHHHHHHHHHhcHHHHHhhh
Q 031220 110 VLSQQMEYYSDDPN-ADRINRIKGEMSQETRSASESRLGVSEAQ 152 (163)
Q Consensus 110 ~l~~~~~~yn~~~~-~dki~~i~~~v~evk~im~~NI~kvle~l 152 (163)
.....+++|+.++. .....++++-++....-=..||.++++.+
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI 63 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKI 63 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34566778988875 47888888888877777777777776544
No 36
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=54.72 E-value=14 Score=22.53 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=30.9
Q ss_pred hHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCccc
Q 031220 125 DRINRIKGEMSQETRSASESRLGVSEAQYGGETSSS 160 (163)
Q Consensus 125 dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~~ 160 (163)
+.+..++..+.+..+-+.+.-+++.++.++-|.|++
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~ 57 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQA 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 567778888888888999999999999999988765
No 37
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=52.27 E-value=14 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHH---HHHhcHHHHHhhhhcCCCcc
Q 031220 126 RINRIKGEMSQETR---SASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 126 ki~~i~~~v~evk~---im~~NI~kvle~l~RGe~~~ 159 (163)
.+++++++|.++.. -|..-|+.+|+.+..|+-.+
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~~ 39 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIK 39 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 45677777777654 35556777777777776543
No 38
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=46.51 E-value=51 Score=21.62 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHHHHHhhhcccccccCCCCchhhhHHHHHHHHHHhcCCch----hhHHHHHHHhHHHHHH
Q 031220 73 RRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN----ADRINRIKGEMSQETR 139 (163)
Q Consensus 73 ~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~----~dki~~i~~~v~evk~ 139 (163)
.+-+-.=+.+....|...|.........-++ ..+...|..+-.||+..+. .+...+|.+|++++..
T Consensus 40 ~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~ 109 (115)
T 2kmf_A 40 RQEVQDTARGQINDYISRYRRKGDAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAER 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4445566667777788777533222222222 3566789999999985432 3444566666555443
No 39
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=40.86 E-value=74 Score=20.79 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHHHHHhhhcccccccCCCCchhhhHHHHHHHHHHhcCCch----hhHHHHHHHhHHHHHHH
Q 031220 73 RRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN----ADRINRIKGEMSQETRS 140 (163)
Q Consensus 73 ~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~----~dki~~i~~~v~evk~i 140 (163)
..-+-.=+.+....|...|.........-++ ..+...|..+-.||+..+. .+...+|.+|++++...
T Consensus 36 ~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf-ttm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~a 106 (113)
T 2y6x_A 36 KKAAQAEARKKLNDFFALYRRDDSLRSLSSF-MTMQTALNSLAGHYSSYPNRPLPEKLKARLEQEFKQVELA 106 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHTSHHH-HHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3344455666677777777533222222222 3667889999999986542 34445666666555443
No 40
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=40.68 E-value=32 Score=19.34 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=19.8
Q ss_pred hhHHHHHHHhHHHHHHHHHhc
Q 031220 124 ADRINRIKGEMSQETRSASES 144 (163)
Q Consensus 124 ~dki~~i~~~v~evk~im~~N 144 (163)
.+.+..+++++.-+.++..+|
T Consensus 6 ~~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999
No 41
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=39.77 E-value=50 Score=22.81 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCch-hhHHHHHHHhHH-HHHHHHHhcHHHHHhh
Q 031220 110 VLSQQMEYYSDDPN-ADRINRIKGEMS-QETRSASESRLGVSEA 151 (163)
Q Consensus 110 ~l~~~~~~yn~~~~-~dki~~i~~~v~-evk~im~~NI~kvle~ 151 (163)
.....+++|+.++. .....++++-++ ....-=..||.++++.
T Consensus 21 eYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 21 EYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 34566778998875 478888898888 5444555566655543
No 42
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=37.85 E-value=17 Score=22.98 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=29.8
Q ss_pred hhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCcc
Q 031220 124 ADRINRIKGEMSQETRSASESRLGVSEAQYGGETSS 159 (163)
Q Consensus 124 ~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~ 159 (163)
.+.+..++..+.+..+-+.+.-+++.++.+|-|.|+
T Consensus 36 q~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~ 71 (96)
T 1sfc_A 36 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 357778888888888889999999998888887765
No 43
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=35.34 E-value=20 Score=22.36 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=27.7
Q ss_pred hhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCccc
Q 031220 124 ADRINRIKGEMSQETRSASESRLGVSEAQYGGETSSS 160 (163)
Q Consensus 124 ~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~~ 160 (163)
.+.+..++.-+.+.-+-+.++-|++.++.++-|.|++
T Consensus 11 q~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 11 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3567777777777888888888888888877776653
No 44
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=34.98 E-value=45 Score=18.91 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=19.7
Q ss_pred hhHHHHHHHhHHHHHHHHHhc
Q 031220 124 ADRINRIKGEMSQETRSASES 144 (163)
Q Consensus 124 ~dki~~i~~~v~evk~im~~N 144 (163)
.+.+..+++++.-+.++..+|
T Consensus 8 ~~si~~l~~ql~sla~vvlQN 28 (55)
T 1mof_A 8 EKSISNLEKSLTSLSEVVLQN 28 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999
No 45
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=32.67 E-value=37 Score=20.25 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHhcHHHHH
Q 031220 131 KGEMSQETRSASESRLGVS 149 (163)
Q Consensus 131 ~~~v~evk~im~~NI~kvl 149 (163)
..+++++++|+..|+.++-
T Consensus 6 ~~~~e~ir~IL~~NLykiR 24 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTR 24 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988874
No 46
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=31.73 E-value=36 Score=16.14 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 031220 126 RINRIKGEMSQETRSAS 142 (163)
Q Consensus 126 ki~~i~~~v~evk~im~ 142 (163)
-+.++++.+.++++-|.
T Consensus 6 i~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566777777776654
No 47
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=31.36 E-value=34 Score=20.63 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHhcCCch
Q 031220 105 DEFSRVLSQQMEYYSDDPN 123 (163)
Q Consensus 105 ~~F~~~l~~~~~~yn~~~~ 123 (163)
..|...+++++++||.|-.
T Consensus 28 ~RFQ~~Mq~lieKYn~PFe 46 (81)
T 3r45_C 28 RRFQRRMQRLIEKYNQPFE 46 (81)
T ss_dssp HHHHHHHHHHHHHHCSCCT
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4788999999999998743
No 48
>3kpe_B Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus}
Probab=31.08 E-value=60 Score=16.87 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=17.3
Q ss_pred hHHHHHHHhHHHHHHHHHhcHHHHHhhhh
Q 031220 125 DRINRIKGEMSQETRSASESRLGVSEAQY 153 (163)
Q Consensus 125 dki~~i~~~v~evk~im~~NI~kvle~l~ 153 (163)
-.|.++...|++.+....+. +++|+.++
T Consensus 9 vai~qV~e~InqS~~~i~~S-d~lL~~~~ 36 (39)
T 3kpe_B 9 ASISQVNEKINQSLAFIRKS-DELLHNVN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 35667777777777776665 44554333
No 49
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.90 E-value=1.4e+02 Score=20.97 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHhHHHHHHHHHhcH
Q 031220 109 RVLSQQMEYYSDDPNADRINRIKGEMSQETRSASESR 145 (163)
Q Consensus 109 ~~l~~~~~~yn~~~~~dki~~i~~~v~evk~im~~NI 145 (163)
..|..++. +++++..++.++.+++.+.+.-|.+.-
T Consensus 99 ~EL~aL~~--a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 99 YEYNALLT--ASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543 355678899999999988888777763
No 50
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=30.90 E-value=87 Score=18.66 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHhcHHHHHhhhhcCC
Q 031220 129 RIKGEMSQETRSASESRLGVSEAQYGGE 156 (163)
Q Consensus 129 ~i~~~v~evk~im~~NI~kvle~l~RGe 156 (163)
+.++++..=+-.=.+.|+|+.|+|.|-+
T Consensus 43 ~lek~L~~E~~LK~QAVNKLAEIMNRKd 70 (71)
T 1uix_A 43 QFEKQLLTERTLKTQAVNKLAEIMNRKE 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5666666666666778999999998854
No 51
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=30.36 E-value=21 Score=23.59 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.3
Q ss_pred hhHHHHHHHhHHHHHHHHHhcHHHHHhhhhcCCCccc
Q 031220 124 ADRINRIKGEMSQETRSASESRLGVSEAQYGGETSSS 160 (163)
Q Consensus 124 ~dki~~i~~~v~evk~im~~NI~kvle~l~RGe~~~~ 160 (163)
.+.+..++.-+.+.-+-+.+.-||+.++.+|-|.|+.
T Consensus 39 q~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~ 75 (119)
T 2kog_A 39 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 75 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3678888889999999999999999999999999864
No 52
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=29.86 E-value=25 Score=19.44 Aligned_cols=16 Identities=6% Similarity=0.306 Sum_probs=12.9
Q ss_pred hhHHHHHHHhHHHHHH
Q 031220 124 ADRINRIKGEMSQETR 139 (163)
Q Consensus 124 ~dki~~i~~~v~evk~ 139 (163)
.+++++++.++++|+.
T Consensus 31 ~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 31 RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4799999999999864
No 53
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=26.41 E-value=1.1e+02 Score=18.26 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHhcHHHHHhhhhcCC
Q 031220 129 RIKGEMSQETRSASESRLGVSEAQYGGE 156 (163)
Q Consensus 129 ~i~~~v~evk~im~~NI~kvle~l~RGe 156 (163)
++.+++..=+-.=.+.|+|+.|+|.|-+
T Consensus 43 ~lek~L~~E~~LK~QAVNKLAEIMNRKd 70 (71)
T 1s1c_X 43 AFEKNINTERTLKTQAVNKLAEIMNRKD 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6666666666666778999999998854
No 54
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=25.25 E-value=52 Score=16.42 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=14.4
Q ss_pred CcccHHHHHHHHHHHHHh
Q 031220 72 GRRIPFAFLEDIHQRFVK 89 (163)
Q Consensus 72 ~~~~af~fL~~i~~~F~~ 89 (163)
+..-+..||+.+...|+.
T Consensus 11 ~~EsPs~FlerL~eayR~ 28 (32)
T 1bm4_A 11 PNESPSAFLERLKEAYRR 28 (32)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 445688999999999874
No 55
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=24.71 E-value=32 Score=22.44 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCHHHHHHHH----hccCCCCCCCeeEEEeCC-EEEEEEE--eCCEEEEEEecCCCCcccHH
Q 031220 23 TNASAIARQI----LDKIPGNNDSHVSYSQDR-YIFHVKR--TDGLTVLCMADDTAGRRIPF 77 (163)
Q Consensus 23 ~~~~~~~~~v----l~~i~~~~~~k~~~~~~~-~~~h~l~--~~~~~~~~itd~~~~~~~af 77 (163)
.+|+.+...+ =++++.+..-|..|+.+| ..++-+- ++|-.|+|.. .+-.+++.+
T Consensus 41 ~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YVc~~-~e~fk~i~Y 101 (113)
T 1mg4_A 41 RSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGS-IEPFKKLEY 101 (113)
T ss_dssp SSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEEEES-SSCCCCCCT
T ss_pred CCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEEEeC-CCCceecCc
Confidence 6676555544 455554446888888776 6665442 4788999954 444444443
No 56
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=24.16 E-value=1.2e+02 Score=21.09 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=33.0
Q ss_pred EEEEEEEeC-----------CEEEEEEecCCCCcccHHHHHHHHHHHHHhhhcc
Q 031220 51 YIFHVKRTD-----------GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGR 93 (163)
Q Consensus 51 ~~~h~l~~~-----------~~~~~~itd~~~~~~~af~fL~~i~~~F~~~~~~ 93 (163)
..|.|-++| ++--+-|+|.+||--..-.=++.....|...|+-
T Consensus 106 rIYTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~af~dlyGY 159 (170)
T 4ftx_A 106 KIYTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLFGY 159 (170)
T ss_dssp EEEEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHGGGGGGTTC
T ss_pred EEEEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHHHHHHHhcc
Confidence 455566655 8999999999999777776677777788877763
No 57
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.00 E-value=1e+02 Score=16.57 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=18.6
Q ss_pred hHHHHHHHhHHHHHHHHHhcHHHHHhhhhcC
Q 031220 125 DRINRIKGEMSQETRSASESRLGVSEAQYGG 155 (163)
Q Consensus 125 dki~~i~~~v~evk~im~~NI~kvle~l~RG 155 (163)
+=+..+.+++..+|+=..+.|.. |+-.||
T Consensus 15 EIL~E~RkElqK~K~EIIeAi~~--El~~~~ 43 (45)
T 1use_A 15 ELLEEVKKELQKVKEEIIEAFVQ--ELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhcC
Confidence 45566777888888777777654 444555
No 58
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=21.52 E-value=67 Score=19.93 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=18.9
Q ss_pred HHHHHHHHhcHHHHHhhhhcCCC
Q 031220 135 SQETRSASESRLGVSEAQYGGET 157 (163)
Q Consensus 135 ~evk~im~~NI~kvle~l~RGe~ 157 (163)
.+=+.++.+.+++|++.|++|+.
T Consensus 54 k~C~~~v~~~~d~II~eLe~g~~ 76 (87)
T 3s64_A 54 KECKALAKIEMGAIKTLLENGSA 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhHHHHHHHHHcCCC
Confidence 34577888999999999999975
Done!