Query 031222
Match_columns 163
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 17:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1svd_M Ribulose bisphosphate c 67.8 3.6 0.00012 30.6 2.8 30 70-100 10-39 (110)
2 1rbl_M Ribulose 1,5 bisphospha 67.4 4.1 0.00014 30.3 3.1 31 69-100 7-37 (109)
3 1bwv_S Rubisco, protein (ribul 67.3 4.1 0.00014 31.6 3.1 30 71-100 2-31 (138)
4 1wdd_S Ribulose bisphosphate c 65.7 4 0.00014 31.3 2.8 29 71-100 10-38 (128)
5 1bxn_I Rubisco, protein (ribul 64.8 4.4 0.00015 31.4 2.9 30 71-100 2-31 (139)
6 1gk8_I Ribulose bisphosphate c 61.8 5.1 0.00018 31.2 2.8 30 71-101 10-39 (140)
7 4f0h_B Ribulose bisphosphate c 56.5 8.4 0.00029 29.9 3.1 31 71-101 2-32 (138)
8 3r84_A Mediator of RNA polymer 52.2 9.4 0.00032 27.5 2.6 48 109-158 22-76 (86)
9 1wnd_A Putative betaine aldehy 46.8 13 0.00044 32.1 3.1 50 75-124 49-104 (495)
10 3zxw_B Ribulose bisphosphate c 44.9 12 0.00042 28.1 2.3 49 70-119 7-81 (118)
11 4f3x_A Putative aldehyde dehyd 40.9 17 0.00059 31.4 3.0 51 75-125 51-107 (498)
12 2r9i_A Putative phage capsid p 36.6 55 0.0019 25.5 5.0 45 92-148 6-50 (141)
13 1h6g_A Alpha-1 catenin; adhesi 36.3 48 0.0016 26.5 4.7 64 82-151 186-252 (256)
14 3lns_A Benzaldehyde dehydrogen 35.8 63 0.0021 27.3 5.6 75 74-148 16-107 (457)
15 3iwj_A Putative aminoaldehyde 33.7 86 0.0029 26.9 6.2 77 75-151 34-131 (503)
16 4flb_A Regulation of nuclear P 33.6 17 0.0006 25.5 1.6 35 83-118 94-131 (132)
17 2guz_B Mitochondrial import in 30.6 36 0.0012 22.5 2.7 35 83-117 19-58 (65)
18 4dng_A Uncharacterized aldehyd 29.1 52 0.0018 27.9 4.0 51 75-125 33-89 (485)
19 2epj_A Glutamate-1-semialdehyd 27.7 1.7E+02 0.0057 22.9 6.5 55 84-138 73-135 (434)
20 2bsq_E FITA, trafficking prote 26.9 84 0.0029 21.6 4.1 41 85-125 9-49 (77)
21 3hiu_A Uncharacterized protein 26.5 55 0.0019 25.2 3.4 30 121-151 87-120 (166)
22 3ros_A NAD-dependent aldehyde 26.2 1.3E+02 0.0044 25.8 6.0 74 75-148 15-104 (484)
23 3icx_A PRE mRNA splicing prote 25.9 2.5E+02 0.0086 23.2 7.5 48 102-149 71-118 (255)
24 4gwp_A Mediator of RNA polymer 24.9 34 0.0012 26.0 1.9 37 120-158 36-79 (115)
25 3id6_A NOP5, PRE mRNA splicing 24.4 2.5E+02 0.0086 23.2 7.2 73 78-154 167-252 (268)
26 2plg_A TLL0839 protein; hypoth 23.5 8.3 0.00028 30.2 -1.8 57 87-144 87-156 (163)
27 1a4s_A ALDH, betaine aldehyde 23.4 83 0.0028 27.1 4.3 52 75-126 47-104 (503)
28 2xgw_A Peroxide resistance pro 23.1 24 0.00082 27.4 0.8 41 58-98 10-54 (199)
29 3etf_A Putative succinate-semi 22.6 1.9E+02 0.0064 24.3 6.2 74 76-149 19-108 (462)
30 1ru0_A DCOH-like protein dcohm 22.5 72 0.0025 22.5 3.2 58 79-142 6-63 (105)
31 3ogh_B Protein YCIE; iron-bind 22.0 84 0.0029 24.3 3.7 31 121-152 90-124 (171)
32 2j9u_A VPS28, vacuolar protein 21.9 54 0.0019 23.8 2.4 20 133-152 6-25 (96)
33 1yz7_A Probable translation in 21.7 2E+02 0.0068 22.5 5.8 61 65-137 38-117 (188)
34 2w8n_A Succinate-semialdehyde 21.2 94 0.0032 26.6 4.1 70 75-144 37-122 (487)
35 3bey_A Conserved protein O2701 20.6 91 0.0031 20.1 3.2 37 84-120 11-49 (96)
36 3hxa_A Pterin-4-alpha-carbinol 20.5 57 0.002 23.1 2.3 58 79-142 4-61 (104)
37 2j9w_A VPS28, VPS28-PROV prote 20.4 64 0.0022 23.6 2.6 20 133-152 9-28 (102)
38 3m91_A Proteasome-associated A 20.3 95 0.0033 20.2 3.1 23 133-155 27-49 (51)
39 3e8t_A Takeout 1, takeout-like 20.2 80 0.0027 23.7 3.2 44 85-133 167-210 (220)
40 1uxt_A Glyceraldehyde-3-phosph 20.2 91 0.0031 26.8 3.9 74 76-149 44-124 (501)
No 1
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=67.76 E-value=3.6 Score=30.61 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031222 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (163)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (163)
.|.|- +.+.||+++|.+|.+-+.-|++-.|
T Consensus 10 ~~~~e-tfSyLP~lt~eqI~kQV~Yll~qGw 39 (110)
T 1svd_M 10 SLKYE-TFSYLPPMNAERIRAQIKYAIAQGW 39 (110)
T ss_dssp CCCCS-TTTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred Ccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 45554 7999999999999999999998766
No 2
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=67.40 E-value=4.1 Score=30.26 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=26.2
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031222 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (163)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (163)
..|.|- +.+.||+++|.+|.+-+.-|++-.|
T Consensus 7 ~~~~~e-tfSyLP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 7 KERRFE-TFSYLPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp CCCCCS-TTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred Cccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 345554 7999999999999999999998665
No 3
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=67.31 E-value=4.1 Score=31.57 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031222 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (163)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (163)
|.--+..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~Yll~qGw 31 (138)
T 1bwv_S 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKL 31 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444467889999999999999999999776
No 4
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=65.71 E-value=4 Score=31.28 Aligned_cols=29 Identities=14% Similarity=0.533 Sum_probs=24.7
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031222 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (163)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (163)
|.|- ..+.||+++|.+|.+-+..|++-.|
T Consensus 10 ~~~~-tfSyLP~lt~eqI~kQI~Yll~qGw 38 (128)
T 1wdd_S 10 KKFE-TLSYLPPLTVEDLLKQIEYLLRSKW 38 (128)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 4454 7999999999999999999998655
No 5
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=64.79 E-value=4.4 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=25.7
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 031222 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (163)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (163)
|.--+..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~YlL~qGw 31 (139)
T 1bxn_I 2 RITQGTFSFLPELTDEQITKQLEYCLNQGW 31 (139)
T ss_dssp CCCCSBTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444467889999999999999999998766
No 6
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=61.85 E-value=5.1 Score=31.17 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=25.6
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031222 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (163)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (163)
|.|- +.+.||+++|.+|.+-+..|++-.|.
T Consensus 10 ~~~e-tfSyLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 10 KMFE-TFSYLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred ceec-ccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 3454 79999999999999999999987773
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=56.45 E-value=8.4 Score=29.90 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031222 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (163)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (163)
|.=-+..+-||+++|.+|.+-..-|++-.|.
T Consensus 2 ~~t~~tfSyLP~ltd~qI~kQI~YlL~qGw~ 32 (138)
T 4f0h_B 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHhCCCE
Confidence 3334577899999999999999999998773
No 8
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=52.16 E-value=9.4 Score=27.46 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=31.9
Q ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhh---hhhhccC
Q 031222 109 HDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGII----MNIKME---FDDEIGL 158 (163)
Q Consensus 109 ~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL----~sLrme---iDDl~Gl 158 (163)
..+-.++..-++.|.|-+++|..|. +++.+|+..| +.||.| +||.+|-
T Consensus 22 ~~as~~i~tls~~k~~~~~~K~~F~--~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 22 QEASQVTFIFGELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHhhcccCCcHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444444444445556577888775 6788999877 467876 6888873
No 9
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=46.82 E-value=13 Score=32.13 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=36.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG 124 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG 124 (163)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+-
T Consensus 49 ~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 104 (495)
T 1wnd_A 49 DVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAE 104 (495)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888777655 69999954 566667777777666654
No 10
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=44.94 E-value=12 Score=28.15 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=33.8
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 031222 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (163)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~akkalSk~t 119 (163)
.|.| |+.+-||+++|.+|.+-..-|++-.| + .|| ..|+.+++.|++...
T Consensus 7 ~kkf-eTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p 81 (118)
T 3zxw_B 7 ERRY-ETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYP 81 (118)
T ss_dssp --------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCT
T ss_pred Cccc-cccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCC
Confidence 3556 68999999999999999999998655 4 565 567888887776543
No 11
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=40.92 E-value=17 Score=31.38 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=37.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ 125 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGq 125 (163)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--
T Consensus 51 ~~i~~v~~~~~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 107 (498)
T 4f3x_A 51 AGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAAL 107 (498)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456678888888998888776554 69999975 5566677777777766643
No 12
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=36.63 E-value=55 Score=25.55 Aligned_cols=45 Identities=40% Similarity=0.461 Sum_probs=30.8
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031222 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (163)
Q Consensus 92 fKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sL 148 (163)
+|||+|.. +.+...+|.+-|.-|||-.-- .||+|||..-.|+..+
T Consensus 6 lkdllahr-----enlmdsakrarsaitddmdpa-------daaqavenvksiisei 50 (141)
T 2r9i_A 6 LKDLLAHR-----ENLMDSAKRARSAITDDMDPA-------DAAQAVENVKSIISEI 50 (141)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHCCTTSCHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhhccCCChH-------HHHHHHHHHHHHHHHH
Confidence 68888863 567788899999889886433 3566666655555443
No 13
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=36.28 E-value=48 Score=26.45 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhh---hcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031222 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSA---LSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKME 151 (163)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~akka---lSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLrme 151 (163)
.-.||+..+-+++-...==+.+.+.+++.||.+ +++|.+|...|..+.+ |.+....-...+|..
T Consensus 186 ~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~------a~~~L~~~v~~vr~a 252 (256)
T 1h6g_A 186 NYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFID------ASRLVYDGIRDIRKA 252 (256)
T ss_dssp TSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 445776555544431110112567899999998 7888888776766654 344444444555543
No 14
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=35.82 E-value=63 Score=27.27 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=45.4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH----------HHH-HHHHHHHH
Q 031222 74 SEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVL-KNVFSAAE 136 (163)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGq----------eaL-knvfRAAe 136 (163)
++.+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+-- |+. ..+.++++
T Consensus 16 ~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~ 95 (457)
T 3lns_A 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLH 95 (457)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHH
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4577888998888888888877654 69999864 5566677777776665532 333 35666666
Q ss_pred HHHHHHHHHHHH
Q 031222 137 AVEEFIGIIMNI 148 (163)
Q Consensus 137 AvEeFgGiL~sL 148 (163)
.++.|.+.+..+
T Consensus 96 ~~~~~a~~~~~~ 107 (457)
T 3lns_A 96 EIDFALAHLDEW 107 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666555443
No 15
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=33.71 E-value=86 Score=26.91 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=55.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-------ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA-------DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFS 133 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-------sW~elp~s----vv~~akkalSk~tDDkAG----------qeaLknvfR 133 (163)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.+
T Consensus 34 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~ 113 (503)
T 3iwj_A 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDD 113 (503)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345677888888999888877665 79999964 556667777777666553 355667888
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031222 134 AAEAVEEFIGIIMNIKME 151 (163)
Q Consensus 134 AAeAvEeFgGiL~sLrme 151 (163)
+++.++.|.+.+..+..+
T Consensus 114 ~~~~~~~~a~~~~~~~~~ 131 (503)
T 3iwj_A 114 VAGCFEYYADLAEKLDAR 131 (503)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888877766543
No 16
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=33.63 E-value=17 Score=25.47 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHcccCC---CchhHHHHHHhhhccc
Q 031222 83 IRDPEIQRAFKDLMAADWGE---LPASVIHDAKSALSRN 118 (163)
Q Consensus 83 i~Dpei~~afKdLmAasW~e---lp~svv~~akkalSk~ 118 (163)
+.||+.++.+..|+.+ |.+ .|+++++..+.+|+++
T Consensus 94 ~~~~~~~~kl~~ll~i-W~~r~vf~~~~i~~L~~~L~~s 131 (132)
T 4flb_A 94 VKDPSVSKSVERIFKI-WEDRNVYPEEMIVALREALSTT 131 (132)
T ss_dssp TCSTTTHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHTSC
T ss_pred hCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHhcc
Confidence 4678888888888876 655 8999999999988763
No 17
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=30.56 E-value=36 Score=22.51 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHcccCC--Cc---hhHHHHHHhhhcc
Q 031222 83 IRDPEIQRAFKDLMAADWGE--LP---ASVIHDAKSALSR 117 (163)
Q Consensus 83 i~Dpei~~afKdLmAasW~e--lp---~svv~~akkalSk 117 (163)
.++.+|+++++.||..|=-+ -+ .+-|+.||..|.+
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999998766 55 5667777777755
No 18
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=29.10 E-value=52 Score=27.90 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=37.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ 125 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGq 125 (163)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--
T Consensus 33 ~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (485)
T 4dng_A 33 SVITTASLATGKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMM 89 (485)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888877654 59999975 5566677777777766643
No 19
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=27.74 E-value=1.7e+02 Score=22.95 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHccc-CCCchhHHHHHHhhhcccC--Cch-----hHHHHHHHHHHHHHHH
Q 031222 84 RDPEIQRAFKDLMAADW-GELPASVIHDAKSALSRNN--DDK-----AGQEVLKNVFSAAEAV 138 (163)
Q Consensus 84 ~Dpei~~afKdLmAasW-~elp~svv~~akkalSk~t--DDk-----AGqeaLknvfRAAeAv 138 (163)
.+|+|.+|+++-+...| ...+.....+..+.|.+-. .+. -|.||+..+.++|.+.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999887643 2345555555655554422 222 3999999999998754
No 20
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=26.91 E-value=84 Score=21.62 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHH
Q 031222 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQ 125 (163)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGq 125 (163)
|++++.++|..=+.+=--+.+.+.....+++...+..+-|+
T Consensus 9 pd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~~~~~~l~~ 49 (77)
T 2bsq_E 9 SEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGS 49 (77)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcccccHHH
Confidence 57888899988888877788888888888876644434443
No 21
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=26.50 E-value=55 Score=25.21 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 031222 121 DKAGQEVLKNVFSAAEAVEEF----IGIIMNIKME 151 (163)
Q Consensus 121 DkAGqeaLknvfRAAeAvEeF----gGiL~sLrme 151 (163)
..++.+++++.+ ||++||-| +|+|.++=..
T Consensus 87 ~~~~d~v~d~~l-aaq~vEHyEIA~YgtL~a~A~~ 120 (166)
T 3hiu_A 87 SMMTDEVTKGVG-ISYAFEHLEIASYRALVVAARS 120 (166)
T ss_dssp ---CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899988 99999987 6888776443
No 22
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=26.19 E-value=1.3e+02 Score=25.84 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=50.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHHHHHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFSAAEAV 138 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG----------qeaLknvfRAAeAv 138 (163)
+-+..+|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.++++.+
T Consensus 15 ~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~ 94 (484)
T 3ros_A 15 EAFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKEEVELCVSIC 94 (484)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345678888888888888776654 69999875 566667777777776654 34455666777777
Q ss_pred HHHHHHHHHH
Q 031222 139 EEFIGIIMNI 148 (163)
Q Consensus 139 EeFgGiL~sL 148 (163)
+.+.+.+..+
T Consensus 95 ~~~a~~~~~~ 104 (484)
T 3ros_A 95 NYYADHGPEM 104 (484)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7666665544
No 23
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=25.92 E-value=2.5e+02 Score=23.17 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=34.1
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031222 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIK 149 (163)
Q Consensus 102 elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLr 149 (163)
.+|+.++..+..+.+.+.--.-..+-|.++..+|+-|.+..-.-..|.
T Consensus 71 ~l~~~~~~~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~ 118 (255)
T 3icx_A 71 GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLN 118 (255)
T ss_dssp TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888887777776655544556679999999999987665444433
No 24
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=24.90 E-value=34 Score=26.00 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=25.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhh---hhhccC
Q 031222 120 DDKAGQEVLKNVFSAAEAVEEFIGII----MNIKMEF---DDEIGL 158 (163)
Q Consensus 120 DDkAGqeaLknvfRAAeAvEeFgGiL----~sLrmei---DDl~Gl 158 (163)
+-|-|.+.+|.-|. +.+.+|+..| +.||.|| ||.+|-
T Consensus 36 elK~g~~~~K~qF~--~~~~~fY~~Ls~~a~~LRkEIK~lDeNiG~ 79 (115)
T 4gwp_A 36 ELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 79 (115)
T ss_dssp HHTTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccCccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 33445556666664 6788999977 5789885 788773
No 25
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=24.41 E-value=2.5e+02 Score=23.18 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCCCCC----CCHHHHHHHHHHHHc-------ccC--CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031222 78 AHMPVI----RDPEIQRAFKDLMAA-------DWG--ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI 144 (163)
Q Consensus 78 ~hlP~i----~Dpei~~afKdLmAa-------sW~--elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGi 144 (163)
.|+|++ +||..+-.+=.++.- +.. .||+.++..++.|-+.+.--.-..+-|.|+-.+|+-|.+..
T Consensus 167 ~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~-- 244 (268)
T 3id6_A 167 IHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLY-- 244 (268)
T ss_dssp TTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHH--
T ss_pred ccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH--
Confidence 466664 677666554443321 222 36999999999988887777777778999999999998754
Q ss_pred HHHHhhhhhh
Q 031222 145 IMNIKMEFDD 154 (163)
Q Consensus 145 L~sLrmeiDD 154 (163)
..|..|-|
T Consensus 245 --e~R~~L~~ 252 (268)
T 3id6_A 245 --NIRRNLNN 252 (268)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 44544433
No 26
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=23.45 E-value=8.3 Score=30.18 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcccCCCch--------hHHHHHHhhhcccCCchhHHHHHHHHHHHHH-----HHHHHHHH
Q 031222 87 EIQRAFKDLMAADWGELPA--------SVIHDAKSALSRNNDDKAGQEVLKNVFSAAE-----AVEEFIGI 144 (163)
Q Consensus 87 ei~~afKdLmAasW~elp~--------svv~~akkalSk~tDDkAGqeaLknvfRAAe-----AvEeFgGi 144 (163)
+.+.-++.||-+||+..=+ .|+-.....++. =|..-.+.|+++|+..|. -++||||.
T Consensus 87 ~~~~l~~~LLE~N~~~t~~arFaI~~n~V~~v~~r~ls~-Ld~~E~~~aIt~V~~lAD~~Dd~L~~~fg~~ 156 (163)
T 2plg_A 87 DELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGG-ITAGEISRLITIVATLADDYDDALRAEFKGE 156 (163)
T ss_dssp THHHHHHHHHHHTTTTTTTCEEEEETTEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHhccccccceEEEEECCEEEEEEEEEccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6888899999999995432 111111112222 344556888999998885 47888884
No 27
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=23.43 E-value=83 Score=27.08 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=37.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQE 126 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGqe 126 (163)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+--.
T Consensus 47 ~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 104 (503)
T 1a4s_A 47 RVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLE 104 (503)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899888877665 69999964 56666777777766665433
No 28
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=23.07 E-value=24 Score=27.42 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=20.5
Q ss_pred CCCCcccc----cccccccccccCCCCCCCCCHHHHHHHHHHHHc
Q 031222 58 DCRSSLVM----SIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAA 98 (163)
Q Consensus 58 d~~~~~s~----~~g~~R~fS~d~~hlP~i~Dpei~~afKdLmAa 98 (163)
=+|.||+| -..-++....|+..+++-.++.+-..+..++|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~LN~~LAd 54 (199)
T 2xgw_A 10 MGRDPNSMTNTLVENIYASVTHNISKKEASKNEKTKAVLNQAVAD 54 (199)
T ss_dssp ----------CHHHHHHHHHHHC------CTTHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHhcCcCCCCcccHHHHHHHHHHHHHH
Confidence 36778998 445556666789899999999999988888764
No 29
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=22.64 E-value=1.9e+02 Score=24.26 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=51.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHHHHHHHH
Q 031222 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFSAAEAVE 139 (163)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAG----------qeaLknvfRAAeAvE 139 (163)
-+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+- .|+..++.++++.++
T Consensus 19 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~ 98 (462)
T 3etf_A 19 TLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCD 98 (462)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45667888888888888777654 69999864 555666677766665442 355667788888888
Q ss_pred HHHHHHHHHh
Q 031222 140 EFIGIIMNIK 149 (163)
Q Consensus 140 eFgGiL~sLr 149 (163)
.+.+.+..+.
T Consensus 99 ~~a~~~~~~~ 108 (462)
T 3etf_A 99 WYAEHGPAML 108 (462)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhHHHhc
Confidence 7777666543
No 30
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=22.54 E-value=72 Score=22.52 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHH
Q 031222 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFI 142 (163)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFg 142 (163)
..|.+++.||+..+++|-...|...++. .+|.+.=.=+-=.+++.=+=+.|+.+|+.+
T Consensus 6 ~~~~Ls~~ei~~~L~~l~~~gW~~~~~~------~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~ 63 (105)
T 1ru0_A 6 DAQWLTAEERDQLIPGLKAAGWSELSER------DAIYKEFSFKNFNQAFGFMSRVALQAEKMN 63 (105)
T ss_dssp CCSBCCHHHHHHHHHHHHHTTCEECSSS------SCEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCCCCeEECCC------CeEEEEEEeCCHHHHHHHHHHHHHHHHHhC
Confidence 3466899999999999988899876543 256553322233455555556666666643
No 31
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=21.96 E-value=84 Score=24.32 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHhhhh
Q 031222 121 DKAGQEVLKNVFSAAEAVEEF----IGIIMNIKMEF 152 (163)
Q Consensus 121 DkAGqeaLknvfRAAeAvEeF----gGiL~sLrmei 152 (163)
..++.+++++.+ +|++||-| +|+|.++=..+
T Consensus 90 ~~~~d~v~d~~l-aaq~vEHyEIA~YgtL~a~A~~l 124 (171)
T 3ogh_B 90 IFPSDEIVKGSI-SGYVFEQFEIACYTSLLAAAKNA 124 (171)
T ss_dssp ----CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667899988 89999987 68888764433
No 32
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=21.85 E-value=54 Score=23.79 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 031222 133 SAAEAVEEFIGIIMNIKMEF 152 (163)
Q Consensus 133 RAAeAvEeFgGiL~sLrmei 152 (163)
-.||+|+-|..+.++||+.+
T Consensus 6 ~iAe~~~~FIT~mDaLKL~~ 25 (96)
T 2j9u_A 6 YVAEATGNFITVMDALKLNY 25 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 36999999999999999874
No 33
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=21.67 E-value=2e+02 Score=22.49 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=41.2
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHH---cccCCC-chhHHHHHHhhhccc---------------CCchhHH
Q 031222 65 MSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMA---ADWGEL-PASVIHDAKSALSRN---------------NDDKAGQ 125 (163)
Q Consensus 65 ~~~g~~R~fS~d~~hlP~i~Dpei~~afKdLmA---asW~el-p~svv~~akkalSk~---------------tDDkAGq 125 (163)
++|-..|-|- ..+.|||+... .-|+++ |+.+.......++++ .-+..|-
T Consensus 38 i~w~L~~kyG------------~~ydaFk~av~~~~~vl~~lip~~~~~~L~~~i~~~l~~q~vkIra~ieltc~~~dGI 105 (188)
T 1yz7_A 38 VWVPLEEEWG------------EVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGV 105 (188)
T ss_dssp THHHHHHHHS------------SHHHHHHHHHHHCGGGSBTTBCTTHHHHHHHHHHHHSCCCCEEEEEEEEEECCSTTHH
T ss_pred HHHHHHHHhC------------cHHHHHHHHHhcChHHHHHhCCHHHHHHHHHHHHHhCCCCceEEEEEEEEEeCCCchH
Confidence 3466666664 27899988776 457774 765555554444442 3356799
Q ss_pred HHHHHHHHHHHH
Q 031222 126 EVLKNVFSAAEA 137 (163)
Q Consensus 126 eaLknvfRAAeA 137 (163)
|++|.++++|++
T Consensus 106 e~IK~AL~~a~~ 117 (188)
T 1yz7_A 106 EIIKEALIRARD 117 (188)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 34
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=21.19 E-value=94 Score=26.57 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=44.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchhHH----------HHHHHHHHHHHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKAGQ----------EVLKNVFSAAEAV 138 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~akkalSk~tDDkAGq----------eaLknvfRAAeAv 138 (163)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+-- |+..++-++++.+
T Consensus 37 ~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~ 116 (487)
T 2w8n_A 37 AALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFL 116 (487)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345677888888888888776655 69999964 5566667777776665532 3333455555555
Q ss_pred HHHHHH
Q 031222 139 EEFIGI 144 (163)
Q Consensus 139 EeFgGi 144 (163)
+.+.+.
T Consensus 117 ~~~a~~ 122 (487)
T 2w8n_A 117 EWFSEE 122 (487)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 35
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.63 E-value=91 Score=20.13 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHccc--CCCchhHHHHHHhhhcccCC
Q 031222 84 RDPEIQRAFKDLMAADW--GELPASVIHDAKSALSRNND 120 (163)
Q Consensus 84 ~Dpei~~afKdLmAasW--~elp~svv~~akkalSk~tD 120 (163)
.+|++.++|.+|...-| ..||+.+.+-+.-++|..+.
T Consensus 11 ~~P~~~~~~~~l~~~~~~~~~L~~~~reLi~l~vs~~ng 49 (96)
T 3bey_A 11 ELPEVAESFKNFREAVRSEGKLTEREKLLISVACSVAVR 49 (96)
T ss_dssp GCHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHTT
T ss_pred HCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC
Confidence 47999999999988877 57999998888877776544
No 36
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=20.54 E-value=57 Score=23.06 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHH
Q 031222 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFI 142 (163)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFg 142 (163)
-.|.+++.||...+++|....|...++. .+|.+.=.=+-=.+++.=+=|.|+.+|+.|
T Consensus 4 ~~~~Ls~~ei~~~L~~L~~~gW~~~~~~------~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~ 61 (104)
T 3hxa_A 4 KAHRLSAEERDQLLPNLRAVGWNELEGR------DAIFKQFHFKDFNRAFGFMSRVALQAEKLD 61 (104)
T ss_dssp -CCCCCHHHHHHHSHHHHTTTCEECSSS------SCEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHhhCCCCCCEEecCC------CeEEEEEEeCCHHHHHHHHHHHHHHHHHhC
Confidence 3567899999999999987889876432 355553322223455555556666666643
No 37
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=20.36 E-value=64 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 031222 133 SAAEAVEEFIGIIMNIKMEF 152 (163)
Q Consensus 133 RAAeAvEeFgGiL~sLrmei 152 (163)
-.||+|+-|..+.++||+.+
T Consensus 9 ~IAe~v~~FIT~mDaLKLn~ 28 (102)
T 2j9w_A 9 CIADIVSLFITVMDKLRLEI 28 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 46999999999999999874
No 38
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.29 E-value=95 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 031222 133 SAAEAVEEFIGIIMNIKMEFDDE 155 (163)
Q Consensus 133 RAAeAvEeFgGiL~sLrmeiDDl 155 (163)
+-+++..+-..-|..|+-+||+|
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667777778899999999987
No 39
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=20.24 E-value=80 Score=23.69 Aligned_cols=44 Identities=9% Similarity=0.252 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHH
Q 031222 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133 (163)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfR 133 (163)
|+++-.++.+++-.+|.++=+.+.-...+++++ .=++++.++|+
T Consensus 167 ~~~L~~~~n~~iN~nw~~i~~e~~p~i~~~~~~-----~~~~i~n~if~ 210 (220)
T 3e8t_A 167 NKELSDTMLTFLNQNWKQVSEEFGKPVMEAAAK-----KIFKNIKHFLA 210 (220)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 899999999999999977555554444444443 44555555554
No 40
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=20.22 E-value=91 Score=26.82 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=46.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc---ccCCCch----hHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031222 76 DVAHMPVIRDPEIQRAFKDLMAA---DWGELPA----SVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (163)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa---sW~elp~----svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sL 148 (163)
-+.++|..+..++..|++..-++ .|..+|. .++..+...|.++.|+.+--..+..=--..||..|....+..|
T Consensus 44 ~i~~~~~~~~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l 123 (501)
T 1uxt_A 44 TIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRL 123 (501)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45678888888899888877765 6999985 4566667777777776654333332222223333444455555
Q ss_pred h
Q 031222 149 K 149 (163)
Q Consensus 149 r 149 (163)
|
T Consensus 124 ~ 124 (501)
T 1uxt_A 124 R 124 (501)
T ss_dssp H
T ss_pred H
Confidence 4
Done!