Query 031222
Match_columns 163
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 17:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031222.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031222hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rbli_ d.73.1.1 (I:) Ribulose 70.5 1.5 0.00011 31.0 3.0 51 69-120 7-83 (109)
2 d2fnaa1 a.4.5.11 (A:284-356) H 50.3 4.2 0.00031 26.9 2.2 30 82-111 35-71 (73)
3 d1svdm1 d.73.1.1 (M:3-110) Rib 47.2 6.2 0.00045 27.6 2.8 49 71-120 9-83 (108)
4 d1wdds_ d.73.1.1 (S:) Ribulose 41.8 8.1 0.00059 27.5 2.8 26 75-100 13-38 (122)
5 d2j9ua1 a.24.28.1 (A:148-241) 36.7 9.7 0.00071 26.1 2.4 20 133-152 5-24 (94)
6 d1o04a_ c.82.1.1 (A:) Aldehyde 36.0 6.3 0.00046 31.5 1.5 86 75-160 40-135 (494)
7 d1o6ba_ c.26.1.3 (A:) Phosphop 34.3 21 0.0015 22.5 3.7 39 80-120 123-162 (163)
8 d1bxni_ d.73.1.1 (I:) Ribulose 31.6 15 0.0011 26.1 2.9 45 76-120 7-77 (129)
9 d1li5a1 a.27.1.1 (A:316-402) C 30.8 55 0.004 20.1 6.1 13 150-162 70-82 (87)
10 d1rrqa1 a.96.1.2 (A:9-229) Cat 30.8 7.3 0.00053 28.3 1.0 72 83-160 41-114 (221)
11 d1keaa_ a.96.1.2 (A:) Thymine- 30.3 6.6 0.00048 28.7 0.7 73 82-160 45-120 (217)
12 d2abka_ a.96.1.1 (A:) Endonucl 30.2 5.7 0.00041 29.0 0.3 90 55-155 22-114 (211)
13 d1ky8a_ c.82.1.1 (A:) Non-phos 29.3 19 0.0014 28.4 3.4 79 75-153 41-126 (499)
14 d1bwvs_ d.73.1.1 (S:) Ribulose 27.1 22 0.0016 25.6 3.1 45 76-120 7-77 (138)
15 d1gk8i_ d.73.1.1 (I:) Ribulose 26.2 21 0.0015 25.7 2.8 27 75-101 13-39 (126)
16 d1zoda1 c.67.1.4 (A:3-433) Dia 25.8 96 0.007 23.4 6.9 60 76-139 54-124 (431)
17 d1orna_ a.96.1.1 (A:) Endonucl 25.4 7.9 0.00058 28.1 0.3 72 84-158 44-118 (214)
18 d1a4sa_ c.82.1.1 (A:) Aldehyde 22.3 38 0.0028 26.8 4.0 55 75-129 47-107 (503)
19 d1szaa_ a.118.9.4 (A:) PCF11 p 22.2 44 0.0032 22.5 3.8 36 83-119 96-139 (144)
20 d1htaa_ a.22.1.2 (A:) Archaeal 22.1 74 0.0054 18.7 5.1 41 101-147 2-42 (68)
21 d1szqa_ e.44.1.1 (A:) 2-methyl 21.9 33 0.0024 26.9 3.5 19 97-115 13-31 (473)
22 d1ez0a_ c.82.1.1 (A:) Aldehyde 21.2 21 0.0015 28.4 2.2 69 79-147 19-103 (504)
23 d1qlsa_ a.39.1.2 (A:) Calcycli 20.8 83 0.0061 20.4 4.9 54 89-142 30-89 (95)
24 d1k8ua_ a.39.1.2 (A:) Calcycli 20.8 51 0.0037 20.7 3.7 53 89-141 30-86 (89)
25 d2pq6a1 c.87.1.10 (A:8-480) (I 20.8 48 0.0035 23.1 3.8 22 120-141 431-452 (473)
26 d2a7ka1 c.14.1.3 (A:1-230) Car 20.5 33 0.0024 24.2 2.9 50 84-139 180-229 (230)
No 1
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=70.48 E-value=1.5 Score=30.96 Aligned_cols=51 Identities=22% Similarity=0.450 Sum_probs=39.7
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccCC
Q 031222 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNND 120 (163)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~akkalSk~tD 120 (163)
..|.| |+.+-||+++|.+|.+-...|++-.| . .|| +.|+.+.+.|++...+
T Consensus 7 ~~~~~-eTfSyLP~Ltd~~I~~QV~yll~qGw~i~iE~ad~~~~~~~yW~mwklPmf~~~d~~~Vl~ele~c~~~~p~ 83 (109)
T d1rbli_ 7 KERRF-ETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGD 83 (109)
T ss_dssp CCCCC-STTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTT
T ss_pred CCccc-cccccCCCCCHHHHHHHHHHHHhCCCceeEEEccCCCccceeeeecccCcccCCCHHHHHHHHHHHHHhCCc
Confidence 34667 69999999999999999999998654 4 666 4577777777776544
No 2
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=50.26 E-value=4.2 Score=26.87 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHccc-------CCCchhHHHHH
Q 031222 82 VIRDPEIQRAFKDLMAADW-------GELPASVIHDA 111 (163)
Q Consensus 82 ~i~Dpei~~afKdLmAasW-------~elp~svv~~a 111 (163)
.|.|+.+.+.++.|+--+| +.|||.|+..|
T Consensus 35 ~I~d~~ls~lL~nL~k~~~iek~~~~Y~i~DPv~~~a 71 (73)
T d2fnaa1 35 EISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCceeecCCeeccCcHHHHHh
Confidence 5889999999999999999 45788887654
No 3
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=47.24 E-value=6.2 Score=27.57 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=37.6
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC-------------------CCc-------hhHHHHHHhhhcccCC
Q 031222 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG-------------------ELP-------ASVIHDAKSALSRNND 120 (163)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~-------------------elp-------~svv~~akkalSk~tD 120 (163)
+.| |+.+-||+++|-+|.+-...|++-.|. .|| +.|+.+++.|++...+
T Consensus 9 ~~~-eTfSyLP~Ltde~I~~QV~yll~qGw~~~~E~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~c~~~~p~ 83 (108)
T d1svdm1 9 LKY-ETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPT 83 (108)
T ss_dssp CCC-STTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHHCCCEeeEeecccCCCcCceeeecCCCCcCCCcHHHHHHHHHHHHHHCCC
Confidence 445 488999999999999999999987653 454 5677777777765443
No 4
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=41.85 E-value=8.1 Score=27.55 Aligned_cols=26 Identities=15% Similarity=0.512 Sum_probs=24.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHccc
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAADW 100 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW 100 (163)
|+.|-||+++|-+|.+-..-|++--|
T Consensus 13 ETfSyLP~ltd~qI~~QI~yll~qGw 38 (122)
T d1wdds_ 13 ETLSYLPPLTVEDLLKQIEYLLRSKW 38 (122)
T ss_dssp STTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred eeeccCCCCCHHHHHHHHHHHHHCCC
Confidence 58899999999999999999999877
No 5
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.68 E-value=9.7 Score=26.11 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 031222 133 SAAEAVEEFIGIIMNIKMEF 152 (163)
Q Consensus 133 RAAeAvEeFgGiL~sLrmei 152 (163)
-.||+++-|..++++||+.+
T Consensus 5 ~Vae~~~~FIT~mDaLkL~~ 24 (94)
T d2j9ua1 5 YVAEATGNFITVMDALKLNY 24 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 35899999999999999865
No 6
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=36.04 E-value=6.3 Score=31.47 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=58.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----ccCCCchh----HHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA-----DWGELPAS----VIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGI 144 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----sW~elp~s----vv~~akkalSk~tDDkAGqeaLknvfRAAeA-vEeFgGi 144 (163)
+.+..+|.-+..||..|++.--++ .|..+|.. ++..+...|.++.|+.+--+.+..=---.++ .+|....
T Consensus 40 ~~i~~v~~a~~~dv~~Av~aA~~Af~~~~~W~~~~~~eRa~iL~~~a~~l~~~~eela~~~~~E~GK~~~ea~~~ev~~~ 119 (494)
T d1o04a_ 40 EVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMV 119 (494)
T ss_dssp EEEEEEECBCHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHhccchhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcchhhhhhhHHHHH
Confidence 456778889999999988765554 59999975 8888888899888887766665542222333 3456666
Q ss_pred HHHHhhhhhhhccCCC
Q 031222 145 IMNIKMEFDDEIGLSG 160 (163)
Q Consensus 145 L~sLrmeiDDl~GlSG 160 (163)
+..++.-.+..-.+.|
T Consensus 120 ~~~~~~~a~~~~~~~~ 135 (494)
T d1o04a_ 120 LKCLRYYAGWADKYHG 135 (494)
T ss_dssp HHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6666655555444443
No 7
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=34.27 E-value=21 Score=22.50 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHcccCC-CchhHHHHHHhhhcccCC
Q 031222 80 MPVIRDPEIQRAFKDLMAADWGE-LPASVIHDAKSALSRNND 120 (163)
Q Consensus 80 lP~i~Dpei~~afKdLmAasW~e-lp~svv~~akkalSk~tD 120 (163)
...||--+|++.++ ...+|.. +|++|.+..|+...++++
T Consensus 123 ~~~ISST~IR~~i~--~g~~i~~lVP~~V~~yI~e~~~~~~~ 162 (163)
T d1o6ba_ 123 YSFLSSSIVKEVAR--YDGSVSEFVPPEVELALQQKFRQGGS 162 (163)
T ss_dssp TTTCCHHHHHHHHH--TTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred hhccCHHHHHHHHH--cCCChHHhCCHHHHHHHHHHHhccCC
Confidence 45688899998775 3667888 599999999988887653
No 8
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=31.64 E-value=15 Score=26.14 Aligned_cols=45 Identities=16% Similarity=0.393 Sum_probs=35.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CC-------chhHHHHHHhhhcccCC
Q 031222 76 DVAHMPVIRDPEIQRAFKDLMAADW-----------------G--EL-------PASVIHDAKSALSRNND 120 (163)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW-----------------~--el-------p~svv~~akkalSk~tD 120 (163)
..+-||+++|-+|.+-+..|++-.| . .| +..|+.+++.|++...+
T Consensus 7 tfSyLP~Ltd~~I~~QV~yll~qG~~i~iE~ad~r~~r~~yW~mw~lPmf~~~d~~~Vl~ele~c~~e~p~ 77 (129)
T d1bxni_ 7 TFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPN 77 (129)
T ss_dssp BTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSS
T ss_pred eeccCCCCCHHHHHHHHHHHHHCCCEeeEEEecCcCcccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 4568999999999999999998755 3 55 36788888888876554
No 9
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=30.82 E-value=55 Score=20.09 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=9.7
Q ss_pred hhhhhhccCCCCC
Q 031222 150 MEFDDEIGLSGEV 162 (163)
Q Consensus 150 meiDDl~GlSGEn 162 (163)
.++.+++|+-+++
T Consensus 70 ~~~~~vLGll~~~ 82 (87)
T d1li5a1 70 RKLSAVLGLLEQE 82 (87)
T ss_dssp HHHHTTTTCSCSC
T ss_pred HHHHhHcCCCCCC
Confidence 4678888987764
No 10
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.78 E-value=7.3 Score=28.32 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 031222 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSG 160 (163)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~sLrmeiDDl~GlSG 160 (163)
-+|.-+.++++.|+.. +|..|-..-..+.++.+...+=-. .+..-.=.+.+.+++|+|.+-. ..++|+.|-|
T Consensus 41 T~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~~~G~~~---ra~~l~~~~~~~~~~~~G~vp~---~~~~Ll~LpG 114 (221)
T d1rrqa1 41 TRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYS---RVRNLHAAVKEVKTRYGGKVPD---DPDEFSRLKG 114 (221)
T ss_dssp SCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHHTTSSCTH---HHHHHHHHHHHHHHHHTTCCCC---SHHHHHTSTT
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHhhcHHHHHhhhccchhhh---hhHHHHHHHHHHhhhcCCCCch---HHHHHHHHHH
Confidence 3688899999999884 343333333455666666543322 2333333467888999996544 4455665555
No 11
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=30.25 E-value=6.6 Score=28.72 Aligned_cols=73 Identities=5% Similarity=0.164 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccC
Q 031222 82 VIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIMNIKMEFDDEIGL 158 (163)
Q Consensus 82 ~i~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeA-vEeFgGiL~sLrmeiDDl~Gl 158 (163)
--+|..+..+++.|+.. +|..|-..=..++++.+...+=- ..--++..++|+. +|+|||.+-.-+ ++|+.|
T Consensus 45 qT~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~---~~KA~~l~~~a~~i~~~~~g~~p~~~---~~L~~L 118 (217)
T d1keaa_ 45 RTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLS---NQRAEQLKELARVVINDYGGRVPRNR---KAILDL 118 (217)
T ss_dssp TSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCH---HHHHHHHHHHHHHHHHHHTTSCCSCH---HHHHTS
T ss_pred cCcHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhccCCcchhh---HHHHHH
Confidence 34788999999999875 33333333345666666653311 2244667787875 567899655444 445555
Q ss_pred CC
Q 031222 159 SG 160 (163)
Q Consensus 159 SG 160 (163)
-|
T Consensus 119 pG 120 (217)
T d1keaa_ 119 PG 120 (217)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 12
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=30.19 E-value=5.7 Score=28.98 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=54.4
Q ss_pred CCCCCCCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHH
Q 031222 55 IPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVF 132 (163)
Q Consensus 55 ~~~d~~~~~s~~~g~~R~fS~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvf 132 (163)
.+.+.++||-.=++-. . +.--+|.-+.++++.|+.. +|..|-..-+.+++++++..+=- ...-++..
T Consensus 22 ~~l~~~~p~~vli~~i--L------sqqT~~~~v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~y---~~Ka~~l~ 90 (211)
T d2abka_ 22 TELNFSSPFELLIAVL--L------SAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY---NSKAENII 90 (211)
T ss_dssp CSSCCSSHHHHHHHHH--H------TTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTH---HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH--H------hccchHHHHHHHHHHHHHhccChHHHHhhhHhHhHHHHHHhhhh---hhHHHHHH
Confidence 3445667876444321 1 2345788999999999874 44444444456677777763321 23446777
Q ss_pred HHHH-HHHHHHHHHHHHhhhhhhh
Q 031222 133 SAAE-AVEEFIGIIMNIKMEFDDE 155 (163)
Q Consensus 133 RAAe-AvEeFgGiL~sLrmeiDDl 155 (163)
++|+ -+++|||.+-..+.+|-.|
T Consensus 91 ~~a~~i~~~~~g~~p~~~~~L~~L 114 (211)
T d2abka_ 91 KTCRILLEQHNGEVPEDRAALEAL 114 (211)
T ss_dssp HHHHHHHHHTTTSCCSCHHHHHHS
T ss_pred HHHHHHHHHhcCchhHHHHHHHHH
Confidence 7777 5788999765544444333
No 13
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]}
Probab=29.32 E-value=19 Score=28.36 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=49.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc---ccCCCch----hHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAA---DWGELPA----SVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMN 147 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa---sW~elp~----svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~s 147 (163)
+-+.++|.....||..|++..-++ +|..+|. .+...+...|.++.|+.+--..++-=--..+|..|+...+..
T Consensus 41 ~~i~~v~~a~~~dv~~Av~~A~~a~~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~etGk~~~~a~~Ev~~~i~~ 120 (499)
T d1ky8a_ 41 ATIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDR 120 (499)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhhhhhccccc
Confidence 356678888888888877544322 6888887 467777777888777666554443222233444566666666
Q ss_pred Hhhhhh
Q 031222 148 IKMEFD 153 (163)
Q Consensus 148 LrmeiD 153 (163)
++-..+
T Consensus 121 ~~~~a~ 126 (499)
T d1ky8a_ 121 LRLAEL 126 (499)
T ss_dssp HHGGGG
T ss_pred ccchhh
Confidence 654433
No 14
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=27.11 E-value=22 Score=25.64 Aligned_cols=45 Identities=16% Similarity=0.412 Sum_probs=34.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHcccC-------------------CCc-------hhHHHHHHhhhcccCC
Q 031222 76 DVAHMPVIRDPEIQRAFKDLMAADWG-------------------ELP-------ASVIHDAKSALSRNND 120 (163)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW~-------------------elp-------~svv~~akkalSk~tD 120 (163)
..+-||+++|.+|.+-...|++-.|. .|| +.|+.+++.|++...+
T Consensus 7 tfSyLP~LtdeqI~~QV~yll~qGw~~~iE~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~ 77 (138)
T d1bwvs_ 7 TFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSN 77 (138)
T ss_dssp TTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTT
T ss_pred eeccCCCCCHHHHHHHHHHHHcCCCEeeeEeccccccccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 56689999999999999999987663 554 5677777777765443
No 15
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.19 E-value=21 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=25.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHcccC
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMAADWG 101 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (163)
|+.|-||+++|-+|.+-..=++.-.|.
T Consensus 13 ETfSyLPpLtdeqI~kQI~Y~i~~GW~ 39 (126)
T d1gk8i_ 13 ETFSYLPPLTDEQIAAQVDYIVANGWI 39 (126)
T ss_dssp STTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred eecccCCCCCHHHHHHHHHHHHhcCCc
Confidence 589999999999999999999999985
No 16
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}
Probab=25.82 E-value=96 Score=23.37 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccc----CCCchhHHHHHHhhhccc--CCc-----hhHHHHHHHHHHHHHHHH
Q 031222 76 DVAHMPVIRDPEIQRAFKDLMAADW----GELPASVIHDAKSALSRN--NDD-----KAGQEVLKNVFSAAEAVE 139 (163)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW----~elp~svv~~akkalSk~--tDD-----kAGqeaLknvfRAAeAvE 139 (163)
.++| .+|+|.+|+++-+..-+ .-+.+..++-|++-+... .-| ..|-||.+++.|.|++.-
T Consensus 54 ~lGh----~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t 124 (431)
T d1zoda1 54 VLGH----CHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT 124 (431)
T ss_dssp TTCB----TCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcC----CCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhc
Confidence 5566 58999999999887544 234566667777655432 223 469999999999999874
No 17
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=25.42 E-value=7.9 Score=28.08 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccC
Q 031222 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIMNIKMEFDDEIGL 158 (163)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeA-vEeFgGiL~sLrmeiDDl~Gl 158 (163)
+|.-+.++++.|+.. +|.++-..-..+.++.+...+= .....+|..++|+- +|+|||.+-.-+.+|-.|=|.
T Consensus 44 ~~~~v~~~~~~l~~~~pt~~~la~~~~~e~~~~i~~~g~---y~~ka~~l~~~a~~i~~~~~g~vp~~~~~L~~LpGV 118 (214)
T d1orna_ 44 TDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGL---YRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGV 118 (214)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSS---HHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTC
T ss_pred hHHHHHHHHhhhhcccCchhhhhhccHHHhhhhhhhhhh---hhHHHHHHHHHhhhHHHHhCCCCCCCHHHHHhCcCc
No 18
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]}
Probab=22.29 E-value=38 Score=26.83 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=39.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHH--cccCCCchh----HHHHHHhhhcccCCchhHHHHHH
Q 031222 75 EDVAHMPVIRDPEIQRAFKDLMA--ADWGELPAS----VIHDAKSALSRNNDDKAGQEVLK 129 (163)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmA--asW~elp~s----vv~~akkalSk~tDDkAGqeaLk 129 (163)
+-+.++|..+..||..|+..--+ ..|..+|.. ++..+...|.++.|+.+-...+.
T Consensus 47 e~i~~v~~a~~~dV~~AV~aA~~A~~~W~~~s~~eR~~iL~~~a~~L~~~~eela~~~~~e 107 (503)
T d1a4sa_ 47 RVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVIN 107 (503)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 34567899988899888765554 369999875 67777788888877766644433
No 19
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.17 E-value=44 Score=22.49 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHcccCC--------CchhHHHHHHhhhcccC
Q 031222 83 IRDPEIQRAFKDLMAADWGE--------LPASVIHDAKSALSRNN 119 (163)
Q Consensus 83 i~Dpei~~afKdLmAasW~e--------lp~svv~~akkalSk~t 119 (163)
.-|++++..+..|+.+ |.+ .|.++++..++.|.|+.
T Consensus 96 ~~~~~~r~kl~rll~i-W~~r~~~~~~vFp~~~l~~ie~~L~~a~ 139 (144)
T d1szaa_ 96 LVDNTTRTKLINMFKL-WLNPNDTGLPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp TSCHHHHHHHHHHHHH-HSSGGGCSSCSSCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHH-HhccCCCCcCCCCHHHHHHHHHHHHHhH
Confidence 4589999999998875 655 99999999999998753
No 20
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=22.08 E-value=74 Score=18.66 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=26.6
Q ss_pred CCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031222 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMN 147 (163)
Q Consensus 101 ~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvEeFgGiL~s 147 (163)
.|||-+.|...=+ ..+..+..+|++.-+ ++++|+|-.-|..
T Consensus 2 aeLP~a~I~ri~k---~~~~~ris~ea~~~l---~~~~e~fi~~l~~ 42 (68)
T d1htaa_ 2 GELPIAPIGRIIK---NAGAERVSDDARIAL---AKVLEEMGEEIAS 42 (68)
T ss_dssp CCSCHHHHHHHHH---HTTCSCCCHHHHHHH---HHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHH---HCCcchhhHHHHHHH---HHHHHHHHHHHHH
Confidence 4688877744322 235567888887654 6778888775543
No 21
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia coli [TaxId: 562]}
Probab=21.91 E-value=33 Score=26.88 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=16.9
Q ss_pred HcccCCCchhHHHHHHhhh
Q 031222 97 AADWGELPASVIHDAKSAL 115 (163)
Q Consensus 97 AasW~elp~svv~~akkal 115 (163)
+.+|+.||+.|++.+|.++
T Consensus 13 ~~~~~~~~~~v~~~ak~~i 31 (473)
T d1szqa_ 13 VMNYEISSKVAYDTAHYCL 31 (473)
T ss_dssp HHHCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHH
Confidence 4689999999999999876
No 22
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]}
Probab=21.24 E-value=21 Score=28.44 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHc--ccCCCchhH----HHHHHhhhcccCCchhHHHHH----------HHHHHHHHHHHHHH
Q 031222 79 HMPVIRDPEIQRAFKDLMAA--DWGELPASV----IHDAKSALSRNNDDKAGQEVL----------KNVFSAAEAVEEFI 142 (163)
Q Consensus 79 hlP~i~Dpei~~afKdLmAa--sW~elp~sv----v~~akkalSk~tDDkAGqeaL----------knvfRAAeAvEeFg 142 (163)
.+|.-+..||..|+..--.+ .|.++|..- +..+...|.++.|+.+.-..+ .+|-++++-++.|.
T Consensus 19 ~~~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gkp~~~a~~Ev~~~~~~~~~~a 98 (504)
T d1ez0a_ 19 AFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFA 98 (504)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 57777878888877765544 699999754 666677777777776654433 34555555555555
Q ss_pred HHHHH
Q 031222 143 GIIMN 147 (163)
Q Consensus 143 GiL~s 147 (163)
+.+..
T Consensus 99 ~~~~~ 103 (504)
T d1ez0a_ 99 DVVNS 103 (504)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 54443
No 23
>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}
Probab=20.80 E-value=83 Score=20.37 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHccc-----CCCchhHHHHHHhhhcccCCchhH-HHHHHHHHHHHHHHHHHH
Q 031222 89 QRAFKDLMAADW-----GELPASVIHDAKSALSRNNDDKAG-QEVLKNVFSAAEAVEEFI 142 (163)
Q Consensus 89 ~~afKdLmAasW-----~elp~svv~~akkalSk~tDDkAG-qeaLknvfRAAeAvEeFg 142 (163)
++-||+||-..- ..-++..+...-+.|-+|+|++.+ +|=+.=|++.|-||-+|.
T Consensus 30 k~Elk~Ll~~El~~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~li~~la~~ch~~~ 89 (95)
T d1qlsa_ 30 KTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAIACHDSF 89 (95)
T ss_dssp HHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 455777775411 122445577888889999998877 778888999999998874
No 24
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=20.79 E-value=51 Score=20.71 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHc---ccCCCchhHHHHHHhhhcccCCchhH-HHHHHHHHHHHHHHHHH
Q 031222 89 QRAFKDLMAA---DWGELPASVIHDAKSALSRNNDDKAG-QEVLKNVFSAAEAVEEF 141 (163)
Q Consensus 89 ~~afKdLmAa---sW~elp~svv~~akkalSk~tDDkAG-qeaLknvfRAAeAvEeF 141 (163)
+.-||.||.. ....+.+..+...=+.+-+|+|++.. +|=+.-+.+.|.+|-++
T Consensus 30 ~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d~Dg~IdF~EF~~l~~~la~~c~~~ 86 (89)
T d1k8ua_ 30 KKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEA 86 (89)
T ss_dssp HHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4456666654 55666667777777888888888776 56777788888877554
No 25
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=20.77 E-value=48 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 031222 120 DDKAGQEVLKNVFSAAEAVEEF 141 (163)
Q Consensus 120 DDkAGqeaLknvfRAAeAvEeF 141 (163)
+|..|++.-+|+=+..+.+++-
T Consensus 431 ~d~~~~~~r~~a~~l~~~~~~a 452 (473)
T d2pq6a1 431 AGDKGKKMKQKAMELKKKAEEN 452 (473)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHH
Confidence 3444566666665555555543
No 26
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}
Probab=20.54 E-value=33 Score=24.17 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHH
Q 031222 84 RDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVE 139 (163)
Q Consensus 84 ~Dpei~~afKdLmAasW~elp~svv~~akkalSk~tDDkAGqeaLknvfRAAeAvE 139 (163)
.+.+++....++ |..+...|+..+...|+.|.+ .-.+.|+..+.+.+|++
T Consensus 180 ~~~~l~~~a~~~-a~~ia~~~~~a~~~~K~~l~~-----~~~~~l~~~~~~~~a~~ 229 (230)
T d2a7ka1 180 ESSALLDAAITQ-AHVMASYPASAFINTKRAVNK-----PFIHLLEQTRDASKAVH 229 (230)
T ss_dssp CHHHHHHHHHHH-HHHHHTSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH-----HHhccHHHHHHHHHHhC
Confidence 356666666664 677888999999999999865 44556667777777764
Done!