BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031223
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDS 84
++IDNYDSF YN+ Q +GELG + V RNDE++++ ++R +P ++ISPGPG P +D
Sbjct: 5 LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI 64
Query: 85 GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
G+SL + LG P+ GVC+G Q IG AFG KI R V HGK S + L
Sbjct: 65 GVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI-RRARKVFHGKISNIILVNNSPLSLY 123
Query: 145 AGLSKYVSISCYN 157
G++K + Y+
Sbjct: 124 YGIAKEFKATRYH 136
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 83/134 (61%), Gaps = 7/134 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
I+++DN DSFTYNL + G+ +YRN E+ +E L+ +++SPGPG P +
Sbjct: 4 ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 84 SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
+G + + L +P+ G+C+G Q I EA+GG++ ++ ++HGK+S + +D GE G+
Sbjct: 64 AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHD--GE-GM 119
Query: 144 LAGLSKYVSISCYN 157
AG++ + ++ Y+
Sbjct: 120 FAGMANPLPVARYH 133
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 82/135 (60%), Gaps = 9/135 (6%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQ 82
I+++DN DSFT+NL + G++ +YRN + ++ L KNP +++SPGPG P
Sbjct: 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPS 61
Query: 83 DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 142
++G + + L +P+ G+C+G Q I EA+GG + ++ ++HGK++ + +D +
Sbjct: 62 EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEHDGQ---A 117
Query: 143 LLAGLSKYVSISCYN 157
+ AGL+ + ++ Y+
Sbjct: 118 MFAGLANPLPVARYH 132
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP- 81
+K+ I+++D +T + + + ELG + E++ D +T +++ NP G+++S GP +
Sbjct: 6 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT 64
Query: 82 -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 118
++S + Q V E G VP+FGVC G+Q + GG +
Sbjct: 65 EENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGGHV 100
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I+++DN + + + + + LG ++ N +EE+K NP+G++ S GP +++G
Sbjct: 23 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 79
Query: 87 SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVR 120
+ + VLE VP+ G+C+G Q I + FGGK+ R
Sbjct: 80 NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGR 115
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I+++DN + + + + + LG ++ N +EE+K NP+G++ S GP +++G
Sbjct: 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 59
Query: 87 SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVR 120
+ + VLE VP+ G+C+G Q I + FGGK+ R
Sbjct: 60 NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGR 95
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
G K V+ G HG + V EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
G K V+ G HG + V EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
G K V+ G HG + V EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
G K V+ G HG + V EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 221 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 278
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
G K V+ G HG + V EK
Sbjct: 279 GAKTVKMKFG-HHGGNHPVKDVEK 301
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
G K V+ G HG + V EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
++V+D +T + + + EL F + + +EE+ + P+ +++S GP + D
Sbjct: 2 VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
+PL G+C G+Q + + GG++ R+
Sbjct: 61 PRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA 95
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ 82
+++ I+++D + + + + E+G + E+ D + E ++ NP G+++S GP
Sbjct: 9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVT 67
Query: 83 DSGISLQT---VLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
S +L+ + E+G P+ G+C G+Q + GGK+ R+
Sbjct: 68 LSH-TLRAPAFIFEIG--CPVLGICYGMQTMAYQLGGKVNRT 106
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
++V+D +T + + + EL F + + +EE+ + P+ +++S GP + D
Sbjct: 2 VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
+PL G+C G Q + + GG++ R+
Sbjct: 61 PRPDPRLFSSGLPLLGICYGXQLLAQELGGRVERA 95
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 59 LTVEELKRKNPRGVLISPGPGAPQDSGIS--LQTVLE--LGPTVPLFGVCMGLQCIGEAF 114
+ ++++K N +GV++S GP + ++G + V E L +P+FG+C G+Q I
Sbjct: 41 VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQM 100
Query: 115 GGKIVRS 121
G++ +S
Sbjct: 101 NGEVKKS 107
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 35.4 bits (80), Expect = 0.013, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS 87
+++D D FT + Q + LG EV + +L R + V++ PGPG P D+G
Sbjct: 450 LIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV--DLARYDV--VVMGPGPGDPSDAGDP 505
Query: 88 --------LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120
L+ +++ G P VC+ Q + G +VR
Sbjct: 506 RIARLYAWLRHLIDEGK--PFMAVCLSHQILNAILGIPLVR 544
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 51 FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCM 105
F+V R D + ++ G+ GP + D T+L L VP+ G C+
Sbjct: 31 FQVLRXDRSDPLPAEIRDCSGLAXXGGPXSANDDLPWXPTLLALIRDAVAQRVPVIGHCL 90
Query: 106 GLQCIGEAFGGKIVRSP 122
G Q + +A GG++ SP
Sbjct: 91 GGQLLAKAXGGEVTDSP 107
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 64 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 118
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG +
Sbjct: 63 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTV 117
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I V+DN +T+ + + ELG ++ ND ++ + G+++S G +
Sbjct: 16 IYVVDNGGQWTHREWRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELD 72
Query: 87 SLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRS 121
L +V + P+ G+C+G Q I FG +V++
Sbjct: 73 KLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKA 109
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 64 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 118
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG +
Sbjct: 68 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTV 122
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
+++D D FT + Q + LG EV + +L R + V++ PGPG P D+G
Sbjct: 450 LIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV--DLARYDV--VVMGPGPGDPSDAG 503
>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e
Protein
Length = 109
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92
L +M ++GYH +YR L PR L G + +D GI++ TVL
Sbjct: 49 LLDWMMKVGYHKSLYR--------LSTSFPRRALEVEGGSSLEDIGITVDTVL 93
>pdb|3D46|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D47|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
Length = 405
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 62 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 117
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 264 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 319
Query: 118 IVRSPLGVMHGKS 130
R L V HG S
Sbjct: 320 KSRGQLVVPHGSS 332
>pdb|2GSH|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2GSH|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
Length = 414
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 62 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 117
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 265 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 320
Query: 118 IVRSPLGVMHGKS 130
R L V HG S
Sbjct: 321 KSRGQLVVPHGSS 333
>pdb|2P3Z|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2P3Z|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|3BOX|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3BOX|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3CXO|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
pdb|3CXO|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
Length = 415
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 62 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 117
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 266 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 321
Query: 118 IVRSPLGVMHGKS 130
R L V HG S
Sbjct: 322 KSRGQLVVPHGSS 334
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
N+ I+V+D++ L +G LGY + ND + + KN +++S P
Sbjct: 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTA-NDGVDALNVLSKNHIDIVLS-DVNMP 184
Query: 82 QDSGISL-QTVLELGPTVPLFGV 103
G L Q + +LG T+P+ GV
Sbjct: 185 NMDGYRLTQRIRQLGLTLPVIGV 207
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
N+ I+V+D++ L +G LGY + ND + + KN +++S P
Sbjct: 6 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTA-NDGVDALNVLSKNHIDIVLS-DVNMP 63
Query: 82 QDSGISL-QTVLELGPTVPLFGV 103
G L Q + +LG T+P+ GV
Sbjct: 64 NMDGYRLTQRIRQLGLTLPVIGV 86
>pdb|3L7N|A Chain A, Crystal Structure Of Smu.1228c
Length = 236
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 100 LFGVCMGLQCIGEAFGGKIVRSP 122
+ GVC+G Q +G A+G + SP
Sbjct: 87 IVGVCLGAQLMGVAYGADYLHSP 109
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
+++ID + ++ + LGY + R+ ++ + K L PG G ++
Sbjct: 5 VVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADK-------LFLPGVGTASEAXK 57
Query: 87 SL--QTVLELGPTV--PLFGVCMGLQCIGE 112
+L + ++EL V PL G+C+G Q +G+
Sbjct: 58 NLTERDLIELVKRVEKPLLGICLGXQLLGK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,018,923
Number of Sequences: 62578
Number of extensions: 217299
Number of successful extensions: 620
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 33
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)