Query 031223
Match_columns 163
No_of_seqs 192 out of 1486
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0512 PabA Anthranilate/para 100.0 4.9E-35 1.1E-39 220.8 15.6 134 25-162 2-135 (191)
2 PRK08007 para-aminobenzoate sy 100.0 3.5E-34 7.7E-39 218.7 15.4 133 26-162 1-133 (187)
3 PRK06774 para-aminobenzoate sy 100.0 1.2E-33 2.6E-38 216.2 15.4 132 26-161 1-132 (191)
4 PLN02335 anthranilate synthase 100.0 2E-33 4.4E-38 219.8 16.5 144 19-162 13-156 (222)
5 PRK07649 para-aminobenzoate/an 100.0 1.5E-33 3.3E-38 216.5 15.4 132 26-161 1-132 (195)
6 TIGR00566 trpG_papA glutamine 100.0 2.2E-32 4.9E-37 208.9 16.2 132 26-161 1-132 (188)
7 CHL00101 trpG anthranilate syn 100.0 1.9E-32 4E-37 209.6 14.6 133 26-162 1-133 (190)
8 PRK06895 putative anthranilate 100.0 2.6E-32 5.6E-37 208.7 15.3 133 25-162 2-134 (190)
9 PRK08857 para-aminobenzoate sy 100.0 5.4E-32 1.2E-36 207.5 15.8 133 26-162 1-133 (193)
10 PRK05670 anthranilate synthase 100.0 4.3E-32 9.3E-37 207.3 15.1 133 26-162 1-133 (189)
11 PRK05637 anthranilate synthase 100.0 2.3E-30 5E-35 200.7 14.9 135 25-162 2-149 (208)
12 COG0518 GuaA GMP synthase - Gl 100.0 7.8E-30 1.7E-34 196.1 14.2 134 25-162 2-142 (198)
13 cd01743 GATase1_Anthranilate_S 100.0 4.2E-29 9.1E-34 189.8 15.7 132 27-162 1-132 (184)
14 PRK07765 para-aminobenzoate sy 100.0 7.9E-29 1.7E-33 192.9 15.6 133 25-161 1-136 (214)
15 PRK09522 bifunctional glutamin 100.0 2E-28 4.2E-33 212.0 15.2 134 25-162 2-138 (531)
16 KOG0026 Anthranilate synthase, 100.0 8.1E-28 1.8E-32 177.2 14.5 137 25-161 19-156 (223)
17 TIGR00888 guaA_Nterm GMP synth 100.0 1E-27 2.2E-32 182.9 15.2 130 27-162 1-131 (188)
18 PF00117 GATase: Glutamine ami 100.0 3.2E-28 6.9E-33 185.5 10.8 132 28-162 1-135 (192)
19 PRK14607 bifunctional glutamin 100.0 1.5E-27 3.3E-32 207.0 14.1 132 26-161 1-133 (534)
20 cd01742 GATase1_GMP_Synthase T 99.9 2.6E-27 5.6E-32 179.2 13.2 129 27-162 1-131 (181)
21 PRK00758 GMP synthase subunit 99.9 5E-27 1.1E-31 178.5 13.9 127 26-162 1-128 (184)
22 PLN02889 oxo-acid-lyase/anthra 99.9 6.3E-27 1.4E-31 210.9 14.6 133 25-162 82-227 (918)
23 PLN02347 GMP synthetase 99.9 1.7E-26 3.7E-31 200.0 16.7 132 25-161 11-148 (536)
24 TIGR01815 TrpE-clade3 anthrani 99.9 1.2E-26 2.6E-31 206.3 16.2 136 21-161 513-649 (717)
25 PRK13566 anthranilate synthase 99.9 2.6E-26 5.6E-31 204.4 16.4 137 20-161 522-659 (720)
26 PRK00074 guaA GMP synthase; Re 99.9 3.4E-26 7.4E-31 197.7 15.6 132 24-162 3-136 (511)
27 PRK07053 glutamine amidotransf 99.9 1E-25 2.2E-30 177.6 14.7 137 24-163 2-147 (234)
28 PRK06490 glutamine amidotransf 99.9 5.9E-25 1.3E-29 173.7 14.0 133 23-162 6-147 (239)
29 PRK08250 glutamine amidotransf 99.9 8.7E-25 1.9E-29 172.4 14.3 135 25-163 1-149 (235)
30 PRK05665 amidotransferase; Pro 99.9 2E-24 4.4E-29 170.7 15.0 135 24-162 2-153 (240)
31 TIGR01823 PabB-fungal aminodeo 99.9 4.4E-24 9.5E-29 191.0 15.8 136 22-162 3-146 (742)
32 PRK09065 glutamine amidotransf 99.9 1.8E-24 3.9E-29 170.8 11.3 126 33-161 20-152 (237)
33 PRK07567 glutamine amidotransf 99.9 5.4E-24 1.2E-28 168.5 12.8 134 27-162 4-157 (242)
34 cd01744 GATase1_CPSase Small c 99.9 1.6E-23 3.4E-28 158.7 13.6 122 27-161 1-123 (178)
35 COG0505 CarA Carbamoylphosphat 99.9 1.8E-23 3.8E-28 170.2 11.9 141 6-162 164-305 (368)
36 PLN02771 carbamoyl-phosphate s 99.9 2.8E-23 6.1E-28 174.0 13.4 124 25-161 241-364 (415)
37 cd01748 GATase1_IGP_Synthase T 99.9 1.9E-23 4.2E-28 160.5 11.4 126 27-162 1-150 (198)
38 PRK13170 hisH imidazole glycer 99.9 3.2E-23 6.9E-28 159.3 12.6 126 25-162 1-148 (196)
39 PRK13146 hisH imidazole glycer 99.9 4.6E-23 1E-27 159.9 12.1 129 25-162 2-157 (209)
40 PRK12564 carbamoyl phosphate s 99.9 2.2E-22 4.7E-27 167.1 14.4 126 24-162 177-303 (360)
41 PRK12838 carbamoyl phosphate s 99.9 2.2E-22 4.7E-27 166.7 13.9 124 24-161 167-291 (354)
42 cd01741 GATase1_1 Subgroup of 99.9 4E-22 8.6E-27 151.7 13.6 135 26-162 1-146 (188)
43 TIGR01368 CPSaseIIsmall carbam 99.9 2.6E-22 5.6E-27 166.4 13.3 125 25-162 174-298 (358)
44 PRK13181 hisH imidazole glycer 99.9 1.8E-22 4E-27 155.3 10.6 127 26-162 1-149 (199)
45 CHL00197 carA carbamoyl-phosph 99.9 9.1E-22 2E-26 164.2 14.1 106 24-133 192-298 (382)
46 PRK13152 hisH imidazole glycer 99.9 1E-21 2.2E-26 151.5 12.7 127 26-162 1-152 (201)
47 CHL00188 hisH imidazole glycer 99.9 8.3E-22 1.8E-26 153.0 12.3 129 25-161 2-157 (210)
48 TIGR01855 IMP_synth_hisH imida 99.9 6.6E-22 1.4E-26 152.0 11.0 126 27-162 1-147 (196)
49 COG0118 HisH Glutamine amidotr 99.9 1.9E-21 4E-26 148.0 13.0 128 25-162 2-152 (204)
50 KOG1622 GMP synthase [Nucleoti 99.9 3.6E-22 7.8E-27 166.1 8.4 137 19-162 11-151 (552)
51 PRK13141 hisH imidazole glycer 99.9 2.2E-21 4.8E-26 149.8 11.0 127 26-162 1-151 (205)
52 PRK14004 hisH imidazole glycer 99.8 1.7E-20 3.7E-25 145.7 13.0 127 27-161 2-157 (210)
53 PRK13143 hisH imidazole glycer 99.8 2.3E-20 5E-25 143.8 12.5 127 25-162 1-147 (200)
54 PRK13525 glutamine amidotransf 99.8 1.2E-19 2.6E-24 138.8 12.6 123 25-162 2-140 (189)
55 PRK13527 glutamine amidotransf 99.8 9.6E-20 2.1E-24 140.3 10.8 131 26-162 4-150 (200)
56 KOG1224 Para-aminobenzoate (PA 99.8 1.4E-18 3.1E-23 147.3 13.0 142 19-162 9-160 (767)
57 KOG3179 Predicted glutamine sy 99.8 5.9E-19 1.3E-23 134.0 9.4 137 22-161 2-158 (245)
58 PRK11366 puuD gamma-glutamyl-g 99.8 8.4E-18 1.8E-22 134.0 12.3 122 38-162 29-188 (254)
59 PLN02617 imidazole glycerol ph 99.8 1.8E-17 3.9E-22 143.8 13.8 128 23-161 5-156 (538)
60 PF07722 Peptidase_C26: Peptid 99.7 1.1E-16 2.4E-21 124.8 12.7 123 37-162 26-180 (217)
61 cd01745 GATase1_2 Subgroup of 99.7 1.9E-17 4.1E-22 126.5 8.1 88 33-121 17-124 (189)
62 cd01746 GATase1_CTP_Synthase T 99.7 5.2E-17 1.1E-21 128.1 9.3 127 31-161 14-175 (235)
63 cd01747 GATase1_Glutamyl_Hydro 99.7 9.2E-17 2E-21 129.3 10.5 125 37-162 22-166 (273)
64 COG2071 Predicted glutamine am 99.7 1.7E-16 3.7E-21 123.8 9.9 121 38-162 29-182 (243)
65 KOG0370 Multifunctional pyrimi 99.7 1.8E-16 3.9E-21 141.3 11.0 106 22-134 170-276 (1435)
66 TIGR00337 PyrG CTP synthase. C 99.7 3E-16 6.5E-21 134.9 11.6 114 5-122 270-397 (525)
67 TIGR01737 FGAM_synth_I phospho 99.7 1.8E-15 3.9E-20 118.8 14.3 127 25-159 1-143 (227)
68 PRK13142 hisH imidazole glycer 99.7 7E-16 1.5E-20 118.1 11.2 118 26-161 1-138 (192)
69 PRK05380 pyrG CTP synthetase; 99.7 2.4E-16 5.3E-21 135.6 9.5 114 5-119 269-394 (533)
70 cd01749 GATase1_PB Glutamine A 99.7 6.9E-16 1.5E-20 117.4 10.3 119 27-162 3-139 (183)
71 TIGR03800 PLP_synth_Pdx2 pyrid 99.6 5.9E-15 1.3E-19 112.5 12.6 127 27-161 2-155 (184)
72 PRK05368 homoserine O-succinyl 99.6 2.2E-14 4.7E-19 116.6 13.2 135 25-161 36-197 (302)
73 PLN02327 CTP synthase 99.6 8.5E-15 1.8E-19 126.4 8.8 115 5-121 278-415 (557)
74 cd01740 GATase1_FGAR_AT Type 1 99.5 1E-13 2.2E-18 109.6 12.0 131 27-159 1-151 (238)
75 PRK03619 phosphoribosylformylg 99.5 3.2E-13 6.9E-18 105.6 14.1 127 25-159 1-144 (219)
76 PRK01175 phosphoribosylformylg 99.5 2.1E-12 4.5E-17 103.4 13.8 92 22-113 1-105 (261)
77 COG0047 PurL Phosphoribosylfor 99.4 2.2E-12 4.7E-17 100.0 12.5 130 24-159 2-146 (231)
78 COG0504 PyrG CTP synthase (UTP 99.4 4.7E-13 1E-17 113.3 9.0 109 4-115 268-390 (533)
79 PRK06186 hypothetical protein; 99.4 5.1E-13 1.1E-17 104.7 6.9 92 25-118 2-103 (229)
80 cd03131 GATase1_HTS Type 1 glu 99.3 7.4E-12 1.6E-16 94.6 9.7 96 63-162 57-160 (175)
81 PRK13526 glutamine amidotransf 99.3 9.5E-12 2.1E-16 94.2 8.9 94 24-124 2-105 (179)
82 PLN02832 glutamine amidotransf 99.3 2.4E-11 5.1E-16 96.4 8.1 83 25-114 2-89 (248)
83 cd01750 GATase1_CobQ Type 1 gl 99.2 1.2E-10 2.5E-15 89.4 7.5 83 27-115 1-90 (194)
84 KOG2387 CTP synthase (UTP-ammo 99.1 2E-10 4.3E-15 96.4 7.4 110 6-115 280-410 (585)
85 KOG0623 Glutamine amidotransfe 99.1 1E-09 2.2E-14 89.9 10.7 124 26-160 3-149 (541)
86 cd03130 GATase1_CobB Type 1 gl 99.0 2.7E-09 5.8E-14 82.2 9.8 71 40-114 16-92 (198)
87 PF13507 GATase_5: CobB/CobQ-l 99.0 1.8E-09 3.8E-14 86.4 7.1 92 24-116 1-111 (259)
88 TIGR01857 FGAM-synthase phosph 98.8 8.2E-08 1.8E-12 90.2 14.3 134 23-159 976-1150(1239)
89 PRK11780 isoprenoid biosynthes 98.8 4.3E-08 9.4E-13 76.6 10.6 76 40-115 25-146 (217)
90 PLN03206 phosphoribosylformylg 98.8 1.7E-07 3.7E-12 88.7 14.0 91 23-113 1036-1142(1307)
91 TIGR01735 FGAM_synt phosphorib 98.7 1.5E-07 3.2E-12 89.4 12.8 135 22-159 1053-1214(1310)
92 PRK05297 phosphoribosylformylg 98.7 6.2E-07 1.3E-11 85.3 14.2 131 23-159 1034-1194(1290)
93 cd03133 GATase1_ES1 Type 1 glu 98.6 2.6E-07 5.6E-12 72.0 9.4 76 40-115 22-143 (213)
94 PRK06278 cobyrinic acid a,c-di 98.6 1.3E-07 2.8E-12 81.6 8.0 79 25-114 1-82 (476)
95 cd01653 GATase1 Type 1 glutami 98.6 3.4E-07 7.5E-12 61.0 8.1 73 38-110 15-92 (115)
96 PRK00784 cobyric acid synthase 98.6 1.3E-07 2.9E-12 81.8 6.7 83 25-114 252-342 (488)
97 cd03169 GATase1_PfpI_1 Type 1 98.6 4.2E-07 9.2E-12 68.5 8.4 46 68-113 76-124 (180)
98 TIGR01382 PfpI intracellular p 98.5 6E-07 1.3E-11 66.5 7.5 75 39-113 17-108 (166)
99 cd03128 GAT_1 Type 1 glutamine 98.4 7.7E-07 1.7E-11 56.8 6.3 73 38-110 15-92 (92)
100 PRK01077 cobyrinic acid a,c-di 98.4 8.8E-07 1.9E-11 76.1 8.0 86 25-114 246-339 (451)
101 cd03146 GAT1_Peptidase_E Type 98.4 1.1E-06 2.4E-11 68.3 7.5 88 22-113 29-130 (212)
102 cd03147 GATase1_Ydr533c_like T 98.4 2.3E-06 5E-11 67.4 8.5 74 40-113 30-143 (231)
103 cd03132 GATase1_catalase Type 98.4 1.9E-06 4.1E-11 62.4 7.4 89 25-113 2-111 (142)
104 cd03134 GATase1_PfpI_like A ty 98.3 3E-06 6.4E-11 62.7 8.2 75 39-113 17-110 (165)
105 PF04204 HTS: Homoserine O-suc 98.3 4.2E-06 9E-11 68.1 9.6 132 25-159 35-194 (298)
106 PRK11574 oxidative-stress-resi 98.3 7.1E-06 1.5E-10 62.5 10.2 90 23-113 1-115 (196)
107 TIGR00379 cobB cobyrinic acid 98.3 1.9E-06 4.2E-11 74.0 6.8 86 25-114 245-338 (449)
108 COG0693 ThiJ Putative intracel 98.3 4.4E-06 9.5E-11 63.3 7.9 90 25-114 3-116 (188)
109 PHA03366 FGAM-synthase; Provis 98.2 9.8E-06 2.1E-10 77.3 10.5 91 21-113 1025-1133(1304)
110 cd03140 GATase1_PfpI_3 Type 1 98.2 9.9E-06 2.1E-10 60.5 8.1 75 39-113 16-107 (170)
111 PRK13896 cobyrinic acid a,c-di 98.1 1.3E-05 2.9E-10 68.5 9.1 84 25-114 234-325 (433)
112 PF07685 GATase_3: CobB/CobQ-l 98.1 2E-06 4.4E-11 63.8 3.3 48 68-115 7-60 (158)
113 TIGR01001 metA homoserine O-su 98.1 2.2E-05 4.9E-10 63.6 9.1 129 24-157 35-192 (300)
114 cd03148 GATase1_EcHsp31_like T 98.1 1.8E-05 3.9E-10 62.5 8.5 47 67-113 95-145 (232)
115 cd03135 GATase1_DJ-1 Type 1 gl 98.1 2.8E-05 6.1E-10 57.0 8.9 75 39-113 16-109 (163)
116 TIGR01739 tegu_FGAM_synt herpe 98.1 2.3E-05 4.9E-10 74.4 10.2 88 23-113 928-1034(1202)
117 TIGR00313 cobQ cobyric acid sy 98.1 3.9E-06 8.6E-11 72.6 4.5 81 25-114 248-336 (475)
118 PRK04155 chaperone protein Hch 98.1 1.7E-05 3.6E-10 64.6 7.7 74 40-113 82-196 (287)
119 cd03141 GATase1_Hsp31_like Typ 98.0 2E-05 4.4E-10 61.5 7.6 47 67-113 89-139 (221)
120 COG0311 PDX2 Predicted glutami 98.0 2.7E-05 5.8E-10 59.0 7.8 82 25-113 1-88 (194)
121 PRK05282 (alpha)-aspartyl dipe 97.9 3.1E-05 6.7E-10 61.2 6.7 104 8-115 17-131 (233)
122 PF01174 SNO: SNO glutamine am 97.9 7.9E-06 1.7E-10 62.2 2.6 67 41-113 12-84 (188)
123 COG1492 CobQ Cobyric acid synt 97.9 3.1E-05 6.8E-10 66.6 6.1 84 23-114 250-342 (486)
124 TIGR01383 not_thiJ DJ-1 family 97.8 8E-05 1.7E-09 55.7 7.4 75 39-113 17-112 (179)
125 cd03137 GATase1_AraC_1 AraC tr 97.8 0.00017 3.7E-09 54.3 8.9 46 68-113 64-112 (187)
126 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.8 8.8E-06 1.9E-10 59.4 0.9 54 60-113 29-87 (147)
127 PRK11249 katE hydroperoxidase 97.7 0.0001 2.2E-09 66.7 7.6 91 23-113 596-707 (752)
128 cd03144 GATase1_ScBLP_like Typ 97.7 7.3E-05 1.6E-09 52.8 5.0 43 68-110 44-90 (114)
129 COG3442 Predicted glutamine am 97.5 7.5E-05 1.6E-09 58.1 3.3 73 40-114 26-104 (250)
130 cd03139 GATase1_PfpI_2 Type 1 97.5 0.00062 1.3E-08 50.9 7.7 75 39-113 16-110 (183)
131 KOG2764 Putative transcription 97.4 0.00072 1.6E-08 53.0 7.1 71 40-110 24-113 (247)
132 cd03129 GAT1_Peptidase_E_like 97.2 0.0022 4.8E-08 49.5 8.3 91 23-113 28-130 (210)
133 KOG1559 Gamma-glutamyl hydrola 97.2 0.001 2.2E-08 52.8 6.0 77 37-114 79-164 (340)
134 cd03138 GATase1_AraC_2 AraC tr 97.1 0.001 2.2E-08 50.4 5.2 46 68-113 69-120 (195)
135 COG1897 MetA Homoserine trans- 97.0 0.0058 1.3E-07 48.8 8.9 130 25-157 36-193 (307)
136 PRK09393 ftrA transcriptional 96.9 0.0091 2E-07 48.9 9.5 46 68-113 75-122 (322)
137 COG1797 CobB Cobyrinic acid a, 96.8 0.013 2.9E-07 50.1 9.9 129 25-161 246-397 (451)
138 PF13278 DUF4066: Putative ami 96.8 0.0017 3.7E-08 47.9 3.9 47 67-113 60-109 (166)
139 KOG3210 Imidazoleglycerol-phos 96.5 0.0095 2.1E-07 44.8 6.3 71 40-114 30-108 (226)
140 cd03136 GATase1_AraC_ArgR_like 96.5 0.0057 1.2E-07 45.9 5.1 46 68-113 64-111 (185)
141 KOG1907 Phosphoribosylformylgl 96.3 0.013 2.8E-07 54.0 7.1 135 24-159 1058-1219(1320)
142 PF06283 ThuA: Trehalose utili 96.0 0.11 2.5E-06 40.0 10.0 107 40-154 24-140 (217)
143 PRK04539 ppnK inorganic polyph 95.7 0.11 2.4E-06 42.5 9.3 75 26-107 7-102 (296)
144 PRK11104 hemG protoporphyrinog 95.6 0.14 2.9E-06 38.7 8.9 80 25-107 1-88 (177)
145 TIGR02069 cyanophycinase cyano 95.5 0.085 1.8E-06 42.1 7.9 105 7-113 13-132 (250)
146 PRK03708 ppnK inorganic polyph 95.5 0.076 1.7E-06 43.0 7.7 77 25-107 1-90 (277)
147 COG3340 PepE Peptidase E [Amin 95.5 0.07 1.5E-06 41.6 6.9 83 24-107 32-128 (224)
148 PRK02155 ppnK NAD(+)/NADH kina 95.4 0.11 2.3E-06 42.5 8.3 75 26-107 7-97 (291)
149 cd03145 GAT1_cyanophycinase Ty 95.3 0.17 3.6E-06 39.4 8.8 105 7-113 14-133 (217)
150 PRK01911 ppnK inorganic polyph 95.3 0.12 2.6E-06 42.2 8.2 76 25-107 1-98 (292)
151 PRK03372 ppnK inorganic polyph 95.2 0.16 3.6E-06 41.7 8.7 76 25-107 6-106 (306)
152 PRK03378 ppnK inorganic polyph 95.2 0.14 3.1E-06 41.8 8.3 75 26-107 7-97 (292)
153 PF09897 DUF2124: Uncharacteri 95.0 0.021 4.6E-07 41.8 2.8 83 20-105 15-119 (147)
154 cd00886 MogA_MoaB MogA_MoaB fa 95.0 0.42 9.1E-06 35.0 9.7 66 33-99 18-92 (152)
155 PRK14076 pnk inorganic polypho 94.4 0.26 5.7E-06 43.8 8.5 96 6-107 270-382 (569)
156 COG3155 ElbB Uncharacterized p 94.3 0.46 9.9E-06 35.7 8.4 52 67-118 84-149 (217)
157 PF09825 BPL_N: Biotin-protein 94.3 0.11 2.4E-06 43.8 5.7 85 25-112 1-97 (367)
158 COG4090 Uncharacterized protei 93.9 0.14 3E-06 36.9 4.7 37 68-105 85-124 (154)
159 PRK02649 ppnK inorganic polyph 93.7 0.46 9.9E-06 39.1 8.2 75 26-107 3-102 (305)
160 TIGR02667 moaB_proteo molybden 93.5 1.1 2.3E-05 33.4 9.2 60 33-93 20-87 (163)
161 COG4635 HemG Flavodoxin [Energ 93.3 0.33 7.2E-06 36.3 6.1 81 25-107 1-89 (175)
162 PF00072 Response_reg: Respons 93.3 0.19 4.1E-06 33.6 4.6 77 27-104 1-78 (112)
163 PRK01231 ppnK inorganic polyph 93.3 0.54 1.2E-05 38.4 7.9 75 26-107 6-96 (295)
164 PRK14077 pnk inorganic polypho 93.2 0.63 1.4E-05 37.9 8.2 76 25-107 11-98 (287)
165 PF03575 Peptidase_S51: Peptid 93.1 0.072 1.6E-06 39.0 2.4 73 37-109 2-81 (154)
166 PLN02929 NADH kinase 93.1 0.35 7.6E-06 39.7 6.5 62 36-106 35-96 (301)
167 PRK14075 pnk inorganic polypho 92.2 0.86 1.9E-05 36.5 7.6 70 25-107 1-72 (256)
168 PRK02645 ppnK inorganic polyph 92.2 0.97 2.1E-05 37.1 8.0 75 25-105 4-89 (305)
169 PRK01372 ddl D-alanine--D-alan 91.5 1.4 2.9E-05 35.5 8.1 55 21-75 1-63 (304)
170 PRK04885 ppnK inorganic polyph 91.5 0.81 1.8E-05 36.9 6.7 64 25-107 1-71 (265)
171 PRK02231 ppnK inorganic polyph 90.9 0.85 1.8E-05 36.9 6.3 62 38-106 3-75 (272)
172 smart00852 MoCF_biosynth Proba 90.5 1.5 3.2E-05 31.2 6.7 65 34-99 17-88 (135)
173 PRK05569 flavodoxin; Provision 90.4 4.9 0.00011 28.5 10.3 76 26-104 3-90 (141)
174 KOG1467 Translation initiation 89.8 2.3 4.9E-05 37.2 8.2 94 11-110 368-474 (556)
175 COG4977 Transcriptional regula 89.7 0.75 1.6E-05 38.2 5.2 46 68-113 76-124 (328)
176 COG0303 MoeA Molybdopterin bio 89.6 2.1 4.5E-05 36.7 7.9 58 34-92 202-265 (404)
177 PRK01215 competence damage-ind 89.5 3.2 7E-05 33.4 8.5 43 35-79 23-73 (264)
178 PF06490 FleQ: Flagellar regul 89.4 0.69 1.5E-05 32.1 4.1 74 26-103 1-75 (109)
179 PRK09468 ompR osmolarity respo 89.4 3 6.5E-05 31.7 8.1 81 23-105 4-85 (239)
180 PRK10816 DNA-binding transcrip 89.4 2.3 5.1E-05 31.8 7.4 79 25-105 1-80 (223)
181 PRK01185 ppnK inorganic polyph 89.3 2 4.4E-05 34.7 7.3 73 25-106 1-82 (271)
182 cd00885 cinA Competence-damage 89.1 7.8 0.00017 29.0 10.3 80 34-116 18-104 (170)
183 PRK11083 DNA-binding response 88.7 3.6 7.9E-05 30.6 8.0 80 24-104 3-82 (228)
184 COG4126 Hydantoin racemase [Am 88.5 4.8 0.0001 31.7 8.5 46 68-120 69-114 (230)
185 cd00758 MoCF_BD MoCF_BD: molyb 88.4 3.2 6.9E-05 29.5 7.1 60 34-94 18-83 (133)
186 PRK09417 mogA molybdenum cofac 88.2 2.7 5.9E-05 32.3 7.0 64 35-99 23-97 (193)
187 TIGR00177 molyb_syn molybdenum 87.9 3.2 7E-05 30.0 7.0 59 35-94 27-91 (144)
188 cd03142 GATase1_ThuA Type 1 gl 87.8 11 0.00025 29.4 10.4 115 34-153 22-143 (215)
189 PF00455 DeoRC: DeoR C termina 87.6 3.6 7.9E-05 30.4 7.2 96 7-104 2-101 (161)
190 PRK05568 flavodoxin; Provision 87.3 8.3 0.00018 27.2 10.8 77 26-105 3-90 (142)
191 PRK14690 molybdopterin biosynt 87.2 6.7 0.00014 33.7 9.5 56 35-91 220-281 (419)
192 PRK10336 DNA-binding transcrip 87.1 4.2 9.2E-05 30.0 7.5 79 25-104 1-79 (219)
193 PRK00561 ppnK inorganic polyph 87.1 1.9 4.2E-05 34.6 5.8 66 25-107 1-67 (259)
194 PRK15029 arginine decarboxylas 86.8 4 8.8E-05 37.7 8.4 78 25-104 1-92 (755)
195 PRK10161 transcriptional regul 86.4 5 0.00011 30.1 7.7 81 23-104 1-83 (229)
196 PRK10680 molybdopterin biosynt 86.4 7 0.00015 33.5 9.2 45 35-79 204-254 (411)
197 PLN02935 Bifunctional NADH kin 86.2 4.1 9E-05 35.8 7.8 76 25-106 195-295 (508)
198 PRK09836 DNA-binding transcrip 85.8 5 0.00011 30.1 7.4 78 25-104 1-79 (227)
199 PLN02727 NAD kinase 85.8 3.7 7.9E-05 38.7 7.5 77 24-107 678-777 (986)
200 PRK03673 hypothetical protein; 85.4 6.1 0.00013 33.7 8.3 46 34-79 20-71 (396)
201 PRK09271 flavodoxin; Provision 84.8 6.4 0.00014 28.8 7.3 53 25-78 1-60 (160)
202 COG2204 AtoC Response regulato 84.7 4.5 9.8E-05 35.3 7.2 80 22-103 2-82 (464)
203 PRK06756 flavodoxin; Provision 84.7 9.6 0.00021 27.3 8.1 78 25-105 2-91 (148)
204 PRK00421 murC UDP-N-acetylmura 84.6 11 0.00023 32.4 9.6 58 21-78 4-76 (461)
205 PRK00549 competence damage-ind 84.2 9.1 0.0002 32.8 8.9 44 34-79 19-70 (414)
206 PF03698 UPF0180: Uncharacteri 83.8 2.2 4.7E-05 28.2 3.9 45 26-80 3-47 (80)
207 PRK03767 NAD(P)H:quinone oxido 83.6 8.9 0.00019 29.1 7.9 32 25-56 2-39 (200)
208 PRK10766 DNA-binding transcrip 83.5 9.5 0.00021 28.3 8.0 78 24-104 2-80 (221)
209 TIGR01755 flav_wrbA NAD(P)H:qu 83.3 18 0.00039 27.5 9.8 32 25-56 1-38 (197)
210 PRK03094 hypothetical protein; 83.1 2 4.4E-05 28.3 3.5 38 37-80 10-47 (80)
211 TIGR01754 flav_RNR ribonucleot 83.0 12 0.00027 26.5 8.1 79 25-106 1-90 (140)
212 PRK13435 response regulator; P 82.8 7.8 0.00017 27.0 6.9 87 22-109 3-90 (145)
213 PF01513 NAD_kinase: ATP-NAD k 82.7 3.2 7E-05 33.5 5.3 36 66-107 74-110 (285)
214 TIGR00200 cinA_nterm competenc 82.6 12 0.00027 32.0 9.1 44 34-79 19-70 (413)
215 PRK03670 competence damage-ind 82.6 13 0.00027 29.8 8.6 45 35-79 20-71 (252)
216 PRK09390 fixJ response regulat 82.3 13 0.00027 26.7 8.0 81 23-104 2-82 (202)
217 PRK10643 DNA-binding transcrip 82.2 8.5 0.00018 28.4 7.2 78 25-104 1-79 (222)
218 cd03522 MoeA_like MoeA_like. T 82.2 15 0.00032 30.3 9.1 70 24-94 159-244 (312)
219 cd06284 PBP1_LacI_like_6 Ligan 81.5 8.2 0.00018 29.5 7.1 59 39-104 20-84 (267)
220 CHL00148 orf27 Ycf27; Reviewed 81.4 13 0.00029 27.8 8.1 80 24-105 6-85 (240)
221 COG0745 OmpR Response regulato 81.3 2.7 5.9E-05 33.0 4.3 79 25-106 1-81 (229)
222 TIGR02154 PhoB phosphate regul 81.1 8.1 0.00017 28.5 6.8 80 24-104 2-83 (226)
223 PRK09191 two-component respons 81.1 10 0.00022 29.2 7.6 83 22-105 135-218 (261)
224 PF09075 STb_secrete: Heat-sta 80.9 0.24 5.1E-06 28.2 -1.3 17 99-115 31-47 (48)
225 PRK03501 ppnK inorganic polyph 80.8 8.2 0.00018 31.1 7.0 64 26-106 4-74 (264)
226 PRK11173 two-component respons 80.7 12 0.00026 28.4 7.7 78 24-104 3-81 (237)
227 smart00448 REC cheY-homologous 80.3 4.6 0.0001 21.0 4.0 49 26-74 2-50 (55)
228 PRK06242 flavodoxin; Provision 80.3 10 0.00022 27.0 6.8 75 25-104 1-81 (150)
229 COG2185 Sbm Methylmalonyl-CoA 80.1 12 0.00027 27.4 7.0 72 22-94 10-90 (143)
230 cd06292 PBP1_LacI_like_10 Liga 80.0 15 0.00033 28.3 8.2 63 39-103 20-89 (273)
231 PRK15479 transcriptional regul 79.6 15 0.00033 26.9 7.9 79 25-104 1-79 (221)
232 PRK14497 putative molybdopteri 79.5 6.2 0.00013 35.1 6.3 57 35-92 206-268 (546)
233 PRK11361 acetoacetate metaboli 79.4 13 0.00028 31.6 8.2 81 22-104 2-83 (457)
234 PF00994 MoCF_biosynth: Probab 79.2 4.8 0.0001 28.8 4.8 77 34-116 16-102 (144)
235 COG1454 EutG Alcohol dehydroge 79.0 20 0.00044 30.4 9.0 62 25-87 30-104 (377)
236 TIGR03787 marine_sort_RR prote 78.8 14 0.00031 27.5 7.5 79 26-104 2-81 (227)
237 PRK13558 bacterio-opsin activa 78.4 11 0.00023 33.8 7.6 82 22-104 5-86 (665)
238 PRK06703 flavodoxin; Provision 77.4 24 0.00051 25.3 9.4 47 26-74 3-54 (151)
239 cd06305 PBP1_methylthioribose_ 77.4 12 0.00026 28.7 6.9 38 39-77 20-64 (273)
240 PRK10841 hybrid sensory kinase 77.2 12 0.00026 35.4 7.8 81 23-105 800-881 (924)
241 COG4285 Uncharacterized conser 77.2 3.9 8.4E-05 32.3 3.9 48 68-120 49-100 (253)
242 TIGR00147 lipid kinase, YegS/R 77.1 30 0.00065 27.6 9.3 71 39-115 23-102 (293)
243 PRK12359 flavodoxin FldB; Prov 77.1 12 0.00027 28.0 6.6 51 25-78 1-54 (172)
244 cd02067 B12-binding B12 bindin 77.0 14 0.00031 25.3 6.5 39 38-77 17-59 (119)
245 PRK14498 putative molybdopteri 77.0 23 0.00049 31.9 9.3 45 35-79 213-263 (633)
246 PF12724 Flavodoxin_5: Flavodo 76.8 6.8 0.00015 28.0 5.0 73 34-106 8-84 (143)
247 PRK06849 hypothetical protein; 76.8 19 0.00042 30.1 8.4 36 22-57 2-37 (389)
248 PF03358 FMN_red: NADPH-depend 76.7 11 0.00023 26.9 6.0 81 25-106 1-115 (152)
249 PRK09267 flavodoxin FldA; Vali 76.5 27 0.00059 25.5 9.6 78 26-106 3-89 (169)
250 cd00887 MoeA MoeA family. Memb 76.2 14 0.0003 31.4 7.3 57 35-92 195-257 (394)
251 cd06320 PBP1_allose_binding Pe 76.0 29 0.00064 26.7 8.8 59 40-103 21-88 (275)
252 PRK10923 glnG nitrogen regulat 76.0 19 0.00042 30.7 8.3 79 24-104 3-82 (469)
253 PRK13054 lipid kinase; Reviewe 75.7 18 0.00039 29.2 7.7 57 24-80 3-68 (300)
254 cd06318 PBP1_ABC_sugar_binding 75.7 10 0.00022 29.5 6.0 38 39-77 20-64 (282)
255 cd08185 Fe-ADH1 Iron-containin 75.4 27 0.00058 29.3 8.9 74 11-87 14-101 (380)
256 PRK09958 DNA-binding transcrip 75.4 15 0.00033 26.7 6.7 78 25-103 1-79 (204)
257 TIGR02990 ectoine_eutA ectoine 75.3 14 0.00031 29.2 6.8 94 9-112 106-218 (239)
258 PRK10365 transcriptional regul 75.3 21 0.00045 30.1 8.3 81 23-104 4-84 (441)
259 PRK04761 ppnK inorganic polyph 75.2 3.6 7.8E-05 32.8 3.3 34 68-107 25-59 (246)
260 PRK14569 D-alanyl-alanine synt 75.0 31 0.00068 27.8 8.9 52 23-74 2-62 (296)
261 PRK01390 murD UDP-N-acetylmura 74.8 24 0.00053 30.2 8.6 55 24-79 9-76 (460)
262 PLN03029 type-a response regul 74.4 19 0.00041 27.8 7.2 33 23-55 7-39 (222)
263 cd06309 PBP1_YtfQ_like Peripla 74.3 21 0.00046 27.5 7.6 41 37-77 18-64 (273)
264 PRK03604 moaC bifunctional mol 74.3 31 0.00067 28.5 8.7 60 34-94 174-240 (312)
265 PRK14189 bifunctional 5,10-met 74.1 16 0.00034 29.9 6.8 69 6-74 14-96 (285)
266 cd06310 PBP1_ABC_sugar_binding 73.5 38 0.00083 26.0 8.8 38 40-77 21-66 (273)
267 cd06300 PBP1_ABC_sugar_binding 72.8 13 0.00028 28.7 6.0 37 40-77 21-69 (272)
268 PRK10710 DNA-binding transcrip 72.6 31 0.00067 25.8 8.0 79 24-105 10-89 (240)
269 cd01574 PBP1_LacI Ligand-bindi 72.5 37 0.0008 25.9 8.5 39 39-77 20-65 (264)
270 PRK15408 autoinducer 2-binding 72.4 22 0.00047 29.3 7.5 76 22-102 21-110 (336)
271 COG1597 LCB5 Sphingosine kinas 72.3 33 0.00073 28.0 8.5 44 37-80 22-70 (301)
272 PRK13055 putative lipid kinase 72.2 41 0.00089 27.7 9.1 56 25-80 3-71 (334)
273 PRK11517 transcriptional regul 72.1 7.7 0.00017 28.8 4.4 78 25-104 1-78 (223)
274 PRK14166 bifunctional 5,10-met 71.9 15 0.00033 29.9 6.3 71 4-74 10-94 (282)
275 PRK14175 bifunctional 5,10-met 71.9 15 0.00032 30.1 6.2 71 4-74 12-96 (286)
276 cd06312 PBP1_ABC_sugar_binding 71.7 29 0.00063 26.8 7.8 60 40-104 22-89 (271)
277 cd08187 BDH Butanol dehydrogen 71.6 39 0.00085 28.3 9.0 74 11-87 17-104 (382)
278 PF00763 THF_DHG_CYH: Tetrahyd 71.5 17 0.00037 25.3 5.8 68 7-74 12-93 (117)
279 cd06319 PBP1_ABC_sugar_binding 71.3 20 0.00043 27.6 6.8 37 40-77 21-64 (277)
280 PRK15347 two component system 71.1 21 0.00046 33.0 7.8 81 24-106 690-775 (921)
281 PLN02958 diacylglycerol kinase 71.0 13 0.00029 32.5 6.1 62 19-80 106-180 (481)
282 TIGR01849 PHB_depoly_PhaZ poly 70.9 12 0.00027 32.0 5.8 76 25-111 103-183 (406)
283 COG1058 CinA Predicted nucleot 70.8 32 0.0007 27.6 7.8 47 34-80 20-72 (255)
284 cd06299 PBP1_LacI_like_13 Liga 70.7 36 0.00078 25.9 8.1 39 39-77 20-64 (265)
285 PRK13837 two-component VirA-li 70.5 21 0.00045 33.1 7.6 82 23-107 696-779 (828)
286 PRK14193 bifunctional 5,10-met 70.4 16 0.00035 29.8 6.2 71 4-74 12-96 (284)
287 PRK15115 response regulator Gl 70.3 33 0.00071 29.0 8.4 81 23-105 4-85 (444)
288 PF02056 Glyco_hydro_4: Family 70.3 8.4 0.00018 29.4 4.2 26 88-113 151-176 (183)
289 cd01545 PBP1_SalR Ligand-bindi 70.3 31 0.00067 26.3 7.6 39 39-77 20-65 (270)
290 PRK14169 bifunctional 5,10-met 70.2 20 0.00042 29.3 6.5 71 4-74 10-94 (282)
291 COG1609 PurR Transcriptional r 70.1 42 0.00092 27.5 8.7 39 37-76 77-122 (333)
292 cd06316 PBP1_ABC_sugar_binding 70.1 24 0.00053 27.7 7.1 38 40-77 21-65 (294)
293 PF12641 Flavodoxin_3: Flavodo 69.8 35 0.00076 25.3 7.4 71 31-105 5-77 (160)
294 PRK14182 bifunctional 5,10-met 69.7 17 0.00038 29.6 6.2 69 6-74 12-94 (282)
295 PRK10701 DNA-binding transcrip 69.5 33 0.00071 25.9 7.5 77 25-104 2-79 (240)
296 PRK14190 bifunctional 5,10-met 69.5 20 0.00042 29.3 6.4 70 5-74 13-96 (284)
297 cd06301 PBP1_rhizopine_binding 69.2 19 0.00042 27.6 6.3 38 39-77 20-65 (272)
298 cd08183 Fe-ADH2 Iron-containin 69.0 42 0.00091 28.1 8.6 62 25-87 23-93 (374)
299 PRK10840 transcriptional regul 68.9 33 0.00071 25.7 7.4 82 24-105 3-88 (216)
300 PRK14171 bifunctional 5,10-met 68.9 25 0.00053 28.8 6.9 70 5-74 12-96 (288)
301 PRK14176 bifunctional 5,10-met 68.5 28 0.0006 28.5 7.1 68 7-74 20-102 (287)
302 PRK14491 putative bifunctional 68.5 26 0.00057 31.5 7.6 45 35-79 394-444 (597)
303 COG0061 nadF NAD kinase [Coenz 68.2 37 0.00081 27.4 7.9 62 39-106 20-88 (281)
304 cd06273 PBP1_GntR_like_1 This 68.2 39 0.00084 25.8 7.8 39 39-77 20-64 (268)
305 PRK11091 aerobic respiration c 68.1 25 0.00053 32.1 7.5 82 23-106 524-609 (779)
306 PRK14167 bifunctional 5,10-met 67.7 35 0.00077 28.0 7.6 70 5-74 12-95 (297)
307 PRK14194 bifunctional 5,10-met 67.6 24 0.00052 29.1 6.6 72 3-74 12-97 (301)
308 TIGR00853 pts-lac PTS system, 67.3 21 0.00046 23.9 5.4 71 24-103 3-81 (95)
309 PRK13856 two-component respons 67.2 39 0.00084 25.6 7.6 77 26-105 3-80 (241)
310 PRK01368 murD UDP-N-acetylmura 67.0 57 0.0012 28.2 9.2 57 21-79 3-74 (454)
311 cd01080 NAD_bind_m-THF_DH_Cycl 67.0 39 0.00084 25.2 7.2 55 22-77 42-96 (168)
312 PRK14184 bifunctional 5,10-met 66.8 25 0.00053 28.8 6.5 71 4-74 10-95 (286)
313 PRK10355 xylF D-xylose transpo 66.7 37 0.00081 27.6 7.7 75 23-103 24-112 (330)
314 PRK14188 bifunctional 5,10-met 66.6 25 0.00055 28.8 6.6 70 5-74 12-96 (296)
315 COG0771 MurD UDP-N-acetylmuram 66.5 64 0.0014 28.1 9.3 32 24-56 7-38 (448)
316 COG4607 CeuA ABC-type enteroch 66.4 15 0.00034 30.3 5.2 52 21-79 55-128 (320)
317 TIGR02638 lactal_redase lactal 66.3 47 0.001 27.9 8.4 75 11-87 17-104 (379)
318 cd08191 HHD 6-hydroxyhexanoate 66.3 45 0.00098 28.1 8.3 72 13-87 13-97 (386)
319 cd01538 PBP1_ABC_xylose_bindin 66.3 57 0.0012 25.5 8.5 59 39-103 20-86 (288)
320 COG1349 GlpR Transcriptional r 66.2 32 0.00069 27.3 7.0 93 10-104 77-173 (253)
321 cd01540 PBP1_arabinose_binding 66.0 22 0.00048 27.6 6.1 38 39-77 20-63 (289)
322 cd08193 HVD 5-hydroxyvalerate 66.0 53 0.0012 27.4 8.6 75 11-87 14-101 (376)
323 TIGR01387 cztR_silR_copR heavy 65.6 33 0.00071 25.1 6.7 77 27-104 1-77 (218)
324 COG1184 GCD2 Translation initi 65.4 77 0.0017 26.1 9.6 84 19-107 140-231 (301)
325 COG3706 PleD Response regulato 65.3 29 0.00063 30.1 6.9 94 23-117 131-230 (435)
326 TIGR02956 TMAO_torS TMAO reduc 64.7 28 0.0006 32.5 7.3 79 25-105 703-785 (968)
327 TIGR02634 xylF D-xylose ABC tr 64.7 31 0.00067 27.5 6.8 40 37-76 17-62 (302)
328 PLN02516 methylenetetrahydrofo 64.4 31 0.00066 28.4 6.6 69 6-74 20-103 (299)
329 cd05014 SIS_Kpsf KpsF-like pro 64.4 40 0.00088 23.0 6.6 78 26-106 2-83 (128)
330 PRK04020 rps2P 30S ribosomal p 64.1 50 0.0011 25.6 7.5 73 24-104 67-144 (204)
331 cd06281 PBP1_LacI_like_5 Ligan 64.0 64 0.0014 24.7 8.3 39 39-77 20-64 (269)
332 COG0426 FpaA Uncharacterized f 63.8 41 0.00089 28.7 7.5 58 19-78 242-306 (388)
333 cd08179 NADPH_BDH NADPH-depend 63.7 52 0.0011 27.6 8.1 62 25-87 24-99 (375)
334 PRK09935 transcriptional regul 63.7 54 0.0012 23.7 7.6 80 24-104 3-84 (210)
335 PRK14180 bifunctional 5,10-met 63.4 28 0.00061 28.4 6.2 69 6-74 12-95 (282)
336 cd06314 PBP1_tmGBP Periplasmic 63.2 41 0.00089 25.9 7.1 38 40-77 20-64 (271)
337 PRK02261 methylaspartate mutas 62.8 54 0.0012 23.5 8.4 54 23-77 2-63 (137)
338 PRK09959 hybrid sensory histid 62.8 31 0.00067 33.2 7.3 80 23-104 957-1037(1197)
339 PRK14573 bifunctional D-alanyl 62.8 70 0.0015 29.8 9.4 54 25-78 5-73 (809)
340 cd08181 PPD-like 1,3-propanedi 62.7 83 0.0018 26.1 9.1 62 25-87 26-101 (357)
341 cd06296 PBP1_CatR_like Ligand- 62.6 63 0.0014 24.6 8.0 39 39-77 20-64 (270)
342 cd08170 GlyDH Glycerol dehydro 62.6 45 0.00097 27.5 7.5 74 25-104 23-108 (351)
343 COG0429 Predicted hydrolase of 62.6 50 0.0011 27.7 7.6 79 33-117 89-169 (345)
344 PRK10529 DNA-binding transcrip 62.4 14 0.00031 27.4 4.2 78 25-104 2-79 (225)
345 PRK10651 transcriptional regul 62.4 52 0.0011 23.8 7.2 85 20-105 2-88 (216)
346 PRK10681 DNA-binding transcrip 62.3 38 0.00082 26.8 6.8 91 10-103 78-173 (252)
347 PRK04308 murD UDP-N-acetylmura 62.1 89 0.0019 26.6 9.4 55 24-79 5-78 (445)
348 COG5426 Uncharacterized membra 62.0 10 0.00022 29.5 3.2 72 39-110 36-125 (254)
349 PF00289 CPSase_L_chain: Carba 61.9 6.7 0.00015 27.2 2.1 49 25-76 3-52 (110)
350 TIGR01753 flav_short flavodoxi 61.9 50 0.0011 22.8 10.0 42 34-78 9-54 (140)
351 TIGR01012 Sa_S2_E_A ribosomal 61.7 51 0.0011 25.4 7.1 75 24-105 61-139 (196)
352 PRK14179 bifunctional 5,10-met 61.7 36 0.00078 27.8 6.6 69 6-74 13-96 (284)
353 PTZ00254 40S ribosomal protein 61.6 47 0.001 26.6 7.1 75 23-104 70-148 (249)
354 PRK14186 bifunctional 5,10-met 61.6 33 0.00071 28.2 6.3 70 5-74 12-96 (297)
355 PLN02493 probable peroxisomal 61.6 98 0.0021 26.3 9.3 84 37-122 212-308 (367)
356 PRK00742 chemotaxis-specific m 61.3 52 0.0011 27.0 7.7 81 23-105 2-84 (354)
357 cd08551 Fe-ADH iron-containing 61.1 62 0.0013 26.9 8.2 75 11-87 11-98 (370)
358 PLN02616 tetrahydrofolate dehy 61.1 36 0.00078 28.8 6.6 69 6-74 84-167 (364)
359 cd06277 PBP1_LacI_like_1 Ligan 61.1 41 0.00088 25.8 6.7 39 39-77 23-67 (268)
360 PRK09701 D-allose transporter 61.1 83 0.0018 25.1 8.9 53 25-77 25-91 (311)
361 PRK11914 diacylglycerol kinase 60.7 47 0.001 26.8 7.2 56 25-80 9-76 (306)
362 cd06308 PBP1_sensor_kinase_lik 60.6 75 0.0016 24.4 8.4 39 39-77 20-65 (270)
363 COG4242 CphB Cyanophycinase an 60.2 62 0.0013 26.2 7.4 88 26-113 54-156 (293)
364 PF02310 B12-binding: B12 bind 60.1 22 0.00047 24.2 4.5 40 37-77 17-60 (121)
365 PRK11921 metallo-beta-lactamas 59.8 62 0.0014 27.3 8.0 55 23-78 246-309 (394)
366 cd06283 PBP1_RegR_EndR_KdgR_li 59.7 57 0.0012 24.7 7.3 39 39-77 20-64 (267)
367 PRK14192 bifunctional 5,10-met 59.6 35 0.00075 27.7 6.2 70 6-75 14-98 (283)
368 PRK15454 ethanol dehydrogenase 59.5 69 0.0015 27.2 8.2 75 11-87 37-124 (395)
369 COG0784 CheY FOG: CheY-like re 59.5 30 0.00064 23.2 5.1 87 22-110 3-91 (130)
370 cd06321 PBP1_ABC_sugar_binding 59.3 59 0.0013 24.9 7.3 37 40-77 21-66 (271)
371 PF13380 CoA_binding_2: CoA bi 59.2 54 0.0012 22.6 6.4 51 26-77 2-64 (116)
372 PRK14170 bifunctional 5,10-met 59.2 64 0.0014 26.4 7.6 69 6-74 13-95 (284)
373 cd06287 PBP1_LacI_like_8 Ligan 59.1 37 0.0008 26.5 6.2 39 38-77 27-65 (269)
374 PRK13337 putative lipid kinase 59.1 94 0.002 25.1 9.4 41 40-80 24-69 (304)
375 PLN02897 tetrahydrofolate dehy 59.1 34 0.00073 28.8 6.1 67 8-74 69-150 (345)
376 PRK10653 D-ribose transporter 59.0 60 0.0013 25.5 7.4 53 24-77 26-91 (295)
377 cd06322 PBP1_ABC_sugar_binding 59.0 72 0.0016 24.3 7.8 39 39-77 20-64 (267)
378 PRK14571 D-alanyl-alanine synt 58.7 66 0.0014 25.8 7.7 50 25-74 1-59 (299)
379 PF09822 ABC_transp_aux: ABC-t 58.7 58 0.0013 25.8 7.3 82 12-100 132-228 (271)
380 cd06315 PBP1_ABC_sugar_binding 58.7 63 0.0014 25.2 7.5 38 39-77 21-65 (280)
381 PRK14191 bifunctional 5,10-met 58.6 43 0.00094 27.3 6.5 69 6-74 12-95 (285)
382 PRK09581 pleD response regulat 58.5 52 0.0011 27.2 7.3 77 25-103 3-82 (457)
383 cd06280 PBP1_LacI_like_4 Ligan 58.4 72 0.0016 24.3 7.7 39 39-77 20-64 (263)
384 PRK10046 dpiA two-component re 58.4 71 0.0015 24.2 7.6 53 22-74 2-56 (225)
385 cd06302 PBP1_LsrB_Quorum_Sensi 58.4 52 0.0011 26.0 7.0 36 40-76 21-64 (298)
386 cd06306 PBP1_TorT-like TorT-li 58.2 37 0.00079 26.3 6.0 38 40-77 21-66 (268)
387 cd06290 PBP1_LacI_like_9 Ligan 58.1 77 0.0017 24.1 7.8 38 40-77 21-64 (265)
388 PRK09423 gldA glycerol dehydro 58.1 55 0.0012 27.3 7.3 86 13-105 20-116 (366)
389 cd01451 vWA_Magnesium_chelatas 58.0 47 0.001 24.4 6.3 53 70-122 101-165 (178)
390 PRK10411 DNA-binding transcrip 57.9 37 0.00081 26.7 6.0 87 14-104 83-174 (240)
391 PRK14174 bifunctional 5,10-met 57.8 42 0.00091 27.5 6.4 67 8-74 14-95 (295)
392 PLN02699 Bifunctional molybdop 57.7 68 0.0015 29.3 8.3 44 36-79 210-260 (659)
393 TIGR01319 glmL_fam conserved h 57.7 75 0.0016 27.9 8.1 69 11-79 57-131 (463)
394 cd06279 PBP1_LacI_like_3 Ligan 57.7 36 0.00077 26.5 5.9 39 39-77 25-65 (283)
395 cd06295 PBP1_CelR Ligand bindi 57.6 53 0.0011 25.3 6.8 38 40-77 32-73 (275)
396 PRK11107 hybrid sensory histid 57.2 55 0.0012 30.2 7.8 79 24-104 667-748 (919)
397 cd03332 LMO_FMN L-Lactate 2-mo 57.2 1.2E+02 0.0025 26.0 9.1 85 36-122 240-337 (383)
398 PRK09483 response regulator; P 57.2 59 0.0013 23.8 6.8 79 25-104 2-82 (217)
399 PRK11303 DNA-binding transcrip 57.1 97 0.0021 24.6 8.8 53 25-77 62-126 (328)
400 TIGR01082 murC UDP-N-acetylmur 57.1 93 0.002 26.6 8.7 51 27-79 2-69 (448)
401 KOG3857 Alcohol dehydrogenase, 56.9 54 0.0012 27.9 6.8 72 12-84 59-142 (465)
402 cd05212 NAD_bind_m-THF_DH_Cycl 56.9 72 0.0016 23.0 8.0 69 8-77 12-80 (140)
403 cd08182 HEPD Hydroxyethylphosp 56.8 84 0.0018 26.1 8.2 75 11-87 11-95 (367)
404 PRK10434 srlR DNA-bindng trans 56.4 46 0.001 26.4 6.3 93 9-103 76-173 (256)
405 KOG2862 Alanine-glyoxylate ami 56.3 1.2E+02 0.0026 25.5 9.4 91 8-101 78-175 (385)
406 PF13649 Methyltransf_25: Meth 56.3 34 0.00075 22.4 4.9 70 23-93 23-92 (101)
407 PRK10955 DNA-binding transcrip 56.2 74 0.0016 23.5 7.2 76 25-104 2-78 (232)
408 cd01539 PBP1_GGBP Periplasmic 56.2 46 0.001 26.4 6.4 60 39-103 20-88 (303)
409 cd00291 SirA_YedF_YeeD SirA, Y 56.2 44 0.00095 20.3 7.0 49 7-55 9-57 (69)
410 COG0521 MoaB Molybdopterin bio 55.7 87 0.0019 23.6 8.2 60 38-99 30-98 (169)
411 cd06297 PBP1_LacI_like_12 Liga 55.6 80 0.0017 24.3 7.6 39 39-77 20-64 (269)
412 cd08173 Gro1PDH Sn-glycerol-1- 55.6 67 0.0015 26.4 7.4 85 11-102 12-107 (339)
413 PRK03369 murD UDP-N-acetylmura 55.2 91 0.002 27.1 8.4 32 23-55 11-42 (488)
414 cd06324 PBP1_ABC_sugar_binding 55.1 91 0.002 24.7 7.9 39 39-77 21-67 (305)
415 PF00670 AdoHcyase_NAD: S-aden 54.9 46 0.001 24.9 5.7 48 9-57 8-55 (162)
416 PF02882 THF_DHG_CYH_C: Tetrah 54.8 85 0.0019 23.3 8.4 63 14-77 26-88 (160)
417 PRK10423 transcriptional repre 54.8 94 0.002 24.6 8.0 39 39-77 77-121 (327)
418 PRK00141 murD UDP-N-acetylmura 54.7 78 0.0017 27.4 7.9 30 25-55 16-45 (473)
419 PF00465 Fe-ADH: Iron-containi 54.7 30 0.00065 28.7 5.2 70 10-84 10-93 (366)
420 PRK09860 putative alcohol dehy 54.7 1.3E+02 0.0028 25.3 9.2 75 11-87 19-106 (383)
421 cd06274 PBP1_FruR Ligand bindi 54.7 72 0.0016 24.3 7.1 39 39-77 20-64 (264)
422 cd06313 PBP1_ABC_sugar_binding 54.6 89 0.0019 24.2 7.7 37 39-76 20-63 (272)
423 TIGR01752 flav_long flavodoxin 54.5 83 0.0018 23.0 9.1 78 27-106 2-87 (167)
424 cd01536 PBP1_ABC_sugar_binding 54.4 67 0.0014 24.2 6.8 38 40-77 21-64 (267)
425 PRK13557 histidine kinase; Pro 54.3 66 0.0014 27.3 7.4 81 24-104 415-496 (540)
426 cd06289 PBP1_MalI_like Ligand- 54.3 83 0.0018 23.8 7.4 37 40-77 21-64 (268)
427 TIGR01818 ntrC nitrogen regula 54.2 56 0.0012 27.8 6.9 77 27-104 1-77 (463)
428 PRK14185 bifunctional 5,10-met 53.9 80 0.0017 25.9 7.4 68 7-74 13-95 (293)
429 PF13407 Peripla_BP_4: Peripla 53.9 37 0.00079 25.9 5.3 61 40-106 20-89 (257)
430 cd01575 PBP1_GntR Ligand-bindi 53.8 95 0.0021 23.5 8.6 39 39-77 20-64 (268)
431 PRK10703 DNA-binding transcrip 53.6 1.1E+02 0.0025 24.4 8.9 53 25-77 60-124 (341)
432 PLN02699 Bifunctional molybdop 53.4 88 0.0019 28.7 8.2 65 15-79 449-535 (659)
433 COG2247 LytB Putative cell wal 53.3 99 0.0022 25.9 7.8 43 39-81 42-88 (337)
434 COG1031 Uncharacterized Fe-S o 53.2 59 0.0013 28.7 6.7 76 25-102 1-103 (560)
435 PLN02884 6-phosphofructokinase 53.2 16 0.00034 31.5 3.3 48 66-113 141-201 (411)
436 PRK05452 anaerobic nitric oxid 53.1 1.1E+02 0.0024 26.7 8.6 54 25-79 252-314 (479)
437 cd06298 PBP1_CcpA_like Ligand- 53.1 98 0.0021 23.4 8.4 38 40-77 21-64 (268)
438 PRK14168 bifunctional 5,10-met 53.0 81 0.0018 25.9 7.3 71 4-74 12-97 (297)
439 COG3199 Predicted inorganic po 53.0 24 0.00052 29.7 4.2 36 68-109 100-135 (355)
440 TIGR00640 acid_CoA_mut_C methy 53.0 81 0.0018 22.5 6.8 41 37-78 19-63 (132)
441 PRK10624 L-1,2-propanediol oxi 52.9 1.3E+02 0.0029 25.2 8.9 74 11-86 18-104 (382)
442 cd08194 Fe-ADH6 Iron-containin 52.5 1.4E+02 0.0029 25.0 8.8 62 25-87 24-98 (375)
443 cd06317 PBP1_ABC_sugar_binding 52.3 1E+02 0.0022 23.4 7.7 58 40-103 22-87 (275)
444 COG0796 MurI Glutamate racemas 52.0 1.3E+02 0.0028 24.5 9.2 81 21-107 2-101 (269)
445 cd05298 GH4_GlvA_pagL_like Gly 51.9 36 0.00077 29.5 5.3 18 96-113 158-175 (437)
446 PRK10906 DNA-binding transcrip 51.7 65 0.0014 25.5 6.5 88 14-104 81-173 (252)
447 cd00363 PFK Phosphofructokinas 51.6 11 0.00023 31.5 2.0 49 65-113 89-150 (338)
448 TIGR00333 nrdI ribonucleoside- 51.5 85 0.0018 22.3 6.4 66 34-104 4-69 (125)
449 cd08178 AAD_C C-terminal alcoh 51.4 84 0.0018 26.5 7.5 62 25-87 22-96 (398)
450 cd02070 corrinoid_protein_B12- 51.1 1.1E+02 0.0023 23.3 8.0 94 24-119 82-188 (201)
451 cd06282 PBP1_GntR_like_2 Ligan 50.9 1.1E+02 0.0023 23.2 8.0 60 39-104 20-86 (266)
452 PF00532 Peripla_BP_1: Peripla 50.8 49 0.0011 26.3 5.7 39 39-77 22-65 (279)
453 PRK11466 hybrid sensory histid 50.8 71 0.0015 29.6 7.4 80 23-104 680-761 (914)
454 PRK04690 murD UDP-N-acetylmura 50.7 1.5E+02 0.0033 25.6 9.1 32 24-56 8-39 (468)
455 cd06285 PBP1_LacI_like_7 Ligan 50.5 1.1E+02 0.0024 23.3 7.7 38 39-76 20-63 (265)
456 cd01425 RPS2 Ribosomal protein 50.5 1.1E+02 0.0024 23.2 9.1 74 24-104 56-157 (193)
457 PLN02979 glycolate oxidase 50.5 60 0.0013 27.5 6.3 84 37-122 211-307 (366)
458 PF02602 HEM4: Uroporphyrinoge 50.4 50 0.0011 25.1 5.5 67 10-77 103-177 (231)
459 cd05565 PTS_IIB_lactose PTS_II 50.3 67 0.0014 21.9 5.5 58 39-103 19-78 (99)
460 cd01542 PBP1_TreR_like Ligand- 50.2 1.1E+02 0.0024 23.1 7.7 38 40-77 21-64 (259)
461 PRK13509 transcriptional repre 50.2 65 0.0014 25.5 6.2 88 11-103 80-172 (251)
462 COG2242 CobL Precorrin-6B meth 50.1 89 0.0019 23.9 6.6 86 22-113 56-144 (187)
463 TIGR01081 mpl UDP-N-acetylmura 49.8 1.4E+02 0.003 25.5 8.6 12 68-79 60-71 (448)
464 cd06293 PBP1_LacI_like_11 Liga 49.7 1.1E+02 0.0025 23.2 8.0 39 39-77 20-64 (269)
465 TIGR00524 eIF-2B_rel eIF-2B al 49.6 1.1E+02 0.0025 25.0 7.7 87 14-105 142-239 (303)
466 cd06270 PBP1_GalS_like Ligand 49.5 1.2E+02 0.0025 23.2 8.4 39 39-77 20-64 (268)
467 PF02601 Exonuc_VII_L: Exonucl 49.2 77 0.0017 25.8 6.7 81 21-101 11-111 (319)
468 COG1736 DPH2 Diphthamide synth 49.2 1E+02 0.0022 26.0 7.4 61 23-83 236-303 (347)
469 cd08186 Fe-ADH8 Iron-containin 49.1 1.6E+02 0.0034 24.7 8.7 62 25-87 27-102 (383)
470 PRK10936 TMAO reductase system 48.9 95 0.0021 25.3 7.3 74 24-103 46-134 (343)
471 PRK07239 bifunctional uroporph 48.8 1E+02 0.0022 25.8 7.5 94 20-119 7-120 (381)
472 cd01541 PBP1_AraR Ligand-bindi 48.8 1.1E+02 0.0023 23.5 7.2 38 40-77 21-64 (273)
473 cd02071 MM_CoA_mut_B12_BD meth 48.8 88 0.0019 21.6 8.0 40 38-78 17-60 (122)
474 PF10087 DUF2325: Uncharacteri 48.6 78 0.0017 21.0 8.8 84 26-113 1-92 (97)
475 PRK01710 murD UDP-N-acetylmura 48.6 1.7E+02 0.0038 25.0 9.1 31 25-56 15-45 (458)
476 cd08176 LPO Lactadehyde:propan 48.5 1.2E+02 0.0025 25.4 7.8 74 11-86 16-102 (377)
477 PRK09802 DNA-binding transcrip 48.2 74 0.0016 25.5 6.3 91 11-104 93-188 (269)
478 PRK14072 6-phosphofructokinase 48.2 14 0.0003 31.8 2.2 47 66-112 101-160 (416)
479 cd08171 GlyDH-like2 Glycerol d 48.0 1.6E+02 0.0034 24.3 8.5 76 25-105 23-110 (345)
480 PRK10310 PTS system galactitol 48.0 81 0.0017 21.0 6.9 34 40-76 23-58 (94)
481 cd05564 PTS_IIB_chitobiose_lic 47.9 58 0.0013 21.7 4.9 56 39-103 18-77 (96)
482 PRK10610 chemotaxis regulatory 47.9 70 0.0015 20.2 7.0 81 24-105 5-88 (129)
483 TIGR01481 ccpA catabolite cont 47.8 1.4E+02 0.003 23.7 8.3 53 25-77 60-124 (329)
484 cd06267 PBP1_LacI_sugar_bindin 47.7 1.1E+02 0.0023 22.9 7.0 38 40-77 21-64 (264)
485 cd01543 PBP1_XylR Ligand-bindi 47.7 1.1E+02 0.0023 23.5 7.1 38 39-76 19-58 (265)
486 PRK07308 flavodoxin; Validated 47.6 98 0.0021 21.9 9.4 50 26-78 3-57 (146)
487 COG4566 TtrR Response regulato 47.4 1.3E+02 0.0029 23.3 7.4 33 23-55 3-35 (202)
488 cd06323 PBP1_ribose_binding Pe 47.3 1.2E+02 0.0026 22.9 7.3 59 39-103 20-86 (268)
489 cd00532 MGS-like MGS-like doma 47.2 89 0.0019 21.3 6.0 62 40-101 34-103 (112)
490 cd08195 DHQS Dehydroquinate sy 47.2 1.5E+02 0.0033 24.4 8.2 78 25-105 25-119 (345)
491 PRK02006 murD UDP-N-acetylmura 47.2 1.8E+02 0.0039 25.2 9.0 32 24-56 7-38 (498)
492 cd08184 Fe-ADH3 Iron-containin 46.9 1.7E+02 0.0037 24.4 8.7 73 13-87 13-99 (347)
493 PRK00843 egsA NAD(P)-dependent 46.9 1.7E+02 0.0036 24.3 8.6 81 18-104 28-118 (350)
494 PRK12555 chemotaxis-specific m 46.8 1.1E+02 0.0023 25.0 7.2 79 25-106 1-82 (337)
495 COG2201 CheB Chemotaxis respon 46.7 1E+02 0.0022 26.1 7.0 51 24-74 1-53 (350)
496 PRK06555 pyrophosphate--fructo 46.6 18 0.0004 31.0 2.7 50 64-113 108-170 (403)
497 PRK08227 autoinducer 2 aldolas 46.2 38 0.00082 27.4 4.3 94 8-106 126-226 (264)
498 cd08549 G1PDH_related Glycerol 46.1 1.7E+02 0.0036 24.1 8.6 75 25-104 25-111 (332)
499 TIGR02417 fruct_sucro_rep D-fr 46.1 1.5E+02 0.0032 23.5 9.0 53 25-77 61-125 (327)
500 PRK07085 diphosphate--fructose 45.8 18 0.00039 32.3 2.6 48 66-113 162-224 (555)
No 1
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.9e-35 Score=220.82 Aligned_cols=134 Identities=46% Similarity=0.855 Sum_probs=121.7
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
+||++|||+|||+++++++++++|+++.+++++..+.+.++..++|+||||+||++|.|.+...+.|+++.+++|+||||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVC 81 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVC 81 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEEC
Confidence 57999999999999999999999999999998855666676678999999999999999998899999997889999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||.|+++|||+|.+.+ .+.||..+.+... ++.+|+|+|+.|.|..|||..++
T Consensus 82 LGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~---g~~iF~glp~~f~v~RYHSLvv~ 135 (191)
T COG0512 82 LGHQAIAEAFGGKVVRAK-EPMHGKTSIITHD---GSGLFAGLPNPFTVTRYHSLVVD 135 (191)
T ss_pred ccHHHHHHHhCCEEEecC-CCcCCeeeeeecC---CcccccCCCCCCEEEeeEEEEec
Confidence 999999999999999998 6889998766554 57899999999999999998764
No 2
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=3.5e-34 Score=218.70 Aligned_cols=133 Identities=42% Similarity=0.796 Sum_probs=117.6
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||++|||+|||++++.++|+++|+++.++++++.+.+++...+||+|||||||++|.+.....++++.+.+++|+||||+
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl 80 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence 49999999999999999999999999999988667777766689999999999999887766777777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+||.++||+|.+.. ..++|..+++..+ .+++|+++|..+.|++||+++|+
T Consensus 81 G~Q~la~a~Gg~v~~~~-~~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~ 133 (187)
T PRK08007 81 GHQAMAQAFGGKVVRAA-KVMHGKTSPITHN---GEGVFRGLANPLTVTRYHSLVVE 133 (187)
T ss_pred HHHHHHHHcCCEEEeCC-CcccCCceEEEEC---CCCcccCCCCCcEEEEcchhEEc
Confidence 99999999999999988 4578877777765 45799999999999999999883
No 3
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.2e-33 Score=216.18 Aligned_cols=132 Identities=42% Similarity=0.812 Sum_probs=116.1
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||++|||+|||+++++++|++.|+++.+++++..+.+++.+.++|+|||+|||+++.+.+....+++.+++++|+||||+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~ 80 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence 49999999999999999999999999999987666778876789999999999999887666677777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|||+||.++||+|.+.. .+++|+...+... .+++|+++|+.+.+++||++.|
T Consensus 81 G~Qlla~~~GG~v~~~~-~~~~G~~~~~~~~---~~~lf~~l~~~~~v~~~Hs~~v 132 (191)
T PRK06774 81 GHQALGQAFGARVVRAR-QVMHGKTSAICHS---GQGVFRGLNQPLTVTRYHSLVI 132 (191)
T ss_pred HHHHHHHHhCCEEEeCC-cceecceEEEEec---CchhhcCCCCCcEEEEeCccee
Confidence 99999999999999987 4688997544332 5789999999999999999987
No 4
>PLN02335 anthranilate synthase
Probab=100.00 E-value=2e-33 Score=219.76 Aligned_cols=144 Identities=80% Similarity=1.301 Sum_probs=124.4
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCC
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 98 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~ 98 (163)
.+++.+.+|+|||++++|++++.++|+++|+++++++++..+.+++...++|+|||+|||++|+|.+...++++++..++
T Consensus 13 ~~~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~ 92 (222)
T PLN02335 13 NSSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLV 92 (222)
T ss_pred cccCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCC
Confidence 56677789999999999999999999999999999998755666665567999999999999998776667777777789
Q ss_pred CEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|+||||+|||+|+.++||+|.+.+.++++|...++..+....++||+++|+.+.+++||+|+|+
T Consensus 93 PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~ 156 (222)
T PLN02335 93 PLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIE 156 (222)
T ss_pred CEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEe
Confidence 9999999999999999999999875567877777776653357899999999999999999984
No 5
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=1.5e-33 Score=216.51 Aligned_cols=132 Identities=40% Similarity=0.790 Sum_probs=116.3
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||+||||+|||++++.++|+++|.++.++++++.+.+++...++|+|||+|||++|++.+...+.++.+.+++|+||||+
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl 80 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence 59999999999999999999999999999987666677766689999999999999987666677777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|||+|+.++||+|.+.+ ..++|+..++..+ ++++|+++|+.|.+++||++.|
T Consensus 81 G~Qlla~~lGg~V~~~~-~~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~H~~~v 132 (195)
T PRK07649 81 GHQSIAQVFGGEVVRAE-RLMHGKTSLMHHD---GKTIFSDIPNPFTATRYHSLIV 132 (195)
T ss_pred HHHHHHHHcCCEEeeCC-CcccCCeEEEEEC---CChhhcCCCCCCEEEEechheE
Confidence 99999999999999987 4678887666543 4689999999999999999987
No 6
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=2.2e-32 Score=208.89 Aligned_cols=132 Identities=43% Similarity=0.780 Sum_probs=115.1
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||++|||+|||+.++.++|+++|+++.+++++..+.+++...++|+|||||||+++.+.....++++++.+++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~ 80 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL 80 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence 49999999999999999999999999999977556777766689999999999999876555677777777899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|||+|+.++||+|.+.+ ..++|..+++.++ .+++|.++++.|.+++||++.|
T Consensus 81 G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~---~~~~~~~l~~~~~v~~~H~~~v 132 (188)
T TIGR00566 81 GHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN---GAGIFRGLFNPLTATRYHSLVV 132 (188)
T ss_pred HHHHHHHHcCCEEeeCC-CccccceEEEEEC---CCccccCCCCCcEEEEcccceE
Confidence 99999999999999987 4567866677765 4568999988899999999988
No 7
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=1.9e-32 Score=209.64 Aligned_cols=133 Identities=47% Similarity=0.851 Sum_probs=113.2
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||+||||+|+|++++.++|++.|+++.+++++..+.+++...++|||||+|||+++.+......+++.+++++|+||||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl 80 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL 80 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence 49999999999999999999999999999977556666655589999999999999876555555555678899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+||.++||+|.+.+ ..++|+...+... .+++|+++|+.+.+++||+|.|+
T Consensus 81 G~Qlla~~~Gg~V~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~ 133 (190)
T CHL00101 81 GHQSIGYLFGGKIIKAP-KPMHGKTSKIYHN---HDDLFQGLPNPFTATRYHSLIID 133 (190)
T ss_pred hHHHHHHHhCCEEEECC-CcccCceeeEeeC---CcHhhccCCCceEEEcchhheee
Confidence 99999999999999988 4568887555532 57899999999999999999983
No 8
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=2.6e-32 Score=208.74 Aligned_cols=133 Identities=29% Similarity=0.528 Sum_probs=113.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
|||+||||+|+|+.++.++|++.|+++.+++++..+.+++. ++|+|||+|||+++.+.+.+.++++++++++|+||||
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIC 79 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVC 79 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEc
Confidence 68999999999999999999999999999987644444554 7999999999997765556677787777889999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||+||.++||+|.+.+ ..++|+...+.... +++||+++|+++.+++||+++|+
T Consensus 80 lG~Qlla~~~Gg~V~~~~-~~~~g~~~~v~~~~--~~~l~~~~~~~~~v~~~Hs~~v~ 134 (190)
T PRK06895 80 LGHQTLCEFFGGELYNLN-NVRHGQQRPLKVRS--NSPLFDGLPEEFNIGLYHSWAVS 134 (190)
T ss_pred HHHHHHHHHhCCeEeecC-CCccCceEEEEECC--CChhhhcCCCceEEEcchhheec
Confidence 999999999999999876 35677765666543 68999999999999999999984
No 9
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=5.4e-32 Score=207.48 Aligned_cols=133 Identities=41% Similarity=0.789 Sum_probs=114.8
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||++|||+|||++++.++|+++|+++++++++..+.+++...++|++|++|||+++++.....++++.+++++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl 80 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL 80 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence 49999999999999999999999999999987545555555579999999999999876666677777778899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+||.++||+|.+.+ ..++|+..++..+ ++++|+++|+.+.|++||+++|.
T Consensus 81 G~Qlia~a~Gg~v~~~~-~~~~G~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~ 133 (193)
T PRK08857 81 GHQAIAQVFGGQVVRAR-QVMHGKTSPIRHT---GRSVFKGLNNPLTVTRYHSLVVK 133 (193)
T ss_pred HHHHHHHHhCCEEEeCC-CceeCceEEEEEC---CCcccccCCCccEEEEccEEEEE
Confidence 99999999999999987 4578986666654 46799999999999999999873
No 10
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=4.3e-32 Score=207.30 Aligned_cols=133 Identities=51% Similarity=0.939 Sum_probs=114.9
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
||+|||++|+|++++.++|+++|+++++++++....+++...++|||||+|||+++.+.....++++++.+++|+||||+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 59999999999999999999999999999987445555555579999999999999877666777777777899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+|+.++||+|.+.+ ..++|+..++... .+++|+++|+++.+++||+|.|+
T Consensus 81 G~Qlla~alGg~v~~~~-~~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~ 133 (189)
T PRK05670 81 GHQAIGEAFGGKVVRAK-EIMHGKTSPIEHD---GSGIFAGLPNPFTVTRYHSLVVD 133 (189)
T ss_pred HHHHHHHHhCCEEEecC-CcccCceeEEEeC---CCchhccCCCCcEEEcchhheec
Confidence 99999999999999987 4578887666632 57899999999999999999983
No 11
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.97 E-value=2.3e-30 Score=200.68 Aligned_cols=135 Identities=33% Similarity=0.613 Sum_probs=112.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
.+|++||++|+|++++.++|+++|+++++++++ .+.+++...+||+|||||||+++.|.....++++.+.+++|+||||
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC 80 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC 80 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence 469999999999999999999999999999986 4567776568999999999999988765566666554679999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCC------------CceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLS------------KYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp------------~~~~v~~~H~~~v~ 162 (163)
+|||+|+.++||+|.+.. +++|....+.+++ +..+++|+++| +++.|++||+|.|.
T Consensus 81 lG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~ 149 (208)
T PRK05637 81 LGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCV 149 (208)
T ss_pred HHHHHHHHHcCCeeccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhh
Confidence 999999999999999765 4678766666553 33578999886 46899999999874
No 12
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.97 E-value=7.8e-30 Score=196.09 Aligned_cols=134 Identities=28% Similarity=0.432 Sum_probs=114.6
Q ss_pred CeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHHh-CCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV 98 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~~-~~~~ 98 (163)
.+|+|+|+++++++.+.+++++.| ...++.+++ .+.++++..++||+||+|||.++++++ ...++|+++ ..++
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~ 80 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK 80 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence 479999999999999999999999 777777775 556666666889999999999998765 357777775 5677
Q ss_pred CEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCce-EEeeeeeceec
Q 031223 99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYV-SISCYNIQCFA 162 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~-~v~~~H~~~v~ 162 (163)
|+||||+|||+||.++||+|.+... .|+|+. ++++++ ..++||+++|..+ .|++||+|+|+
T Consensus 81 pvLGIC~G~Ql~A~~lGg~V~~~~~-~E~G~~-~v~~~~-~~~~l~~gl~~~~~~v~~sH~D~v~ 142 (198)
T COG0518 81 PVLGICLGHQLLAKALGGKVERGPK-REIGWT-PVELTE-GDDPLFAGLPDLFTTVFMSHGDTVV 142 (198)
T ss_pred CEEEEChhHHHHHHHhCCEEeccCC-CccceE-EEEEec-CccccccCCccccCccccchhCccc
Confidence 8999999999999999999999984 799997 788874 3568999999888 59999999986
No 13
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.96 E-value=4.2e-29 Score=189.82 Aligned_cols=132 Identities=52% Similarity=0.905 Sum_probs=109.3
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehH
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G 106 (163)
|+|||++++|++++.++|++.|+++++++++.......+..++||||++|||+++.+......+++.+.+++|+||||+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence 68999999999999999999999999999874322211234899999999999987765444444446678999999999
Q ss_pred HHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 107 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 107 ~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
||+||.++||+|.+.+ ..++|+.++++.+ ++++|+++|+.+.+++||+|+|+
T Consensus 81 ~Qlla~~~Gg~v~~~~-~~~~g~~~~v~~~---~~~~~~~~~~~~~~~~~H~~~v~ 132 (184)
T cd01743 81 HQAIAEAFGGKVVRAP-EPMHGKTSEIHHD---GSGLFKGLPQPFTVGRYHSLVVD 132 (184)
T ss_pred HHHHHHHhCCEEEeCC-CCCcCceeEEEEC---CCccccCCCCCcEEEeCcEEEEe
Confidence 9999999999999987 3467777777765 47899999999999999999985
No 14
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=7.9e-29 Score=192.88 Aligned_cols=133 Identities=43% Similarity=0.760 Sum_probs=111.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvL 101 (163)
|||+++|+++++++++.++|++.|+.+++++++....++.. ..++|||||+|||+++.+.....++++++ ++++|+|
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 58999999999999999999999999999998742222332 23799999999999887765566788884 6789999
Q ss_pred EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|||+|||+|+.++||+|.+.+ ..++|..+.+.++ .+.+|.++++.+.+++||+|.|
T Consensus 81 GIC~G~Qlla~a~GG~v~~~~-~~~~g~~~~v~~~---~~~~~~~~~~~~~v~~~H~~~v 136 (214)
T PRK07765 81 GVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVHHT---GVGVLAGLPDPFTATRYHSLTI 136 (214)
T ss_pred EEccCHHHHHHHhCCEEeeCC-CCccCceeEEEEC---CCccccCCCCccEEEecchheE
Confidence 999999999999999999987 3567887677765 3558999999999999999988
No 15
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.96 E-value=2e-28 Score=212.01 Aligned_cols=134 Identities=32% Similarity=0.604 Sum_probs=112.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC---CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~---~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
+||+||||+|||++++.++|+++|.++.+++++.. ..+++...++|+|||||||++|.|.+...++++++..++|||
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL 81 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 81 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence 47999999999999999999999999999986521 245565557899999999999988765555555566789999
Q ss_pred EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+|||+|+.++||+|.+.. ..++|+...+... ++++|.++|.++.|++||++.|.
T Consensus 82 GIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~Hs~~v~ 138 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHD---GQAMFAGLTNPLPVARYHSLVGS 138 (531)
T ss_pred EEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEeec---CCccccCCCCCcEEEEehheecc
Confidence 999999999999999999987 4678887555543 46799999999999999999873
No 16
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=8.1e-28 Score=177.15 Aligned_cols=137 Identities=82% Similarity=1.365 Sum_probs=126.2
Q ss_pred CeEEEEECCCChHHHHHHHH-HHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l-~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
..|.+|||+|||+.++.++| -+.|+.+.++++|+.+.+++...++++++||+||+.|.|.+-..+.++++...+|+|||
T Consensus 19 ~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGv 98 (223)
T KOG0026|consen 19 GPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGV 98 (223)
T ss_pred CCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeee
Confidence 45999999999999999999 67899999999999999999888999999999999999888888999999889999999
Q ss_pred ehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|.|.|.|..+|||+|.+.+.+..||...+|.++.+.+..+|+++|+.|.|..||+.+.
T Consensus 99 CMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~ 156 (223)
T KOG0026|consen 99 CMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVI 156 (223)
T ss_pred ehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCCeEEEeeeeeee
Confidence 9999999999999999988666789998898876556889999999999999999865
No 17
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.96 E-value=1e-27 Score=182.91 Aligned_cols=130 Identities=26% Similarity=0.438 Sum_probs=110.0
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEeh
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 105 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~ 105 (163)
|+|||++++|+.++.++|++.|+++++++++ .+.+++...++|||||+||+.++++... ..++++ +++++|+||||+
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICY 78 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECH
Confidence 6899999999999999999999999999986 3566665445779999999998876542 455666 478899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+|+.++||+|.+.+ .+++|+. .+.+++ .++||.++|+++.++++|+|.|.
T Consensus 79 G~Qll~~~lgg~v~~~~-~~~~g~~-~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~ 131 (188)
T TIGR00888 79 GMQLMAKQLGGEVGRAE-KREYGKA-ELEILD--EDDLFRGLPDESTVWMSHGDKVK 131 (188)
T ss_pred HHHHHHHhcCceEecCC-CccceeE-EEEEec--CCHhhcCCCCCcEEEeEccceee
Confidence 99999999999999987 4688986 666664 57899999999999999999873
No 18
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.95 E-value=3.2e-28 Score=185.50 Aligned_cols=132 Identities=36% Similarity=0.555 Sum_probs=110.8
Q ss_pred EEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH--hccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 28 lvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~--~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
||||++++|++++.++++++|.++++++++. +.... ...++|+|||+||+++++|.....++++++ ++++|+||||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 6899999999999999999999999999763 22232 245899999999999999865566777774 6789999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||+||.++||+|.+.+..+++|+..++..+. .+++|.++|+.|.++++|+|.|.
T Consensus 80 ~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~H~~~v~ 135 (192)
T PF00117_consen 80 LGHQILAHALGGKVVPSPEKPHHGGNIPISETP--EDPLFYGLPESFKAYQYHSDAVN 135 (192)
T ss_dssp HHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE--EHGGGTTSTSEEEEEEEECEEEE
T ss_pred ehhhhhHHhcCCccccccccccccccccccccc--ccccccccccccccccccceeee
Confidence 999999999999999876445678876666543 36899999999999999999985
No 19
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.5e-27 Score=207.02 Aligned_cols=132 Identities=48% Similarity=0.871 Sum_probs=113.8
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
||+||||+|||++++.+.|++.|.+ +.+++++..+.+++...++|+|||+|||++|.+.+...++++.+..++|+||||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC 80 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC 80 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence 5999999999999999999999985 777766656677776668999999999999987766667777777789999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+|||+|+.++||+|.+.. ..++|+.+++... ++++|+++|+.+.+++||++.|
T Consensus 81 lG~QlLa~a~Gg~V~~~~-~~~~G~~~~v~~~---~~~lf~~~~~~~~v~~~Hs~~v 133 (534)
T PRK14607 81 LGHQAIGYAFGGKIVHAK-RILHGKTSPIDHN---GKGLFRGIPNPTVATRYHSLVV 133 (534)
T ss_pred HHHHHHHHHcCCeEecCC-ccccCCceeEEEC---CCcchhcCCCCcEEeeccchhe
Confidence 999999999999999987 4578887777654 4679999999999999999987
No 20
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.95 E-value=2.6e-27 Score=179.17 Aligned_cols=129 Identities=28% Similarity=0.469 Sum_probs=105.1
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh--hHHHHHHHhCCCCCEEEEe
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~--~~~~~i~~~~~~~PvLGIC 104 (163)
|+|||++++|+.++.++|+++|+++++++++. +.++....++||||++||+.++++.. .+.+.+ ++.++|+||||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC 77 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEI--FELGVPVLGIC 77 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCcccccccccchhhHHH--HhcCCCEEEEc
Confidence 68999999999999999999999999998763 33333335899999999999877643 222222 24689999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||+|+.++||+|.+.+ .+++|+. .+.... .+++|+++|+++.++++|+|.|.
T Consensus 78 ~G~Qll~~~~gg~v~~~~-~~~~G~~-~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~ 131 (181)
T cd01742 78 YGMQLIAKALGGKVERGD-KREYGKA-EIEIDD--SSPLFEGLPDEQTVWMSHGDEVV 131 (181)
T ss_pred HHHHHHHHhcCCeEEeCC-CCcceEE-EEEecC--CChhhcCCCCceEEEcchhhhhh
Confidence 999999999999999987 4688997 555543 68899999999999999999873
No 21
>PRK00758 GMP synthase subunit A; Validated
Probab=99.95 E-value=5e-27 Score=178.49 Aligned_cols=127 Identities=27% Similarity=0.403 Sum_probs=104.3
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCC-CEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~-dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
||+|||++++|++++.++|+++|+++.+++++ .+.+++. ++ |||||+||| +..+.....++++ +.++|+||||
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC 74 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLK--ELDVPILGIC 74 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHH--hCCCCEEEEe
Confidence 49999999999999999999999999999876 4556665 56 999999998 3333333445554 3579999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||+|+.++||+|.+.+ .+++|+. .+.++. .+++|.++|+.+.++++|+|.|+
T Consensus 75 ~G~Q~L~~a~Gg~v~~~~-~~~~g~~-~i~~~~--~~~l~~~~~~~~~~~~~H~~~v~ 128 (184)
T PRK00758 75 LGHQLIAKAFGGEVGRGE-YGEYALV-EVEILD--EDDILKGLPPEIRVWASHADEVK 128 (184)
T ss_pred HHHHHHHHhcCcEEecCC-CceeeeE-EEEEcC--CChhhhCCCCCcEEEeehhhhhh
Confidence 999999999999999987 5678986 666664 57899999999999999999873
No 22
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.95 E-value=6.3e-27 Score=210.93 Aligned_cols=133 Identities=35% Similarity=0.573 Sum_probs=113.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCCCHHHHhc-----cCCCEEEeCCCCCCCCCChh---HHHHHHHhC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLELG 95 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~~~~~~~~-----~~~dgvvl~GG~~~~~d~~~---~~~~i~~~~ 95 (163)
||||+|||||||++++++.|++. |.++.++++++.+.+++.. .+||+|||+|||++|....+ ..++++++
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC- 160 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence 68999999999999999999997 9999999988666766542 37999999999999864433 35666654
Q ss_pred CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCC----ceEEeeeeeceec
Q 031223 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK----YVSISCYNIQCFA 162 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~----~~~v~~~H~~~v~ 162 (163)
.++||||||+|||+|+.++||+|.+.+ .++||....|.+. ++.||+++|+ .|.|.+||+..|+
T Consensus 161 ~~iPILGICLGhQ~i~~~~Gg~V~~~~-~~~HG~~s~I~h~---~~~lF~glp~~~~~~f~v~RYHSL~v~ 227 (918)
T PLN02889 161 RDIPILGVCLGHQALGYVHGARIVHAP-EPVHGRLSEIEHN---GCRLFDDIPSGRNSGFKVVRYHSLVID 227 (918)
T ss_pred CCCcEEEEcHHHHHHHHhcCceEEeCC-CceeeeeeeEeec---CchhhcCCCcCCCCCceEEeCCCcccc
Confidence 469999999999999999999999998 5789998888765 4679999997 5999999998874
No 23
>PLN02347 GMP synthetase
Probab=99.95 E-value=1.7e-26 Score=199.96 Aligned_cols=132 Identities=19% Similarity=0.303 Sum_probs=110.9
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh--hHHHHHHH-h-CCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLE-L-GPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~--~~~~~i~~-~-~~~~Pv 100 (163)
.+|+|||++++|++++.++++++|+.+++++++ .+.+++...++|||||||||.++++.+ .+.+.+.+ + +.++|+
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence 479999999999999999999999999999987 567777656899999999999987643 23333333 2 468999
Q ss_pred EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCc--eEEeeeeecee
Q 031223 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKY--VSISCYNIQCF 161 (163)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~--~~v~~~H~~~v 161 (163)
||||+|||+|+.++||+|.+.. .+++|+. .+.+.. +++||+++|+. +.++++|+|.|
T Consensus 90 LGIClG~QlLa~alGG~V~~~~-~~e~G~~-~v~i~~--~~~Lf~~l~~~~~~~v~~~Hsd~V 148 (536)
T PLN02347 90 LGICYGMQLIVQKLGGEVKPGE-KQEYGRM-EIRVVC--GSQLFGDLPSGETQTVWMSHGDEA 148 (536)
T ss_pred EEECHHHHHHHHHcCCEEEecC-CcccceE-EEEEcC--CChhhhcCCCCceEEEEEEEEEEe
Confidence 9999999999999999999987 5789997 566643 67899999976 89999999987
No 24
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.95 E-value=1.2e-26 Score=206.25 Aligned_cols=136 Identities=32% Similarity=0.578 Sum_probs=113.1
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 99 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~P 99 (163)
++.+++|+|||++++|.+++.++|++.|+++.+++++. ..+.+...++|+|||+|||+++.+.+. .+++++ ++.++|
T Consensus 513 ~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iP 590 (717)
T TIGR01815 513 GGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLP 590 (717)
T ss_pred CCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCC
Confidence 34668999999999999999999999999999998652 222233357999999999999987543 456666 478899
Q ss_pred EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+||||+|||+|+.++||+|.+.+ .+++|+...+.++. .+++|+++|+.+.|++||++.+
T Consensus 591 vLGICLG~QlLa~a~GG~V~~~~-~p~~G~~~~V~~~~--~~~Lf~~lp~~~~v~~~HS~~~ 649 (717)
T TIGR01815 591 VFGVCLGLQGMVEAFGGALDVLP-EPVHGKASRIRVLG--PDALFAGLPERLTVGRYHSLFA 649 (717)
T ss_pred EEEECHHHHHHhhhhCCEEEECC-CCeeCcceEEEECC--CChhhhcCCCCCEEEEECCCCc
Confidence 99999999999999999999998 47899766777654 5789999999999999999765
No 25
>PRK13566 anthranilate synthase; Provisional
Probab=99.94 E-value=2.6e-26 Score=204.37 Aligned_cols=137 Identities=34% Similarity=0.555 Sum_probs=116.3
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCC
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV 98 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~ 98 (163)
.++.+++|+||||+++|.+++.++|++.|+++++++++. +.+.+...++|+|||+|||+++.|.. ..+++++ +++++
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~i 599 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARNL 599 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCCC
Confidence 455778999999999999999999999999999999863 33444445899999999999987654 4567776 47889
Q ss_pred CEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
||||||+|||+|+.++||+|.+.. .+++|+.++|.++. +++||+++|++|.+++||++.+
T Consensus 600 PILGIClG~QlLa~alGG~V~~~~-~~~~G~~~~V~v~~--~~~Lf~~lp~~~~v~~~Hs~~v 659 (720)
T PRK13566 600 PIFGVCLGLQAIVEAFGGELGQLA-YPMHGKPSRIRVRG--PGRLFSGLPEEFTVGRYHSLFA 659 (720)
T ss_pred cEEEEehhHHHHHHHcCCEEEECC-CCccCCceEEEECC--CCchhhcCCCCCEEEEecceeE
Confidence 999999999999999999999987 46788777888775 5689999999999999999865
No 26
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.94 E-value=3.4e-26 Score=197.66 Aligned_cols=132 Identities=24% Similarity=0.464 Sum_probs=111.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh--HHHHHHHhCCCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~--~~~~i~~~~~~~PvL 101 (163)
..+|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||.++++... ..+.+ ++.++|+|
T Consensus 3 ~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~~~~PvL 79 (511)
T PRK00074 3 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FELGVPVL 79 (511)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHH--HhCCCCEE
Confidence 3579999999999999999999999999999876 4567776557899999999998876532 22222 35689999
Q ss_pred EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+|||+|+.++||+|.+.. .+++|+. .+.++. +++||+++|+++.++++|+|.|.
T Consensus 80 GIC~G~QlLa~~lGG~V~~~~-~~e~G~~-~i~i~~--~~~Lf~~l~~~~~v~~~H~d~V~ 136 (511)
T PRK00074 80 GICYGMQLMAHQLGGKVERAG-KREYGRA-ELEVDN--DSPLFKGLPEEQDVWMSHGDKVT 136 (511)
T ss_pred EECHHHHHHHHHhCCeEEecC-CcccceE-EEEEcC--CChhhhcCCCceEEEEECCeEEE
Confidence 999999999999999999987 5789986 676654 57899999999999999999884
No 27
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.94 E-value=1e-25 Score=177.59 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=107.7
Q ss_pred CCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hC
Q 031223 24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LG 95 (163)
Q Consensus 24 ~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~ 95 (163)
.++|+||+|... ..+.+.++|++.|..+++++++..........++|+|||+|||.++++.. ...++|++ ++
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~ 81 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA 81 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence 356999998655 57789999999999999998653221111224799999999999887642 24677777 46
Q ss_pred CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceecC
Q 031223 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFAH 163 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~~ 163 (163)
.++|+||||+|+|+|+.++||+|.+.+ ++|.|+. +|.+++ +..++++ ++|.++.+++||+|++++
T Consensus 82 ~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~-~i~~t~~g~~~pl~-~~~~~~~~~~~H~d~~~l 147 (234)
T PRK07053 82 AGLPTLGICLGAQLIARALGARVYPGG-QKEIGWA-PLTLTDAGRASPLR-HLGAGTPVLHWHGDTFDL 147 (234)
T ss_pred CCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEE-EEEEeccccCChhh-cCCCcceEEEEeCCEEec
Confidence 789999999999999999999999976 6899997 677654 3356664 688889999999999864
No 28
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.93 E-value=5.9e-25 Score=173.68 Aligned_cols=133 Identities=20% Similarity=0.350 Sum_probs=103.8
Q ss_pred CCCeEEEEECCC-ChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChh----HHHHHHH-h
Q 031223 23 NKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLE-L 94 (163)
Q Consensus 23 ~~~~Ilvid~~~-~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~----~~~~i~~-~ 94 (163)
.+++|+||+|.+ ++..++.++|++.|.+++++++... .++++ .+||++||+|||++++|... +.++|++ +
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~ 83 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVPL 83 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHHH
Confidence 457899998876 5899999999999999999876421 11223 37999999999999887643 3567776 4
Q ss_pred CCCCCEEEEehHHHHHHHHhCCeeeeCCCcc-cccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV-MHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~-e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
++++|+||||+|||+||.++||+|.+.+.+. +.|+. .+.+++ ..+++.++| ..+++||+|+++
T Consensus 84 ~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~-~i~~~~--~~~~~~~~~--~~~~~~H~d~~~ 147 (239)
T PRK06490 84 KENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYY-PLRPTE--AGRALMHWP--EMVYHWHREGFD 147 (239)
T ss_pred HCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceE-EeEECC--CcccccCCC--CEEEEECCcccc
Confidence 7889999999999999999999999986554 78986 677764 334555665 469999999754
No 29
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.93 E-value=8.7e-25 Score=172.36 Aligned_cols=135 Identities=20% Similarity=0.242 Sum_probs=106.2
Q ss_pred CeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCC----h-----hHHHHHH
Q 031223 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS----G-----ISLQTVL 92 (163)
Q Consensus 25 ~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~----~-----~~~~~i~ 92 (163)
|||+||.+..- -...+..++++.|+++.++..... +.++ ..+||++||+|||+++.+. + ...++|+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g--~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~ 78 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG--EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN 78 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC--CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence 58999987543 366788999999999988765421 1221 2479999999999886531 1 2356777
Q ss_pred Hh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceecC
Q 031223 93 EL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFAH 163 (163)
Q Consensus 93 ~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~~ 163 (163)
++ ++++|+||||+|+|+|+.++||+|.+.+ .+|+|+. ++.+++ +..+++|+++|+++.+++||+|.+++
T Consensus 79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~-~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~l 149 (235)
T PRK08250 79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSP-EKEIGYF-PITLTEAGLKDPLLSHFGSTLTVGHWHNDMPGL 149 (235)
T ss_pred HHHHcCCCEEEEChhHHHHHHHhCceeccCC-CCceeEE-EEEEccccccCchhhcCCCCcEEEEEecceecC
Confidence 74 7889999999999999999999999988 4789997 777764 44688999999999999999998753
No 30
>PRK05665 amidotransferase; Provisional
Probab=99.92 E-value=2e-24 Score=170.69 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=100.1
Q ss_pred CCeEEEEECCC----------ChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh----H
Q 031223 24 KNPIIVIDNYD----------SFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----S 87 (163)
Q Consensus 24 ~~~Ilvid~~~----------~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~----~ 87 (163)
.|||+|+..+. +|...+.+.|.+.+. ++.++......... ...+|||+||+||+.++++... +
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~-~~~~~dgiiitGs~~~v~~~~pwi~~l 80 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA-DDEKFDAYLVTGSKADSFGTDPWIQTL 80 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC-CcccCCEEEECCCCCCccccchHHHHH
Confidence 45799995543 344446667777664 45555432211111 1247999999999999886533 4
Q ss_pred HHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 88 LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 88 ~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
.++|++ +++++|+||||+|||+||.|+||+|.+.+.+++.|+. .+.+++ .+++|+.+++++.+++||+|+|.
T Consensus 81 ~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~-~~~~~~--~~~~~~~~~~~~~~~~~H~D~V~ 153 (240)
T PRK05665 81 KTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIH-RYQLAA--HAPWMSPAVTELTLLISHQDQVT 153 (240)
T ss_pred HHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceE-EEEecC--CCccccCCCCceEEEEEcCCeee
Confidence 667777 4778999999999999999999999998767788886 566664 46799999999999999999974
No 31
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.92 E-value=4.4e-24 Score=191.01 Aligned_cols=136 Identities=26% Similarity=0.493 Sum_probs=105.5
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHc-C--CEEEEEeCCCCCHHHHh-ccCCCEEEeCCCCCCCCCChh--HHHHHHHh-
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-G--YHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGI--SLQTVLEL- 94 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~-G--~~~~v~~~~~~~~~~~~-~~~~dgvvl~GG~~~~~d~~~--~~~~i~~~- 94 (163)
+..+|||+|||+|||++++++.|++. | +.+.+++++....+.+. ..+||+|||+|||+++.+... +...+.+.
T Consensus 3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~ 82 (742)
T TIGR01823 3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELA 82 (742)
T ss_pred CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhc
Confidence 44579999999999999999999986 3 56788887643322222 237999999999999875433 22222222
Q ss_pred -CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 95 -GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
..++|+||||+|||+|+.++||+|.+.+ .++||+.+.+.+. .+++|.+++. +.+++||++.|.
T Consensus 83 ~~~~iPvLGIClG~QlLa~a~GG~v~~~~-~~~hG~~~~v~~~---~~~lf~gl~~-~~v~~~Hs~~v~ 146 (742)
T TIGR01823 83 NLDEVPVLGICLGFQSLCLAQGADISRLP-TPKHGQVYEMHTN---DAAIFCGLFS-VKSTRYHSLYAN 146 (742)
T ss_pred ccCCCcEEEEchhhHHHHhhcCCEEEECC-CCCcCeEEEEEEC---CccccCCCCC-CceeEEEEEEcc
Confidence 2469999999999999999999999998 4689987777765 4679999986 999999999873
No 32
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.92 E-value=1.8e-24 Score=170.75 Aligned_cols=126 Identities=22% Similarity=0.289 Sum_probs=98.4
Q ss_pred CCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHH-hCCCCCEEEEehH
Q 031223 33 YDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMG 106 (163)
Q Consensus 33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~-~~~~~PvLGIC~G 106 (163)
++.|...+.+.+...|.++++++.... .++++ .+||||||+|||.++++.. .+.++|++ ++.++|+||||+|
T Consensus 20 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G 97 (237)
T PRK09065 20 YGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYG 97 (237)
T ss_pred cCCHHHHHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChh
Confidence 344566667777778899888876532 12222 3799999999999887653 24667777 4678999999999
Q ss_pred HHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeecee
Q 031223 107 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 107 ~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
||+|+.++||+|.+.+.+++.|+. .|++++ +..+++|+++|+.|.+++||+|.|
T Consensus 98 ~Qlla~alGg~V~~~~~g~e~G~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v 152 (237)
T PRK09065 98 HQLLAHALGGEVGYNPAGRESGTV-TVELHPAAADDPLFAGLPAQFPAHLTHLQSV 152 (237)
T ss_pred HHHHHHHcCCccccCCCCCccceE-EEEEccccccChhhhcCCccCcEeeehhhhh
Confidence 999999999999988656788986 676654 335789999999999999999986
No 33
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.91 E-value=5.4e-24 Score=168.50 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=99.5
Q ss_pred EEEEECCCChH---HHHHHHHHHcCCE---EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-----hh---HH----
Q 031223 27 IIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GI---SL---- 88 (163)
Q Consensus 27 Ilvid~~~~~~---~~~~~~l~~~G~~---~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-----~~---~~---- 88 (163)
|+|++++.... ..+.+++++.|.. +.+++.+.......+..+||||||+||+++++|. +. +.
T Consensus 4 ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~ 83 (242)
T PRK07567 4 FLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELS 83 (242)
T ss_pred EEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHH
Confidence 89998876533 5688888888765 5555544221111122479999999999998875 11 12
Q ss_pred HHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceec
Q 031223 89 QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 89 ~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
++++. +++++|+||||+|||+||.++||+|.+.. +++.|+. .+.+++ +..+++|.++|..|.+++||+|.|.
T Consensus 84 ~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~-g~e~G~~-~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~ 157 (242)
T PRK07567 84 GLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTY-GEPVGAV-TVSLTDAGRADPLLAGLPDTFTAFVGHKEAVS 157 (242)
T ss_pred HHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCC-CCcCccE-EEEECCccCCChhhcCCCCceEEEeehhhhhh
Confidence 23333 26889999999999999999999999844 6788986 777764 3357899999999999999999873
No 34
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.91 E-value=1.6e-23 Score=158.70 Aligned_cols=122 Identities=25% Similarity=0.390 Sum_probs=96.2
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEeh
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~ 105 (163)
|+|||+++++ ++.++|++.|+.+++++++ .+.+++...++|||||+|||+++.+.....++++++ ++++|+||||+
T Consensus 1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~ 77 (178)
T cd01744 1 VVVIDFGVKH--NILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL 77 (178)
T ss_pred CEEEecCcHH--HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence 6899998765 7899999999999999987 345555445899999999998887766666778874 67899999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|+|+|+.++||+|.+.+. ..+|..+++.... . ...+.+++||+++|
T Consensus 78 G~Q~l~~~~Gg~v~~~~~-~~~g~~~~v~~~~--~-------~~~~~v~~~H~~~v 123 (178)
T cd01744 78 GHQLLALALGAKTYKMKF-GHRGSNHPVKDLI--T-------GRVYITSQNHGYAV 123 (178)
T ss_pred HHHHHHHHcCCceecCCC-CCCCCceeeEEcC--C-------CCcEEEEcCceEEE
Confidence 999999999999998763 3456666665432 1 13456888999887
No 35
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=170.24 Aligned_cols=141 Identities=26% Similarity=0.436 Sum_probs=111.3
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~ 85 (163)
+.+..|.. .+.. -....+|++||+ +..+++.|.|.+.|+.+.++|++ .+.+++.+.+||||+||-||++|...+
T Consensus 164 ~~~~~~~~-~~~~--~~~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~ 237 (368)
T COG0505 164 KEPYTWPG-LNGG--GEPGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLD 237 (368)
T ss_pred CCceeccc-cccC--CCCCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHH
Confidence 44445555 2211 334578999999 57889999999999999999987 678888778999999999999998777
Q ss_pred hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
...+.++++ ...+|+||||+|||+||.|+||+..+++.+ ++|.+|+++-.. .+ .-....+.|+++|+
T Consensus 238 ~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFG-HrG~NhPV~dl~-------tg--rv~ITSQNHGyaVd 305 (368)
T COG0505 238 YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFG-HRGANHPVKDLD-------TG--RVYITSQNHGYAVD 305 (368)
T ss_pred HHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccC-CCCCCcCccccc-------CC--eEEEEecCCceecC
Confidence 778888985 666799999999999999999999999976 578888876211 11 23456677887775
No 36
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.90 E-value=2.8e-23 Score=174.01 Aligned_cols=124 Identities=29% Similarity=0.468 Sum_probs=100.1
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
.+|+++|+ +..+++.++|+++|+.++++|++ .+.+++.+.++|||||||||++|.+.....+.++++..++|+||||
T Consensus 241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC 317 (415)
T PLN02771 241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC 317 (415)
T ss_pred CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence 58999998 46899999999999999999987 4667776668999999999999987766677777754579999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+|||+||.|+||++.+++.+ ++|.++++.... ... -..+.++|+++|
T Consensus 318 LGhQlLa~AlGGkv~K~~~G-h~G~n~pV~~~~--~~~-------v~itsqnHg~aV 364 (415)
T PLN02771 318 MGHQLLGQALGGKTFKMKFG-HHGGNHPVRNNR--TGR-------VEISAQNHNYAV 364 (415)
T ss_pred HHHHHHHHhcCCeEEECCCC-cccceEEEEECC--CCC-------EEEEecCHHHhh
Confidence 99999999999999999854 578888876432 111 124567777766
No 37
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=1.9e-23 Score=160.47 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=100.9
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHHh-CCCCC
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVP 99 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~~-~~~~P 99 (163)
|+|||++.++.+.+.++|+++|+++++++.. +++. ++|+|||+|| +.+.+. ....++++++ ++++|
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p 73 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP 73 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 6899999999999999999999999998742 3444 7999999665 433221 1245677774 68899
Q ss_pred EEEEehHHHHHHHH------------hCCeeeeCCCc-----ccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 100 LFGVCMGLQCIGEA------------FGGKIVRSPLG-----VMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 100 vLGIC~G~QlLa~a------------~Gg~v~~~~~~-----~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+||||+|+|+|+.+ +||+|.+.+.+ +++|+. .+...+ ++++|+++|+.+.+++||+++|+
T Consensus 74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~-~v~~~~--~~~lf~~l~~~~~v~~~Hs~~v~ 150 (198)
T cd01748 74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWN-QLEITK--ESPLFKGIPDGSYFYFVHSYYAP 150 (198)
T ss_pred EEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccc-eEEECC--CChhhhCCCCCCeEEEEeEEEEe
Confidence 99999999999998 88999987531 478997 566554 67899999999999999999984
No 38
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.90 E-value=3.2e-23 Score=159.34 Aligned_cols=126 Identities=19% Similarity=0.267 Sum_probs=97.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh------HHHHHHHhCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV 98 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~------~~~~i~~~~~~~ 98 (163)
|||+|||++.++..++.++|++.|+++++++. .+++. ++|+||| +|++++.+... +.+.+++ .++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~--~~~ 71 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIKA--CTQ 71 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHHH--cCC
Confidence 68999999999999999999999999998863 34554 6899999 55565543321 2334443 469
Q ss_pred CEEEEehHHHHHHHHhC------------CeeeeCC----CcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 99 PLFGVCMGLQCIGEAFG------------GKIVRSP----LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~G------------g~v~~~~----~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|+||||+|||+|+.+++ |+|.+.+ ..++.||. .|...+ ++++|+++|+.+.+++||++.++
T Consensus 72 PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~-~v~~~~--~~~l~~~l~~~~~v~~~Hs~~lp 148 (196)
T PRK13170 72 PVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWN-QVTPQA--GHPLFQGIEDGSYFYFVHSYAMP 148 (196)
T ss_pred CEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccc-eeEeCC--CChhhhCCCcCCEEEEECeeecC
Confidence 99999999999999972 4666642 13678996 676654 67899999999999999999763
No 39
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.90 E-value=4.6e-23 Score=159.91 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=99.6
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHHh-C
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-G 95 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~~-~ 95 (163)
|||+|||++.++.+++.++|++.|+ ++.+++ +.+++. ++|+|||+|+.....+.. ....+++.. +
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLA 75 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHh
Confidence 6899999999999999999999998 555543 345664 899999988643222211 123344443 5
Q ss_pred CCCCEEEEehHHHHHHHH------------hCCeeeeC-C-----CcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223 96 PTVPLFGVCMGLQCIGEA------------FGGKIVRS-P-----LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a------------~Gg~v~~~-~-----~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H 157 (163)
+++|+||||+|||+|+.+ ++|+|.+. + ..+++||. .++..+ +++||+++|+.+.+++||
T Consensus 76 ~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~-~v~~~~--~~~lf~~~~~~~~v~~~H 152 (209)
T PRK13146 76 AGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWN-TVDQTR--DHPLFAGIPDGARFYFVH 152 (209)
T ss_pred CCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChH-HeeeCC--CChhccCCCCCCEEEEEe
Confidence 889999999999999999 89999986 1 13578997 666654 689999999999999999
Q ss_pred eceec
Q 031223 158 IQCFA 162 (163)
Q Consensus 158 ~~~v~ 162 (163)
+|+|.
T Consensus 153 s~~v~ 157 (209)
T PRK13146 153 SYYAQ 157 (209)
T ss_pred EEEEE
Confidence 99984
No 40
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.89 E-value=2.2e-22 Score=167.10 Aligned_cols=126 Identities=29% Similarity=0.427 Sum_probs=101.1
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (163)
+.+|++||++ ...++.++|++.|+.+.+++++ .+.+++...++|||||+|||+++.+.....++++++ ++++|+||
T Consensus 177 ~~~I~viD~G--~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG 253 (360)
T PRK12564 177 KYKVVAIDFG--VKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG 253 (360)
T ss_pred CCEEEEEeCC--cHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 4689999995 6788999999999999999987 456677555799999999999887655566777774 57899999
Q ss_pred EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
||+|||+|+.++||++.+++.+ .+|..+++..... +..+.+.++|+++|+
T Consensus 254 IClG~QlLa~a~Gg~v~kl~~g-h~G~~~pv~~~~~---------~~~~its~~H~~~V~ 303 (360)
T PRK12564 254 ICLGHQLLALALGAKTYKMKFG-HRGANHPVKDLET---------GKVEITSQNHGFAVD 303 (360)
T ss_pred ECHHHHHHHHHhCCcEeccCCC-ccCCceeeEECCC---------CcEEEEecCcccEEc
Confidence 9999999999999999998743 5687777765421 123567788888873
No 41
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.89 E-value=2.2e-22 Score=166.66 Aligned_cols=124 Identities=25% Similarity=0.430 Sum_probs=99.2
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (163)
+.+|++||+ ++..++.++|++.|+.+++++++ .+.+++...++|||||+|||++|.+.....+.++++ ++ +|+||
T Consensus 167 ~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlG 242 (354)
T PRK12838 167 GKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILG 242 (354)
T ss_pred CCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEE
Confidence 578999999 58999999999999999999986 456666556899999999999987766666777775 44 99999
Q ss_pred EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
||+|||+|+.|+||++.+.+.+ ++|..+++.... .+. .+.+.++|+++|
T Consensus 243 IClG~QlLa~a~Gg~v~kl~~g-h~G~~hpV~~~~--~~~-------~~~ts~~H~~aV 291 (354)
T PRK12838 243 ICLGHQLIALALGADTEKLPFG-HRGANHPVIDLT--TGR-------VWMTSQNHGYVV 291 (354)
T ss_pred ECHHHHHHHHHhCCEEecCCCC-ccCCceEEEECC--CCe-------EEEeccchheEe
Confidence 9999999999999999998744 578888887643 111 234556777766
No 42
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.89 E-value=4e-22 Score=151.71 Aligned_cols=135 Identities=22% Similarity=0.311 Sum_probs=103.9
Q ss_pred eEEEEECCCCh-HHHHHHHHHHcC---CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CCC----hhHHHHHHH-hC
Q 031223 26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDS----GISLQTVLE-LG 95 (163)
Q Consensus 26 ~Ilvid~~~~~-~~~~~~~l~~~G---~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d~----~~~~~~i~~-~~ 95 (163)
||+|+++.... ...+.++|+++| ++++++++..... .....++|||||+||+.++ .+. ....+++++ .+
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~ 79 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA 79 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH
Confidence 58888775443 567889999998 6888888753222 1122489999999999887 332 224666776 47
Q ss_pred CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceec
Q 031223 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+++|++|||+|+|+|+.++||+|.+.+.+++.|+. .+.+++ +..+++|+++|+.+.++++|++.|.
T Consensus 80 ~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~ 146 (188)
T cd01741 80 AGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWF-PVTLTEAGKADPLFAGLPDEFPVFHWHGDTVV 146 (188)
T ss_pred CCCCEEEECccHHHHHHHhCCEEecCCCcceeEEE-EEEeccccccCchhhcCCCcceEEEEeccChh
Confidence 88999999999999999999999998866677885 677664 2356789999999999999999885
No 43
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.89 E-value=2.6e-22 Score=166.45 Aligned_cols=125 Identities=27% Similarity=0.440 Sum_probs=97.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
.+|++||+ +...++.++|+++|+.+++++++ .+.+++....+|||||+|||+++.+.....++++++-+++|+||||
T Consensus 174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC 250 (358)
T TIGR01368 174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC 250 (358)
T ss_pred cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 58999999 56789999999999999999987 4566765556899999999998876655667777753389999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||+|+.|+||++.+++.+ .+|..+++.... .. .-+.+.++|+++|+
T Consensus 251 lG~QlLa~a~Gg~v~kl~~g-h~G~nhpV~~~~--~~-------~v~itsqnH~~aV~ 298 (358)
T TIGR01368 251 LGHQLLALAFGAKTYKMKFG-HRGGNHPVKDLI--TG-------RVEITSQNHGYAVD 298 (358)
T ss_pred HHHHHHHHHhCCceeccCcC-cCCCceeeEECC--CC-------cEEEeecCCCcEEc
Confidence 99999999999999998753 578877776432 11 12344566777663
No 44
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=1.8e-22 Score=155.27 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=99.4
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV 98 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~~ 98 (163)
||+|||++.++..++.++|+++|++++++.. .+++. ++|+||++|| +++... ..+.+.+++ .++++
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~ 73 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQ 73 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCC
Confidence 4999999999999999999999999988742 34554 7999998665 433211 113455665 46889
Q ss_pred CEEEEehHHHHHHHH-----------hCCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 99 PLFGVCMGLQCIGEA-----------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 99 PvLGIC~G~QlLa~a-----------~Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|+||||+|+|+|+.+ +|++|.+.+. .+++||. .++... +++||+++|+.+.+++||++.+.
T Consensus 74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~-~v~~~~--~~~lf~~l~~~~~~~~~Hs~~v~ 149 (199)
T PRK13181 74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWN-SVKPLK--ESPLFKGIEEGSYFYFVHSYYVP 149 (199)
T ss_pred CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCcc-ccccCC--CChhHcCCCCCCEEEEeCeeEec
Confidence 999999999999999 7899998652 2578996 565543 68999999999999999999873
No 45
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.88 E-value=9.1e-22 Score=164.15 Aligned_cols=106 Identities=29% Similarity=0.532 Sum_probs=87.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (163)
+++|++||+ ++..++.++|+++|+++.+++++ .+.+++...++|||||+|||+++.+.....+.++++ +.++|+||
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilG 268 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFG 268 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEE
Confidence 578999999 68889999999999999999886 566777666899999999999987665556666664 56899999
Q ss_pred EehHHHHHHHHhCCeeeeCCCcccccceeEE
Q 031223 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 133 (163)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i 133 (163)
||+|||+|+.++||++.+++.+ +.|..+++
T Consensus 269 IClGhQlLa~a~Gg~v~k~~~G-h~g~n~pv 298 (382)
T CHL00197 269 ICMGHQILSLALEAKTFKLKFG-HRGLNHPS 298 (382)
T ss_pred EcHHHHHHHHHhCCEEeccCCC-CCCCCEec
Confidence 9999999999999999998744 34544443
No 46
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=1e-21 Score=151.46 Aligned_cols=127 Identities=18% Similarity=0.264 Sum_probs=96.8
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh------HHHHHHH--hCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPT 97 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~------~~~~i~~--~~~~ 97 (163)
||+|||++.++.+++.++|++.|+++.+++. .+++. ++|+||| +|++++.+... +.+.+++ ++++
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~ 73 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQK 73 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCC
Confidence 3899999999999999999999999888764 34554 6999999 55566544311 2344444 3678
Q ss_pred CCEEEEehHHHHHHHH------------hCCeeeeCCC-----cccccceeEEEeCCCCcCccccCCCCceEEeeeeece
Q 031223 98 VPLFGVCMGLQCIGEA------------FGGKIVRSPL-----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQC 160 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a------------~Gg~v~~~~~-----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~ 160 (163)
+|+||||+|||+|+.+ ++|+|.+... .++.||. .+.+.. +++||+++|+++.+++||++.
T Consensus 74 ~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~-~v~~~~--~~~l~~~l~~~~~~~~vHS~~ 150 (201)
T PRK13152 74 KPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWN-ELEILK--QSPLYQGIPEKSDFYFVHSFY 150 (201)
T ss_pred CcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeE-EEEECC--CChhhhCCCCCCeEEEEcccE
Confidence 9999999999999997 1277876431 1356775 677654 688999999999999999998
Q ss_pred ec
Q 031223 161 FA 162 (163)
Q Consensus 161 v~ 162 (163)
+.
T Consensus 151 v~ 152 (201)
T PRK13152 151 VK 152 (201)
T ss_pred ee
Confidence 74
No 47
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.87 E-value=8.3e-22 Score=153.01 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=97.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT 97 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~~~ 97 (163)
++|.|||.+.++..++.++|+.+|+++.+++.+ +++. ++|+||+ ||++++.... .+.+.+++ ++++
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~ 74 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEG 74 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcC
Confidence 479999999899999999999999999988642 4453 6899887 5556654221 12344555 4678
Q ss_pred CCEEEEehHHHHHHHH-----------hCCeeeeCC-----CcccccceeEEEeCCCC----cCccccCCCCceEEeeee
Q 031223 98 VPLFGVCMGLQCIGEA-----------FGGKIVRSP-----LGVMHGKSSLVYYDEKG----EDGLLAGLSKYVSISCYN 157 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a-----------~Gg~v~~~~-----~~~e~G~~~~i~~~~~~----~~~lf~~lp~~~~v~~~H 157 (163)
+|+||||+|||+|+.. ++|+|.+.+ .-|++||. .+..+... +++||+++|+.+.+++||
T Consensus 75 ~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~-~v~~~~~~~~~~~~~lf~~l~~~~~v~~~H 153 (210)
T CHL00188 75 NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWN-RLECQNSECQNSEWVNWKAWPLNPWAYFVH 153 (210)
T ss_pred CCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCc-cceecCCcccccCChhhcCCCCCCEEEEeC
Confidence 9999999999999987 467777763 13678997 56655311 156999999999999999
Q ss_pred ecee
Q 031223 158 IQCF 161 (163)
Q Consensus 158 ~~~v 161 (163)
++.|
T Consensus 154 S~~v 157 (210)
T CHL00188 154 SYGV 157 (210)
T ss_pred ccEe
Confidence 9987
No 48
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.87 E-value=6.6e-22 Score=151.97 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=97.7
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-h---h--HHHHHHH-hCCCCC
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-G---I--SLQTVLE-LGPTVP 99 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~---~--~~~~i~~-~~~~~P 99 (163)
|+|||++.++...+.++|+..|+++++++.+ ++++ ++|+||++|+ +++.+. + . ...++++ ++.++|
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~p 73 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKP 73 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence 6899999999999999999999999999743 3443 7999999663 443221 1 1 2334354 478899
Q ss_pred EEEEehHHHHHHHH------------hCCeeeeCC--CcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 100 LFGVCMGLQCIGEA------------FGGKIVRSP--LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 100 vLGIC~G~QlLa~a------------~Gg~v~~~~--~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+||||+|+|+|+.+ +||+|.+.+ ..+++||. .+.... +++||+++|+++.+++||+++|+
T Consensus 74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~-~~~~~~--~~~l~~~l~~~~~v~~~Hs~~v~ 147 (196)
T TIGR01855 74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWN-EVHPVK--ESPLLNGIDEGAYFYFVHSYYAV 147 (196)
T ss_pred EEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCe-eeeeCC--CChHHhCCCCCCEEEEECeeEec
Confidence 99999999999999 789998874 13578886 455443 67899999999999999999985
No 49
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.9e-21 Score=148.00 Aligned_cols=128 Identities=22% Similarity=0.299 Sum_probs=100.4
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT 97 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~~~ 97 (163)
++|+|||.+.++.+++.++|++.|+++.+.. +.+++. +.|+||+ +|.++..+.. .+.+.|++ ...+
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~----d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~~ 74 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSR----DPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVESG 74 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEec----CHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhcC
Confidence 6799999999999999999999999998874 256665 7999999 6666654432 24566666 4677
Q ss_pred CCEEEEehHHHHHHHH------------hCCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 98 VPLFGVCMGLQCIGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a------------~Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+|+||||+|||+|... +.|+|.+.+. -|+.||+ .+...+ +++||+++++.-++|+.|||.+
T Consensus 75 kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN-~l~~~~--~~~l~~gi~~~~~~YFVHSY~~ 151 (204)
T COG0118 75 KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWN-QVEFVR--GHPLFKGIPDGAYFYFVHSYYV 151 (204)
T ss_pred CCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccc-eeeccC--CChhhcCCCCCCEEEEEEEEee
Confidence 9999999999999875 2367877653 2578998 455443 7899999998789999999987
Q ss_pred c
Q 031223 162 A 162 (163)
Q Consensus 162 ~ 162 (163)
.
T Consensus 152 ~ 152 (204)
T COG0118 152 P 152 (204)
T ss_pred c
Confidence 5
No 50
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.87 E-value=3.6e-22 Score=166.07 Aligned_cols=137 Identities=23% Similarity=0.383 Sum_probs=114.9
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC--hhHHHHHHHhCC
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--GISLQTVLELGP 96 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~--~~~~~~i~~~~~ 96 (163)
....+..+|+|+|++.+|.+.+.|++|++.+..+++|.+ .+...+....|.||||||||.+++++ +.+...+.++.
T Consensus 11 ~~~~~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~- 88 (552)
T KOG1622|consen 11 EVSSYFDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG- 88 (552)
T ss_pred cccccCceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC-
Confidence 344566789999999999999999999999999999976 45667766789999999999998865 45677777766
Q ss_pred CCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCce--EEeeeeeceec
Q 031223 97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYV--SISCYNIQCFA 162 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~--~v~~~H~~~v~ 162 (163)
+|+||||+|||+|+..+||.|.+.. ..|.|.. .|...+ ..+||+++-.+. .|+..|+|.+.
T Consensus 89 -vpvLGICYGmQ~i~~~~Gg~V~~~~-~RE~G~~-eI~v~~--~~~lF~~~~~~~~~~VlltHgdsl~ 151 (552)
T KOG1622|consen 89 -VPVLGICYGMQLINKLNGGTVVKGM-VREDGED-EIEVDD--SVDLFSGLHKTEFMTVLLTHGDSLS 151 (552)
T ss_pred -CcceeehhHHHHHHHHhCCcccccc-ccCCCCc-eEEcCc--hhhhhhhhcccceeeeeeccccchh
Confidence 9999999999999999999999987 5688986 777765 567999886554 49999999863
No 51
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=2.2e-21 Score=149.81 Aligned_cols=127 Identities=22% Similarity=0.270 Sum_probs=99.6
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV 98 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~~ 98 (163)
+|+|||++.++..++.++|++.|+++++++. .+++. ++|+|||+|| +.+.+. ....+++++ .++++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~ 73 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGK 73 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCC
Confidence 5899999999999999999999999999753 34554 7999999775 322221 124566776 46889
Q ss_pred CEEEEehHHHHHHHH------------hCCeeeeCCC-----cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 99 PLFGVCMGLQCIGEA------------FGGKIVRSPL-----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 99 PvLGIC~G~QlLa~a------------~Gg~v~~~~~-----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|+||||+|+|+|+.+ +||++.+.+. .++.|+. .+.+++ +++||+++|+.+.++.+|++.+
T Consensus 74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~-~i~~~~--~~~l~~~l~~~~~v~~~Hs~~v 150 (205)
T PRK13141 74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWN-QLELKK--ESPLLKGIPDGAYVYFVHSYYA 150 (205)
T ss_pred cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCc-cceeCC--CChhhhCCCCCCEEEEECeeEe
Confidence 999999999999997 6789987641 2356775 566654 6899999999999999999987
Q ss_pred c
Q 031223 162 A 162 (163)
Q Consensus 162 ~ 162 (163)
.
T Consensus 151 ~ 151 (205)
T PRK13141 151 D 151 (205)
T ss_pred c
Confidence 3
No 52
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=1.7e-20 Score=145.66 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hCCCCC
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP 99 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~~~~P 99 (163)
|+|||++.++..++.++++..+.++..++ +.+++. ++|+||++|+ +++.+.. .+.+.+++ +.+++|
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~----~~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~p 74 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS----DPETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKP 74 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEEC----CHHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence 89999999999999999999998887664 245664 7999998666 5443221 23455555 578899
Q ss_pred EEEEehHHHHHHHHhC------------------CeeeeCC----CcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223 100 LFGVCMGLQCIGEAFG------------------GKIVRSP----LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157 (163)
Q Consensus 100 vLGIC~G~QlLa~a~G------------------g~v~~~~----~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H 157 (163)
+||||+|||+|+.+++ |+|.+.+ .-++.||. .+..++..++++|+++|+.+++++||
T Consensus 75 ilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~-~v~~~~~~~~~lf~~l~~~~~v~~~H 153 (210)
T PRK14004 75 LFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWN-RLQIRRKDKSKLLKGIGDQSFFYFIH 153 (210)
T ss_pred EEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcc-cceeccCCCCccccCCCCCCEEEEec
Confidence 9999999999999764 6666542 13678998 56554323678999999999999999
Q ss_pred ecee
Q 031223 158 IQCF 161 (163)
Q Consensus 158 ~~~v 161 (163)
+|.+
T Consensus 154 S~~~ 157 (210)
T PRK14004 154 SYRP 157 (210)
T ss_pred eeec
Confidence 9865
No 53
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=2.3e-20 Score=143.82 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=96.9
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP 99 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~~~P 99 (163)
|||+|||+++++...+.++|+++|+++++++. .++++ ++|++||+|| +.+.+. ....+.++++ ++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~P 73 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKP 73 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999988853 34444 7999999775 322221 1246667764 78899
Q ss_pred EEEEehHHHHHHHH------------hCCeeeeCCC---cccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 100 LFGVCMGLQCIGEA------------FGGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 100 vLGIC~G~QlLa~a------------~Gg~v~~~~~---~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+||||+|+|+|+.+ +||++.+.+. ..+.|+. .+.... ++++|++++ .+.+++||++.+.
T Consensus 74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~-~v~~~~--~~~l~~~l~-~~~~~~~Hs~~~~ 147 (200)
T PRK13143 74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWN-TVKVVK--DCPLFEGID-GEYVYFVHSYYAY 147 (200)
T ss_pred EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecce-EEEEcC--CChhhccCC-CcEEEEEeeeeeC
Confidence 99999999999986 6888887642 1345786 566653 688999995 4568899999874
No 54
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.83 E-value=1.2e-19 Score=138.76 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=91.1
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP 99 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~~~P 99 (163)
|+|.|+++.+.+... .++|+..|+++..++. .+++. ++|+|||+||+.+..+. ..+.++++++ ++++|
T Consensus 2 m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P 74 (189)
T PRK13525 2 MKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP 74 (189)
T ss_pred CEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe
Confidence 579999987666655 5779999999888863 24443 79999999998765432 1235677774 78899
Q ss_pred EEEEehHHHHHHHHhCC-----------eeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 100 LFGVCMGLQCIGEAFGG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 100 vLGIC~G~QlLa~a~Gg-----------~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+||||+|+|+|+.++|| ++.+.+.+++.|.. . .+++|+++++++.+++||+|.|.
T Consensus 75 ilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~-----~---~~~~~~~~~~~~~~~~~H~d~v~ 140 (189)
T PRK13525 75 VFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF-----E---AELDIKGLGEPFPAVFIRAPYIE 140 (189)
T ss_pred EEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE-----E---ecccccCCCCCeEEEEEeCceee
Confidence 99999999999999998 45544433333321 1 35678888889999999999883
No 55
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.82 E-value=9.6e-20 Score=140.29 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=94.3
Q ss_pred eEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHH-hCCCCC
Q 031223 26 PIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVP 99 (163)
Q Consensus 26 ~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~-~~~~~P 99 (163)
-|+++++... +...+.++|++.|.+++++..+ +.+++. ++|+|||+||+.++.+. ..+.++|++ +++++|
T Consensus 4 ~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~--~~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 79 (200)
T PRK13527 4 GVLALQGDVEEHIDALKRALDELGIDGEVVEVR--RPGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLP 79 (200)
T ss_pred EEEEECCccHHHHHHHHHHHHhcCCCeEEEEeC--ChHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCe
Confidence 4566665322 4557889999999988888764 234444 79999999998765321 124677777 468899
Q ss_pred EEEEehHHHHHHHHhCCe-eeeCCCcccccceeEEEeCC---C------CcCccccCCCCceEEeeeeeceec
Q 031223 100 LFGVCMGLQCIGEAFGGK-IVRSPLGVMHGKSSLVYYDE---K------GEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~-v~~~~~~~e~G~~~~i~~~~---~------~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+||||+|+|+|+.++||+ +...+ .+++|+. +++++. + ..+++|.++|+++.++++|++.|+
T Consensus 80 ilGIC~G~Qll~~~~gg~~v~~~~-~~~lG~~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~ 150 (200)
T PRK13527 80 ILGTCAGLILLAKEVGDDRVTKTE-QPLLGLM-DVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAIT 150 (200)
T ss_pred EEEECHHHHHHHhhhcCCccCCCC-Cceeeee-EEEEeeccccCccccEEEeEeccccCCcceEEEEcccccc
Confidence 999999999999999984 44444 5678886 443321 1 124678889999999999999874
No 56
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.4e-18 Score=147.30 Aligned_cols=142 Identities=26% Similarity=0.444 Sum_probs=102.7
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCH----HHHhc-cCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTV----EELKR-KNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~----~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
|..-...++++||+||||+.++++.|.. .|..++++..++..- ..+.. --+|+||+++||++|.-+.. ..++.
T Consensus 9 k~~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d-~gI~~ 87 (767)
T KOG1224|consen 9 KKSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAAD-IGICL 87 (767)
T ss_pred HhhhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHH-HHHHH
Confidence 4444557899999999999999999965 566655554433221 22221 14999999999999954432 23333
Q ss_pred H---hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCC-CcCccccCCCCceEEeeeeeceec
Q 031223 93 E---LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 93 ~---~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~-~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+ ..+++||||||+|+|.|+.+.|+.|...+ .+.||....+++++. .-+.+++|-|+.|.+..||+..+.
T Consensus 88 rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in 160 (767)
T KOG1224|consen 88 RLLLECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIIN 160 (767)
T ss_pred HHHHhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEec
Confidence 3 25689999999999999999999999666 577998888887641 124455555679999999998763
No 57
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.79 E-value=5.9e-19 Score=133.97 Aligned_cols=137 Identities=21% Similarity=0.302 Sum_probs=101.1
Q ss_pred CCCCeEEEEEC----------CCChHHHHHHHHHHcCCEEEEEeCCCC---CHHHHhccCCCEEEeCCCCCCCCCCh-h-
Q 031223 22 NNKNPIIVIDN----------YDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSG-I- 86 (163)
Q Consensus 22 ~~~~~Ilvid~----------~~~~~~~~~~~l~~~G~~~~v~~~~~~---~~~~~~~~~~dgvvl~GG~~~~~d~~-~- 86 (163)
++..|++++.. +++|...+...|.+.|..+++++.... ..++++ +|+|+||||+..++.+.. +
T Consensus 2 ~~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI 79 (245)
T KOG3179|consen 2 MEQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWI 79 (245)
T ss_pred ccceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHH
Confidence 34567777732 455666788888889998887764322 234444 799999999988876543 2
Q ss_pred --HHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccce--eEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 87 --SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKS--SLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 87 --~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~--~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+...++++ ..++||+|||+|||++|++.||+|.|.+.+++.|-. ..++.+. ....+|..+|.++.....|+|+|
T Consensus 80 ~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~-~~~~yFG~~~~~l~IikcHqDev 158 (245)
T KOG3179|consen 80 KKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAE-KPEKYFGEIPKSLNIIKCHQDEV 158 (245)
T ss_pred HHHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecc-cchhhcccchhhhhHHhhcccce
Confidence 35556664 467999999999999999999999999888665433 2333333 25678988999999999999987
No 58
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.76 E-value=8.4e-18 Score=134.02 Aligned_cols=122 Identities=22% Similarity=0.244 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCC--------CCh--------hHHHHHHH-hCCCC
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ--------DSG--------ISLQTVLE-LGPTV 98 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~--------d~~--------~~~~~i~~-~~~~~ 98 (163)
..+.+++...|..+.++++...+.+.+. ...+|||||+||+.++. +.. ...++++. +++++
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 3477888888988888875321112221 13699999999976542 110 12566776 47899
Q ss_pred CEEEEehHHHHHHHHhCCeeeeCC----Ccccc------------cceeEEEeCCCCcCccccCC---CCceEEeeeeec
Q 031223 99 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMH------------GKSSLVYYDEKGEDGLLAGL---SKYVSISCYNIQ 159 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~----~~~e~------------G~~~~i~~~~~~~~~lf~~l---p~~~~v~~~H~~ 159 (163)
|+||||+|||+|+.++||+|.+.- ....| +..+.|.+++ +.++..+ ++.+.|++||+|
T Consensus 109 PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~---~s~l~~i~~~~~~~~Vns~H~q 185 (254)
T PRK11366 109 PIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEE---GGLLSALLPECSNFWVNSLHGQ 185 (254)
T ss_pred CEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECC---CCcHHHhcCCCceEEeehHHHH
Confidence 999999999999999999999751 00011 1235666653 2333333 257899999999
Q ss_pred eec
Q 031223 160 CFA 162 (163)
Q Consensus 160 ~v~ 162 (163)
+|.
T Consensus 186 ~V~ 188 (254)
T PRK11366 186 GAK 188 (254)
T ss_pred HHh
Confidence 874
No 59
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.75 E-value=1.8e-17 Score=143.84 Aligned_cols=128 Identities=17% Similarity=0.229 Sum_probs=96.0
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LG 95 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~ 95 (163)
...+|+|||++.++..++.++|++.|+++.+++. .+++. ++|+|||+|+ +++... ..+.+.+++ ++
T Consensus 5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~ 77 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQ 77 (538)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHH
Confidence 3468999999999999999999999999987753 34453 7999999664 443221 113455666 46
Q ss_pred CCCCEEEEehHHHHHHHHh---------C---CeeeeCCC-----cccccceeEEEeCCCCcCccccCCCCceEEeeeee
Q 031223 96 PTVPLFGVCMGLQCIGEAF---------G---GKIVRSPL-----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNI 158 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~---------G---g~v~~~~~-----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~ 158 (163)
.++|+||||+|||+|+.++ | |+|.+.+. .+++||. .+.... +++||.+++ .+.+++||+
T Consensus 78 ~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~-~V~~~~--~spL~~~l~-~~~vy~vHS 153 (538)
T PLN02617 78 NDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWN-ALQITK--DSELLDGVG-GRHVYFVHS 153 (538)
T ss_pred cCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecce-EEEecC--CChhHhcCC-CcEEEEEeE
Confidence 7899999999999999973 3 67766421 2468997 566544 689999995 568999999
Q ss_pred cee
Q 031223 159 QCF 161 (163)
Q Consensus 159 ~~v 161 (163)
|.+
T Consensus 154 y~v 156 (538)
T PLN02617 154 YRA 156 (538)
T ss_pred EEE
Confidence 986
No 60
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.72 E-value=1.1e-16 Score=124.83 Aligned_cols=123 Identities=23% Similarity=0.299 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCC----------CCh-------h-HHHHHHH-hC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ----------DSG-------I-SLQTVLE-LG 95 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~----------d~~-------~-~~~~i~~-~~ 95 (163)
...+++++.+.|..+.++++. .+.+.+.. ..+||||++||..+.. ... . ...+++. .+
T Consensus 26 ~~~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~ 104 (217)
T PF07722_consen 26 AASYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALG 104 (217)
T ss_dssp EHHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHh
Confidence 346889999999999999976 23444432 3899999999974321 010 0 1344444 37
Q ss_pred CCCCEEEEehHHHHHHHHhCCeeeeCCCc----cc------ccceeEEEeCCCCcCccccCCC-CceEEeeeeeceec
Q 031223 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLG----VM------HGKSSLVYYDEKGEDGLLAGLS-KYVSISCYNIQCFA 162 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~----~e------~G~~~~i~~~~~~~~~lf~~lp-~~~~v~~~H~~~v~ 162 (163)
+++||||||+|||+|+.++||++.+.-.. .. ....|.+.+.. ++.|.+-++ +++.|+++|+++|.
T Consensus 105 ~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~--~s~l~~~~~~~~~~vns~Hhq~v~ 180 (217)
T PF07722_consen 105 RGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP--GSLLAKILGSEEIEVNSFHHQAVK 180 (217)
T ss_dssp TT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET--TSTCCCTSHHCTEEEEEEECEEEC
T ss_pred cCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc--CchHHHHhCcCcceeecchhhhhh
Confidence 89999999999999999999999875411 00 12335565553 344443333 68999999999985
No 61
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.72 E-value=1.9e-17 Score=126.55 Aligned_cols=88 Identities=18% Similarity=0.313 Sum_probs=66.5
Q ss_pred CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCC--------------Ch---hHHHHHHH
Q 031223 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG---ISLQTVLE 93 (163)
Q Consensus 33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d--------------~~---~~~~~i~~ 93 (163)
.++++.++.++|++.|+.+.+++++. +.++++. .++|||||+||++...+ .. ...+++++
T Consensus 17 ~~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (189)
T cd01745 17 RDYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRA 95 (189)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHH
Confidence 34568889999999999999998752 3333321 37999999999864321 10 12566666
Q ss_pred h-CCCCCEEEEehHHHHHHHHhCCeeeeC
Q 031223 94 L-GPTVPLFGVCMGLQCIGEAFGGKIVRS 121 (163)
Q Consensus 94 ~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (163)
+ +.++|+||||+|||+|+.++||+|.+.
T Consensus 96 ~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~ 124 (189)
T cd01745 96 ALERGKPILGICRGMQLLNVALGGTLYQD 124 (189)
T ss_pred HHHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence 4 678999999999999999999999875
No 62
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.71 E-value=5.2e-17 Score=128.11 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=82.7
Q ss_pred ECCCChHHHHHHHHHHcCCEEEEEeCCCCC--HH---HHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEe
Q 031223 31 DNYDSFTYNLCQYMGELGYHFEVYRNDELT--VE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 104 (163)
Q Consensus 31 d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~--~~---~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC 104 (163)
|+++++...+..+..+.+..+.+...+..+ .. +. ..++||||++||++.+.... ....+++ +++++|+||||
T Consensus 14 day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~-l~~~dgivl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIC 91 (235)
T cd01746 14 DAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEA-LKGADGILVPGGFGIRGVEG-KILAIKYARENNIPFLGIC 91 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhh-hccCCEEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEE
Confidence 556666777777777777777765433211 11 11 13799999999998766543 3455665 47889999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcc--c--ccc------------------------eeEEEeCCCCcCccccCCCC-ceEEee
Q 031223 105 MGLQCIGEAFGGKIVRSPLGV--M--HGK------------------------SSLVYYDEKGEDGLLAGLSK-YVSISC 155 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~--e--~G~------------------------~~~i~~~~~~~~~lf~~lp~-~~~v~~ 155 (163)
+|||+|+.++||++.+.+... + .+. .|.+.+.+ ++.|.+-++. ...+++
T Consensus 92 lG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~--~s~l~~~~g~~~~~~n~ 169 (235)
T cd01746 92 LGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKP--GTLAHKYYGKDEVEERH 169 (235)
T ss_pred hHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECC--CChHHHHhCCCEEEEec
Confidence 999999999999987654210 0 111 13344432 3444444443 468999
Q ss_pred eeecee
Q 031223 156 YNIQCF 161 (163)
Q Consensus 156 ~H~~~v 161 (163)
+|+++|
T Consensus 170 ~H~~~v 175 (235)
T cd01746 170 RHRYEV 175 (235)
T ss_pred Cccccc
Confidence 999987
No 63
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.70 E-value=9.2e-17 Score=129.28 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCC---hhHHHHHHHh----CC--CCCEEEEeh
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS---GISLQTVLEL----GP--TVPLFGVCM 105 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~---~~~~~~i~~~----~~--~~PvLGIC~ 105 (163)
...+.+++++.|+.+..+..+ .+.+.++. ..+||||++||+.++... .....+++.+ ++ .+|+||||+
T Consensus 22 ~~~Yv~~l~~aG~~vvpi~~~-~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 22 AASYVKFLESAGARVVPIWIN-ESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHHHCCCeEEEEEeC-CcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 445889999999998877765 22334332 379999999998766422 1223333332 22 389999999
Q ss_pred HHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCC--------ceEEeeeeeceec
Q 031223 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSK--------YVSISCYNIQCFA 162 (163)
Q Consensus 106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~--------~~~v~~~H~~~v~ 162 (163)
|+|+|+.++||++........+|...++.+++ ..+++||+++|. ...++++|+++|+
T Consensus 101 G~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~ 166 (273)
T cd01747 101 GFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGIS 166 (273)
T ss_pred HHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccC
Confidence 99999999999855422134567766887764 346889999875 4578999999884
No 64
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=123.85 Aligned_cols=121 Identities=18% Similarity=0.277 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCEEEEEeCC--CCCHHHHhccCCCEEEeCCCCCCCC---------------CC--h-hHHHHHHH-hCC
Q 031223 38 YNLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPGAPQ---------------DS--G-ISLQTVLE-LGP 96 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~--~~~~~~~~~~~~dgvvl~GG~~~~~---------------d~--~-~~~~~i~~-~~~ 96 (163)
..+.++....|.-+.++|.- ..+...+. ...||||++|| .++. +. + ....+|++ +++
T Consensus 29 ~~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~ 106 (243)
T COG2071 29 YDYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER 106 (243)
T ss_pred HHHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence 34667777788888888832 11222222 36999999999 4321 00 1 13677777 589
Q ss_pred CCCEEEEehHHHHHHHHhCCeeeeCCC-----------cccccceeEEEeCCCCcCccccCCCCc-eEEeeeeeceec
Q 031223 97 TVPLFGVCMGLQCIGEAFGGKIVRSPL-----------GVMHGKSSLVYYDEKGEDGLLAGLSKY-VSISCYNIQCFA 162 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~Gg~v~~~~~-----------~~e~G~~~~i~~~~~~~~~lf~~lp~~-~~v~~~H~~~v~ 162 (163)
++||||||+|+|+|+.||||++++.-. .+..-..|.|.+.+ ++-|.+-+++. +.|+++|+|++.
T Consensus 107 ~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~--~s~La~i~g~~~~~VNS~HhQaIk 182 (243)
T COG2071 107 GIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEP--GSKLAKILGESEFMVNSFHHQAIK 182 (243)
T ss_pred CCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecC--CccHHHhcCccceeecchHHHHHH
Confidence 999999999999999999999987421 00111145666654 56666666655 999999999863
No 65
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.69 E-value=1.8e-16 Score=141.33 Aligned_cols=106 Identities=28% Similarity=0.476 Sum_probs=86.7
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~Pv 100 (163)
+...+|+.+|+ +...+.+|+|...|+++.++|++. ++ ...+||||+++.||++|.-.+.+.+-+++ +..++|+
T Consensus 170 Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~~-~i---~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~Pv 243 (1435)
T KOG0370|consen 170 GKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWDY-PI---AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPV 243 (1435)
T ss_pred CcccEEEEccc--CchHHHHHHHHHhCceEEEecCCc-cc---cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCe
Confidence 34578999998 467889999999999999999862 22 23389999999999999887777777777 4556999
Q ss_pred EEEehHHHHHHHHhCCeeeeCCCcccccceeEEE
Q 031223 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVY 134 (163)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~ 134 (163)
+|||+|||+||.|.|++..+++++ .+|.+.+.+
T Consensus 244 fGIClGHQllA~AaGakT~KmKyG-NRGhNiP~~ 276 (1435)
T KOG0370|consen 244 FGICLGHQLLALAAGAKTYKMKYG-NRGHNIPCT 276 (1435)
T ss_pred EEEehhhHHHHHhhCCceEEeecc-ccCCCccce
Confidence 999999999999999999999864 456655544
No 66
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.68 E-value=3e-16 Score=134.94 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=84.5
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEEEEECCCChH---HHHHHHHHHcCC----EEEEEeCCCCCHHHHh------ccCCCE
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGY----HFEVYRNDELTVEELK------RKNPRG 71 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~---~~~~~~l~~~G~----~~~v~~~~~~~~~~~~------~~~~dg 71 (163)
+.++..|+.++++.+++....+|+++--|.... .++.++|...|+ .+.+...+ .+++. ..++||
T Consensus 270 ~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dG 346 (525)
T TIGR00337 270 EADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDG 346 (525)
T ss_pred CCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCE
Confidence 356889999999999998889999995553322 368888888776 34433322 22221 136999
Q ss_pred EEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeCC
Q 031223 72 VLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSP 122 (163)
Q Consensus 72 vvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (163)
||++||++++.+.... +.++. .++++|+||||+|||+|+.++|+++....
T Consensus 347 IiLpGG~G~~~~~g~i-~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~ 397 (525)
T TIGR00337 347 ILVPGGFGERGVEGKI-LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLK 397 (525)
T ss_pred EEeCCCCCChhhcChH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCC
Confidence 9999999887665543 45555 36889999999999999999999887754
No 67
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.67 E-value=1.8e-15 Score=118.76 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=89.3
Q ss_pred CeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC--------ChhHHHHHHHh-
Q 031223 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL- 94 (163)
Q Consensus 25 ~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d--------~~~~~~~i~~~- 94 (163)
|||+||++.+++ ...+.++|++.|+++++++.... .++ ++|+|||+||+....+ .....++++++
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~ 75 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA 75 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence 479999998775 67789999999999988875421 233 7999999999642111 12245667774
Q ss_pred CCCCCEEEEehHHHHHHHH--hCCeeeeCCCcccc--cceeEEEeCCCCcCccccCCCCceEEee--eeec
Q 031223 95 GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMH--GKSSLVYYDEKGEDGLLAGLSKYVSISC--YNIQ 159 (163)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~--G~~~~i~~~~~~~~~lf~~lp~~~~v~~--~H~~ 159 (163)
++++|++|||.|+|+|+.+ ++|++.+... .++ +|. .+++.. .++++|++++....++. .|.+
T Consensus 76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~-~~~~~~~~-~~~v~~-~~~~~~~~~~~g~~~~~pi~H~e 143 (227)
T TIGR01737 76 EKGVPVLGICNGFQILVEAGLLPGALLPNDS-LRFICRWV-YLRVEN-ADTIFTKNYKKGEVIRIPIAHGE 143 (227)
T ss_pred HcCCEEEEECHHHHHHHHcCCCCCceeecCC-CceEEEeE-EEEECC-CCChhhccCCCCCEEEEEeEcCC
Confidence 7889999999999999996 8999888763 344 444 344432 25788888875333332 4544
No 68
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.67 E-value=7e-16 Score=118.13 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=82.3
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHHhCCCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLELGPTVP 99 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~~~~~~P 99 (163)
||+|||++.++..++.++|++.|+++.+++. .+++. ++|+||++|+ +++.+.. .+.+.|++ ..++|
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~P 72 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKK 72 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCe
Confidence 3899999999999999999999999988863 35664 7999988665 5533221 13555665 56899
Q ss_pred EEEEehHHHHHHHHh--C---------CeeeeCCC---cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 100 LFGVCMGLQCIGEAF--G---------GKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 100 vLGIC~G~QlLa~a~--G---------g~v~~~~~---~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+||||+|||+|++.. | ++|.+.+. -|..||+. +.. +.++|+ .++++.|++.+
T Consensus 73 vlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~-~~~----~~~l~~-----~~~yFVhSy~v 138 (192)
T PRK13142 73 MIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNN-LVS----KHPMLN-----QDVYFVHSYQA 138 (192)
T ss_pred EEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccc-cCC----CCcccc-----cEEEEECCCeE
Confidence 999999999999975 2 34444421 13446652 221 244553 46899999877
No 69
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.67 E-value=2.4e-16 Score=135.57 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=81.0
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEEEEECCCChH---HHHHHHHHH----cCCEEEEEeCCCCCHHH--H--hccCCCEEE
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGE----LGYHFEVYRNDELTVEE--L--KRKNPRGVL 73 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~---~~~~~~l~~----~G~~~~v~~~~~~~~~~--~--~~~~~dgvv 73 (163)
+.++..|+.++++.+++....+|++|--|.... .++.++|+. .+..+++...+...+++ . ...++||||
T Consensus 269 ~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGII 348 (533)
T PRK05380 269 EPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGIL 348 (533)
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEE
Confidence 467899999999999998889999995443221 134555544 45566665544222111 1 113799999
Q ss_pred eCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeee
Q 031223 74 ISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIV 119 (163)
Q Consensus 74 l~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (163)
++||++.....+. ..+++. .++++|+||||+|||+|+.++|+++.
T Consensus 349 lpGGfG~~~~~g~-i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~ 394 (533)
T PRK05380 349 VPGGFGERGIEGK-ILAIRYARENNIPFLGICLGMQLAVIEFARNVL 394 (533)
T ss_pred ecCCCCccccccH-HHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence 9999887655543 455666 47889999999999999999999984
No 70
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.66 E-value=6.9e-16 Score=117.37 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=84.0
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHH-hCCCCCEE
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLF 101 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~-~~~~~PvL 101 (163)
|+++++ .+...+ ++|++.|+++..+++. +++. ++|+||++||+.+..+. ....++|++ +++++|+|
T Consensus 3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl 73 (183)
T cd01749 3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF 73 (183)
T ss_pred EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence 566765 333333 8999999999888652 3443 79999999998654432 124566777 47899999
Q ss_pred EEehHHHHHHHHhCC------------eeeeCCCcccccceeEEEeCCCCcCccccCC-CCceEEeeeeeceec
Q 031223 102 GVCMGLQCIGEAFGG------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL-SKYVSISCYNIQCFA 162 (163)
Q Consensus 102 GIC~G~QlLa~a~Gg------------~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~l-p~~~~v~~~H~~~v~ 162 (163)
|||+|+|+|+.++|+ +|.+.+.+++.|+. ...+ .+.++ ++.+.++.+|.+.|.
T Consensus 74 GiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~-~~~l-------~~~~~~~~~~~~~~~h~~~v~ 139 (183)
T cd01749 74 GTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSF-EADL-------DIPGLGLGPFPAVFIRAPVIE 139 (183)
T ss_pred EECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceE-EEcC-------CCCcCCCCccEEEEEECcEEE
Confidence 999999999999998 67665545555543 2222 23444 377999999999873
No 71
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.63 E-value=5.9e-15 Score=112.47 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=86.8
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC----ChhHHHHHHHh-CCCCCEE
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d----~~~~~~~i~~~-~~~~PvL 101 (163)
|.|+-..+.+. ...++|+++|+++.+++. .++++ ++|++||+||+++..+ ...+.+.|+++ ++++|++
T Consensus 2 igvl~~qg~~~-e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pil 74 (184)
T TIGR03800 2 IGVLALQGAVR-EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVF 74 (184)
T ss_pred EEEEEccCCHH-HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEE
Confidence 44454433343 466999999999988864 34454 7999999999765421 12345667774 7889999
Q ss_pred EEehHHHHHHHHh-----------CCeeeeCCCcccccceeEEEeCC-C-CcC---------ccccCCCCceEEeeeeec
Q 031223 102 GVCMGLQCIGEAF-----------GGKIVRSPLGVMHGKSSLVYYDE-K-GED---------GLLAGLSKYVSISCYNIQ 159 (163)
Q Consensus 102 GIC~G~QlLa~a~-----------Gg~v~~~~~~~e~G~~~~i~~~~-~-~~~---------~lf~~lp~~~~v~~~H~~ 159 (163)
|||+|+|+|+.++ ++++.+...+++.|.. ...++. + ..+ +....+|+.+.+..+|.+
T Consensus 75 GIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~-~~~l~~~~~~~~~~~~~~~h~~~v~~lp~~~~vla~~~~ 153 (184)
T TIGR03800 75 GTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSF-EAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAKVGN 153 (184)
T ss_pred EECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccE-EEEeecccCCCCcceEEEEcCCCcccCCCCeEEEEEeCC
Confidence 9999999999997 2677776655566665 333332 1 122 445678888999888876
Q ss_pred ee
Q 031223 160 CF 161 (163)
Q Consensus 160 ~v 161 (163)
++
T Consensus 154 ~~ 155 (184)
T TIGR03800 154 RI 155 (184)
T ss_pred ee
Confidence 54
No 72
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.60 E-value=2.2e-14 Score=116.61 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=88.4
Q ss_pred CeEEEEECCCC---hHHHHHHHHHHcCCE--EEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCC--CC
Q 031223 25 NPIIVIDNYDS---FTYNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGA--PQ 82 (163)
Q Consensus 25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~--~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~--~~ 82 (163)
.+|+|++.-.. ....+.|.|...... ++.+.... .++++++..+|||+||+|+|-+ ++
T Consensus 36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f 115 (302)
T PRK05368 36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF 115 (302)
T ss_pred ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence 78999987543 233466666543333 44443221 2345565568999999999976 44
Q ss_pred CChh----HHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223 83 DSGI----SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157 (163)
Q Consensus 83 d~~~----~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H 157 (163)
+... +.+++..+ +..+|+||||+|+|+++.++||.......+.+.|.. ....... .+||++|+++.|.+.++|
T Consensus 116 edv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~-~~~~~~~-~~pL~~g~~d~F~~phSr 193 (302)
T PRK05368 116 EDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVF-EHRVLDP-HHPLLRGFDDSFLVPHSR 193 (302)
T ss_pred CCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEE-EEEEcCC-CChhhcCCCCccccceee
Confidence 4322 22333222 457999999999999999999962222212456754 2233332 689999999999999999
Q ss_pred ecee
Q 031223 158 IQCF 161 (163)
Q Consensus 158 ~~~v 161 (163)
.+.|
T Consensus 194 ~~~V 197 (302)
T PRK05368 194 YTEV 197 (302)
T ss_pred hhhc
Confidence 8876
No 73
>PLN02327 CTP synthase
Probab=99.57 E-value=8.5e-15 Score=126.41 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=80.2
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEEEEECC----CChHHHHHHHHH----HcCCEEEEEeCCCCCHHH------------H
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMG----ELGYHFEVYRNDELTVEE------------L 64 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~----~~~~~~~~~~l~----~~G~~~~v~~~~~~~~~~------------~ 64 (163)
+.++..|+.++++.+++....+|++|--| |+|. ++.++|+ +.+..+++...+...+++ +
T Consensus 278 ~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~ 356 (557)
T PLN02327 278 EPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAA 356 (557)
T ss_pred CCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhh
Confidence 35689999999999999888999999443 3332 2344443 456666665433211110 0
Q ss_pred --hccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeC
Q 031223 65 --KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRS 121 (163)
Q Consensus 65 --~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~ 121 (163)
...++|||+++||++++...+.. ..++. .++++|+||||+|||+++.+|+.+|...
T Consensus 357 ~~~L~~~DGIvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClGmQl~viefaRnvlG~ 415 (557)
T PLN02327 357 WKLLKGADGILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLGMQIAVIEFARSVLGL 415 (557)
T ss_pred HHhhccCCEEEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence 01379999999999876666553 34454 3689999999999999999999877654
No 74
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.54 E-value=1e-13 Score=109.62 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=87.2
Q ss_pred EEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC--------hh-HHHHHHHh-C
Q 031223 27 IIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--------GI-SLQTVLEL-G 95 (163)
Q Consensus 27 Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~--------~~-~~~~i~~~-~ 95 (163)
|+||.+.++ ....+.++|++.|+++++++..+....+....+||+|||+||+...... .. +.++++++ +
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~ 80 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE 80 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence 456666555 5778999999999999988764321111112379999999997422111 11 55677774 7
Q ss_pred CCCCEEEEehHHHHHHHH--hCCeeeeCCCcccccc-----eeEEEeCCCCcCccccC--CCCceEEeeeeec
Q 031223 96 PTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGK-----SSLVYYDEKGEDGLLAG--LSKYVSISCYNIQ 159 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~G~-----~~~i~~~~~~~~~lf~~--lp~~~~v~~~H~~ 159 (163)
+++|+||||.|+|+|+.+ ++|++.+.+. .+... ...+++.. .++++++. .+..+.++..|++
T Consensus 81 ~g~pvlGIC~G~QlL~~~gll~g~~~~~~~-~~~~~~~~~~~v~~~v~~-~~si~t~~~~~g~~l~~~vaHge 151 (238)
T cd01740 81 RGGLVLGICNGFQILVELGLLPGALIRNKG-LKFICRWQNRFVTLRVEN-NDSPFTKGYMEGEVLRIPVAHGE 151 (238)
T ss_pred CCCeEEEECcHHHHHHHcCCCccccccCCC-CceeccccCceEEEEEcC-CCCceecCCCCCCEEEEEeECCc
Confidence 899999999999999998 8898876552 22221 11233322 25677765 4567899999986
No 75
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.53 E-value=3.2e-13 Score=105.55 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=89.8
Q ss_pred CeEEEEECCCCh-HHHHHHHHH-HcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC--------CChhHHHHHHHh
Q 031223 25 NPIIVIDNYDSF-TYNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL 94 (163)
Q Consensus 25 ~~Ilvid~~~~~-~~~~~~~l~-~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~--------d~~~~~~~i~~~ 94 (163)
|||+||.+.+++ ...+.++|+ ..|+++..+...+ .+++ ++|+|||+||+..-. ....+.++++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~ 75 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF 75 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence 479999998887 566899998 8999888776542 2333 799999999964211 112356777774
Q ss_pred -CCCCCEEEEehHHHHHHHH--hCCeeeeCCCcccc--cceeEEEeCCCCcCccccCCCC--ceEEeeeeec
Q 031223 95 -GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMH--GKSSLVYYDEKGEDGLLAGLSK--YVSISCYNIQ 159 (163)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~--G~~~~i~~~~~~~~~lf~~lp~--~~~v~~~H~~ 159 (163)
++++|++|||.|+|+|+.+ ++|++.+... .++ +|. .+++.. .++++++++.. .+.+.-.|++
T Consensus 76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~-~~~~~~~v-~v~i~~-~~~~~~~~~~~g~~~~~~~aH~~ 144 (219)
T PRK03619 76 AEKGKPVLGICNGFQILTEAGLLPGALTRNAS-LKFICRDV-HLRVEN-NDTPFTSGYEKGEVIRIPIAHGE 144 (219)
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCC-CcEEEEEE-EEEECC-CCChhhcCCCCCCEEEEEEEcCc
Confidence 7899999999999999998 8999988763 344 443 455543 25788888743 3444445654
No 76
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.46 E-value=2.1e-12 Score=103.37 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=64.2
Q ss_pred CCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC--CCh-----h----HHH
Q 031223 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--DSG-----I----SLQ 89 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~--d~~-----~----~~~ 89 (163)
++++||+||.+.+++ +....++|++.|+++++++..+.........+||+|||+||.+... ... . +.+
T Consensus 1 ~~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~ 80 (261)
T PRK01175 1 MESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRK 80 (261)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHH
Confidence 356789999986664 7778899999999999887532111111123799999999953211 111 1 235
Q ss_pred HHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 90 TVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 90 ~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
.|++ +++++|+||||+|+|+|+.+
T Consensus 81 ~Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 81 DIEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHHCCCeEEEECHHHHHHHHC
Confidence 5666 47899999999999999985
No 77
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.44 E-value=2.2e-12 Score=100.04 Aligned_cols=130 Identities=18% Similarity=0.310 Sum_probs=85.0
Q ss_pred CCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---h------hHHHHHHH
Q 031223 24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G------ISLQTVLE 93 (163)
Q Consensus 24 ~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~------~~~~~i~~ 93 (163)
.+||+||.+-+++ ....+.+++.+|.+++.+...+.... .++|+||++||. |..|. + .+++.+++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~----~~~d~vv~pGGF-SyGDyLr~Gaiaa~~~v~~~v~~ 76 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGF-SYGDYLRAGAIAAIAPVMDEVRE 76 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccC----CCccEEEEcCCC-CcccccCcchHHhhHHHHHHHHH
Confidence 5789999987775 55688999999999998876422111 169999999994 44443 2 24566666
Q ss_pred -hCCCCCEEEEehHHHHHHHH--hCCeeeeCCCcccccceeEEEeCCCCcCccccCCC--CceEEeeeeec
Q 031223 94 -LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--KYVSISCYNIQ 159 (163)
Q Consensus 94 -~~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp--~~~~v~~~H~~ 159 (163)
+++++|+||||.|+|+|.++ +-|...+............+++.. .+++++++.. +.+.+--.|.+
T Consensus 77 ~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~-~~t~ft~~~~~g~~i~ipVAHgE 146 (231)
T COG0047 77 FAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVEN-NNTPFTSGYEGGEVIPIPVAHGE 146 (231)
T ss_pred HHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEec-CCCHHHHhcCCCceEEEEEeecc
Confidence 47899999999999999975 557777665322223322444443 1455555553 34555555543
No 78
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.43 E-value=4.7e-13 Score=113.30 Aligned_cols=109 Identities=19% Similarity=0.332 Sum_probs=76.9
Q ss_pred ccCCChhhHhhHHhhhcCCCCCeEEEEECC----CChHHHHHHHHHHc----CCEEEEEeCCCCCH-----HHHhccCCC
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGEL----GYHFEVYRNDELTV-----EELKRKNPR 70 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~----~~~~~~~~~~l~~~----G~~~~v~~~~~~~~-----~~~~~~~~d 70 (163)
-+.+++.|+.++++++++....+|+++--| |+|. ++.++|+.. +..+.+...+..++ +.+.. .+|
T Consensus 268 ~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~d 345 (533)
T COG0504 268 PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVD 345 (533)
T ss_pred CCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCC
Confidence 357899999999999998888999999544 3333 355566654 45555554432221 12221 299
Q ss_pred EEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223 71 GVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 71 gvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~G 115 (163)
||+++||.+....++++. .++. .++++|+||||+|||+....+-
T Consensus 346 gIlVPGGFG~RG~eGkI~-Ai~yAREn~iP~lGIClGmQ~aviE~A 390 (533)
T COG0504 346 GILVPGGFGYRGVEGKIA-AIRYARENNIPFLGICLGMQLAVIEFA 390 (533)
T ss_pred EEEeCCCCCcCchHHHHH-HHHHHHhcCCCEEEEchhHHHHHHHHH
Confidence 999999998777777754 3444 4799999999999999987654
No 79
>PRK06186 hypothetical protein; Validated
Probab=99.41 E-value=5.1e-13 Score=104.68 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=58.0
Q ss_pred CeEEEEECC----CChHHHHHHHHHH----cCCEEEEEeCCCCCHHHH-hccCCCEEEeCCCCCCCCCChhHHHHHHH-h
Q 031223 25 NPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLE-L 94 (163)
Q Consensus 25 ~~Ilvid~~----~~~~~~~~~~l~~----~G~~~~v~~~~~~~~~~~-~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~ 94 (163)
.+|++|--| |+|. ++.++|+. .+..+++...+...+++- ...++|||+++||.+....++++ .+++. .
T Consensus 2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~Gki-~ai~~Ar 79 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDDGAL-TAIRFAR 79 (229)
T ss_pred cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHhHHH-HHHHHHH
Confidence 478888443 3333 34444543 566666655432222110 11379999999998876666665 44555 4
Q ss_pred CCCCCEEEEehHHHHHHHHhCCee
Q 031223 95 GPTVPLFGVCMGLQCIGEAFGGKI 118 (163)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v 118 (163)
++++|+||||+|||++...++..+
T Consensus 80 e~~iP~LGIClGmQ~avIe~arnv 103 (229)
T PRK06186 80 ENGIPFLGTCGGFQHALLEYARNV 103 (229)
T ss_pred HcCCCeEeechhhHHHHHHHHhhh
Confidence 789999999999998766655444
No 80
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.35 E-value=7.4e-12 Score=94.60 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=67.1
Q ss_pred HHhccCCCEEEeCCCCCCCCCCh------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCee-eeCCCcccccceeEEE
Q 031223 63 ELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSLVY 134 (163)
Q Consensus 63 ~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v-~~~~~~~e~G~~~~i~ 134 (163)
+++..+|||+||+|.|-.-.+.+ ++.+++.-. ++..|+||||.|+|....++||.. .+.+.+ ..|.. ...
T Consensus 57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K-~~Gvf-~~~ 134 (175)
T cd03131 57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEK-IFGVF-PHT 134 (175)
T ss_pred HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCc-eEEEE-Eee
Confidence 35556899999999987433221 222222222 467999999999999999999986 555533 34543 222
Q ss_pred eCCCCcCccccCCCCceEEeeeeeceec
Q 031223 135 YDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 135 ~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+.. .+||++|+++.|.+.++|...|+
T Consensus 135 ~~~--~hpL~~g~~d~F~~PhSR~~~v~ 160 (175)
T cd03131 135 ILE--PHPLLRGLDDGFDVPHSRYAEVD 160 (175)
T ss_pred ecC--CCccccCCCCceeecCcccccCC
Confidence 222 68999999999999999988764
No 81
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.32 E-value=9.5e-12 Score=94.18 Aligned_cols=94 Identities=13% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC--C--CChhHHHHHHHhCCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--Q--DSGISLQTVLELGPTVP 99 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~--~--d~~~~~~~i~~~~~~~P 99 (163)
.++|.|+...+.+.. -.++|+..|+++.+++ +.+++. ++|+|||+||.+.. . ....+.+.|+++.+++|
T Consensus 2 ~~~igVLalqG~~~E-h~~al~~lG~~v~~v~----~~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kp 74 (179)
T PRK13526 2 TQKVGVLAIQGGYQK-HADMFKSLGVEVKLVK----FNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKP 74 (179)
T ss_pred CcEEEEEECCccHHH-HHHHHHHcCCcEEEEC----CHHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCc
Confidence 378999988777655 5688999999887775 245654 79999999985542 1 11235677777544789
Q ss_pred EEEEehHHHHHHHH---hC---CeeeeCCCc
Q 031223 100 LFGVCMGLQCIGEA---FG---GKIVRSPLG 124 (163)
Q Consensus 100 vLGIC~G~QlLa~a---~G---g~v~~~~~~ 124 (163)
++|||.|+|+|+.. +| ++|.+..++
T Consensus 75 ilGICaG~qlL~~~s~~Lg~idg~V~Rn~~G 105 (179)
T PRK13526 75 VFGTCAGSIILSKGEGYLNLLDLEVQRNAYG 105 (179)
T ss_pred EEEEcHHHHHHHccCCCCCCccEEEEEcCCC
Confidence 99999999999983 44 688877643
No 82
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.25 E-value=2.4e-11 Score=96.44 Aligned_cols=83 Identities=23% Similarity=0.326 Sum_probs=61.9
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC----ChhHHHHHHHh-CCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVP 99 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d----~~~~~~~i~~~-~~~~P 99 (163)
|+|.|+.+.+.+... .++|+++|+++.+++. .+++. ++|+|||+||...... ...+.+.|+++ ++++|
T Consensus 2 m~igVLa~qG~~~e~-~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~P 74 (248)
T PLN02832 2 MAIGVLALQGSFNEH-IAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKP 74 (248)
T ss_pred cEEEEEeCCCchHHH-HHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCC
Confidence 579999998776654 6889999999887753 35665 7999999997543211 11245566664 68899
Q ss_pred EEEEehHHHHHHHHh
Q 031223 100 LFGVCMGLQCIGEAF 114 (163)
Q Consensus 100 vLGIC~G~QlLa~a~ 114 (163)
+||||.|||+|+...
T Consensus 75 vLGiC~GmqlLa~~~ 89 (248)
T PLN02832 75 VWGTCAGLIFLAERA 89 (248)
T ss_pred EEEEChhHHHHHHHh
Confidence 999999999999864
No 83
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.15 E-value=1.2e-10 Score=89.44 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=61.6
Q ss_pred EEEEECC-CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-----hhHHHHHHH-hCCCCC
Q 031223 27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVP 99 (163)
Q Consensus 27 Ilvid~~-~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-----~~~~~~i~~-~~~~~P 99 (163)
|+|++.. .++...+.+++++.|++++++++.. ++ .++|+|||+||.....+. ..+.+.|++ .++++|
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p 74 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GL--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CC--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence 4677764 4578889999999999999998642 23 378999998886322111 124566666 478999
Q ss_pred EEEEehHHHHHHHHhC
Q 031223 100 LFGVCMGLQCIGEAFG 115 (163)
Q Consensus 100 vLGIC~G~QlLa~a~G 115 (163)
+||||.|+|+|++.+.
T Consensus 75 vlgiC~G~qlL~~~~~ 90 (194)
T cd01750 75 VLGICGGYQMLGKYIV 90 (194)
T ss_pred EEEECHHHHHhhhhcc
Confidence 9999999999999873
No 84
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.11 E-value=2e-10 Score=96.45 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=72.2
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECCCChHHH---HHHHHHH----cCCEEEEEeCCCCCHHH---------Hh----
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYN---LCQYMGE----LGYHFEVYRNDELTVEE---------LK---- 65 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~---~~~~l~~----~G~~~~v~~~~~~~~~~---------~~---- 65 (163)
..+.+|++..++.++.....+|+++--|-....+ +..+|.. .+...++...+..+++. ..
T Consensus 280 ~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~ 359 (585)
T KOG2387|consen 280 PMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQ 359 (585)
T ss_pred hhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHH
Confidence 5678999999999999999999999555443332 3344433 23333333222111111 10
Q ss_pred -ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhC
Q 031223 66 -RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 66 -~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~G 115 (163)
....|||+++||.++..-++.+.++-..-++++|.||||+|||+.+.-|.
T Consensus 360 ~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 360 KLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFA 410 (585)
T ss_pred HhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHH
Confidence 12589999999998777666654332233689999999999999887654
No 85
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.09 E-value=1e-09 Score=89.88 Aligned_cols=124 Identities=13% Similarity=0.211 Sum_probs=84.9
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV 98 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~~ 98 (163)
-+.+||.+.++.+++..+|+.+|+++..+.. +.++. +.|.+|++ |.++..-. .-+.+.+++ +++++
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfP-GVGnfg~~~D~L~~~Gf~eplr~Yiesgk 75 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIFP-GVGNFGPAMDVLNRTGFAEPLRKYIESGK 75 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEeec-CcccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence 3778999999999999999999999887753 34565 68889884 44543211 123556666 58999
Q ss_pred CEEEEehHHHHHHHH------------hCCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeece
Q 031223 99 PLFGVCMGLQCIGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQC 160 (163)
Q Consensus 99 PvLGIC~G~QlLa~a------------~Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~ 160 (163)
|++|||.|.|.|... +-|.|.+... -|++||+. -.+. .++.+|...|.+ .+|+.|++-
T Consensus 76 PfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNs-c~v~--sd~effg~~p~~-~~YFVHSyl 149 (541)
T KOG0623|consen 76 PFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNS-CQVG--SDSEFFGDVPNR-HVYFVHSYL 149 (541)
T ss_pred CeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccc-cccC--CcccccccCCCc-eEEEEeeec
Confidence 999999999999753 1234444321 25778873 2222 145667666654 789999984
No 86
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.02 E-value=2.7e-09 Score=82.17 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC--C---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--D---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~--d---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
-.++|++.|+++.++++. ..+++. ++|+|||+||..... . ...+.+.|+++ ++++|++|||.|+|+|++.
T Consensus 16 ~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 16 NLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence 456788999999888642 112333 499999999843311 1 11245667764 6889999999999999997
Q ss_pred h
Q 031223 114 F 114 (163)
Q Consensus 114 ~ 114 (163)
+
T Consensus 92 ~ 92 (198)
T cd03130 92 L 92 (198)
T ss_pred h
Confidence 5
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.96 E-value=1.8e-09 Score=86.43 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=58.8
Q ss_pred CCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hh-----------HH
Q 031223 24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI-----------SL 88 (163)
Q Consensus 24 ~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~-----------~~ 88 (163)
++||+|+.+.++ .+.....+++..|++++.+...+....+....++|+|||+||.+ ..|. +. +.
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS-~gD~l~sg~~~a~~~~~~~~~~ 79 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFS-YGDYLRSGAIAAARLLFNSPLM 79 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-G-GGGTTSTTHHHHHHHCCSCCCH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccC-ccccchHHHHHHHHhhccHHHH
Confidence 368999988777 47789999999999999887542100111224899999999954 2222 11 25
Q ss_pred HHHHHh-CC-CCCEEEEehHHHHHHHH--hCC
Q 031223 89 QTVLEL-GP-TVPLFGVCMGLQCIGEA--FGG 116 (163)
Q Consensus 89 ~~i~~~-~~-~~PvLGIC~G~QlLa~a--~Gg 116 (163)
+.|+++ ++ ++|+||||.|+|+|.+. +.+
T Consensus 80 ~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~ 111 (259)
T PF13507_consen 80 DAIREFLERPGGFVLGICNGFQILVELGLLPG 111 (259)
T ss_dssp HHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred HHHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence 566664 45 99999999999999886 555
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.84 E-value=8.2e-08 Score=90.25 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=85.0
Q ss_pred CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCC-------CHHHHh--ccCCCEEEeCCCCCCCCCCh-------
Q 031223 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL-------TVEELK--RKNPRGVLISPGPGAPQDSG------- 85 (163)
Q Consensus 23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~-------~~~~~~--~~~~dgvvl~GG~~~~~d~~------- 85 (163)
.++||+|+.+.+++ .....+++++.|++++.+...+. +.+.+. ..++++|+++||.+ ..|..
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFS-yGD~l~~~~~~~ 1054 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFS-AGDEPDGSAKFI 1054 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccC-cccccchhHHHH
Confidence 46899999987774 66789999999998887764321 112221 13899999999954 33321
Q ss_pred -------hHHHHHHH-hCCCCCEEEEehHHHHHHHH--h-CCe----------eeeCCCc-ccccceeEEEeCCCCcCcc
Q 031223 86 -------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA--F-GGK----------IVRSPLG-VMHGKSSLVYYDEKGEDGL 143 (163)
Q Consensus 86 -------~~~~~i~~-~~~~~PvLGIC~G~QlLa~a--~-Gg~----------v~~~~~~-~e~G~~~~i~~~~~~~~~l 143 (163)
.+.+.+.+ ++++.++||||.|+|+|... + +++ +.+...+ .+-.|. .+++.. ..+++
T Consensus 1055 aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v-~~~v~~-~~s~~ 1132 (1239)
T TIGR01857 1055 AAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIV-RTRIAS-TNSPW 1132 (1239)
T ss_pred HHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeee-EEEECC-CCChh
Confidence 13445555 37899999999999999885 1 232 2222211 121232 344443 36788
Q ss_pred ccCCC--CceEEeeeeec
Q 031223 144 LAGLS--KYVSISCYNIQ 159 (163)
Q Consensus 144 f~~lp--~~~~v~~~H~~ 159 (163)
++++. +.+.+.-.|++
T Consensus 1133 ~~~~~~g~~~~ipvaHgE 1150 (1239)
T TIGR01857 1133 LSGVSVGDIHAIPVSHGE 1150 (1239)
T ss_pred HhcCCCCCEEEEEeEcCC
Confidence 87764 45777777765
No 89
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.83 E-value=4.3e-08 Score=76.57 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHcCCEEEEEeCCC--------------------------------CCHHHHhccCCCEEEeCCCCCCC---CC-
Q 031223 40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD- 83 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~--------------------------------~~~~~~~~~~~dgvvl~GG~~~~---~d- 83 (163)
..+.|++.|++++++.+.. .+++++...+||+|+|+||.+.. .|
T Consensus 25 P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~ 104 (217)
T PRK11780 25 TLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNF 104 (217)
T ss_pred HHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhh
Confidence 6688999999999876431 11223334579999999996532 11
Q ss_pred ---------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223 84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 84 ---------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G 115 (163)
...+.++++++ ++++|+.+||.|.|+|+.++|
T Consensus 105 ~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 105 AVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG 146 (217)
T ss_pred cccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence 23467888885 789999999999999999873
No 90
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.76 E-value=1.7e-07 Score=88.67 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC--CCCCCh-----------hHH
Q 031223 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----------ISL 88 (163)
Q Consensus 23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~--~~~d~~-----------~~~ 88 (163)
.++||+|+.+.+++ ......+++..|++++.+...+.........++++|+++||.+ +..+.+ .+.
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~ 1115 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLL 1115 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHH
Confidence 46899999887774 6678999999999887776432111111123899999999963 222222 134
Q ss_pred HHHHHh--CCCCCEEEEehHHHHHHHH
Q 031223 89 QTVLEL--GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 89 ~~i~~~--~~~~PvLGIC~G~QlLa~a 113 (163)
+.++++ +++.++||||.|+|+|+..
T Consensus 1116 ~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1116 QQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 555553 4689999999999999885
No 91
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.74 E-value=1.5e-07 Score=89.39 Aligned_cols=135 Identities=15% Similarity=0.190 Sum_probs=85.3
Q ss_pred CCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hh-----------
Q 031223 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI----------- 86 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~----------- 86 (163)
.+++||+|+.+.+++ ......+++..|+++..+...+.........+|++++++||.+ ..|. +.
T Consensus 1053 ~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFS-ygD~lgsg~~~a~~i~~~~~ 1131 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFS-YGDVLGAGKGWAKSILFNPR 1131 (1310)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCC-CccchhHHHHHHHHHHhChH
Confidence 356899999887774 6678899999999888776532211121123799999999954 3332 11
Q ss_pred HHHHHHH-h-CCCCCEEEEehHHHHHHHH---hCCe-----eeeCCCc-ccccceeEEEeCCCCcCccccCCC-CceEEe
Q 031223 87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLS-KYVSIS 154 (163)
Q Consensus 87 ~~~~i~~-~-~~~~PvLGIC~G~QlLa~a---~Gg~-----v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp-~~~~v~ 154 (163)
+.+.+++ + +++.++||||.|+|+|+.- ++|. ..+...+ .|--|. .+++.. ..+++|+++. ..+.++
T Consensus 1132 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~-~~~v~~-s~s~~~~~~~g~~l~~~ 1209 (1310)
T TIGR01735 1132 LRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVA-SVRVGE-SPSIMLRGMAGSRLPVA 1209 (1310)
T ss_pred HHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeee-EEEECC-CCChhhhhcCCCEEEEE
Confidence 2455555 3 6889999999999999943 3332 3333222 222333 455544 2577777664 346777
Q ss_pred eeeec
Q 031223 155 CYNIQ 159 (163)
Q Consensus 155 ~~H~~ 159 (163)
-.|++
T Consensus 1210 vaHgE 1214 (1310)
T TIGR01735 1210 VAHGE 1214 (1310)
T ss_pred eEcCC
Confidence 77755
No 92
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.65 E-value=6.2e-07 Score=85.28 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCH--HHHhccCCCEEEeCCCCCCCCCC---h-----------
Q 031223 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPGAPQDS---G----------- 85 (163)
Q Consensus 23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~--~~~~~~~~dgvvl~GG~~~~~d~---~----------- 85 (163)
.++||+|+.+.+++ ......+++..|++++.+...+... ..+ .++++++++||.+ ..|. +
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l--~~~~~l~~~GGFS-~gD~lgsg~~~a~~~~~n~ 1110 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTL--EDFKGLVACGGFS-YGDVLGAGEGWAKSILFNP 1110 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCCh--hhCcEEEECCccC-CcccchHHHHHHHHhhccH
Confidence 45799999887774 6678999999999988776432211 123 3799999999953 3332 1
Q ss_pred hHHHHHHH-h-CCCCCEEEEehHHHHHHHHhC-----C----eeeeCCCc-ccccceeEEEeCCCCcCccccCCC-CceE
Q 031223 86 ISLQTVLE-L-GPTVPLFGVCMGLQCIGEAFG-----G----KIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLS-KYVS 152 (163)
Q Consensus 86 ~~~~~i~~-~-~~~~PvLGIC~G~QlLa~a~G-----g----~v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp-~~~~ 152 (163)
.+.+.+++ + +++.++||||.|+|+|... | . ++.+...+ .|--|. .+++.. .++++|+++. ..+.
T Consensus 1111 ~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g~l~p~~~~~p~l~~N~s~rfesr~~-~~~v~~-~~s~~~~~~~g~~l~ 1187 (1290)
T PRK05297 1111 RLRDQFEAFFARPDTFALGVCNGCQMMSNL-KEIIPGAEHWPRFVRNRSEQFEARFS-LVEVQE-SPSIFLQGMAGSRLP 1187 (1290)
T ss_pred HHHHHHHHHHhCCCceEEEEcHHHHHHHHh-CCccCCCCCCCeEeecCCCCeEEeee-EEEECC-CCChhHhhcCCCEEE
Confidence 13455556 3 6789999999999999986 3 1 12222211 122232 455543 2677887664 4467
Q ss_pred Eeeeeec
Q 031223 153 ISCYNIQ 159 (163)
Q Consensus 153 v~~~H~~ 159 (163)
++-.|++
T Consensus 1188 ~~vaHge 1194 (1290)
T PRK05297 1188 IAVAHGE 1194 (1290)
T ss_pred EEEEcCc
Confidence 7777764
No 93
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.63 E-value=2.6e-07 Score=72.03 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=55.4
Q ss_pred HHHHHHHcCCEEEEEeCCC--------------------------------CCHHHHhccCCCEEEeCCCCCCC---CC-
Q 031223 40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD- 83 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~--------------------------------~~~~~~~~~~~dgvvl~GG~~~~---~d- 83 (163)
..+.|++.|+++++..+.. .+++++...+||+|+|+||.+.. .|
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 5678899999998876521 12233333479999999995432 11
Q ss_pred ---------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223 84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 84 ---------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G 115 (163)
...+.++++++ ++++|+.+||.|.++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 23567888885 889999999999999999874
No 94
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.62 E-value=1.3e-07 Score=81.62 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=50.6
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCC-CCCC-hhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~-~~d~-~~~~~~i~~~~~~~PvL 101 (163)
|+|-|+... +..++++..|. .++++..+ +.+++. ++|+|||+||... ..+. ..+.+.++++ ++|+|
T Consensus 1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl 69 (476)
T PRK06278 1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII 69 (476)
T ss_pred CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence 357777654 33455666665 56665432 345665 7999999997421 1111 1234445444 79999
Q ss_pred EEehHHHHHHHHh
Q 031223 102 GVCMGLQCIGEAF 114 (163)
Q Consensus 102 GIC~G~QlLa~a~ 114 (163)
|||.|||||++..
T Consensus 70 GICgG~QmLg~~~ 82 (476)
T PRK06278 70 GICSGFQILSEKI 82 (476)
T ss_pred EEcHHHHhccccc
Confidence 9999999999875
No 95
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.60 E-value=3.4e-07 Score=61.01 Aligned_cols=73 Identities=26% Similarity=0.481 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHH-HHhccCCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHH
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~-~~~~~~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlL 110 (163)
..+.+.+++.++++.+++....... .....++|++|++||....... ....+++++ .++++|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 5678889999999999986532111 0112379999999997765543 455677776 46789999999999999
No 96
>PRK00784 cobyric acid synthase; Provisional
Probab=98.57 E-value=1.3e-07 Score=81.85 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=57.7
Q ss_pred CeEEEEEC-CCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-----hHHHHHHH-hCC
Q 031223 25 NPIIVIDN-YDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGP 96 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-----~~~~~i~~-~~~ 96 (163)
.+|+|+.. ...+..+ .+.|++ .|++++.+++. ++++ ++|+|+|+||.....+.. .+.+.|++ .++
T Consensus 252 ~~i~v~~~~~a~~f~n-l~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~ 324 (488)
T PRK00784 252 LRIAVIRLPRISNFTD-FDPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARR 324 (488)
T ss_pred eEEEEEeCCCcCCccC-hHHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHc
Confidence 68999972 2221233 355665 89999888653 3454 789999999864333211 14566666 478
Q ss_pred CCCEEEEehHHHHHHHHh
Q 031223 97 TVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (163)
++|++|||.|+|+|++.+
T Consensus 325 g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 325 GGPVLGICGGYQMLGRRI 342 (488)
T ss_pred CCeEEEECHHHHHHhhhc
Confidence 999999999999999987
No 97
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.56 E-value=4.2e-07 Score=68.51 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=36.9
Q ss_pred CCCEEEeCCCCCCCC--CChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~--d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
+||+|+++||++... ....+.+++++ +++++|+.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999974321 23456788888 47899999999999999997
No 98
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.49 E-value=6e-07 Score=66.50 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEE
Q 031223 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL 101 (163)
.+.+.|++.|+++.++.... .+++++...+||+|+++||+... ...+.+.++++++ ++++|+.
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~ 96 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA 96 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence 35678888898888775431 11222222369999999996521 1234578888885 7889999
Q ss_pred EEehHHHHHHHH
Q 031223 102 GVCMGLQCIGEA 113 (163)
Q Consensus 102 GIC~G~QlLa~a 113 (163)
+||.|.++|+.+
T Consensus 97 ~ic~G~~~La~a 108 (166)
T TIGR01382 97 AICHGPQLLISA 108 (166)
T ss_pred EEChHHHHHHhc
Confidence 999999999986
No 99
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.44 E-value=7.7e-07 Score=56.77 Aligned_cols=73 Identities=26% Similarity=0.477 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHH-HHhccCCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHH
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~-~~~~~~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlL 110 (163)
..+.+.+++.++.+.+++....... .....++|++|++||+...... ....+++.+ ..+++|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 4677888889999998876532211 1123489999999998766543 445566665 46789999999999874
No 100
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.42 E-value=8.8e-07 Score=76.10 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=58.8
Q ss_pred CeEEEEECCCC-hH-HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC-----ChhHHHHHHHh-CC
Q 031223 25 NPIIVIDNYDS-FT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-----SGISLQTVLEL-GP 96 (163)
Q Consensus 25 ~~Ilvid~~~~-~~-~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d-----~~~~~~~i~~~-~~ 96 (163)
.+|+|+-.... |. ..=.+.|++.|+++..+++. ..++++ ++|+|||+||.....+ ...+.+.|+++ ++
T Consensus 246 ~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~ 321 (451)
T PRK01077 246 VRIAVARDAAFNFYYPENLELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAA 321 (451)
T ss_pred ceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHc
Confidence 58999954322 22 12346678899998887642 112343 7999999999643211 12346777774 78
Q ss_pred CCCEEEEehHHHHHHHHh
Q 031223 97 TVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (163)
++|++|||-|+|+|++.+
T Consensus 322 g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 322 GKPIYAECGGLMYLGESL 339 (451)
T ss_pred CCCEEEEcHHHHHHHhhh
Confidence 899999999999999987
No 101
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.41 E-value=1.1e-06 Score=68.30 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCCCeEEEEECCC----ChHHHHHHHHHHc-CCEEEEEeCCC-CC-HHHHhccCCCEEEeCCCCCCCCCC------hhHH
Q 031223 22 NNKNPIIVIDNYD----SFTYNLCQYMGEL-GYHFEVYRNDE-LT-VEELKRKNPRGVLISPGPGAPQDS------GISL 88 (163)
Q Consensus 22 ~~~~~Ilvid~~~----~~~~~~~~~l~~~-G~~~~v~~~~~-~~-~~~~~~~~~dgvvl~GG~~~~~d~------~~~~ 88 (163)
+...+|++|-... .+..++.++++++ |++++.+.... .. .+.+. ++|+|+++||. .... ..+.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG~--~~~~~~~l~~~~l~ 104 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGGN--TFNLLAQWREHGLD 104 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCch--HHHHHHHHHHcCHH
Confidence 4567899995433 3456688889999 99888776321 11 23343 79999999872 2211 1245
Q ss_pred HHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 89 QTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 89 ~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
+.+++ +++++|++|+|.|+|++...
T Consensus 105 ~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 105 AILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 56666 46889999999999999885
No 102
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.37 E-value=2.3e-06 Score=67.45 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=54.2
Q ss_pred HHHHHHHcCCEEEEEeCCCC------------------------------------CHHHHhccCCCEEEeCCCCCCCC-
Q 031223 40 LCQYMGELGYHFEVYRNDEL------------------------------------TVEELKRKNPRGVLISPGPGAPQ- 82 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~------------------------------------~~~~~~~~~~dgvvl~GG~~~~~- 82 (163)
..+.|++.|+++++..+... .++++...+||+|+|+||.+...
T Consensus 30 p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~d 109 (231)
T cd03147 30 PFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFD 109 (231)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchhhh
Confidence 56788899999998764210 12222334899999999965433
Q ss_pred --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+...+.++++++ ++++|+.+||.|.++|+.+
T Consensus 110 l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 110 FPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 334567888885 7899999999999999987
No 103
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.36 E-value=1.9e-06 Score=62.43 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=60.5
Q ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC---CCC
Q 031223 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDS 84 (163)
Q Consensus 25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~---~d~ 84 (163)
++|+|+=..+.. ...+.+.|+..|+++.++..+.. ++++....+||+++|+||.... .+.
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~ 81 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence 456666432221 23477888889999998865421 1112222258999999986542 234
Q ss_pred hhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 85 GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 85 ~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
..+.+++++ ..+++|+.+||-|..+|+.+
T Consensus 82 ~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 82 GRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 567888988 47899999999999999984
No 104
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.34 E-value=3e-06 Score=62.70 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCEEEEEeCC-CC---------------CHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCC
Q 031223 39 NLCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~-~~---------------~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~P 99 (163)
.+.+.|++.|+++.++..+ .. ++++....+||+|+++||+... .+...+.++|+++ ++++|
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP 96 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence 3667788889998888654 21 1122222368999999997422 1234578888884 78999
Q ss_pred EEEEehHHHHHHHH
Q 031223 100 LFGVCMGLQCIGEA 113 (163)
Q Consensus 100 vLGIC~G~QlLa~a 113 (163)
+.+||.|.++|+.+
T Consensus 97 i~~ic~G~~~La~a 110 (165)
T cd03134 97 VAAICHGPWVLISA 110 (165)
T ss_pred EEEEchHHHHHHhc
Confidence 99999999999986
No 105
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.34 E-value=4.2e-06 Score=68.08 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=67.2
Q ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCEEEE--EeCCC---------------CCHHHHhccCCCEEEeCCCCCCCCCC
Q 031223 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAPQDS 84 (163)
Q Consensus 25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v--~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~d~ 84 (163)
.+|+|++.-..- ...+.+.|......+++ +.... .+++++....+||+||+|.|-.--+.
T Consensus 35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F 114 (298)
T PF04204_consen 35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF 114 (298)
T ss_dssp EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence 689999886542 22355555554444443 32211 23444555689999999998643221
Q ss_pred ------hhHHHHHHHh-CCCCCEEEEehHHHH-HHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeee
Q 031223 85 ------GISLQTVLEL-GPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCY 156 (163)
Q Consensus 85 ------~~~~~~i~~~-~~~~PvLGIC~G~Ql-La~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~ 156 (163)
+++.+++.-. .+..+.|.||.|+|. |...+|-.-...+. --.|... -.+.. ..+||++|+++.|.+-++
T Consensus 115 e~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~-KlfGVf~-~~~~~-~~~pLl~Gfdd~f~~PhS 191 (298)
T PF04204_consen 115 EEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE-KLFGVFE-HRVLD-PDHPLLRGFDDTFFAPHS 191 (298)
T ss_dssp GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE-EEEEEEE-EEES--SS-GGGTT--SEEEEEEE
T ss_pred ccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC-cceecee-eeccC-CCChhhcCCCccccCCcc
Confidence 1223333222 355899999999999 67778887776652 2346652 23222 268999999998888766
Q ss_pred eec
Q 031223 157 NIQ 159 (163)
Q Consensus 157 H~~ 159 (163)
-.-
T Consensus 192 R~t 194 (298)
T PF04204_consen 192 RYT 194 (298)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 106
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.33 E-value=7.1e-06 Score=62.55 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=58.9
Q ss_pred CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCC-----------------CCHHHHhccCCCEEEeCCCCCCC
Q 031223 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAP 81 (163)
Q Consensus 23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~~~~~dgvvl~GG~~~~ 81 (163)
+++||+|+-.. .| .....+.|++.|+++.+..... .+++++...++|.|+|+||....
T Consensus 1 ~~~~~~il~~~-g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~ 79 (196)
T PRK11574 1 MSASALVCLAP-GSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA 79 (196)
T ss_pred CCceEEEEeCC-CcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh
Confidence 34677777432 22 2236678888888887764320 11223222369999999986433
Q ss_pred C---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 82 Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 82 ~---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
. +...+.++++++ ++++++.+||-|..+|+..
T Consensus 80 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 80 ECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred hhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 2 334578899885 7899999999999976543
No 107
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.28 E-value=1.9e-06 Score=73.96 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=57.6
Q ss_pred CeEEEEECCC-Ch-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-----hhHHHHHHHh-CC
Q 031223 25 NPIIVIDNYD-SF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GP 96 (163)
Q Consensus 25 ~~Ilvid~~~-~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-----~~~~~~i~~~-~~ 96 (163)
.+|+|+.... .| -..=.+.|++.|+++..+++- ..++++ ++|+|+|+||.....+. ..+.+.|+++ ++
T Consensus 245 ~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~ 320 (449)
T TIGR00379 245 VRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQ 320 (449)
T ss_pred cEEEEEechhhceeHHHHHHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 5899994321 11 112345688889998887652 112343 79999999996432221 1245666664 78
Q ss_pred CCCEEEEehHHHHHHHHh
Q 031223 97 TVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (163)
++|++|+|-|+|+|++.+
T Consensus 321 G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 321 GLPIYGECGGLMYLSQSL 338 (449)
T ss_pred CCCEEEEcHHHHHHHhhh
Confidence 899999999999999987
No 108
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.27 E-value=4.4e-06 Score=63.26 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=59.9
Q ss_pred CeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCC-----------------CCHHHHhccCCCEEEeCCCCCCC-CC
Q 031223 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAP-QD 83 (163)
Q Consensus 25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~~~~~dgvvl~GG~~~~-~d 83 (163)
++|+++-+.+- ......+.|++.|+++++..... ...++....+||+++++||...+ ..
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~ 82 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYL 82 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhc
Confidence 45666643221 12246788999999887765431 01111222489999999994433 22
Q ss_pred C--hhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223 84 S--GISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 84 ~--~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~ 114 (163)
. ..+.++++++ ++++||.+||.|.++|+.+-
T Consensus 83 ~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 83 RPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred cCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 2 4678888885 78999999999999998764
No 109
>PHA03366 FGAM-synthase; Provisional
Probab=98.21 E-value=9.8e-06 Score=77.30 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---h-----------
Q 031223 21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G----------- 85 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~----------- 85 (163)
+..++||+|+.+.+++ ......++...|+++..+...+...... ..++++|+++||.+ ..|. +
T Consensus 1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS-~gD~l~~~~~~a~~il~n~ 1102 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSG-AEDSYTGARAAVAALLSNP 1102 (1304)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCC-CcccccHHHHHHHHhhhch
Confidence 3456899999887674 6678999999999988776532211121 23799999999954 3332 1
Q ss_pred hHHHHHHHh--CCCCCEEEEeh-HHHHHHHH
Q 031223 86 ISLQTVLEL--GPTVPLFGVCM-GLQCIGEA 113 (163)
Q Consensus 86 ~~~~~i~~~--~~~~PvLGIC~-G~QlLa~a 113 (163)
.+.+.++++ +++.++||||. |+|+|+..
T Consensus 1103 ~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1103 AVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 234556664 56899999998 99999884
No 110
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.19 E-value=9.9e-06 Score=60.51 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=52.0
Q ss_pred HHHHHHHHc-CCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCC-CCCChhHHHHHHHh-CCCCCEE
Q 031223 39 NLCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 39 ~~~~~l~~~-G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~-~~d~~~~~~~i~~~-~~~~PvL 101 (163)
...+.|++. ++++.++..+. .++++....++|.++|+||+.. ......+.++++++ ++++++.
T Consensus 16 ~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~ 95 (170)
T cd03140 16 YLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVA 95 (170)
T ss_pred HHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEE
Confidence 355667664 67777765431 1233332236999999999642 22334578888885 7889999
Q ss_pred EEehHHHHHHHH
Q 031223 102 GVCMGLQCIGEA 113 (163)
Q Consensus 102 GIC~G~QlLa~a 113 (163)
+||-|.++|+.+
T Consensus 96 aic~G~~~La~a 107 (170)
T cd03140 96 AICGATLALARA 107 (170)
T ss_pred EEChHHHHHHHC
Confidence 999999999996
No 111
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.15 E-value=1.3e-05 Score=68.52 Aligned_cols=84 Identities=15% Similarity=0.301 Sum_probs=55.1
Q ss_pred CeEEEEECCC-C--hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHH-hCC
Q 031223 25 NPIIVIDNYD-S--FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGP 96 (163)
Q Consensus 25 ~~Ilvid~~~-~--~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~-~~~ 96 (163)
.+|+|-.-.. + |..++ +.|++. +++..+++- ..++++ ++|+|+|+||.....+.. ...+.|++ .++
T Consensus 234 ~~iavA~D~AF~FyY~enl-~~L~~~-aelv~fSPl--~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~ 307 (433)
T PRK13896 234 PTVAVARDAAFCFRYPATI-ERLRER-ADVVTFSPV--AGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAAD 307 (433)
T ss_pred CeEEEEEcCccceeCHHHH-HHHHhc-CcEEEEcCC--CCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHC
Confidence 5898884211 1 24443 567777 777766652 123444 789999999964433211 12355666 478
Q ss_pred CCCEEEEehHHHHHHHHh
Q 031223 97 TVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (163)
++|++|+|-|+|+|++.+
T Consensus 308 G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 308 GLPVLGECGGLMALAESL 325 (433)
T ss_pred CCcEEEEehHHHHhhccc
Confidence 999999999999999986
No 112
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.13 E-value=2e-06 Score=63.82 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=37.1
Q ss_pred CCCEEEeCCCCCCCCCCh-----hHHHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223 68 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~-----~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~G 115 (163)
++|+|+|+||.....+.. .+.+.|++ .++++||+|||-|+|+|.+.+=
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 799999988864433322 24677777 4789999999999999999863
No 113
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.11 E-value=2.2e-05 Score=63.64 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=79.0
Q ss_pred CCeEEEEECCCC---hHHHHHHHHHHcCCE--EEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCCCC-
Q 031223 24 KNPIIVIDNYDS---FTYNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAPQ- 82 (163)
Q Consensus 24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~--~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~- 82 (163)
..+|+|++.-.. ....+.|.|...... ++.+.... .+++++....+||+||+|.|-.--
T Consensus 35 pL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~ 114 (300)
T TIGR01001 35 PLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVP 114 (300)
T ss_pred ceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCC
Confidence 368999987543 233477777554444 44333221 345556666899999999986422
Q ss_pred -CC----hhHHHHHHHh-CCCCCEEEEehHHHHH-HHHhCCeeeeCCCcccccce-eEEEeCCCCcCccccCCCCceEEe
Q 031223 83 -DS----GISLQTVLEL-GPTVPLFGVCMGLQCI-GEAFGGKIVRSPLGVMHGKS-SLVYYDEKGEDGLLAGLSKYVSIS 154 (163)
Q Consensus 83 -d~----~~~~~~i~~~-~~~~PvLGIC~G~QlL-a~a~Gg~v~~~~~~~e~G~~-~~i~~~~~~~~~lf~~lp~~~~v~ 154 (163)
+. +++.+++.-. .+-...|.||.|+|.. ...+|-.=...+. --.|.. |.+. . .+||++|+++.|.+-
T Consensus 115 FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~-KlfGVf~h~~~--~--~~pL~rGfdd~f~~P 189 (300)
T TIGR01001 115 FEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPE-KLSGVYKHDIA--P--DSLLLRGFDDFFLAP 189 (300)
T ss_pred cccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCC-ceEEeecCccC--C--CCccccCCCCccccC
Confidence 11 1233333322 4668999999999994 5556765555542 234643 2232 2 689999999888876
Q ss_pred eee
Q 031223 155 CYN 157 (163)
Q Consensus 155 ~~H 157 (163)
++-
T Consensus 190 hSR 192 (300)
T TIGR01001 190 HSR 192 (300)
T ss_pred CCC
Confidence 654
No 114
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.11 E-value=1.8e-05 Score=62.45 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=37.3
Q ss_pred cCCCEEEeCCCCCCCCC---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 67 KNPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~~d---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+||+|+++||.+...+ ...+.++++++ ++++||..||.|.+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 47999999999654443 34567788885 8899999999999988765
No 115
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.09 E-value=2.8e-05 Score=57.05 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCEEEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCCC---CCChhHHHHHHHh-CCCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~---~d~~~~~~~i~~~-~~~~P 99 (163)
.+.+.|+..|+++.++.++. .++++....+||.++|+||+... .+.+.+.++++++ .++++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence 46778888888888775431 11222222479999999997322 2345678888884 78899
Q ss_pred EEEEehHHHHHHHH
Q 031223 100 LFGVCMGLQCIGEA 113 (163)
Q Consensus 100 vLGIC~G~QlLa~a 113 (163)
+.+||-|..+|+.+
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999997
No 116
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.09 E-value=2.3e-05 Score=74.42 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCCCCCCCCCC---h-----------h
Q 031223 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDS---G-----------I 86 (163)
Q Consensus 23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~GG~~~~~d~---~-----------~ 86 (163)
...||+|+.+.+++ ......+++..|+++..+...+.. -..+ .+++|+++.||.+ ..|. + .
T Consensus 928 ~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l--~~f~glv~~Ggfs-y~D~lgsg~~~a~~il~n~~ 1004 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL--DTFSGLIIGGASG-TLDSEVGARALAAALLRNQA 1004 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch--hheEEEEEcCcCC-CCccchHHHHHHHHhhcchH
Confidence 35689999887664 667899999999998877654221 1123 3799999987744 3332 1 1
Q ss_pred HHHHHHHh--CCCCCEEEEeh-HHHHHHHH
Q 031223 87 SLQTVLEL--GPTVPLFGVCM-GLQCIGEA 113 (163)
Q Consensus 87 ~~~~i~~~--~~~~PvLGIC~-G~QlLa~a 113 (163)
+.+.++++ +++.++||||. |+|+|+..
T Consensus 1005 ~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1005 FLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 34555553 56899999998 99999884
No 117
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.08 E-value=3.9e-06 Score=72.58 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=49.8
Q ss_pred CeEEEEEC-C-CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-----hHHHHHHHh-CC
Q 031223 25 NPIIVIDN-Y-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GP 96 (163)
Q Consensus 25 ~~Ilvid~-~-~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-----~~~~~i~~~-~~ 96 (163)
.+|+|+.. . ..|. + .+.|++. +...+.+. .++++ ++|+|+|+||.....+.. .+.+.|+++ ++
T Consensus 248 ~~Iav~~~~~~~nf~-~-~~~L~~~--~~~~f~~~---~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~ 318 (475)
T TIGR00313 248 IRIGVVRLPRISNFT-D-FEPLRYE--AFVKFLDL---DDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKE 318 (475)
T ss_pred cEEEEEcCCcccCcc-C-hHHHhhC--CCeEEeCC---ccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHc
Confidence 68999962 1 1233 2 3445544 22222221 23444 789999988863322211 135666664 68
Q ss_pred CCCEEEEehHHHHHHHHh
Q 031223 97 TVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~ 114 (163)
+.||+|||-|+|+|++.+
T Consensus 319 G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 319 GGIVIGICGGYQMLGKEL 336 (475)
T ss_pred CCcEEEEcHHHHHhhhhh
Confidence 899999999999999975
No 118
>PRK04155 chaperone protein HchA; Provisional
Probab=98.07 E-value=1.7e-05 Score=64.55 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=53.7
Q ss_pred HHHHHHHcCCEEEEEeCCCCC-------------------------------HHHHh------ccCCCEEEeCCCCCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT-------------------------------VEELK------RKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~-------------------------------~~~~~------~~~~dgvvl~GG~~~~~ 82 (163)
..+.|++.|+++++..+.... ++++. ..+||+|+|+||.+...
T Consensus 82 P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 82 PMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALI 161 (287)
T ss_pred HHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHH
Confidence 567899999999988652100 22221 35899999999976544
Q ss_pred C---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 D---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 d---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+ ...+.++++++ ++++||.+||.|.++|..+
T Consensus 162 dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 162 GLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 3 33467788874 7899999999999987764
No 119
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=98.05 E-value=2e-05 Score=61.55 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=38.4
Q ss_pred cCCCEEEeCCCCCCCC---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+||+|+|+||++... +...+.++++++ ++++++.+||.|.++|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 4799999999975432 345678899885 7899999999999999986
No 120
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.04 E-value=2.7e-05 Score=59.05 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=53.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHH-hCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTV 98 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~-~~~~~ 98 (163)
|+|-|+-.-+.+.. =.+.++++ |+++..++ .+++++ +.||+||+||-+..- ....+.+.+++ ..+++
T Consensus 1 m~IGVLalQG~v~E-H~~~l~~~~~~e~~~Vk----~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~ 73 (194)
T COG0311 1 MKIGVLALQGAVEE-HLEALEKAGGAEVVEVK----RPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGL 73 (194)
T ss_pred CeEEEEEecccHHH-HHHHHHhhcCCceEEEc----CHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence 35666644333332 23567777 47766664 256765 799999999965321 11123455555 57899
Q ss_pred CEEEEehHHHHHHHH
Q 031223 99 PLFGVCMGLQCIGEA 113 (163)
Q Consensus 99 PvLGIC~G~QlLa~a 113 (163)
|++|-|-|+-+||.-
T Consensus 74 Pv~GTCAGlIlLake 88 (194)
T COG0311 74 PVFGTCAGLILLAKE 88 (194)
T ss_pred ceEEechhhhhhhhh
Confidence 999999999999963
No 121
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.93 E-value=3.1e-05 Score=61.19 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=67.5
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCC------ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~------~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~ 81 (163)
+.+|..++.+.-. ..++|++|-..+ .|...+.++++.+|+++..++..+...+.+. +.|+|+++||....
T Consensus 17 l~~~~~~~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~ 92 (233)
T PRK05282 17 LEHALPLIAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQ 92 (233)
T ss_pred HHHHHHHHHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHH
Confidence 3556666666533 457899994432 2455677888899999887764311122243 79999999984321
Q ss_pred C----CChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223 82 Q----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 82 ~----d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~G 115 (163)
. ....+.+.|++ +++++|+.|.|-|+-+++...+
T Consensus 93 l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 93 LLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 1 11124566665 5788999999999988776544
No 122
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.89 E-value=7.9e-06 Score=62.16 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=43.9
Q ss_pred HHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHHh-CCC-CCEEEEehHHHHHHHH
Q 031223 41 CQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGLQCIGEA 113 (163)
Q Consensus 41 ~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~~-~~~-~PvLGIC~G~QlLa~a 113 (163)
.+.|+.+|.+...++. .+++. ++||+||+||-++.- ....+.+.++++ .++ +|++|.|-||-+||..
T Consensus 12 ~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~ 84 (188)
T PF01174_consen 12 IRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE 84 (188)
T ss_dssp HHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred HHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence 4678889998876653 46665 799999999954321 111245667774 454 9999999999999874
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.86 E-value=3.1e-05 Score=66.58 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=52.5
Q ss_pred CCCeEEEEECC--CChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh-----HHHHHHH-
Q 031223 23 NKNPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE- 93 (163)
Q Consensus 23 ~~~~Ilvid~~--~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~-----~~~~i~~- 93 (163)
...+|+|+..- +.|+. .+.|+. .++.+.++++. +++. ++|.+||+|+-....|... +.+.+.+
T Consensus 250 ~~i~Iav~~lp~isNFtD--~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~ 321 (486)
T COG1492 250 RAIRIAVIRLPRISNFTD--FDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEY 321 (486)
T ss_pred CceEEEEecCCCcccccc--chhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHH
Confidence 44688888432 21222 233443 37778777653 3444 5899999776544444321 3334444
Q ss_pred hCCCCCEEEEehHHHHHHHHh
Q 031223 94 LGPTVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 94 ~~~~~PvLGIC~G~QlLa~a~ 114 (163)
..++.|++|||-|+|||...+
T Consensus 322 ~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 322 ARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred HhCCCCEEEEcchHHhhhhhh
Confidence 567899999999999998763
No 124
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=97.84 E-value=8e-05 Score=55.65 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCEEEE--EeCCC---------------CCHHHHhccCCCEEEeCCCCCCC---CCChhHHHHHHHh-CCC
Q 031223 39 NLCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPT 97 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v--~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~---~d~~~~~~~i~~~-~~~ 97 (163)
.+.+.|+..|+++++ +..+. .++++....+||.|+|+||.... .+.+.+.++++++ .++
T Consensus 17 ~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~ 96 (179)
T TIGR01383 17 ITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG 96 (179)
T ss_pred HHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC
Confidence 366778887866664 43320 11222222369999999985322 2345678899885 788
Q ss_pred CCEEEEehHHHHHHHH
Q 031223 98 VPLFGVCMGLQCIGEA 113 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a 113 (163)
+++.+||-|..+|+.+
T Consensus 97 ~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 97 KLVAAICAAPAVLLAA 112 (179)
T ss_pred CEEEEEChhHHHHHhc
Confidence 9999999999999997
No 125
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.82 E-value=0.00017 Score=54.32 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=38.0
Q ss_pred CCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
++|.|+|+||.... .+...+.++++++ .+++++.+||-|.++|+.+
T Consensus 64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 79999999986543 2345678899885 7889999999999999997
No 126
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.75 E-value=8.8e-06 Score=59.42 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=41.3
Q ss_pred CHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 60 TVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 60 ~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+++++...+||+|||+||.+... +...+.++++++ ++++|+.+||.|..+|+.+
T Consensus 29 ~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 29 TLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred cHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 46677666899999999976332 335678888885 7899999999999999887
No 127
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.74 E-value=0.0001 Score=66.75 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=63.3
Q ss_pred CCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCCC---
Q 031223 23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ--- 82 (163)
Q Consensus 23 ~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~~--- 82 (163)
.+.+|+||-..+.. ...+.++|++.|+.+.++..... ++++.....||+|+|.||...+.
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~ 675 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA 675 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence 55788888443222 33477888999999998865311 11122223699999999865432
Q ss_pred CChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 83 DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
.......+|++ ++..|+|.+||-|.++|+.+
T Consensus 676 ~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 676 DNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 33457888988 57889999999999999974
No 128
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.71 E-value=7.3e-05 Score=52.76 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=29.2
Q ss_pred CCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHH
Q 031223 68 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlL 110 (163)
++|.+|++||.....-. ..-.+.|++ .++++|+||||+|+-+.
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence 79999998865432110 001556666 47889999999999655
No 129
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.54 E-value=7.5e-05 Score=58.11 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=47.6
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-----CCChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-----QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-----~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
+.++.+.+|+.+++.+.+.. +.++...+|.+++.||.+-. .+...-.+.+++ +++++|+|.||-|.|+|.++
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~--d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLT--DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ehHHHHhcCCceEEEEeecC--CCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 55677778999998875421 22333479988886653211 111112344555 57899999999999999986
Q ss_pred h
Q 031223 114 F 114 (163)
Q Consensus 114 ~ 114 (163)
+
T Consensus 104 Y 104 (250)
T COG3442 104 Y 104 (250)
T ss_pred e
Confidence 4
No 130
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.48 E-value=0.00062 Score=50.91 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=50.8
Q ss_pred HHHHHHHHcC-----CEEEEEeCCCCC----------H-HHHh-ccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCC
Q 031223 39 NLCQYMGELG-----YHFEVYRNDELT----------V-EELK-RKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTV 98 (163)
Q Consensus 39 ~~~~~l~~~G-----~~~~v~~~~~~~----------~-~~~~-~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~ 98 (163)
.+.+.|+..+ +++.++..+..+ . ..+. ...||+|||+||.+.. .....+.++++++ .+++
T Consensus 16 ~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k 95 (183)
T cd03139 16 GPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAK 95 (183)
T ss_pred eHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCC
Confidence 3566666666 777776543110 0 0111 1279999999996532 2334578899884 7899
Q ss_pred CEEEEehHHHHHHHH
Q 031223 99 PLFGVCMGLQCIGEA 113 (163)
Q Consensus 99 PvLGIC~G~QlLa~a 113 (163)
++.+||-|..+|+.+
T Consensus 96 ~i~aic~g~~~La~a 110 (183)
T cd03139 96 YVTSVCTGALLLAAA 110 (183)
T ss_pred EEEEEchHHHHHHhc
Confidence 999999999999885
No 131
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.39 E-value=0.00072 Score=53.01 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHcCCEEEEEeCCC---------------CCHHHHhccCCCEEEeCCC-CCCCC--CChhHHHHHHHh-CCCCCE
Q 031223 40 LCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLEL-GPTVPL 100 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG-~~~~~--d~~~~~~~i~~~-~~~~Pv 100 (163)
..+.|++.|+++.+..++. ....+....+||.|||+|| ++... +...+.++++++ +.++++
T Consensus 24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLI 103 (247)
T KOG2764|consen 24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLI 103 (247)
T ss_pred eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeE
Confidence 4688999999999886431 1122222358999999999 66533 334567888885 689999
Q ss_pred EEEehHHHHH
Q 031223 101 FGVCMGLQCI 110 (163)
Q Consensus 101 LGIC~G~QlL 110 (163)
..||.|--++
T Consensus 104 aaICaap~~a 113 (247)
T KOG2764|consen 104 AAICAAPLTA 113 (247)
T ss_pred EEeecchHHH
Confidence 9999986333
No 132
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.23 E-value=0.0022 Score=49.47 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCCC-CCHHHH-h-ccCCCEEEeCCCCCCCC----CChhHHHHH
Q 031223 23 NKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LTVEEL-K-RKNPRGVLISPGPGAPQ----DSGISLQTV 91 (163)
Q Consensus 23 ~~~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~-~-~~~~dgvvl~GG~~~~~----d~~~~~~~i 91 (163)
...+|++|.... .+...+.++++++|++...+.... .+.++. . -.+.|+|+++||..... ......+.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 568899996654 355568888899999877665321 111221 1 13799999999843211 011123334
Q ss_pred H-HhCCCCCEEEEehHHHHHHHH
Q 031223 92 L-ELGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 92 ~-~~~~~~PvLGIC~G~QlLa~a 113 (163)
+ .+.++.|+.|+|-|+.+++..
T Consensus 108 ~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 108 LKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHcCCeEEEcCHHHHHhhhc
Confidence 4 356889999999999999986
No 133
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=97.19 E-value=0.001 Score=52.77 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHH-----HHh--CCCCCEEEEehHH
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTV-----LEL--GPTVPLFGVCMGL 107 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i-----~~~--~~~~PvLGIC~G~ 107 (163)
..+++..++..|+.+..+.+++ +.+.+. .+-..|||++||-....|.-++.+.+ .+. ....||.|||+|+
T Consensus 79 AASYVK~aEsgGARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGF 157 (340)
T KOG1559|consen 79 AASYVKLAESGGARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGF 157 (340)
T ss_pred HHHHHHHHHcCCceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhH
Confidence 3457777888899998887763 322221 23589999999944434443333332 222 3578999999999
Q ss_pred HHHHHHh
Q 031223 108 QCIGEAF 114 (163)
Q Consensus 108 QlLa~a~ 114 (163)
.+|....
T Consensus 158 E~lsmiI 164 (340)
T KOG1559|consen 158 ELLSMII 164 (340)
T ss_pred HHHHHHH
Confidence 9998753
No 134
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.10 E-value=0.001 Score=50.39 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=37.2
Q ss_pred CCCEEEeCCCCCCC-----CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAP-----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~-----~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+||.|+|+||.... .....+.++++++ .+++++.+||-|.++|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 79999999986532 2234578888884 7889999999999999986
No 135
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0058 Score=48.80 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=72.6
Q ss_pred CeEEEEECCCCh---HHHHHHHHHH--cCCEEEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCCCCCC
Q 031223 25 NPIIVIDNYDSF---TYNLCQYMGE--LGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAPQDS 84 (163)
Q Consensus 25 ~~Ilvid~~~~~---~~~~~~~l~~--~G~~~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~d~ 84 (163)
.+|+|++.-..- ...+.|.|.. +.++++.+..+. .++++++..++||+||+|.|-.--+.
T Consensus 36 L~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAPve~l~f 115 (307)
T COG1897 36 LKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGAPVELLPF 115 (307)
T ss_pred ceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCCcccccCc
Confidence 579999875432 2224555543 223444443321 24556666789999999998643222
Q ss_pred hh---H--HHHHHHh--CCCCCEEEEehHHHHHHHHh-CCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeee
Q 031223 85 GI---S--LQTVLEL--GPTVPLFGVCMGLQCIGEAF-GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCY 156 (163)
Q Consensus 85 ~~---~--~~~i~~~--~~~~PvLGIC~G~QlLa~a~-Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~ 156 (163)
++ + ...|.++ ..---.|-||.|+|.--.++ |-.=...+. .--|....-.+.. .++|++|+.+.|.+-++
T Consensus 116 eeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~GVy~h~~l~p--~~~l~rGfdd~f~~PhS 192 (307)
T COG1897 116 EEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPE-KLSGVYKHDILSP--HSLLTRGFDDSFLAPHS 192 (307)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccch-hhhceeeccccCc--cchhhccCCccccCccc
Confidence 11 1 1222222 23346789999999876665 544333331 1235542222222 67899999888877654
Q ss_pred e
Q 031223 157 N 157 (163)
Q Consensus 157 H 157 (163)
.
T Consensus 193 R 193 (307)
T COG1897 193 R 193 (307)
T ss_pred c
Confidence 3
No 136
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=96.90 E-value=0.0091 Score=48.88 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCEEEeCCCCCCC-CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
++|.||++||.... .....+.++|++. .++++|.+||-|.-+||.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 79999998885422 2234578888885 6889999999999999986
No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.82 E-value=0.013 Score=50.06 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=80.7
Q ss_pred CeEEEEECCCChH---HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-----CChhHHHHHHHh-C
Q 031223 25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-G 95 (163)
Q Consensus 25 ~~Ilvid~~~~~~---~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-----d~~~~~~~i~~~-~ 95 (163)
.||+|..-. .|. ..-.+.|+++|++++.+++- ..++++ .+.|+|.|.||.-..+ +.....+.|+++ +
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP-~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~ 321 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLREAGAELVFFSPL--ADEELP-PDVDAVYLGGGYPELFAEELSANESMRRAIKAFAA 321 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHHCCCEEEEeCCc--CCCCCC-CCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHH
Confidence 589998432 222 23457789999999888753 123443 2599999999854322 223357778875 7
Q ss_pred CCCCEEEEehHHHHHHHHh---CCeeeeCC----------Cc-ccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 96 PTVPLFGVCMGLQCIGEAF---GGKIVRSP----------LG-VMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a~---Gg~v~~~~----------~~-~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+++|++|=|-|+--|++.+ .|..+.+- .. ...|+. .++.. ++.++..-.+++.-..||.-.+
T Consensus 322 ~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~-~~~~~---~d~~~~~~G~~irGHEFHyS~~ 397 (451)
T COG1797 322 AGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYR-EAEAV---DDTLLLRAGEKIRGHEFHYSRL 397 (451)
T ss_pred cCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhcccee-EEEec---CCcccccCCceeeeeeeeeeec
Confidence 8999999999999888875 33443331 00 113443 33332 3344445556788888887654
No 138
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=96.78 E-value=0.0017 Score=47.95 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=36.8
Q ss_pred cCCCEEEeCCCCC--CCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 67 KNPRGVLISPGPG--APQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 67 ~~~dgvvl~GG~~--~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.++|.|||+||+. .....+.+.+++++. .+++++.+||-|..+|+++
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 3799999999987 122335678888874 7889999999999999997
No 139
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0095 Score=44.85 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=45.5
Q ss_pred HHHHHHHc--CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC----ChhHHHHHHHh-C-CCCCEEEEehHHHHHH
Q 031223 40 LCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-G-PTVPLFGVCMGLQCIG 111 (163)
Q Consensus 40 ~~~~l~~~--G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d----~~~~~~~i~~~-~-~~~PvLGIC~G~QlLa 111 (163)
+.+.+.+. ++..++.+. .+.+++. ++|++||+||.+..-. ...+.+-+.++ . ..+|++|.|-||-.|.
T Consensus 30 ~~~c~~en~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS 105 (226)
T KOG3210|consen 30 VEKCIVENRYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLS 105 (226)
T ss_pred HHHhhccCcceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhh
Confidence 44555554 455555554 3566765 8999999999653211 11234444554 3 4599999999999997
Q ss_pred HHh
Q 031223 112 EAF 114 (163)
Q Consensus 112 ~a~ 114 (163)
.-+
T Consensus 106 ~ql 108 (226)
T KOG3210|consen 106 QQL 108 (226)
T ss_pred hhh
Confidence 754
No 140
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=96.50 E-value=0.0057 Score=45.94 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCCEEEeCCCCCCC-CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
++|.|||+||.... ...+.+.+++++. ++++.|.+||-|..+|+.+
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 79999999985433 2334578899884 7889999999999999986
No 141
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.013 Score=54.03 Aligned_cols=135 Identities=11% Similarity=0.136 Sum_probs=72.8
Q ss_pred CCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC--CC-----CCh------hHHH
Q 031223 24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA--PQ-----DSG------ISLQ 89 (163)
Q Consensus 24 ~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~--~~-----d~~------~~~~ 89 (163)
.+||+||.-.+.+ ...+..++...|+++.=+...+.-......++|.||++.||..= +. +.. ....
T Consensus 1058 ~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~ 1137 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRS 1137 (1320)
T ss_pred CCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHH
Confidence 4589999876665 44577888889987543322111111111237999999999541 11 111 1222
Q ss_pred HHHHh--CCCCCEEEEehHHHHHHHH--hCCeeeeCC--------CcccccceeEEEeCCCCcCccccCCC-CceEEeee
Q 031223 90 TVLEL--GPTVPLFGVCMGLQCIGEA--FGGKIVRSP--------LGVMHGKSSLVYYDEKGEDGLLAGLS-KYVSISCY 156 (163)
Q Consensus 90 ~i~~~--~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~--------~~~e~G~~~~i~~~~~~~~~lf~~lp-~~~~v~~~ 156 (163)
...++ .++.--||||.|+|+|++. .|-.+...+ .+..-+....+++.. ..+-++++.. ..+-++.-
T Consensus 1138 QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~-~~SIml~gM~gs~LgvwvA 1216 (1320)
T KOG1907|consen 1138 QFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIES-NVSIMLSGMAGSVLGVWVA 1216 (1320)
T ss_pred HHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCC-CchhhhccccCCceeeEEE
Confidence 22333 4566779999999999985 222222211 011012222455543 1333445543 45778877
Q ss_pred eec
Q 031223 157 NIQ 159 (163)
Q Consensus 157 H~~ 159 (163)
|+.
T Consensus 1217 HGE 1219 (1320)
T KOG1907|consen 1217 HGE 1219 (1320)
T ss_pred ecc
Confidence 875
No 142
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=95.95 E-value=0.11 Score=40.02 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=58.1
Q ss_pred HHHHHH-HcCCEEEEEeC-CCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHH-------HH
Q 031223 40 LCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QC 109 (163)
Q Consensus 40 ~~~~l~-~~G~~~~v~~~-~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~-------Ql 109 (163)
+.+.|+ ..|+++++... +..+.+.++ ++|.||+....+... .+...+.+++ ++++++++||..++ .-
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~l-~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~ 100 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDEL-TDEQRAALRDYVENGGGLVGLHGAATDSFPDWPE 100 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCGS--HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT-HH
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCcC-CHHHHHHHHHHHHcCCCEEEEcccccccchhHHH
Confidence 556666 46777776542 112233343 899999877653222 2233455555 57899999998444 22
Q ss_pred HHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEe
Q 031223 110 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSIS 154 (163)
Q Consensus 110 La~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~ 154 (163)
....+||.....+ . .+.. .+...+ .++|+.+++|+.|.+.
T Consensus 101 ~~~l~Gg~f~~h~-~--~~~~-~v~~~~-~~HPi~~gl~~~f~~~ 140 (217)
T PF06283_consen 101 YNELLGGYFKGHP-P--PQPF-TVRVED-PDHPITRGLPESFTIY 140 (217)
T ss_dssp HHHHHS--SEEEE-C--EEEE-EEEESS-TTSCCCTTS-SEEEEE
T ss_pred HHHeeCccccCCC-C--CceE-EEEEcC-CCChhhcCCCCCceEc
Confidence 4446787654433 1 1222 344443 3799999998877663
No 143
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.70 E-value=0.11 Score=42.47 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=48.9
Q ss_pred eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC---------------CHHHHhccCCCEEEeCCCCCCCCCCh
Q 031223 26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dgvvl~GG~~~~~d~~ 85 (163)
+|+|+-+... ....+.+||++.|+++.+-..... +.+++. .++|.+|..||-+
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG------ 79 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG------ 79 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH------
Confidence 4888865433 233477889899998876532100 011221 2589999999954
Q ss_pred hHHHHHHHh-CCCCCEEEEehHH
Q 031223 86 ISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
.+....+.+ ..++|+|||=.|.
T Consensus 80 T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred HHHHHHHHhcccCCCEEEEecCC
Confidence 356666665 5689999999986
No 144
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=95.60 E-value=0.14 Score=38.66 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=45.8
Q ss_pred CeEEEE-ECCCChHHHHHHHHHH-c--CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CCChhHHHHHHHh---CC
Q 031223 25 NPIIVI-DNYDSFTYNLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLEL---GP 96 (163)
Q Consensus 25 ~~Ilvi-d~~~~~~~~~~~~l~~-~--G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d~~~~~~~i~~~---~~ 96 (163)
|+++|+ .-..+.+..+++++.+ + |.++++++..+....++. +||.||| |+|--. .....+.+++.+. -+
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~ 77 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQLN 77 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHHhC
Confidence 456676 3344567777666644 2 667888775432222333 7999888 554321 2223445555442 36
Q ss_pred CCCEEEEehHH
Q 031223 97 TVPLFGVCMGL 107 (163)
Q Consensus 97 ~~PvLGIC~G~ 107 (163)
++|+.-.|-|+
T Consensus 78 ~K~v~~F~v~l 88 (177)
T PRK11104 78 QMPSAFFSVNL 88 (177)
T ss_pred CCeEEEEEech
Confidence 78888888773
No 145
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=95.52 E-value=0.085 Score=42.08 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=66.2
Q ss_pred CChhhHhhHHhhhcCCCCCeEEEEECCCC----hHHHHHHHHHHcCC-EEEEEeCCCC----CHHHHhc-cCCCEEEeCC
Q 031223 7 VPISKSLYLDDKKSKNNKNPIIVIDNYDS----FTYNLCQYMGELGY-HFEVYRNDEL----TVEELKR-KNPRGVLISP 76 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~----~~~~~~~~l~~~G~-~~~v~~~~~~----~~~~~~~-~~~dgvvl~G 76 (163)
+...|+.|++..... ..||++|-..+. +...+.++++.+|+ .+.++..+.. +.+.+.. .+.|+|+++|
T Consensus 13 ~~~i~~~~~~lag~~--~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 13 DREILREFVSRAGGE--DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred hHHHHHHHHHHhCCC--CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence 445777787666443 368999964333 23456778888998 4666654211 1111111 3799999999
Q ss_pred CCCCC----CCChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 77 GPGAP----QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 77 G~~~~----~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
|.... .....+.+.|++ +.++.|+.|.--|+-+|+..
T Consensus 91 Gnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 91 GDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 95321 111234566766 57889999999999888654
No 146
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.52 E-value=0.076 Score=43.01 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=50.0
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC--C------HHHHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL--T------VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~--~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
|||+|+-+.+. ....+.++|++.|+++.+...... . ...+...++|.+|..||-+ .+.+.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHH
Confidence 57888866443 233477788899999887632100 0 0122223689999999954 355666
Q ss_pred HHhCCCCCEEEEehHH
Q 031223 92 LELGPTVPLFGVCMGL 107 (163)
Q Consensus 92 ~~~~~~~PvLGIC~G~ 107 (163)
+....++|++||=.|.
T Consensus 75 ~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 75 HKTKKDIPILGINMGT 90 (277)
T ss_pred HhcCCCCeEEEEeCCC
Confidence 6335689999999986
No 147
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=95.46 E-value=0.07 Score=41.64 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCeEEEEECC------CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCC-----hhHHHH
Q 031223 24 KNPIIVIDNY------DSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS-----GISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~~------~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~-----~~~~~~ 90 (163)
..+|++|-.. +.|.....++|+++|+.+.-++....+.+++.. .+.|.|.+.||. ..+-. --+.++
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke~gld~i 110 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKETGLDDI 110 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHHhCcHHH
Confidence 5589999221 225666788999999998877765456667653 368999998873 21100 113677
Q ss_pred HHH-hCCCCCEEEEehHH
Q 031223 91 VLE-LGPTVPLFGVCMGL 107 (163)
Q Consensus 91 i~~-~~~~~PvLGIC~G~ 107 (163)
|++ +.+++|..|+--|+
T Consensus 111 Ir~~vk~G~~YiG~SAGA 128 (224)
T COG3340 111 IRERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHHHcCCceEEeccCc
Confidence 777 68999999988765
No 148
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=95.44 E-value=0.11 Score=42.47 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=49.3
Q ss_pred eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC----------CHHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~----------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
+|+|+-+... ....+.++|++.|+++.+...... +.+++ ..++|.+|..||-+ .+...
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~ 79 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDG------TMLGI 79 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcH------HHHHH
Confidence 4888866443 134577888889988766432100 11222 12589999999954 36677
Q ss_pred HHHh-CCCCCEEEEehHH
Q 031223 91 VLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 91 i~~~-~~~~PvLGIC~G~ 107 (163)
++.+ ..++|+|||=.|.
T Consensus 80 ~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 80 GRQLAPYGVPLIGINHGR 97 (291)
T ss_pred HHHhcCCCCCEEEEcCCC
Confidence 7775 5789999999886
No 149
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=95.33 E-value=0.17 Score=39.42 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=65.2
Q ss_pred CChhhHhhHHhhhcCCCCCeEEEEECCC----ChHHHHHHHHHHcCCE-EEEEeCCC----CCHHHHhc-cCCCEEEeCC
Q 031223 7 VPISKSLYLDDKKSKNNKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE----LTVEELKR-KNPRGVLISP 76 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~----~~~~~~~~~l~~~G~~-~~v~~~~~----~~~~~~~~-~~~dgvvl~G 76 (163)
+...++.+++... +.+.+|++|...+ .+...+.++++++|+. +.++..+. .+.+-... .+.|+|+++|
T Consensus 14 ~~~i~~~~~~~ag--~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~G 91 (217)
T cd03145 14 NRAILQRFVARAG--GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTG 91 (217)
T ss_pred HHHHHHHHHHHcC--CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeC
Confidence 3445555555543 3567899997654 3455677888889985 45543321 11111111 3799999999
Q ss_pred CCCCCC----CChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 77 GPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 77 G~~~~~----d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
|..... ....+.+.|++ ++++.|+.|.--|+-+++..
T Consensus 92 G~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 92 GDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred CcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 843211 11134566666 57899999999999888765
No 150
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.29 E-value=0.12 Score=42.21 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=49.3
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC----------------CHHHHhccCCCEEEeCCCCCCCCC
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQD 83 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~----------------~~~~~~~~~~dgvvl~GG~~~~~d 83 (163)
|+|.|+-+... ....+.++|++.|+++.+-+.... +.+++. .++|.+|..||-+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG---- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG---- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcH----
Confidence 56888855433 234577788889998876532100 011221 2589999999954
Q ss_pred ChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 84 SGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
.+....+.+ ..++|+|||=.|.
T Consensus 76 --T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 76 --TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred --HHHHHHHHhcCCCCCEEEEecCC
Confidence 356666765 5689999999886
No 151
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.20 E-value=0.16 Score=41.72 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=49.7
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCCCH-------------------HHHhccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELTV-------------------EELKRKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~~~-------------------~~~~~~~~dgvvl~GG~~~ 80 (163)
++|+|+-+... ....+.++|++.|+++.+........ +++ ..++|.+|..||-+
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG- 83 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG- 83 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH-
Confidence 45999866433 23457788989999887754211000 111 12589999999954
Q ss_pred CCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 81 PQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
.+....+.+ ..++|+|||=.|.
T Consensus 84 -----T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 84 -----TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred -----HHHHHHHHhccCCCcEEEEecCC
Confidence 356666664 5789999999884
No 152
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.17 E-value=0.14 Score=41.78 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=48.8
Q ss_pred eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC----------CHHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~----------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
+|+|+-+... ....+.+||++.|+++.+-..... +.+++ ..++|.+|..||-+ .+...
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDG------T~L~a 79 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDG------NMLGA 79 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcH------HHHHH
Confidence 4888866433 133577889889988876432100 01111 12589999999954 35666
Q ss_pred HHHh-CCCCCEEEEehHH
Q 031223 91 VLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 91 i~~~-~~~~PvLGIC~G~ 107 (163)
.+.+ ..++|++||-.|.
T Consensus 80 a~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 80 ARVLARYDIKVIGINRGN 97 (292)
T ss_pred HHHhcCCCCeEEEEECCC
Confidence 6665 4579999999998
No 153
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=95.04 E-value=0.021 Score=41.81 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=48.1
Q ss_pred cCCCCCeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCCCCHHH----------------HhccCCCEEEeCCCCCC
Q 031223 20 SKNNKNPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDELTVEE----------------LKRKNPRGVLISPGPGA 80 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~----------------~~~~~~dgvvl~GG~~~ 80 (163)
+.+...+|+.+-.-+- |...+...+|+.+.+-..+|..+ .++ ....++|.|||.||-..
T Consensus 15 ~~~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d--~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAM 92 (147)
T PF09897_consen 15 GLKDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDAD--LEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAM 92 (147)
T ss_dssp --TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT---GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGS
T ss_pred cccCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCC--hhhhheeeccCcccccccccCCCCCCEEEEEccccc
Confidence 4445568999976544 34456667787777776666532 111 11225899999999666
Q ss_pred CC---CChhHHHHHHHhCCCCCEEEEeh
Q 031223 81 PQ---DSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 81 ~~---d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
|. +.++..+.+.++.. +.+.|||+
T Consensus 93 P~~~v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 93 PKSGVTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp TTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence 65 34556777777632 33999996
No 154
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=94.99 E-value=0.42 Score=35.02 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----c--c--CCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--K--NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~--~--~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (163)
++++...+.++|++.|+++..+..-..+.+++. . . ++|.||.+||. ++.+.+...+.++++ ++..|
T Consensus 18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~-s~g~~D~t~~al~~~~~~~l~ 92 (152)
T cd00886 18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGT-GLAPRDVTPEATRPLLDKELP 92 (152)
T ss_pred ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-CCCCCcCcHHHHHHHhCCcCc
Confidence 455677788999999988765432111233321 1 2 69999999984 445444455666664 43333
No 155
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.35 E-value=0.26 Score=43.83 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=58.8
Q ss_pred CCChhhHhhHHhhhcCC--CCCeEEEEECCCC-h----HHHHHHHHHHcCCEEEEEeCCCCCHH----H----H-hccCC
Q 031223 6 AVPISKSLYLDDKKSKN--NKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----E----L-KRKNP 69 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~Ilvid~~~~-~----~~~~~~~l~~~G~~~~v~~~~~~~~~----~----~-~~~~~ 69 (163)
+++.-++.+++.++..- ..++|.|+-+... . ...+.++|++.|+++.+-+....... + . ...++
T Consensus 270 a~~~l~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (569)
T PRK14076 270 SNEILHKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEI 349 (569)
T ss_pred ECHHHHHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCC
Confidence 45666666666663322 2257999866433 1 33477788888988776532100000 0 0 01257
Q ss_pred CEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 70 RGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 70 dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
|.+|..||-+ .+....+.+ ..++|||||=.|.
T Consensus 350 dlvi~lGGDG------T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 350 SHIISIGGDG------TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred CEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 9999999954 356666765 4689999999885
No 156
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.34 E-value=0.46 Score=35.74 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=39.5
Q ss_pred cCCCEEEeCCCCCCCCCC-------------hhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCee
Q 031223 67 KNPRGVLISPGPGAPQDS-------------GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKI 118 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~~d~-------------~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v 118 (163)
..+|++|++||.+..... +++..+.+.+ +++||+-=||..--|+...||.-+
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 478999999998865321 1234555554 688999999999999999998644
No 157
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=94.32 E-value=0.11 Score=43.81 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=49.8
Q ss_pred CeEEEEECCCChHH---HHHHHHHH-cCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCCCC---hhHHHHHHH
Q 031223 25 NPIIVIDNYDSFTY---NLCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTVLE 93 (163)
Q Consensus 25 ~~Ilvid~~~~~~~---~~~~~l~~-~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~d~---~~~~~~i~~ 93 (163)
|+|+|-+-.+.... .....|+. +.-.+.|...+ ...+. ..+++.+|++||.+.++.. +.-.+.||+
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~---~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~ 77 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVT---ADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQ 77 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeC---HHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHH
Confidence 46777643333333 34455554 22233343322 23332 1368999999998765532 223667788
Q ss_pred h-CCCCCEEEEehHHHHHHH
Q 031223 94 L-GPTVPLFGVCMGLQCIGE 112 (163)
Q Consensus 94 ~-~~~~PvLGIC~G~QlLa~ 112 (163)
+ .++.-.||||.|.-.-..
T Consensus 78 fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 78 FVENGGGYLGICAGAYYASS 97 (367)
T ss_pred HHHcCCcEEEECcchhhhcc
Confidence 5 678999999999866554
No 158
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.89 E-value=0.14 Score=36.94 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCCEEEeCCCCCCCC---CChhHHHHHHHhCCCCCEEEEeh
Q 031223 68 NPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~---d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
..|.||+.||-..|. +.++..+++.+. .++|+.|+|+
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~-~~kkliGvCf 124 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEEL-GNKKLIGVCF 124 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhc-CCCceEEeeH
Confidence 489999999977665 334566666665 3469999995
No 159
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.75 E-value=0.46 Score=39.10 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=48.4
Q ss_pred eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC-------------------CHHHHhccCCCEEEeCCCCCCC
Q 031223 26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGAP 81 (163)
Q Consensus 26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~-------------------~~~~~~~~~~dgvvl~GG~~~~ 81 (163)
+|.|+-+.+. ....+.++|++.|+++.+...... ...++ ..++|.+|..||-+
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDG-- 79 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGGDG-- 79 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc-ccCcCEEEEEeCcH--
Confidence 4888866433 234577888899998876532100 01111 12589999999954
Q ss_pred CCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 82 QDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
.+....+.+ ..++|+|||-.|.
T Consensus 80 ----TlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 80 ----TVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred ----HHHHHHHHhcCCCCcEEEEeCCC
Confidence 356667765 5789999998873
No 160
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=93.51 E-value=1.1 Score=33.43 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHcCCEEEEEeCCCCCHHH----Hh----ccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK----RKNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~----~~----~~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
.+++...+..+|++.|+++..+..-..+.+. +. ..++|.||.+||.+ +.+.+...+.+++
T Consensus 20 ~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg-~g~~D~t~eal~~ 87 (163)
T TIGR02667 20 DDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG-FTGRDVTPEALEP 87 (163)
T ss_pred CCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCCCcHHHHHH
Confidence 3456667889999999987654321112222 21 13699999999954 3333333344444
No 161
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=93.35 E-value=0.33 Score=36.30 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=47.8
Q ss_pred CeEEEEE-CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh---CC
Q 031223 25 NPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL---GP 96 (163)
Q Consensus 25 ~~Ilvid-~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~---~~ 96 (163)
||+||+- -.++.+.. ++..|++.|+++++.+..+ ..++...+||+|||.-+...-.....+...+++. -+
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~--~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~ 78 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHA--VEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALS 78 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhh--hhccChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHh
Confidence 4677772 23345554 5556788999999987542 3333345899999933321111222344455442 36
Q ss_pred CCCEEEEehHH
Q 031223 97 TVPLFGVCMGL 107 (163)
Q Consensus 97 ~~PvLGIC~G~ 107 (163)
.+|..-+|.+.
T Consensus 79 ~kP~A~f~vnl 89 (175)
T COG4635 79 TKPSAFFSVNL 89 (175)
T ss_pred cCCceEEEeeh
Confidence 78888888764
No 162
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=93.32 E-value=0.19 Score=33.60 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=49.6
Q ss_pred EEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
|+|+|........+.++|+..|+ .+............+....||.+++.-.... .+...+.+.+++...+.|++.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 68898866677788899998898 6665532111123334457998888543211 23334566667656789999988
No 163
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.29 E-value=0.54 Score=38.43 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=48.1
Q ss_pred eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC-------C---HHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------T---VEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~-------~---~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
+|.|+-+... ....+.++|++.|+++.+...... . ..++ ...+|.+|..||-+ .+...
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~ 78 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDG------SLLGA 78 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcH------HHHHH
Confidence 5888866433 233477788889998877542110 0 0111 12589999999954 35555
Q ss_pred HHHh-CCCCCEEEEehHH
Q 031223 91 VLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 91 i~~~-~~~~PvLGIC~G~ 107 (163)
.+.+ ..++|++||=.|.
T Consensus 79 ~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 79 ARALARHNVPVLGINRGR 96 (295)
T ss_pred HHHhcCCCCCEEEEeCCc
Confidence 6665 5789999999885
No 164
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.21 E-value=0.63 Score=37.91 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=49.2
Q ss_pred CeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC-------CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 25 ~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~-------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
++|.|+-+.... ...+.++|++.|+++.+-+.... ..+++. .++|.+|..||-+ .+....+.
T Consensus 11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------T~L~aa~~ 83 (287)
T PRK14077 11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDG------TLISLCRK 83 (287)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCH------HHHHHHHH
Confidence 358888664332 23467788888988876542100 011221 2689999999954 35666676
Q ss_pred h-CCCCCEEEEehHH
Q 031223 94 L-GPTVPLFGVCMGL 107 (163)
Q Consensus 94 ~-~~~~PvLGIC~G~ 107 (163)
+ ..++|+|||=.|.
T Consensus 84 ~~~~~~PilGIN~G~ 98 (287)
T PRK14077 84 AAEYDKFVLGIHAGH 98 (287)
T ss_pred hcCCCCcEEEEeCCC
Confidence 5 5689999999997
No 165
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.14 E-value=0.072 Score=39.05 Aligned_cols=73 Identities=8% Similarity=0.127 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCC----CChhHHHHHHH-hCCCCCEEEEehHHHH
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQC 109 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~----d~~~~~~~i~~-~~~~~PvLGIC~G~Ql 109 (163)
...+.++++++|+++..++....+.++... .+.|+|+++||.-... ....+.+.|++ +.+++|+.|.--|+-+
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhh
Confidence 456778999999998888754322233221 3799999999832110 01124667777 4778999999999855
No 166
>PLN02929 NADH kinase
Probab=93.09 E-value=0.35 Score=39.71 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehH
Q 031223 36 FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (163)
Q Consensus 36 ~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G 106 (163)
....+.++|++.|+++..+.-. ...+. ..++|.+|..||-+ .+....+.+..++||+||=.|
T Consensus 35 ~~~~~~~~L~~~gi~~~~v~r~--~~~~~-~~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 35 TVNFCKDILQQKSVDWECVLRN--ELSQP-IRDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHHHcCCEEEEeecc--ccccc-cCCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence 3456788999999988655322 11111 13789999999954 355555656677999999998
No 167
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.18 E-value=0.86 Score=36.46 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=45.4
Q ss_pred CeEEEEECCCC--hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 25 NPIIVIDNYDS--FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 25 ~~Ilvid~~~~--~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
|++.|+...++ ....+.++|.+.|..+...... . . ...++|.+|..||-+ .+....+.+ ++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDG------TVLKAAKKV--GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcH------HHHHHHHHc--CCCEEE
Confidence 46777754433 2445777888888765543211 1 1 123789999999954 355566666 799999
Q ss_pred EehHH
Q 031223 103 VCMGL 107 (163)
Q Consensus 103 IC~G~ 107 (163)
|-.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 99885
No 168
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.17 E-value=0.97 Score=37.10 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=46.7
Q ss_pred CeEEEEECCCC-h----HHHHHHHHHHcCCEEEEEeCCCC--CHH---HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 25 ~~Ilvid~~~~-~----~~~~~~~l~~~G~~~~v~~~~~~--~~~---~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
+++++|-+-+. . ...+.++|++.|+++.+...... ... ......+|.+|..||-+ .+...++.+
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~~~~~~ 77 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------TVLAAARHL 77 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------HHHHHHHHh
Confidence 35888755332 2 22466778889998877543211 000 11123589999999954 355666665
Q ss_pred -CCCCCEEEEeh
Q 031223 95 -GPTVPLFGVCM 105 (163)
Q Consensus 95 -~~~~PvLGIC~ 105 (163)
..++|++||=.
T Consensus 78 ~~~~~pv~gin~ 89 (305)
T PRK02645 78 APHDIPILSVNV 89 (305)
T ss_pred ccCCCCEEEEec
Confidence 56899999998
No 169
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=91.48 E-value=1.4 Score=35.52 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCCCCeEEEEECCCC--------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeC
Q 031223 21 KNNKNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~--------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~ 75 (163)
++|+++|+|+-.+.+ -...+.++|++.|+++.++..+......+...++|.++..
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 467778999853322 1245889999999999988765333333434579998874
No 170
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.48 E-value=0.81 Score=36.87 Aligned_cols=64 Identities=28% Similarity=0.434 Sum_probs=42.1
Q ss_pred CeEEEEECCCChHH----HHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC---CC
Q 031223 25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PT 97 (163)
Q Consensus 25 ~~Ilvid~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~---~~ 97 (163)
|+|.|+-+...... .+.++|++.|+++ + ..++|.+|..||-+ .+....+.+. .+
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~--------~~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~ 61 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----D--------EKNPDIVISVGGDG------TLLSAFHRYENQLDK 61 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----C--------CcCCCEEEEECCcH------HHHHHHHHhcccCCC
Confidence 45888866332222 3556677777652 1 12579999999954 3566666653 58
Q ss_pred CCEEEEehHH
Q 031223 98 VPLFGVCMGL 107 (163)
Q Consensus 98 ~PvLGIC~G~ 107 (163)
+|++||=.|.
T Consensus 62 iPilGIN~G~ 71 (265)
T PRK04885 62 VRFVGVHTGH 71 (265)
T ss_pred CeEEEEeCCC
Confidence 9999999885
No 171
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.91 E-value=0.85 Score=36.91 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCEEEEEeCCCC----------CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223 38 YNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~----------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G 106 (163)
..+.+||++.|+++.+-+.... +.+++. .++|.+|..||-+ .+....+.+ ..++|+|||=.|
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence 3577889899988876542100 112222 2589999999954 356666665 568999999988
No 172
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=90.50 E-value=1.5 Score=31.18 Aligned_cols=65 Identities=28% Similarity=0.462 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCC-H-HHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~-~-~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (163)
+++...+..+|++.|+++.... .|+.. . +.+.. .++|.||.+||.+ +...+...+.++++ ...++
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~~~~~~~ 88 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEALGKELP 88 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHHhCCcCC
Confidence 4566678899999998765332 23211 1 11211 3699999999965 44444455666664 43344
No 173
>PRK05569 flavodoxin; Provisional
Probab=90.36 E-value=4.9 Score=28.46 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=43.4
Q ss_pred eEEEEEC-CCChHHHHHHHHH----HcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CC--hhHHHHHHHh---
Q 031223 26 PIIVIDN-YDSFTYNLCQYMG----ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DS--GISLQTVLEL--- 94 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~~~~~l~----~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~--~~~~~~i~~~--- 94 (163)
+|+|+-+ ..+++..+++++. +.|+++++.+....+..++. ++|+|+| |.|---. .. ..+..++.++
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsPty~~~~~~~~~~~~~~~~l~~~ 79 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPSMDNNNIEQEEMAPFLDQFKLT 79 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECCCcCCCcCChHHHHHHHHHhhcc
Confidence 5666633 3446776666554 46888888876544445554 7999998 6653111 11 2344445443
Q ss_pred C-CCCCEEEEe
Q 031223 95 G-PTVPLFGVC 104 (163)
Q Consensus 95 ~-~~~PvLGIC 104 (163)
. +++++.-+|
T Consensus 80 ~~~~K~v~~f~ 90 (141)
T PRK05569 80 PNENKKCILFG 90 (141)
T ss_pred CcCCCEEEEEe
Confidence 2 567776555
No 174
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=89.84 E-value=2.3 Score=37.21 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=59.9
Q ss_pred hHhhHHhh----hcCCCCCeEEEEECCCChHHH-HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-
Q 031223 11 KSLYLDDK----KSKNNKNPIIVIDNYDSFTYN-LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS- 84 (163)
Q Consensus 11 ~~~~~~~~----~~~~~~~~Ilvid~~~~~~~~-~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~- 84 (163)
|+..|+.+ ++.+...|+.|||....+.+. +.+.|.+.|+++..+.... ..-+- .+.+-|++ |+. +....
T Consensus 368 ~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a--~syim-~evtkvfL-Gah-ailsNG 442 (556)
T KOG1467|consen 368 SSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA--ASYIM-LEVTKVFL-GAH-AILSNG 442 (556)
T ss_pred chHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh--HHHHH-Hhcceeee-chh-hhhcCc
Confidence 56666666 888889999999998877664 8899999999998776432 22222 24555555 552 22111
Q ss_pred ------hh-HHHHHHHhCCCCCEEEEehHHHHH
Q 031223 85 ------GI-SLQTVLELGPTVPLFGVCMGLQCI 110 (163)
Q Consensus 85 ------~~-~~~~i~~~~~~~PvLGIC~G~QlL 110 (163)
+. ...++.. ..++|||-.|--+-..
T Consensus 443 ~vysR~GTa~valvAn-a~nVPVlVCCE~yKF~ 474 (556)
T KOG1467|consen 443 AVYSRVGTACVALVAN-AFNVPVLVCCEAYKFH 474 (556)
T ss_pred chhhhcchHHHHHHhc-ccCCCEEEEechhhhh
Confidence 21 2223222 4679999999765443
No 175
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=89.74 E-value=0.75 Score=38.24 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCCEEEeCCCCCCCCCC--hhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAPQDS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~--~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+|-+++.+|....... ..+.+++++. .++.++.|||-|.-+||++
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 47888886764433322 4578899984 7899999999999999997
No 176
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=89.64 E-value=2.1 Score=36.68 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h--ccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~--~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
+++...+...|++.|+++..+..-..+.+.+ . ..++|.||.+|| .++.+.+-+.+.++
T Consensus 202 dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG-~SvG~~D~v~~~l~ 265 (404)
T COG0303 202 DSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGG-VSVGDADYVKAALE 265 (404)
T ss_pred ecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCC-ccCcchHhHHHHHH
Confidence 4556678889999999776554211122332 2 136999999999 45666665666666
No 177
>PRK01215 competence damage-inducible protein A; Provisional
Probab=89.45 E-value=3.2 Score=33.38 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh------ccCCCEEEeCCCCC
Q 031223 35 SFTYNLCQYMGELGYHFEVYR--NDELTVEELK------RKNPRGVLISPGPG 79 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~------~~~~dgvvl~GG~~ 79 (163)
++...+.++|.+.|+++.... .|+ .+.+. ..++|.||++||-+
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRITVVMDD--IEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 455568899999999876432 232 23221 13689999999954
No 178
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=89.44 E-value=0.69 Score=32.06 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=44.3
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH-hccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~-~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
||+|||....-.+.+.-.|...|.+++.+...+ .... .....+++++..|... ......+.+.+.....|++=+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~--~~~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD--WSQADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH--HHHhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 699999765566678888888999998886431 1111 1235677766555333 111223333333567898754
No 179
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=89.42 E-value=3 Score=31.66 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=47.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
...+|++++........+...|...|+.+..........+.+....+|.+|+--.. +... -.....+++.....|++
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~~~~~pii 81 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLML--PGEDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCCCCEE
Confidence 44689999886666777888898899887755321111122223468988873221 1112 12344455433568999
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-++-
T Consensus 82 ~ls~ 85 (239)
T PRK09468 82 MLTA 85 (239)
T ss_pred EEEC
Confidence 8864
No 180
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=89.41 E-value=2.3 Score=31.82 Aligned_cols=79 Identities=10% Similarity=0.163 Sum_probs=45.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
|+|+++|........+...|+..|+.+............+....+|.+++--. .+... -...+.+++.....|++-+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999998666677788889889987765432111112223346898887322 11111 1233444443356898877
Q ss_pred eh
Q 031223 104 CM 105 (163)
Q Consensus 104 C~ 105 (163)
.-
T Consensus 79 s~ 80 (223)
T PRK10816 79 TA 80 (223)
T ss_pred Ec
Confidence 53
No 181
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.31 E-value=2 Score=34.69 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=42.1
Q ss_pred CeEEEEECCCC-h----HHHHHHHHHHcCCEEEEEeCCCCCHH----HHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC
Q 031223 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELG 95 (163)
Q Consensus 25 ~~Ilvid~~~~-~----~~~~~~~l~~~G~~~~v~~~~~~~~~----~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~ 95 (163)
|+|.|+-+... . ...+.++| +.|+++.+-........ +....++|.+|..||-+. +....+.+.
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~ 73 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK 73 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC
Confidence 46888855433 2 23466677 46877665431100000 111126899999999543 445555544
Q ss_pred CCCCEEEEehH
Q 031223 96 PTVPLFGVCMG 106 (163)
Q Consensus 96 ~~~PvLGIC~G 106 (163)
.|++||=.|
T Consensus 74 --~PilGIN~G 82 (271)
T PRK01185 74 --GPILGINMG 82 (271)
T ss_pred --CCEEEEECC
Confidence 699999998
No 182
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=89.08 E-value=7.8 Score=28.97 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCC-H-HHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehH
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 106 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~-~-~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G 106 (163)
+++...+.++|++.|+++.... .|+.. . +.+. ..++|.||.+||-+ +...+...+.+++ ++ +|+.+.=--
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G-~t~~D~t~ea~~~~~~--~~l~~~~e~ 94 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG-PTHDDLTREAVAKAFG--RPLVLDEEA 94 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCChHHHHHHHHhC--CCcccCHHH
Confidence 3456678899999999865332 22111 1 1121 13789999999954 4444445556665 34 566666566
Q ss_pred HHHHHHHhCC
Q 031223 107 LQCIGEAFGG 116 (163)
Q Consensus 107 ~QlLa~a~Gg 116 (163)
.+.|-..+..
T Consensus 95 ~~~i~~~~~~ 104 (170)
T cd00885 95 LERIEARFAR 104 (170)
T ss_pred HHHHHHHHHh
Confidence 6666665553
No 183
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=88.68 E-value=3.6 Score=30.57 Aligned_cols=80 Identities=14% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
.++|+++|....+...+...|...|+.+............+....+|.+++--... ..+.-...+.+++.....|++-+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~-~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLP-DISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCCEEEE
Confidence 36899999866567778888888888765443211112223334689887732211 11111234444544456888877
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
+
T Consensus 82 s 82 (228)
T PRK11083 82 T 82 (228)
T ss_pred E
Confidence 5
No 184
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=88.54 E-value=4.8 Score=31.71 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhCCeeee
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (163)
.+|++|| ....| ...+.+|+. ..+|+.|||--.-..|...|-++.-
T Consensus 69 GvdaiiI----aCf~D--Pgl~~~Re~-~~~PviGi~eAsv~~A~~vgrrfsV 114 (230)
T COG4126 69 GVDAIII----ACFSD--PGLAAARER-AAIPVIGICEASVLAALFVGRRFSV 114 (230)
T ss_pred CCcEEEE----EecCC--hHHHHHHHH-hCCCceehhHHHHHHHHHhcceEEE
Confidence 5899998 23333 345677774 2399999999998889888877654
No 185
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=88.39 E-value=3.2 Score=29.51 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
+++...+.++|++.|+++.....-..+.+.+ .. .++|.||.+||-+ +...+...+.++++
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g-~g~~D~t~~ai~~~ 83 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG-VGRRDVTPEALAEL 83 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC-CCCCcchHHHHHHh
Confidence 4566678889999998876543211122222 11 2599999999954 44444455666664
No 186
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=88.16 E-value=2.7 Score=32.27 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHcCCE---E--EEEeCCCCCH-HHHh---c-cCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCC
Q 031223 35 SFTYNLCQYMGELGYH---F--EVYRNDELTV-EELK---R-KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 99 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~---~--~v~~~~~~~~-~~~~---~-~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~P 99 (163)
++...+..+|++.|++ + .+++.+...+ +.+. . .++|.||.+||.+ +.+.+...+.+++ +++.+|
T Consensus 23 ~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg-~g~rDvTpeAv~~l~~keip 97 (193)
T PRK09417 23 KGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG-PARRDVTPEATLAVADKEMP 97 (193)
T ss_pred chHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC-CCCCCcHHHHHHHHhCCcCC
Confidence 3455688899998643 2 2333221111 1121 1 2699999999954 4444444556666 354455
No 187
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=87.94 E-value=3.2 Score=29.97 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
++...+.+.|++.|+++..+..-..+.+++. . .++|.||.+||.+ +.+.+...+.++++
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g-~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG-VGPRDVTPEALEEL 91 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCccHHHHHHHh
Confidence 5666788999999998775432111223221 1 3799999999954 44444455566654
No 188
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=87.81 E-value=11 Score=29.35 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCC----CHHHHhccCCCEEEeCCCCC-CCCCChhHHHHHHHhCCCCCEEEEehHHH
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPG-APQDSGISLQTVLELGPTVPLFGVCMGLQ 108 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~----~~~~~~~~~~dgvvl~GG~~-~~~d~~~~~~~i~~~~~~~PvLGIC~G~Q 108 (163)
++....+...|++.|+++++...++. +.+.+. ++|.||+.+-.. +.-.......+.+.+.++.=++|+=-|+-
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~--~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHsg~~ 99 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLA--ETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHSGHY 99 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHh--cCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 34566788999999999885544321 122343 899999843222 21222223333344577888888766552
Q ss_pred H--HHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEE
Q 031223 109 C--IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSI 153 (163)
Q Consensus 109 l--La~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v 153 (163)
- ...-.||.-.... ...+....+.+... ++|+.+|+|+.|..
T Consensus 100 s~~y~~lvGg~f~~~~--h~~~~~~~v~v~~p-~HPIt~Gl~~~f~~ 143 (215)
T cd03142 100 SKIFKKLMGTTCTLKW--REAGERERVWVVEP-GHPITDGIPEYIEL 143 (215)
T ss_pred CHHHHHhhCCccccee--cCCCceeEEEEecC-CCchhcCCCCcccc
Confidence 1 1122566531110 01122223443332 68999999886654
No 189
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=87.59 E-value=3.6 Score=30.35 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=56.9
Q ss_pred CChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC--
Q 031223 7 VPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-- 84 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-- 84 (163)
+....+.+++..-+.=..-.+++||.+ +....+.++|.... .+.++.+...-...+....---++++||.-.+...
T Consensus 2 n~~~K~~IA~~A~~~I~~~~~Ifld~G-tT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~ 79 (161)
T PF00455_consen 2 NAEEKRAIARKAASLIEDGDTIFLDSG-TTTLELAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSF 79 (161)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEECc-hHHHHHHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcE
Confidence 344556666666444444558899975 56667888888763 55566554111233332222346677885544332
Q ss_pred --hhHHHHHHHhCCCCCEEEEe
Q 031223 85 --GISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 85 --~~~~~~i~~~~~~~PvLGIC 104 (163)
....+.++++.-++-++|+|
T Consensus 80 ~G~~a~~~l~~~~~d~afi~~~ 101 (161)
T PF00455_consen 80 VGPIALEALRQFRFDKAFIGAD 101 (161)
T ss_pred ECchHHHHHHhhccceEEeccc
Confidence 23567778876668888766
No 190
>PRK05568 flavodoxin; Provisional
Probab=87.34 E-value=8.3 Score=27.24 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=43.6
Q ss_pred eEEEE-ECCCChHHHHHHHH----HHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC---ChhHHHHHHHh---
Q 031223 26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLEL--- 94 (163)
Q Consensus 26 ~Ilvi-d~~~~~~~~~~~~l----~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d---~~~~~~~i~~~--- 94 (163)
+++|+ .-..+++..+++++ ++.|+++++++..+.+..++. ++|+||+ |.|--... ...+..++.++
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp~y~~~~~~~~~~~~f~~~~~~~ 79 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSPAMGDEVLEEGEMEPFVESISSL 79 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECCccCcccccchhHHHHHHHhhhh
Confidence 35555 33445777766655 446888888876544444554 7999998 55531111 12344444443
Q ss_pred CCCCCEEEEeh
Q 031223 95 GPTVPLFGVCM 105 (163)
Q Consensus 95 ~~~~PvLGIC~ 105 (163)
.+++++.-+|-
T Consensus 80 ~~~k~~~~f~t 90 (142)
T PRK05568 80 VKGKKLVLFGS 90 (142)
T ss_pred hCCCEEEEEEc
Confidence 25677666554
No 191
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=87.18 E-value=6.7 Score=33.71 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
++...+..+|++.|+++..+..-..+.+.+ .. .++|.||++||. +..+.+...+.+
T Consensus 220 sN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~-S~G~~D~v~~~l 281 (419)
T PRK14690 220 ANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGA-SAGDEDHVSALL 281 (419)
T ss_pred CHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCc-cCCCcchHHHHH
Confidence 455568889999999876443211122322 21 369999999984 444443333333
No 192
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=87.14 E-value=4.2 Score=30.04 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=45.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
++|+++|....+...+...|...|+++............+....+|.+++--.... .+.-...+.+++.....|++-+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~lt 79 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGRDILREWREKGQREPVLILT 79 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEEE
Confidence 47999987666677788888888887755432111122233346898887432111 11112344455444568888875
No 193
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.10 E-value=1.9 Score=34.64 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=42.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
||..++.+.+.....+...|++.=-.. .. ...++|.+|..||-+ .+...++.+ ..++|++||
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~---~~--------~~~~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKK---LA--------VEDGADYLFVLGGDG------FFVSTAANYNCAGCKVVGI 63 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhC---CC--------ccCCCCEEEEECCcH------HHHHHHHHhcCCCCcEEEE
Confidence 467888877666656666665410000 00 012589999999954 356666665 578999999
Q ss_pred ehHH
Q 031223 104 CMGL 107 (163)
Q Consensus 104 C~G~ 107 (163)
=.|.
T Consensus 64 N~G~ 67 (259)
T PRK00561 64 NTGH 67 (259)
T ss_pred ecCC
Confidence 9874
No 194
>PRK15029 arginine decarboxylase; Provisional
Probab=86.80 E-value=4 Score=37.71 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=46.4
Q ss_pred CeEEEEECCCC--------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCCh-----hHHHH
Q 031223 25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT 90 (163)
Q Consensus 25 ~~Ilvid~~~~--------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~-----~~~~~ 90 (163)
|+|+|||.... ....+.+.|++.|+++............+.. .++|.||+-=. -+...+ ++.+.
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECC--CCCCccchhHHHHHHH
Confidence 47999976542 3667888999999998866532111223333 36999998311 111111 34455
Q ss_pred HHHhCCCCCEEEEe
Q 031223 91 VLELGPTVPLFGVC 104 (163)
Q Consensus 91 i~~~~~~~PvLGIC 104 (163)
||+...++||+-+.
T Consensus 79 IR~~~~~iPIIlLT 92 (755)
T PRK15029 79 LHERQQNVPVFLLG 92 (755)
T ss_pred HHhhCCCCCEEEEE
Confidence 55544578998775
No 195
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=86.44 E-value=5 Score=30.12 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~Pv 100 (163)
|..+|+++|........+.+.|+..|+.+..........+.+....+|.+++--.... .+.-...+.+++. ....|+
T Consensus 1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 3467999998666677788889888887764432111122233346898887332111 1212234444442 246788
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+-++
T Consensus 80 i~ls 83 (229)
T PRK10161 80 VMLT 83 (229)
T ss_pred EEEE
Confidence 8765
No 196
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=86.39 E-value=7 Score=33.50 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h--ccCCCEEEeCCCCC
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG 79 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~--~~~~dgvvl~GG~~ 79 (163)
++...+..+|++.|+++..+..-..+.+.+ . ..++|.||.+||.+
T Consensus 204 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 204 TNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 345568888999999876543211123322 1 13699999999954
No 197
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=86.25 E-value=4.1 Score=35.84 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=46.6
Q ss_pred CeEEEEECCCC-----hHHHHHHHHH-HcCCEEEEEeCCCC----------------CHHHHh--ccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMG-ELGYHFEVYRNDEL----------------TVEELK--RKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~-~~G~~~~v~~~~~~----------------~~~~~~--~~~~dgvvl~GG~~~ 80 (163)
.+|+||-+... ....+.+||+ ..|+.+.+-+.... +..++. ..++|.+|..||-+
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG- 273 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG- 273 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH-
Confidence 46888855433 2334777887 47887766432100 001111 12589999999954
Q ss_pred CCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223 81 PQDSGISLQTVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G 106 (163)
.+....+.+ ...+|||||=.|
T Consensus 274 -----TlL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 274 -----TVLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred -----HHHHHHHHhccCCCcEEEEeCC
Confidence 356666665 467999999977
No 198
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=85.84 E-value=5 Score=30.06 Aligned_cols=78 Identities=8% Similarity=0.062 Sum_probs=44.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
|+|++++........+.+.|+..|+.+..........+.+....+|.+++--.. +... -...+.+++.....|++-+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~~--~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCCCEEEE
Confidence 479999986666777888898888866544321111122223468988873221 1111 1234444543456888766
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
-
T Consensus 79 s 79 (227)
T PRK09836 79 T 79 (227)
T ss_pred E
Confidence 3
No 199
>PLN02727 NAD kinase
Probab=85.77 E-value=3.7 Score=38.74 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=48.1
Q ss_pred CCeEEEEECCCCh----HHHHHHHHHHc-CCEEEEEeCCCC-----------------CHHHHhccCCCEEEeCCCCCCC
Q 031223 24 KNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAP 81 (163)
Q Consensus 24 ~~~Ilvid~~~~~----~~~~~~~l~~~-G~~~~v~~~~~~-----------------~~~~~~~~~~dgvvl~GG~~~~ 81 (163)
..+|+||-....- ...+.+||.+. |+++.+-+.... ..+++ ..++|.+|..||-+
T Consensus 678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGGDG-- 754 (986)
T PLN02727 678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGGDG-- 754 (986)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhc-ccCCCEEEEECCcH--
Confidence 3578999554331 23478899886 887765422100 00111 12589999999954
Q ss_pred CCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 82 QDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
.+....+.+ ...+|||||=+|.
T Consensus 755 ----TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 755 ----VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred ----HHHHHHHHhcCCCCCEEEEeCCC
Confidence 356666665 5679999999884
No 200
>PRK03673 hypothetical protein; Provisional
Probab=85.37 E-value=6.1 Score=33.74 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCEEEeCCCCC
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG 79 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dgvvl~GG~~ 79 (163)
+++...+.++|.+.|+++.....-..+.+.+. ..++|.||++||-+
T Consensus 20 dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 20 DTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 35566788999999998764432111233332 13699999999965
No 201
>PRK09271 flavodoxin; Provisional
Probab=84.77 E-value=6.4 Score=28.84 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=29.1
Q ss_pred CeEEEEE-CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHH--hccCCCEEEeCCCC
Q 031223 25 NPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid-~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~--~~~~~dgvvl~GG~ 78 (163)
|+|+|+= -..+++.. +.+.|++.|+++++.........++ ...++|+|+| |.|
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vil-gt~ 60 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLL-GTW 60 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEE-ECc
Confidence 4666662 22345554 4455666788887776432222222 1236899888 443
No 202
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=84.71 E-value=4.5 Score=35.27 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
++..+|+|||-..+....+...|...|+.+.....-....+.+....+|.|++ .=. .|... -.+.+.+++...+.|+
T Consensus 2 ~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~-Di~-mp~~~Gl~ll~~i~~~~~~~pV 79 (464)
T COG2204 2 MMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLL-DIR-MPGMDGLELLKEIKSRDPDLPV 79 (464)
T ss_pred CCcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE-ecC-CCCCchHHHHHHHHhhCCCCCE
Confidence 34567999998777788899999999998877753211123333334665554 321 22222 2345556665567887
Q ss_pred EEE
Q 031223 101 FGV 103 (163)
Q Consensus 101 LGI 103 (163)
+-|
T Consensus 80 I~~ 82 (464)
T COG2204 80 IVM 82 (464)
T ss_pred EEE
Confidence 755
No 203
>PRK06756 flavodoxin; Provisional
Probab=84.66 E-value=9.6 Score=27.27 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=42.5
Q ss_pred CeEEEEE-CCCChHHHHHH----HHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCC-CCCCh-hHHHHHHHh--
Q 031223 25 NPIIVID-NYDSFTYNLCQ----YMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGA-PQDSG-ISLQTVLEL-- 94 (163)
Q Consensus 25 ~~Ilvid-~~~~~~~~~~~----~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~-~~d~~-~~~~~i~~~-- 94 (163)
++|+||= -..+.+..+++ .+++.|.++++.+.... ...++. ++|+|++ |.|-- ....+ .+.+++.++
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l~~ 78 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAMDS 78 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHHhc
Confidence 4677773 23345655554 45556888887764322 233443 7999988 54331 12222 245555442
Q ss_pred -C-CCCCEEEEeh
Q 031223 95 -G-PTVPLFGVCM 105 (163)
Q Consensus 95 -~-~~~PvLGIC~ 105 (163)
+ +++|+.-++.
T Consensus 79 ~~l~~k~~~~fgt 91 (148)
T PRK06756 79 IDLTGKKAAVFGS 91 (148)
T ss_pred CCCCCCEEEEEeC
Confidence 2 5778776655
No 204
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=84.61 E-value=11 Score=32.43 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=39.9
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhc--------------cCCCEEEeCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKR--------------KNPRGVLISPGP 78 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~--------------~~~dgvvl~GG~ 78 (163)
+...++|+|+-.+.+-...++++|.+.|+++...+..... .+++.. .++|.||+|+|-
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 3344689999998777766899999999998877543111 112210 158999999985
No 205
>PRK00549 competence damage-inducible protein A; Provisional
Probab=84.15 E-value=9.1 Score=32.80 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h--ccCCCEEEeCCCCC
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG 79 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~--~~~~dgvvl~GG~~ 79 (163)
+++...+.++|++.|+++.... .|+ .+.+ . ..++|.||++||-+
T Consensus 19 DtN~~~L~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 19 NTNAQFLSEKLAELGIDVYHQTVVGDN--PERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHhccCCCEEEECCCCC
Confidence 4456678899999998766432 231 2222 1 24799999999965
No 206
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=83.78 E-value=2.2 Score=28.17 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=31.0
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~ 80 (163)
||+|=+. ..++.++|++.|++++-+... .+. .++|++|++|-..+
T Consensus 3 kIAVE~~----Ls~v~~~L~~~GyeVv~l~~~----~~~--~~~daiVvtG~~~n 47 (80)
T PF03698_consen 3 KIAVEEG----LSNVKEALREKGYEVVDLENE----QDL--QNVDAIVVTGQDTN 47 (80)
T ss_pred eEEecCC----chHHHHHHHHCCCEEEecCCc----ccc--CCcCEEEEECCCcc
Confidence 4555432 337889999999988766432 222 37999999997554
No 207
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=83.64 E-value=8.9 Score=29.14 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=19.9
Q ss_pred CeEEEEECC-CChHHHHH----HHHHH-cCCEEEEEeC
Q 031223 25 NPIIVIDNY-DSFTYNLC----QYMGE-LGYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~~~----~~l~~-~G~~~~v~~~ 56 (163)
++|+||-.- .+.+..++ +.+++ .|+++++++.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 368888542 23555544 44555 7888888865
No 208
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=83.50 E-value=9.5 Score=28.33 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
..+|++||........+...|...|+.+............+....+|.+++.-.. +... -.+.+.+++. ...|++.
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~-~~~~ii~ 78 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINL--PGEDGLMLTRELRSR-STVGIIL 78 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhC-CCCCEEE
Confidence 4579999886556667888888888876544321111122333468988874321 1111 1234444442 4578877
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 79 l~ 80 (221)
T PRK10766 79 VT 80 (221)
T ss_pred EE
Confidence 64
No 209
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=83.25 E-value=18 Score=27.50 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=19.5
Q ss_pred CeEEEEEC-CCChHHHHHHHH----HHc-CCEEEEEeC
Q 031223 25 NPIIVIDN-YDSFTYNLCQYM----GEL-GYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~l----~~~-G~~~~v~~~ 56 (163)
++|+||-. ..+.+..+.+++ ++. |+++++++.
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 36788833 234566655544 444 888888764
No 210
>PRK03094 hypothetical protein; Provisional
Probab=83.09 E-value=2 Score=28.32 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~ 80 (163)
...+.++|++.|++++-+... .+. ..+|++|++|-..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n 47 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSN 47 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcc
Confidence 346889999999998766431 122 37999999997554
No 211
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=83.01 E-value=12 Score=26.51 Aligned_cols=79 Identities=13% Similarity=0.001 Sum_probs=38.0
Q ss_pred CeEEEEE-CCCChHHHHHHHH----HHcCCEEE-EEeCCCC--CHHHHhccCCCEEEeCCCCC-CCCCC-hhHHHHHHHh
Q 031223 25 NPIIVID-NYDSFTYNLCQYM----GELGYHFE-VYRNDEL--TVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL 94 (163)
Q Consensus 25 ~~Ilvid-~~~~~~~~~~~~l----~~~G~~~~-v~~~~~~--~~~~~~~~~~dgvvl~GG~~-~~~d~-~~~~~~i~~~ 94 (163)
|+++||= -..+.+..+++.+ .+.|.+++ +.+..+. ...++ .++|.||| |.|- ..... +....++.++
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~d~iil-gs~t~~~g~~p~~~~~fl~~l 77 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDP--ENYDLVFL-GTWTWERGRTPDEMKDFIAEL 77 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCCh--hhCCEEEE-EcCeeCCCcCCHHHHHHHHHh
Confidence 4666762 2334566655554 44577766 2322110 11122 36898888 5432 22222 2455666664
Q ss_pred -CCCCCEEEEehH
Q 031223 95 -GPTVPLFGVCMG 106 (163)
Q Consensus 95 -~~~~PvLGIC~G 106 (163)
.+++.+.-++.|
T Consensus 78 ~~~~k~~avfgtg 90 (140)
T TIGR01754 78 GYKPSNVAIFGTG 90 (140)
T ss_pred cccCCEEEEEEcC
Confidence 345555434433
No 212
>PRK13435 response regulator; Provisional
Probab=82.79 E-value=7.8 Score=27.01 Aligned_cols=87 Identities=8% Similarity=0.026 Sum_probs=47.6
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
+..++|+|++........+.+.|...|+.+.....+... ...+....+|.+|+--......+.-...+.+++ ....|+
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-~~~~pi 81 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-DGGVEV 81 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-CCCCCE
Confidence 345789999986666767888888888775433222111 111223468988883321100111122333333 246899
Q ss_pred EEEehHHHH
Q 031223 101 FGVCMGLQC 109 (163)
Q Consensus 101 LGIC~G~Ql 109 (163)
+-++--.+.
T Consensus 82 i~ls~~~~~ 90 (145)
T PRK13435 82 VFMTGNPER 90 (145)
T ss_pred EEEeCCHHH
Confidence 988765553
No 213
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=82.73 E-value=3.2 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=26.6
Q ss_pred ccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 66 RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 66 ~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
..++|.+|..||-+ .++...+.+ ..++|++||=.|.
T Consensus 74 ~~~~D~ii~lGGDG------T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG------TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHH------HHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCH------HHHHHHHHhccCCCcEEeecCCC
Confidence 35899999999943 456667775 3589999998874
No 214
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=82.62 E-value=12 Score=32.03 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h--ccCCCEEEeCCCCC
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG 79 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~--~~~~dgvvl~GG~~ 79 (163)
+++...+.++|++.|+++.... .| +.+.+ . ..++|.||++||-+
T Consensus 19 dtN~~~l~~~L~~~G~~v~~~~~v~D--d~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 19 NTNAQWLADFLAHQGLPLSRRTTVGD--NPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred EchHHHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3456678899999998876332 22 12222 1 13799999999955
No 215
>PRK03670 competence damage-inducible protein A; Provisional
Probab=82.57 E-value=13 Score=29.81 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHcCCEEEEEe--CCCCC--HHHHh---ccCCCEEEeCCCCC
Q 031223 35 SFTYNLCQYMGELGYHFEVYR--NDELT--VEELK---RKNPRGVLISPGPG 79 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~--~~~~~--~~~~~---~~~~dgvvl~GG~~ 79 (163)
++...+.++|.+.|+++.... .|+.. .+.+. ...+|.||++||-+
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 455568899999999876433 22111 11221 12489999999965
No 216
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=82.29 E-value=13 Score=26.69 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=44.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
.+.+|+++|........+.+.|...|+.+............+....+|.+++--... ..+.-.....+++.....|++-
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~~-~~~~~~~~~~l~~~~~~~~ii~ 80 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMP-GIDGIELLRRLKARGSPLPVIV 80 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCCCEEE
Confidence 346799998865566678888888887765443210011222234688777732211 1111223444555445688887
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 81 l~ 82 (202)
T PRK09390 81 MT 82 (202)
T ss_pred EE
Confidence 65
No 217
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=82.22 E-value=8.5 Score=28.39 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=43.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
++|+++|....+...+...|...|+.+............+....+|.+++--.. +... -...+.+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~~--~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGL--PDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCCcEEEE
Confidence 479999886666777888888888876544321111122223468877773221 1111 1233444443456788766
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 79 s 79 (222)
T PRK10643 79 T 79 (222)
T ss_pred E
Confidence 3
No 218
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=82.16 E-value=15 Score=30.35 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=40.8
Q ss_pred CCeEEEEECC---------CChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h---ccCCCEEEeCCCCCCCCCChhH
Q 031223 24 KNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K---RKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 24 ~~~Ilvid~~---------~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~---~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.+++.||.-+ +++...+..+|++.|+++..+..-..+.+.+ . ...+|.||++||. ++...+..
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGt-svg~~D~t 237 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGA-SVDPDDVT 237 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCc-ccCCcchH
Confidence 3678888432 3455668889999999876443110122222 1 1238999999984 44444444
Q ss_pred HHHHHHh
Q 031223 88 LQTVLEL 94 (163)
Q Consensus 88 ~~~i~~~ 94 (163)
.+.++++
T Consensus 238 p~Ai~~~ 244 (312)
T cd03522 238 PAAIRAA 244 (312)
T ss_pred HHHHHhc
Confidence 5555554
No 219
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=81.45 E-value=8.2 Score=29.51 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
.+.+++++.|+.+.+...+.... +.+...++||+|+.+... ... ..+...+++|+..++
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~---~~~~~~~~ipvv~~~ 84 (267)
T cd06284 20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----PPT---ALTALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CHH---HHHHHhcCCCEEEEe
Confidence 46667778898887765432111 112234789999865421 111 112233567877654
No 220
>CHL00148 orf27 Ycf27; Reviewed
Probab=81.40 E-value=13 Score=27.82 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=45.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
.++|+++|....+...+.+.|...|+.+............+....+|.+++--.... .+.-...+.+++. ...|++.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~-~~g~~~~~~l~~~-~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPK-LDGYGVCQEIRKE-SDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhc-CCCcEEEE
Confidence 468999998766777788888888877654321101112233346898887332111 1111234444443 46898888
Q ss_pred eh
Q 031223 104 CM 105 (163)
Q Consensus 104 C~ 105 (163)
+-
T Consensus 84 s~ 85 (240)
T CHL00148 84 TA 85 (240)
T ss_pred EC
Confidence 63
No 221
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=81.34 E-value=2.7 Score=32.95 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=50.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHH-hCCCCCEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE-LGPTVPLFG 102 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~-~~~~~PvLG 102 (163)
++|+||+-.......+...|...|+++..........+.+... ||.||+==+ -|.-.+ .+...+|+ .....||+-
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~--lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLM--LPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECC--CCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5799998766677789999999999998875321112333334 999988221 122222 34555664 245678888
Q ss_pred EehH
Q 031223 103 VCMG 106 (163)
Q Consensus 103 IC~G 106 (163)
+.--
T Consensus 78 Lta~ 81 (229)
T COG0745 78 LTAR 81 (229)
T ss_pred EECC
Confidence 8765
No 222
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=81.12 E-value=8.1 Score=28.54 Aligned_cols=80 Identities=9% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~PvL 101 (163)
..+|+++|....+...+...|...|+.+............+....+|.+++--.... .+.-...+.+++. ....|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~-~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPG-TSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCCCC-CcHHHHHHHHHccccCCCCCEE
Confidence 467999998666677788888888887654332111112233346898887322111 1111233444432 2467888
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-++
T Consensus 81 ~ls 83 (226)
T TIGR02154 81 MLT 83 (226)
T ss_pred EEe
Confidence 775
No 223
>PRK09191 two-component response regulator; Provisional
Probab=81.11 E-value=10 Score=29.20 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=45.0
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
....+|+++|....+...+...|+..|+.+.....+.. ....+....+|.+|+--......+.-...+.+++.. ..|+
T Consensus 135 ~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pi 213 (261)
T PRK09191 135 QVATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTF-DVPV 213 (261)
T ss_pred cCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHhC-CCCE
Confidence 34467999998666666788888888877653322211 122233346898888432110011112233344333 6898
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 214 i~ls~ 218 (261)
T PRK09191 214 IFITA 218 (261)
T ss_pred EEEeC
Confidence 86644
No 224
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=80.86 E-value=0.24 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.5
Q ss_pred CEEEEehHHHHHHHHhC
Q 031223 99 PLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~G 115 (163)
-..|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 45799999999987654
No 225
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.77 E-value=8.2 Score=31.09 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=42.4
Q ss_pred eEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-C-CCCC
Q 031223 26 PIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVP 99 (163)
Q Consensus 26 ~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~-~~~P 99 (163)
++.++-+.... ...+.++|++.|+++..- . .++|.+|..||-+ .+....+.+ . .++|
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~---------~--~~~D~vi~lGGDG------T~L~a~~~~~~~~~~p 66 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH---------P--KNANIIVSIGGDG------TFLQAVRKTGFREDCL 66 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC---------C--CCccEEEEECCcH------HHHHHHHHhcccCCCe
Confidence 57777664332 223666788888866421 1 2578999999954 356666665 2 3789
Q ss_pred EEEEeh-H
Q 031223 100 LFGVCM-G 106 (163)
Q Consensus 100 vLGIC~-G 106 (163)
++||=. |
T Consensus 67 ilgIn~~G 74 (264)
T PRK03501 67 YAGISTKD 74 (264)
T ss_pred EEeEecCC
Confidence 999999 7
No 226
>PRK11173 two-component response regulator; Provisional
Probab=80.67 E-value=12 Score=28.36 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
..+|++++........+...|+..|+.+............+....+|.+++--.. +... -...+.+++ ....|++-
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~-~~~~pii~ 79 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINL--PGKNGLLLARELRE-QANVALMF 79 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCC--CCCCHHHHHHHHhc-CCCCCEEE
Confidence 3579999876566777888898889876654321111222333468988873221 1111 123334443 24678877
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 80 lt 81 (237)
T PRK11173 80 LT 81 (237)
T ss_pred EE
Confidence 65
No 227
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=80.27 E-value=4.6 Score=21.04 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=28.1
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
++++++........+.+.+...|..+...+........+....++.+++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 50 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 5788887555666677888888877544432111112222235777766
No 228
>PRK06242 flavodoxin; Provisional
Probab=80.26 E-value=10 Score=27.01 Aligned_cols=75 Identities=13% Similarity=0.020 Sum_probs=40.1
Q ss_pred CeEEEEECC--CChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh-C-CCC
Q 031223 25 NPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-G-PTV 98 (163)
Q Consensus 25 ~~Ilvid~~--~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-~-~~~ 98 (163)
|+++||-.- .+++..+++.+.+ ++. ++++......+++ .++|.||+ |+|--.. -.+.+.+++.++ . +++
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~--~~~~i~~~~~~~~--~~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~~~~k 75 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDA--EVIDPGDVNPEDL--SEYDLIGF-GSGIYFGKFHKSLLKLIEKLPPVSGK 75 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCc--EEecHHHCCcccH--hHCCEEEE-eCchhcCCcCHHHHHHHHhhhhhcCC
Confidence 456676442 3678888888865 444 3443221122233 37998988 6652111 123455566553 2 567
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|+.-+|
T Consensus 76 ~~~~f~ 81 (150)
T PRK06242 76 KAFIFS 81 (150)
T ss_pred eEEEEE
Confidence 776554
No 229
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.14 E-value=12 Score=27.38 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=45.0
Q ss_pred CCCCeEEEEEC----CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCC-CChhHHHHHH
Q 031223 22 NNKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVL 92 (163)
Q Consensus 22 ~~~~~Ilvid~----~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~-d~~~~~~~i~ 92 (163)
+.++||++.-- ++--..-+.++|++.|+++...... .+.+++- ..+.|.|++|+=.+.-. ....+.+.++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 56788888833 2223445788999999999877654 3444442 24799999977433211 2234566666
Q ss_pred Hh
Q 031223 93 EL 94 (163)
Q Consensus 93 ~~ 94 (163)
+.
T Consensus 89 e~ 90 (143)
T COG2185 89 EA 90 (143)
T ss_pred Hh
Confidence 65
No 230
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.01 E-value=15 Score=28.28 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
.+.+++++.|+.+.+...+... .+.+...++||+|+.+.. ..+.....+.+.++ ..++|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEEEE
Confidence 4667777889988776543211 112223579999997642 11211122333332 356776655
No 231
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=79.61 E-value=15 Score=26.94 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=43.4
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
++|+++|........+.+.+...|..+............+....+|.+++.-.... .+.-.....+++.....|++-++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~~~~-~~~~~~~~~i~~~~~~~~ii~lt 79 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPG-MDGLEVLQRLRKRGQTLPVLLLT 79 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEEEEE
Confidence 46899998766677788888888876654322100112222346898887322111 11112344444444567887765
No 232
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=79.53 E-value=6.2 Score=35.14 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
++...+..++++.|+++..+..-..+.+.+. . .++|.||++||. ++.+.+...+.++
T Consensus 206 sNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGt-S~G~~D~~~~al~ 268 (546)
T PRK14497 206 SNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGT-SAGEKDFVHQAIR 268 (546)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCc-cCCCCccHHHHHh
Confidence 3455678889999998765432111233332 1 369999999994 3443333333333
No 233
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=79.44 E-value=13 Score=31.56 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
....+|+|||........+.+.|...|+.+............+....+|.+++--. . +... -...+.+++.....|+
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlillD~~-~-p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIR-M-PEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC-C-CCCCHHHHHHHHHhcCCCCCE
Confidence 34567999998666677788888888987765432111122233346887776322 1 2212 1234444444456888
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+.+.
T Consensus 80 I~lt 83 (457)
T PRK11361 80 ILMT 83 (457)
T ss_pred EEEe
Confidence 7764
No 234
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=79.24 E-value=4.8 Score=28.84 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHcCCEEEE---EeCCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 34 DSFTYNLCQYMGELGYHFEV---YRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v---~~~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
+++...+.++|++.|+++.. ++.+ .+.+. . .+.|.||.+||-+ +...+...+.+.++ . +++-|+
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~~v~Dd---~~~i~~~l~~~~~~~D~VittGG~g-~~~~D~t~~a~~~~~~--~~l~~~ 89 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYGIVPDD---PDAIKEALRRALDRADLVITTGGTG-PGPDDVTPEALAEAGG--RELPGF 89 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEEEEESS---HHHHHHHHHHHHHTTSEEEEESSSS-SSTTCHHHHHHHHHSS--EE-HHH
T ss_pred EhHHHHHHHHHHHcCCeeeEEEEECCC---HHHHHHHHHhhhccCCEEEEcCCcC-cccCCcccHHHHHhcC--cccccC
Confidence 34566788999999987653 3322 33322 1 3679999999954 34444455666664 3 233333
Q ss_pred ehHHHHHHHHhCC
Q 031223 104 CMGLQCIGEAFGG 116 (163)
Q Consensus 104 C~G~QlLa~a~Gg 116 (163)
..=++-++...|.
T Consensus 90 ~~~~~~~~~~pg~ 102 (144)
T PF00994_consen 90 EELFRGVSMRPGK 102 (144)
T ss_dssp HHHHHHHHHHSTT
T ss_pred hHHHHHHHHHhhc
Confidence 3334444444444
No 235
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=79.03 E-value=20 Score=30.42 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=40.0
Q ss_pred CeEEEE-ECC---CChHHHHHHHHHHcCCEEEEEeCCC--CCHHH-------HhccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvi-d~~---~~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~-------~~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++|| |-+ .++...+.+.|.+.|+++.+++.-. .+.+. +...++|.||=.|| +|+-|..+.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~ 104 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKA 104 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 356666 443 2366778899999998888875321 12222 33468999998888 677665443
No 236
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=78.84 E-value=14 Score=27.47 Aligned_cols=79 Identities=16% Similarity=0.327 Sum_probs=43.8
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CCChhHHHHHHHhCCCCCEEEEe
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
+|+++|....+...+...|+..|+.+............+....+|.+++--..... .+.-.+.+.++......|++-+.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls 81 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT 81 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 58999876566777888888888876644321111222333468988873322111 11123344455433467888764
No 237
>PRK13558 bacterio-opsin activator; Provisional
Probab=78.36 E-value=11 Score=33.79 Aligned_cols=82 Identities=10% Similarity=0.010 Sum_probs=46.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
+..++|+|||........+.+.|...|+.+............+....+|.||+--. ....+.-...+.++.....+|++
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~-lp~~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 5 APTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGEIDCVVADHE-PDGFDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred CcceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccCCCEEEEecc-CCCCcHHHHHHHHHhcCCCCCEE
Confidence 34578999998766777777888877876654332100112222345888776222 11112223455555545668888
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-++
T Consensus 84 ~lt 86 (665)
T PRK13558 84 VVP 86 (665)
T ss_pred EEE
Confidence 775
No 238
>PRK06703 flavodoxin; Provisional
Probab=77.44 E-value=24 Score=25.30 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=28.6
Q ss_pred eEEEEE-CCCChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 26 PIIVID-NYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 26 ~Ilvid-~~~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
+++|+= -..+.+..+++ .+++.|+++++.+.++.+..++. ++|.|||
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vii 54 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIIL 54 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence 566662 23345665554 45556888888775533344554 7898888
No 239
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=77.38 E-value=12 Score=28.74 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.++... .+.+ .+...++||+|+.++
T Consensus 20 gi~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 20 GTKAEAEALGGDLRVYDAG-GDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3566778889988877532 1221 122347999999654
No 240
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=77.24 E-value=12 Score=35.38 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=49.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (163)
...+|+|+|........+.+.|+..|+.+.........++.+....||.|++ .- ..+...+ ++.+.+++.....|++
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~-D~-~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLT-DV-NMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4468999987655666788899999998766542211122333346898776 22 1122222 3456667665678999
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
++.-
T Consensus 878 ~lTa 881 (924)
T PRK10841 878 GVTA 881 (924)
T ss_pred EEEC
Confidence 8864
No 241
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=77.23 E-value=3.9 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=32.2
Q ss_pred CCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeee
Q 031223 68 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVR 120 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (163)
.-..+|++||.+-++-. +...+.|.. ..++--.||||-|. +||+....
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~ve 100 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVE 100 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEEE
Confidence 45678999998766532 223444555 36788999999885 67776554
No 242
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=77.10 E-value=30 Score=27.63 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCC-CHHHH----hccCCCEEEeCCCCCCCCCChhHHHHHHHh-C-CCCCEEE-EehHH-HH
Q 031223 39 NLCQYMGELGYHFEVYRNDEL-TVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVPLFG-VCMGL-QC 109 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~-~~~~~----~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~-~~~PvLG-IC~G~-Ql 109 (163)
.+.+.|++.|.++.+...... ....+ ...++|.||+.||-++ +.+.+..+ . .+.|.+| |=.|- =.
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT------l~~v~~~l~~~~~~~~lgiiP~Gt~N~ 96 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGT------INEVVNALIQLDDIPALGILPLGTAND 96 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCCh------HHHHHHHHhcCCCCCcEEEEcCcCHHH
Confidence 466778888998887654322 22211 1236899999999664 33333332 2 3456666 44432 23
Q ss_pred HHHHhC
Q 031223 110 IGEAFG 115 (163)
Q Consensus 110 La~a~G 115 (163)
+|+.+|
T Consensus 97 ~a~~l~ 102 (293)
T TIGR00147 97 FARSLG 102 (293)
T ss_pred HHHHcC
Confidence 344454
No 243
>PRK12359 flavodoxin FldB; Provisional
Probab=77.10 E-value=12 Score=28.02 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=32.3
Q ss_pred CeEEEEEC-CCChHHHHHHHHHH-cCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCC
Q 031223 25 NPIIVIDN-YDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~l~~-~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~ 78 (163)
|+|+|+=. ..+++..+++.+.+ .|.. +++.+....+.+++. +||.||+ |.|
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~--~yD~iIl-G~p 54 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLME--QYDVLIL-GIP 54 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHc--cCCEEEE-Eec
Confidence 46777733 33478888888865 5653 566665433445554 7998888 554
No 244
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.03 E-value=14 Score=25.29 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCC
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 77 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG 77 (163)
..+...|+..|+++..+..+ .+.+++ ...++|.|.+|..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecc
Confidence 34778889999999766544 444444 3458999999876
No 245
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=77.03 E-value=23 Score=31.92 Aligned_cols=45 Identities=29% Similarity=0.237 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCC
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~ 79 (163)
++...+..+|++.|+++..+..-..+.+.+ .. .++|.||.+||.+
T Consensus 213 sn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 213 VNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred ChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 455568888999999876443211122222 11 2699999999964
No 246
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=76.78 E-value=6.8 Score=28.04 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh---CCCCCEEEEehH
Q 031223 34 DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL---GPTVPLFGVCMG 106 (163)
Q Consensus 34 ~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~---~~~~PvLGIC~G 106 (163)
.+++..++++|.+ ++.....+.......+.....+||.||+.++...-.-...+.+++++. -+++|+.-+|-|
T Consensus 8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALFSVG 84 (143)
T ss_pred CchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 3466666666644 332223332221100111224899999844322222334456666542 356777655443
No 247
>PRK06849 hypothetical protein; Provisional
Probab=76.78 E-value=19 Score=30.06 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
+.+++|+|+.......-.+++.|.+.|+++.++..+
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456889999875545667999999999999888654
No 248
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=76.68 E-value=11 Score=26.89 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=44.2
Q ss_pred CeEEEEECC---CChHHHHHHHH----HHcCCEEEEEeCCCCC-----------------HHHHhc--cCCCEEEeCCCC
Q 031223 25 NPIIVIDNY---DSFTYNLCQYM----GELGYHFEVYRNDELT-----------------VEELKR--KNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~---~~~~~~~~~~l----~~~G~~~~v~~~~~~~-----------------~~~~~~--~~~dgvvl~GG~ 78 (163)
|||++|..- .+.+..+.+++ ++.|+++++++..+.. .+++.. .+.|++|+ +.|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~-~sP 79 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF-ASP 79 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE-EEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE-eec
Confidence 689999542 35666655544 4568999999765320 011111 36899998 444
Q ss_pred CCCCCC-hh---HHHHHH----HhCCCCCEEEEehH
Q 031223 79 GAPQDS-GI---SLQTVL----ELGPTVPLFGVCMG 106 (163)
Q Consensus 79 ~~~~d~-~~---~~~~i~----~~~~~~PvLGIC~G 106 (163)
--.... .. +.+.+. ..-++||++.||.|
T Consensus 80 ~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 80 VYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 211111 22 233332 12368999988754
No 249
>PRK09267 flavodoxin FldA; Validated
Probab=76.47 E-value=27 Score=25.49 Aligned_cols=78 Identities=13% Similarity=0.018 Sum_probs=41.4
Q ss_pred eEEEEE-CCCChHHHHHHHHHH-cC-CEEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCC-ChhHHHHHHHh----CC
Q 031223 26 PIIVID-NYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQD-SGISLQTVLEL----GP 96 (163)
Q Consensus 26 ~Ilvid-~~~~~~~~~~~~l~~-~G-~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d-~~~~~~~i~~~----~~ 96 (163)
+|+|+= -..+.+..+++++.+ ++ .++++++....+..++. +||.||| |.|- .... .....+++..+ -+
T Consensus 3 ki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~--~~d~vi~-g~pt~~~G~~~~~~~~fl~~~~~~~l~ 79 (169)
T PRK09267 3 KIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFE--AYDLLIL-GIPTWGYGELQCDWDDFLPELEEIDFS 79 (169)
T ss_pred eEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHh--hCCEEEE-EecCcCCCCCCHHHHHHHHHHhcCCCC
Confidence 677773 334577778877755 32 35566654433334444 7999888 4432 1111 12233344332 25
Q ss_pred CCCEEEEehH
Q 031223 97 TVPLFGVCMG 106 (163)
Q Consensus 97 ~~PvLGIC~G 106 (163)
++|+.-+..|
T Consensus 80 ~k~vaifg~g 89 (169)
T PRK09267 80 GKKVALFGLG 89 (169)
T ss_pred CCEEEEEecC
Confidence 6777665544
No 250
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=76.17 E-value=14 Score=31.35 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
++...+..+|++.|+++..+..-..+.+.+ .. .++|.||.+||.+ +.+.+...+.+.
T Consensus 195 sn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s-~g~~D~~~~al~ 257 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS-VGDYDFVKEVLE 257 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC-CCcchhHHHHHH
Confidence 455668888999999876553211122322 11 3599999999954 333333333333
No 251
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=76.02 E-value=29 Score=26.70 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred HHHHHHHcCCEEEEEeCC-CCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 40 LCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~-~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
+.+++++.|+++.+...+ ..+.+ .+...++||+|+.+...+ ...+.+..+ +.++|+..+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 21 YENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDV-----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChH-----HhHHHHHHHHHCCCeEEEE
Confidence 556777889988876432 11211 122347999998654211 112223332 356787655
No 252
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=76.00 E-value=19 Score=30.75 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=45.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG 102 (163)
..+|+|||....+...+.+.|...|+.+............+....+|.+++--. .+. +.-.+.+.+++.....|++-
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~--lp~~dgl~~l~~ir~~~~~~pvIv 80 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEECCC--CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 357999998766777788899988987654432111122233346887776221 111 11123444554445678887
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
++
T Consensus 81 lt 82 (469)
T PRK10923 81 MT 82 (469)
T ss_pred EE
Confidence 76
No 253
>PRK13054 lipid kinase; Reviewed
Probab=75.70 E-value=18 Score=29.20 Aligned_cols=57 Identities=18% Similarity=0.026 Sum_probs=33.6
Q ss_pred CCeEEEEECCCC-h---HHHHHHHHHHcCCEEEEEeCCC-CCHHHH----hccCCCEEEeCCCCCC
Q 031223 24 KNPIIVIDNYDS-F---TYNLCQYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGA 80 (163)
Q Consensus 24 ~~~Ilvid~~~~-~---~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~~~~~dgvvl~GG~~~ 80 (163)
.+++++|-|..+ . ...+.+.|++.|+++++..... ....++ ...++|.||+.||-++
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 68 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT 68 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence 345666655433 1 2235667888888877654321 122222 2246899999999774
No 254
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.66 E-value=10 Score=29.46 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+++.+...+ .+. +.+...++||||+.+.
T Consensus 20 ~i~~~~~~~g~~v~~~~~~-~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 20 AAKAHAKALGYELISTDAQ-GDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3667778899998876543 122 1122357999999653
No 255
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=75.42 E-value=27 Score=29.28 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=42.2
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISP 76 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~G 76 (163)
+..+.+-++..+ .|++||--..+ +...+.+.|++.|+++.++.-- +.+.+.+ ...++|.||=.|
T Consensus 14 l~~l~~~~~~~g--~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 14 LNELGEEALKPG--KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred HHHHHHHHHhcC--CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 344444445433 57888843222 3445777888889888776311 1223322 234899999667
Q ss_pred CCCCCCCChhH
Q 031223 77 GPGAPQDSGIS 87 (163)
Q Consensus 77 G~~~~~d~~~~ 87 (163)
| +++-|..+.
T Consensus 92 G-GS~iD~aK~ 101 (380)
T cd08185 92 G-GSSMDTAKA 101 (380)
T ss_pred C-ccHHHHHHH
Confidence 6 556665443
No 256
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=75.37 E-value=15 Score=26.74 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=40.7
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
|+|+++|........+.+.|+..|+.+.....+.. ....+....+|.+++--.. ...+.-.....+++.....|++.+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ii~l 79 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYSGIIIIV 79 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCCeEEEE
Confidence 47899987655666788888888877642221111 1122333468877773321 111111233444443344676544
No 257
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=75.33 E-value=14 Score=29.23 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=55.8
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeC-CC--------CCHHHH-------hccCCCE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRN-DE--------LTVEEL-------KRKNPRG 71 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~-~~--------~~~~~~-------~~~~~dg 71 (163)
++..-+++-++-.+. .||.|+--|... ...+.++|++.|+++.-... .. .+.+.+ ...++|+
T Consensus 106 t~~~A~~~AL~alg~-~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDA 184 (239)
T TIGR02990 106 TPSSAAVDGLAALGV-RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADA 184 (239)
T ss_pred CHHHHHHHHHHHcCC-CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCE
Confidence 344455555555533 479999887653 55688899999999876522 10 122222 1236899
Q ss_pred EEeCCCCCCCCCChhHHHHHHHhC--CCCCEEEEehHHHHHHH
Q 031223 72 VLISPGPGAPQDSGISLQTVLELG--PTVPLFGVCMGLQCIGE 112 (163)
Q Consensus 72 vvl~GG~~~~~d~~~~~~~i~~~~--~~~PvLGIC~G~QlLa~ 112 (163)
|++++.... ..+.+.+++ =+|||+-. -|.++.
T Consensus 185 ifisCTnLr------t~~vi~~lE~~lGkPVlsS---Nqat~W 218 (239)
T TIGR02990 185 LFLSCTALR------AATCAQRIEQAIGKPVVTS---NQATAW 218 (239)
T ss_pred EEEeCCCch------hHHHHHHHHHHHCCCEEEH---HHHHHH
Confidence 999876422 233344432 35999864 455544
No 258
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=75.27 E-value=21 Score=30.11 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=46.0
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
..++|+|+|........+.+.|...|+.+............+....+|.|++--.. ...+.-.+...+++.....|++-
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~DlvilD~~m-~~~~G~~~~~~ir~~~~~~~vi~ 82 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM-AEMDGIATLKEIKALNPAIPVLI 82 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCCeEEE
Confidence 34789999987667777888898888877554321111222333468877762211 11111123444555445678777
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
++
T Consensus 83 lt 84 (441)
T PRK10365 83 MT 84 (441)
T ss_pred EE
Confidence 76
No 259
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=75.22 E-value=3.6 Score=32.85 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=26.8
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
++|.+|..||-+ .+....+.+ ..++|+|||=.|.
T Consensus 25 ~~Dlvi~iGGDG------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDG------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCH------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 579999999954 366777774 6789999999885
No 260
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=74.96 E-value=31 Score=27.77 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCCeEEEEECCCChH--------HHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEe
Q 031223 23 NKNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLI 74 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~--------~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl 74 (163)
.++||+|+=.+.|-. ..+.++|++.|+++..+..+... ...+...++|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 356899996554432 24888999999998877543111 23344457886664
No 261
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.77 E-value=24 Score=30.18 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh-------------ccCCCEEEeCCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-------------RKNPRGVLISPGPG 79 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~-------------~~~~dgvvl~GG~~ 79 (163)
+.+|+||..+.+-.. .++.|.+.|+.+.+.+........+. -.++|.||.|+|-.
T Consensus 9 ~~~i~viG~G~~G~~-~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 9 GKTVAVFGLGGSGLA-TARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred CCEEEEEeecHhHHH-HHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 357999999876554 58999999998877753211111110 02589999999854
No 262
>PLN03029 type-a response regulator protein; Provisional
Probab=74.35 E-value=19 Score=27.76 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
...+|+++|........+.+.|+..|+.+....
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~ 39 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVD 39 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEEC
Confidence 457899999765566678888888898876553
No 263
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=74.32 E-value=21 Score=27.55 Aligned_cols=41 Identities=7% Similarity=0.158 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
...+.+++++.|+++.+...+.... ..+...++||+|+.+.
T Consensus 18 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 18 TKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3346677788999998876532111 1122347999999764
No 264
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=74.32 E-value=31 Score=28.53 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCCCHHH----Hh---ccCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK---RKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~----~~---~~~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
+++...+..+|++.|+++..+..-..+.+. +. ..++|.||.+||.+ +...+...+.++++
T Consensus 174 Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg-~g~~D~tpeAl~~l 240 (312)
T PRK03604 174 DRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTG-LGPRDVTPEALAPL 240 (312)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCC-CCCCccHHHHHHHh
Confidence 345557889999999987654321011222 21 13689999999954 34333455566664
No 265
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.08 E-value=16 Score=29.89 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCCE
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPRG 71 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~dg 71 (163)
+-....+..++.++..+..+++++|..+ ++ |.....++.++.|+.++.+...+ .+.+++ . ..+.||
T Consensus 14 ~i~~~lk~~i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~G 93 (285)
T PRK14189 14 QLRAEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHG 93 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCe
Confidence 3445566677777666666778888544 23 45566778888999999887542 222322 1 136789
Q ss_pred EEe
Q 031223 72 VLI 74 (163)
Q Consensus 72 vvl 74 (163)
|++
T Consensus 94 Ilv 96 (285)
T PRK14189 94 ILV 96 (285)
T ss_pred EEE
Confidence 987
No 266
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.47 E-value=38 Score=25.96 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHcCCEEEEEeCC-CCCHH-------HHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~-~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+++++.|+.+.+...+ ..+.+ .+...++||+|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 21 AEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 556777789998887531 11221 122347999999754
No 267
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=72.77 E-value=13 Score=28.73 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=21.2
Q ss_pred HHHHHHHc---CC--EEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 40 LCQYMGEL---GY--HFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~---G~--~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+.+++. |+ ++.+...+ .+.+ .+...++||||+.+.
T Consensus 21 i~~~~~~~~~~g~~~~l~i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 21 FKAQAKELKKAGLISEFIVTSAD-GDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHhhhccCCeeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45666778 87 44555432 1211 122358999999764
No 268
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=72.58 E-value=31 Score=25.75 Aligned_cols=79 Identities=11% Similarity=0.230 Sum_probs=44.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
+.+|+++|....+...+.+.|...|+.+............+....+|.+++--.. +... -...+.++.. ...|++-
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~--~~~~g~~~~~~l~~~-~~~pii~ 86 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLML--PGTDGLTLCREIRRF-SDIPIVM 86 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCC--CCCCHHHHHHHHHhc-CCCCEEE
Confidence 3489999986667777888888888876544321101122333468988873221 1111 1233444442 4588887
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
++-
T Consensus 87 l~~ 89 (240)
T PRK10710 87 VTA 89 (240)
T ss_pred EEc
Confidence 754
No 269
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=72.46 E-value=37 Score=25.86 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC-------HHHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELT-------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~-------~~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+..+ ++.+...++||+|+.+.
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 20 AIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4666777788888777543211 11122347999998664
No 270
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=72.40 E-value=22 Score=29.32 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=40.6
Q ss_pred CCCCeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCCCCCCCCChhHH
Q 031223 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISL 88 (163)
Q Consensus 22 ~~~~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG~~~~~d~~~~~ 88 (163)
....+|.+|-. ...|-. -+.++.++.|+++.+..+...+. +.+...++|+|++++. +...+.
T Consensus 21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~-----d~~al~ 95 (336)
T PRK15408 21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV-----SPDGLC 95 (336)
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----CHHHHH
Confidence 34467887743 223432 25567778999987643322221 2222458999999642 233233
Q ss_pred HHHHHh-CCCCCEEE
Q 031223 89 QTVLEL-GPTVPLFG 102 (163)
Q Consensus 89 ~~i~~~-~~~~PvLG 102 (163)
+.++++ ++++|+.-
T Consensus 96 ~~l~~a~~~gIpVV~ 110 (336)
T PRK15408 96 PALKRAMQRGVKVLT 110 (336)
T ss_pred HHHHHHHHCCCeEEE
Confidence 444443 45566543
No 271
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=72.33 E-value=33 Score=27.96 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCC-CHHH----HhccCCCEEEeCCCCCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGA 80 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~-~~~~----~~~~~~dgvvl~GG~~~ 80 (163)
...+.+.|++.|++..+...... ...+ +...++|.||..||-+.
T Consensus 22 ~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 22 LREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch
Confidence 33467778888988877654322 2222 22347999999999764
No 272
>PRK13055 putative lipid kinase; Reviewed
Probab=72.23 E-value=41 Score=27.70 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=33.0
Q ss_pred CeEEEEECCCC-h------HHHHHHHHHHcCCEEEEEeCC--CCCHHH----HhccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDS-F------TYNLCQYMGELGYHFEVYRND--ELTVEE----LKRKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~-~------~~~~~~~l~~~G~~~~v~~~~--~~~~~~----~~~~~~dgvvl~GG~~~ 80 (163)
+|+++|-|-.+ . ...+.+.|++.|++++++... .....+ ....++|.||+.||-++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 71 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT 71 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence 46777755222 1 123567788889887765322 112222 22246899999999775
No 273
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=72.11 E-value=7.7 Score=28.76 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
|+|+++|....+...+...|+..|+.+............+....+|.+++--.... .+.-...+.+++. ...|++-+.
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~-~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG-MDGWQILQTLRTA-KQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEECCCCC-CCHHHHHHHHHcC-CCCCEEEEE
Confidence 47999998666677788888888876554432111122233347898887322111 1111233334432 357887765
No 274
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.87 E-value=15 Score=29.91 Aligned_cols=71 Identities=23% Similarity=0.182 Sum_probs=45.2
Q ss_pred ccCCChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
+++-....++.++.+++.+..+++++|.-++. |.....+..++.|+.++.+...+ .+.+++ . ..+.
T Consensus 10 a~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V 89 (282)
T PRK14166 10 SAKIKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSV 89 (282)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 34445566677777776666777777754422 45556677788999999887542 233332 1 1367
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
+||++
T Consensus 90 ~GIiv 94 (282)
T PRK14166 90 HGILV 94 (282)
T ss_pred CEEEE
Confidence 89997
No 275
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.87 E-value=15 Score=30.08 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=44.9
Q ss_pred ccCCChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
+++-....+..++.+++.+..+++++|.-++. |...-.++.++.|+.++.+...+ .+.+++ . ..+.
T Consensus 12 a~~i~~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V 91 (286)
T PRK14175 12 AKDYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSV 91 (286)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 34445566777777776666677888855432 45556677788999999886542 222222 1 1367
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
+||++
T Consensus 92 ~GIiv 96 (286)
T PRK14175 92 SGILV 96 (286)
T ss_pred CEEEE
Confidence 89987
No 276
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.68 E-value=29 Score=26.76 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
+.+++++.|+.+.+...+..+.+ .+...++||+|+.+.. .....+.++.+ ++++|++-+.
T Consensus 22 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-----~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 22 AEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD-----PDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-----hHHhHHHHHHHHHCCCeEEEeC
Confidence 55677778999888765421221 1223479999997642 11122334443 3567877663
No 277
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=71.65 E-value=39 Score=28.34 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=41.9
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCCh-----HHHHHHHHHHcCCEEEEEeCCC--CCHHH-------HhccCCCEEEeCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISP 76 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~~-----~~~~~~~l~~~G~~~~v~~~~~--~~~~~-------~~~~~~dgvvl~G 76 (163)
++.+-+-++.. +.|++||--..+. ...+.+.|++.|+++.++.--. .+.+. ....++|+||=.|
T Consensus 17 ~~~l~~~~~~~--~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG 94 (382)
T cd08187 17 ESELGKELKKY--GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVG 94 (382)
T ss_pred HHHHHHHHHHh--CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44444445544 3578888322122 3457778888898877664211 12222 2235899999667
Q ss_pred CCCCCCCChhH
Q 031223 77 GPGAPQDSGIS 87 (163)
Q Consensus 77 G~~~~~d~~~~ 87 (163)
| +++-|..+.
T Consensus 95 G-GS~iD~aK~ 104 (382)
T cd08187 95 G-GSVIDSAKA 104 (382)
T ss_pred C-hHHHHHHHH
Confidence 7 566665443
No 278
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=71.50 E-value=17 Score=25.34 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=37.9
Q ss_pred CChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh--------ccCCCEE
Q 031223 7 VPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELK--------RKNPRGV 72 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~--------~~~~dgv 72 (163)
-....+..+..++..+..+++++|..++. |.....+..++.|+.++.+... ..+.+++. ..+.+||
T Consensus 12 i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GI 91 (117)
T PF00763_consen 12 IKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGI 91 (117)
T ss_dssp HHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEE
Confidence 33455667777766677788888855433 3444556777899998877642 22333321 2368999
Q ss_pred Ee
Q 031223 73 LI 74 (163)
Q Consensus 73 vl 74 (163)
++
T Consensus 92 lv 93 (117)
T PF00763_consen 92 LV 93 (117)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 279
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.31 E-value=20 Score=27.60 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.++... .+. ..+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 21 VKSKAKALGYDAVELSAE-NSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHhcCCeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 556677789998877543 121 1222358999999653
No 280
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=71.06 E-value=21 Score=32.97 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=48.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh----CCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL----GPTV 98 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~----~~~~ 98 (163)
+++|+|+|........+.+.|+..|+.+..........+.+....||.|++ .- ..|... -...+.+++. ....
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~-D~-~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLM-DI-RMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEE-eC-CCCCCCHHHHHHHHHhchhhcCCCC
Confidence 468999997655667788899999998775532111122333347887776 22 112222 2344555542 2568
Q ss_pred CEEEEehH
Q 031223 99 PLFGVCMG 106 (163)
Q Consensus 99 PvLGIC~G 106 (163)
|++.++-.
T Consensus 768 pii~lt~~ 775 (921)
T PRK15347 768 MIVALTAN 775 (921)
T ss_pred cEEEEeCC
Confidence 99988743
No 281
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=70.96 E-value=13 Score=32.46 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=36.4
Q ss_pred hcCCCCCeEEEEEC-CCC--h-----HHHHHHHHHHcCCEEEEEeCCCC-CHHH----HhccCCCEEEeCCCCCC
Q 031223 19 KSKNNKNPIIVIDN-YDS--F-----TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGA 80 (163)
Q Consensus 19 ~~~~~~~~Ilvid~-~~~--~-----~~~~~~~l~~~G~~~~v~~~~~~-~~~~----~~~~~~dgvvl~GG~~~ 80 (163)
++.+..+|++||=| .++ - ...+...|++.|++++++..... ...+ +...+||+||+.||-+.
T Consensus 106 ~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGT 180 (481)
T PLN02958 106 DSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGI 180 (481)
T ss_pred hhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCH
Confidence 44445567777744 212 1 12345578889998887653311 1222 22347999999999774
No 282
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=70.91 E-value=12 Score=32.03 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=44.7
Q ss_pred CeEEEE----ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCC
Q 031223 25 NPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (163)
Q Consensus 25 ~~Ilvi----d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~P 99 (163)
.++||| .++.....+++++|-+ |+++-++++... .. +=+.-|..+..|. +.+.+.++.+..++-
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p--~~--------vp~~~~~f~ldDYi~~l~~~i~~~G~~v~ 171 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNA--RM--------VPLSAGKFDLEDYIDYLIEFIRFLGPDIH 171 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCC--CC--------CchhcCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 578888 3322345668888887 999888876421 11 1011122222222 124556666666699
Q ss_pred EEEEehHHHHHH
Q 031223 100 LFGVCMGLQCIG 111 (163)
Q Consensus 100 vLGIC~G~QlLa 111 (163)
++|+|.|--+..
T Consensus 172 l~GvCqgG~~~l 183 (406)
T TIGR01849 172 VIAVCQPAVPVL 183 (406)
T ss_pred EEEEchhhHHHH
Confidence 999999987643
No 283
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=70.82 E-value=32 Score=27.64 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCEEEeCCCCCC
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPGA 80 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dgvvl~GG~~~ 80 (163)
+++..-+.+.|.+.|+++.-...--.+.+++. ..++|-||++||-+-
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGP 72 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGP 72 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 35566689999999998764432101233331 236999999999763
No 284
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=70.74 E-value=36 Score=25.93 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.++....... +.+...++||||+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 46667778899888775432111 1222347999999765
No 285
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=70.50 E-value=21 Score=33.12 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
.+.+|+|+|........+.+.|...|+++..........+.+.. ..+|.|++ . ....+.......++......|+
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~--~~~~~g~~l~~~l~~~~~~ipI 772 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-D--DRLLDEEQAAAALHAAAPTLPI 772 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-C--CCCCCHHHHHHHHHhhCCCCCE
Confidence 34689999886666667888899999988766432111222322 13687887 2 1111222344555554567899
Q ss_pred EEEehHH
Q 031223 101 FGVCMGL 107 (163)
Q Consensus 101 LGIC~G~ 107 (163)
+-++-..
T Consensus 773 Ivls~~~ 779 (828)
T PRK13837 773 ILGGNSK 779 (828)
T ss_pred EEEeCCC
Confidence 9888643
No 286
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.45 E-value=16 Score=29.77 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=44.5
Q ss_pred ccCCChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
++.-....+..++.+++.+..+++++|.-++. |.....++.++.|+.++.+...+ .+.+++ . +.+.
T Consensus 12 a~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V 91 (284)
T PRK14193 12 ADEIKADLAERVAALKEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPAC 91 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 33444566677777776666677888854432 45556677788999998876432 233332 1 1357
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
+||++
T Consensus 92 ~GIlv 96 (284)
T PRK14193 92 TGYIV 96 (284)
T ss_pred CEEEE
Confidence 89987
No 287
>PRK15115 response regulator GlrR; Provisional
Probab=70.31 E-value=33 Score=29.04 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=46.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
...+|+|||........+...|+..|+.+............+....+|.||+--.. +... -.....+++.....|++
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~l--p~~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLRM--DEMDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCC--CCCCHHHHHHHHHhcCCCCcEE
Confidence 34789999987667777888888889876544321111222333468888773221 1111 12334444434567888
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-++-
T Consensus 82 vlt~ 85 (444)
T PRK15115 82 ILTA 85 (444)
T ss_pred EEEC
Confidence 7763
No 288
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=70.31 E-value=8.4 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCCEEEEehHHHHHHHH
Q 031223 88 LQTVLELGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 88 ~~~i~~~~~~~PvLGIC~G~QlLa~a 113 (163)
.+.+.+...+.+++|+|.|.|-+.+.
T Consensus 151 t~a~~r~~~~~k~vGlCh~~~~~~~~ 176 (183)
T PF02056_consen 151 TEALSRYTPKIKVVGLCHGPQGTRRQ 176 (183)
T ss_dssp HHHHHHHSTTSEEEEE-SHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCHHHHHHH
Confidence 44455444558999999999987664
No 289
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=70.31 E-value=31 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 20 GALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35567777888887775542211 1122347899998765
No 290
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.18 E-value=20 Score=29.29 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=44.4
Q ss_pred ccCCChhhHhhHHhhhcCCCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
+++-....+..++.++..+..+++++|.-+ ++ |...-.++.++.|++++.+...+ .+-+++ . ..+.
T Consensus 10 a~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 89 (282)
T PRK14169 10 SKKILADLKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDV 89 (282)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 344455566777777666666777777444 22 45556677888999999886542 222222 1 1367
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
|||++
T Consensus 90 ~GIlv 94 (282)
T PRK14169 90 DAILV 94 (282)
T ss_pred CEEEE
Confidence 99997
No 291
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=70.10 E-value=42 Score=27.54 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~G 76 (163)
...+.+.+++.|+.+.+...+. +.+ .+...++||+|+.|
T Consensus 77 ~~gi~~~~~~~gy~~~l~~~~~-~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 77 LKGIEEAAREAGYSLLLANTDD-DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 3447778888999998887553 222 22345899999988
No 292
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.06 E-value=24 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=22.2
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.++.....+.+ .+...++||||+.+.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~ 65 (294)
T cd06316 21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV 65 (294)
T ss_pred HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 55677788998875422211221 122347999999653
No 293
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=69.79 E-value=35 Score=25.26 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.1
Q ss_pred ECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEeh
Q 031223 31 DNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (163)
Q Consensus 31 d~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~ 105 (163)
....++|..+++++.+ ++. .++++..+.+ +.+ .+||-|++..+...-.-.....+++.++ ..++-+||.|-
T Consensus 5 sS~TGNTkkvA~aI~~~l~~-~~~~~~~~~~-~~~--~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G 77 (160)
T PF12641_consen 5 SSRTGNTKKVAEAIAEALGA-KDIVSVEEPP-EDL--EDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAG 77 (160)
T ss_pred ECCCChHHHHHHHHHHHCCC-ceeEeccccc-cCC--CCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecC
Confidence 4445678889998866 555 3445443221 112 3899888854433322334567777776 45667778773
No 294
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.75 E-value=17 Score=29.59 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=43.4
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCCE
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPRG 71 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~dg 71 (163)
.-....++.++.++..+..+++++|.-++. |...-.++.++.|+.++.+...+ .+.+++ . +.+.+|
T Consensus 12 ~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~G 91 (282)
T PRK14182 12 KVKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHG 91 (282)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCE
Confidence 334455666777766666777888855433 44456667788999999886432 232222 1 236789
Q ss_pred EEe
Q 031223 72 VLI 74 (163)
Q Consensus 72 vvl 74 (163)
|++
T Consensus 92 Iiv 94 (282)
T PRK14182 92 ILV 94 (282)
T ss_pred EEE
Confidence 997
No 295
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=69.54 E-value=33 Score=25.87 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=43.1
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
.+|++++........+...|+..|+.+............+....+|.+|+--. .+... -...+.+++ ....|++-+
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~~~~~ir~-~~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIM--LPGKDGMTICRDLRP-KWQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEEE
Confidence 37999987655677788888888987765532111122233346898887322 11111 123444444 234687765
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 79 ~ 79 (240)
T PRK10701 79 T 79 (240)
T ss_pred E
Confidence 4
No 296
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.47 E-value=20 Score=29.32 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=43.3
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEEEEECCC---C--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCC
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPIIVIDNYD---S--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPR 70 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~---~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~d 70 (163)
++-....+..++.++..+..+++++|.-++ + |.....++.++.|+.++.+...+ .+.+++ . +.+.+
T Consensus 13 ~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~ 92 (284)
T PRK14190 13 KEKREQLKEEVVKLKEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRIN 92 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 334455666777776656667777775442 2 44456677788999999886542 222222 1 23678
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 93 GIlv 96 (284)
T PRK14190 93 GILV 96 (284)
T ss_pred EEEE
Confidence 9987
No 297
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=69.17 E-value=19 Score=27.63 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=24.0
Q ss_pred HHHHHHHH-cCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 39 NLCQYMGE-LGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~-~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
.+.+++++ .|+.+.+...+ .+.+ .+...++||+|+.+.
T Consensus 20 gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAK-NDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 36677778 88888876543 1211 122348999999664
No 298
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=69.03 E-value=42 Score=28.09 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=37.6
Q ss_pred CeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCC-CCCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++||--... ....+...|++.|+++.++... +.+.+.+ ...++|.||=.|| +++-|..+.
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHH
Confidence 57887743222 3445777788889888776421 1222222 2347999998888 666665543
No 299
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=68.94 E-value=33 Score=25.72 Aligned_cols=82 Identities=9% Similarity=0.145 Sum_probs=42.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHhCCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDEL-TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLELGPTVP 99 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~~~~~P 99 (163)
+++|+|+|........+.+.|...+. .+.....+.. ..+.+....+|.+++--..... .+.-...+.+++.....|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 47899999876667778888876554 2222211100 1122223468988873221110 011123444444345578
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++-+..
T Consensus 83 iIvls~ 88 (216)
T PRK10840 83 IIVLTM 88 (216)
T ss_pred EEEEEe
Confidence 887753
No 300
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.91 E-value=25 Score=28.82 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=43.5
Q ss_pred cCCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 5 EAVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
++-....+.-++.+++. +..+++++|.-+ ++ |...-.+..++.|+.++.+...+ .+.+++ . +.+.
T Consensus 12 ~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V 91 (288)
T PRK14171 12 NEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEI 91 (288)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCC
Confidence 34445566777777665 556677777443 33 45556777888999999887532 222322 1 1367
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
+||++
T Consensus 92 ~GIlv 96 (288)
T PRK14171 92 SGIIV 96 (288)
T ss_pred CEEEE
Confidence 89997
No 301
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.51 E-value=28 Score=28.51 Aligned_cols=68 Identities=21% Similarity=0.125 Sum_probs=41.8
Q ss_pred CChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCCE
Q 031223 7 VPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPRG 71 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~dg 71 (163)
-....+..+++++.. +..+++++|.-+ ++ |...-.++.++.|+.++.+...+ .+.+++ . ..+.+|
T Consensus 20 i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~G 99 (287)
T PRK14176 20 IEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHG 99 (287)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCe
Confidence 334556666666554 555677777333 33 56667778888999998876532 222222 1 236799
Q ss_pred EEe
Q 031223 72 VLI 74 (163)
Q Consensus 72 vvl 74 (163)
|++
T Consensus 100 Ilv 102 (287)
T PRK14176 100 ILL 102 (287)
T ss_pred EEE
Confidence 997
No 302
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=68.51 E-value=26 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCC
Q 031223 35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPG 79 (163)
Q Consensus 35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~ 79 (163)
++...+..+|++.|+++..+..-..+.+.+ .. .++|.||.+||.+
T Consensus 394 sn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 394 SNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 445568889999999876443111122322 11 3699999999954
No 303
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=68.25 E-value=37 Score=27.39 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G 106 (163)
.+..++...+..+.+.......+ .+.....+|.+++.||-+ .+....+.+ ..++|++||=.|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDG------tlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 20 RLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDG------TLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred HHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcH------HHHHHHHHhccCCCCEEEEeCC
Confidence 46667777777766553211011 111124688888888843 355666664 466999999999
No 304
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=68.20 E-value=39 Score=25.80 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+.... ..+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 36667777888887764331111 1122346899888754
No 305
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=68.07 E-value=25 Score=32.12 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=48.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhC--CC-C
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PT-V 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~--~~-~ 98 (163)
.+.+|+|+|....+...+.+.|+..|+.+..........+.+....||.|++ .- ..|... -...+.+++.. .. .
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~Dlvl~-D~-~mp~~~G~e~~~~ir~~~~~~~~~ 601 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDEYDLVLL-DI-QLPDMTGLDIARELRERYPREDLP 601 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEE-cC-CCCCCCHHHHHHHHHhccccCCCC
Confidence 3468999987655666788889889988776542111122333346898776 22 122222 23445555532 44 4
Q ss_pred CEEEEehH
Q 031223 99 PLFGVCMG 106 (163)
Q Consensus 99 PvLGIC~G 106 (163)
|++.++-.
T Consensus 602 ~ii~~ta~ 609 (779)
T PRK11091 602 PLVALTAN 609 (779)
T ss_pred cEEEEECC
Confidence 88888764
No 306
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.69 E-value=35 Score=28.01 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=44.6
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCC
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPR 70 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~d 70 (163)
+.-....++.++.++..+..+++++|.-++. |.....++.++.|++++.+...+ .+.+++ . ..+.+
T Consensus 12 ~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~ 91 (297)
T PRK14167 12 AQIRDDLTDAIETLEDAGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVH 91 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3344556667777777676778888855433 45556677788999999887542 222222 1 23678
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 92 GIlv 95 (297)
T PRK14167 92 GILV 95 (297)
T ss_pred EEEE
Confidence 9997
No 307
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.56 E-value=24 Score=29.08 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred cccCCChhhHhhHHhhhcCCCCCeEEEE---ECCCC--hHHHHHHHHHHcCCEEEEEe-CCCCCHHHHh--------ccC
Q 031223 3 VAEAVPISKSLYLDDKKSKNNKNPIIVI---DNYDS--FTYNLCQYMGELGYHFEVYR-NDELTVEELK--------RKN 68 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~Ilvi---d~~~~--~~~~~~~~l~~~G~~~~v~~-~~~~~~~~~~--------~~~ 68 (163)
++++-....++.++.++..+..+++++| |..++ |...-.++.++.|+.++.+. +...+.+++. +.+
T Consensus 12 iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~ 91 (301)
T PRK14194 12 AAARVLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPS 91 (301)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCC
Q ss_pred CCEEEe
Q 031223 69 PRGVLI 74 (163)
Q Consensus 69 ~dgvvl 74 (163)
.|||++
T Consensus 92 V~GIlv 97 (301)
T PRK14194 92 VNGILL 97 (301)
T ss_pred CCeEEE
No 308
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=67.29 E-value=21 Score=23.94 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCeEEEE-ECCCC---hHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHH-h-C
Q 031223 24 KNPIIVI-DNYDS---FTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-L-G 95 (163)
Q Consensus 24 ~~~Ilvi-d~~~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~-~ 95 (163)
..+|+++ ..+-+ ....+.+.+++.|+++++.... ..++. ..++|.|++++-. . ...+.+++ + .
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~---~~~~~~~~~~~Dvill~pqi--~----~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS---YGAAGEKLDDADVVLLAPQV--A----YMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec---HHHHHhhcCCCCEEEECchH--H----HHHHHHHHHhhh
Confidence 3567766 33222 1223556777889998887654 33332 2478977774421 1 12333444 2 3
Q ss_pred CCCCEEEE
Q 031223 96 PTVPLFGV 103 (163)
Q Consensus 96 ~~~PvLGI 103 (163)
.++|+.-|
T Consensus 74 ~~ipv~~I 81 (95)
T TIGR00853 74 KGIPVEVI 81 (95)
T ss_pred cCCCEEEe
Confidence 46788765
No 309
>PRK13856 two-component response regulator VirG; Provisional
Probab=67.23 E-value=39 Score=25.61 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=43.4
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEEe
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGIC 104 (163)
+|++++........+...|+..|+.+..........+.+....+|.+++--. .+...+ .+...+++ ....|++-+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~l~~~i~~-~~~~pii~lt 79 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLN--LGREDGLEIVRSLAT-KSDVPIIIIS 79 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCcEEEEE
Confidence 7999987666677788889888887765432111112223346898887322 111111 23333443 2458888775
Q ss_pred h
Q 031223 105 M 105 (163)
Q Consensus 105 ~ 105 (163)
-
T Consensus 80 ~ 80 (241)
T PRK13856 80 G 80 (241)
T ss_pred C
Confidence 3
No 310
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.03 E-value=57 Score=28.19 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCH---HHH---------h---ccCCCEEEeCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV---EEL---------K---RKNPRGVLISPGPG 79 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~---~~~---------~---~~~~dgvvl~GG~~ 79 (163)
+-.+.+|+|+-.+-+- ....++|.. |+++.+.+...... .++ . ..++|.||+|+|-.
T Consensus 3 ~~~~~~v~v~G~G~sG-~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~ 74 (454)
T PRK01368 3 SHTKQKIGVFGLGKTG-ISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIP 74 (454)
T ss_pred CCCCCEEEEEeecHHH-HHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCC
Confidence 3345689999876432 246677774 98888775321111 111 0 02589999999853
No 311
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.97 E-value=39 Score=25.21 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=34.9
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
-.+.+|+||-.+...-..+.+.|.+.|+.+.+.......+.+.. .++|.||..=|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l-~~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT-KQADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH-hhCCEEEEcCC
Confidence 35578999998532344588999999998777754322222221 37897776333
No 312
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.78 E-value=25 Score=28.78 Aligned_cols=71 Identities=21% Similarity=0.194 Sum_probs=44.0
Q ss_pred ccCCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccC
Q 031223 4 AEAVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKN 68 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~ 68 (163)
+++-...++..++.++.. +..+++++|.-+ +| |..+-.++.++.|+.++.+...+ .+.+++ . ..+
T Consensus 10 A~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~ 89 (286)
T PRK14184 10 AATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPD 89 (286)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 334445667777777655 556777777444 22 45556677888999999886432 222322 1 236
Q ss_pred CCEEEe
Q 031223 69 PRGVLI 74 (163)
Q Consensus 69 ~dgvvl 74 (163)
.|||++
T Consensus 90 V~GIlv 95 (286)
T PRK14184 90 IDGILL 95 (286)
T ss_pred CceEEE
Confidence 799987
No 313
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=66.71 E-value=37 Score=27.64 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=41.7
Q ss_pred CCCeEEEEE--CCCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 23 ~~~~Ilvid--~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
...+|.++- ..+.|-. .+.+++++.|+.+.+...+. +.+ .+...++||+|+.+... ....+
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~-~~~~~~~~i~~l~~~~vDGiIi~~~~~-----~~~~~ 97 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG-NEETQMSQIENMINRGVDVLVIIPYNG-----QVLSN 97 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCh-----hhHHH
Confidence 355677772 3333433 35667788999998876532 221 12234899999976421 11123
Q ss_pred HHHHh-CCCCCEEEE
Q 031223 90 TVLEL-GPTVPLFGV 103 (163)
Q Consensus 90 ~i~~~-~~~~PvLGI 103 (163)
.+..+ .+++|++-+
T Consensus 98 ~l~~~~~~~iPvV~i 112 (330)
T PRK10355 98 VIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHCCCeEEEE
Confidence 33333 455777655
No 314
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.61 E-value=25 Score=28.81 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=42.3
Q ss_pred cCCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 5 EAVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
++-....++.++.++.. +..+++++|.-+ ++ |...-.++.++.|+.++.+...+ .+.+++ . ..+.
T Consensus 12 ~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V 91 (296)
T PRK14188 12 ADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAI 91 (296)
T ss_pred HHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 33345556667776654 455677777443 23 45556677888999988876432 232332 1 1367
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
+||++
T Consensus 92 ~GIlv 96 (296)
T PRK14188 92 HGILV 96 (296)
T ss_pred cEEEE
Confidence 89997
No 315
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=66.48 E-value=64 Score=28.12 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+++|+|+-.+-+- ...+++|.+.|+.+.+.+.
T Consensus 7 ~~kv~V~GLG~sG-~a~a~~L~~~G~~v~v~D~ 38 (448)
T COG0771 7 GKKVLVLGLGKSG-LAAARFLLKLGAEVTVSDD 38 (448)
T ss_pred CCEEEEEeccccc-HHHHHHHHHCCCeEEEEcC
Confidence 6789999986543 4688999999999988863
No 316
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=66.42 E-value=15 Score=30.27 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC----------------------CCCHHHHhccCCCEEEeCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND----------------------ELTVEELKRKNPRGVLISPGP 78 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~----------------------~~~~~~~~~~~~dgvvl~GG~ 78 (163)
+....+|+|+|++. .+.|.++|+++.++++. +.+++.+...+||.||+ ||+
T Consensus 55 pknPekVvv~D~ga------LD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIi-ggR 127 (320)
T COG4607 55 PKNPEKVVVLDLGA------LDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIII-GGR 127 (320)
T ss_pred cCCCceEEEecchh------hhhHHHhCCccccccCCCCccHHHHHhccCCccccCcccCCCHHHHHhcCCCEEEE-CcH
Confidence 34456899999852 45677888887666221 13345555568998888 544
Q ss_pred C
Q 031223 79 G 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 128 ~ 128 (320)
T COG4607 128 A 128 (320)
T ss_pred H
Confidence 3
No 317
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=66.33 E-value=47 Score=27.88 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=42.8
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCC----hHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~----~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG 77 (163)
++.+.+-+++.+. .|++||--... +...+...|++.|+++.++.-.. .+.+.+ ...++|.||-.||
T Consensus 17 l~~l~~~l~~~g~-~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 17 IEDIVDEVKRRGF-KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred HHHHHHHHHhcCC-CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4445555555543 36777732211 33457778888899888774211 222322 2348999996677
Q ss_pred CCCCCCChhH
Q 031223 78 PGAPQDSGIS 87 (163)
Q Consensus 78 ~~~~~d~~~~ 87 (163)
+++-|..+.
T Consensus 96 -GSviD~aKa 104 (379)
T TIGR02638 96 -GSPIDTAKA 104 (379)
T ss_pred -hHHHHHHHH
Confidence 556565443
No 318
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=66.28 E-value=45 Score=28.06 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=40.3
Q ss_pred hhHHhhhcCCCCCeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCC
Q 031223 13 LYLDDKKSKNNKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPG 79 (163)
Q Consensus 13 ~~~~~~~~~~~~~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~ 79 (163)
.+-+-++..+ .|++||--.. ++...+.+.|++.|+++.++.-.. .+..++ ...++|.||=.|| +
T Consensus 13 ~l~~~~~~~g--~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-G 89 (386)
T cd08191 13 QLPRLAARLG--SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-G 89 (386)
T ss_pred HHHHHHHHcC--CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-c
Confidence 3333344444 5777774221 233456777888899888774221 112211 2347999996677 5
Q ss_pred CCCCChhH
Q 031223 80 APQDSGIS 87 (163)
Q Consensus 80 ~~~d~~~~ 87 (163)
++-|..+.
T Consensus 90 S~iD~aK~ 97 (386)
T cd08191 90 SCIDLAKI 97 (386)
T ss_pred hHHHHHHH
Confidence 66665443
No 319
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=66.25 E-value=57 Score=25.54 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
.+.+.+++.|+.+.+..... +.+ .+...++||||+.+...+ ...+.++++ ..++|+..+
T Consensus 20 gi~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~~vdgiii~~~~~~-----~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 20 NFEAALKELGAEVIVQNANG-DPAKQISQIENMIAKGVDVLVIAPVDGE-----ALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCChh-----hHHHHHHHHHHCCCCEEEE
Confidence 36667778999998886542 221 122358999999764211 112334443 356787655
No 320
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=66.15 E-value=32 Score=27.33 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=54.1
Q ss_pred hhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----h
Q 031223 10 SKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----G 85 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~ 85 (163)
..+.+++...+.=..-..+++|.+ +....+++.|.+..- +.++-+.......+....-.-+++.||.-.+... .
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~G-TT~~~la~~L~~~~~-ltviTNsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~ 154 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAG-TTTLALARALPDDNN-LTVITNSLNIAAALLEKPNIEVILLGGTVRKKSGSFVGP 154 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCC-cHHHHHHHHhCcCCC-eEEEeCCHHHHHHHHhCCCCeEEEeCcEEEcCCCeEEcH
Confidence 344455555555455568899986 567778888875432 5666554111333333223335677886554432 2
Q ss_pred hHHHHHHHhCCCCCEEEEe
Q 031223 86 ISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 86 ~~~~~i~~~~~~~PvLGIC 104 (163)
...+.++.+.-++-++|.|
T Consensus 155 ~a~~~l~~~~~d~aFig~~ 173 (253)
T COG1349 155 LAEEFLRQFNFDKAFIGAD 173 (253)
T ss_pred HHHHHHHhCcccEEEEecc
Confidence 3467777776668888765
No 321
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=66.01 E-value=22 Score=27.64 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHHH------HhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~~------~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.++..+ ..... +...++||||+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 20 FAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 3567778899998877543 11111 22347999999764
No 322
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=66.00 E-value=53 Score=27.45 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=42.1
Q ss_pred hHhhHHhhhcCCCCCeEEEE-ECC---CChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvi-d~~---~~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG 77 (163)
+..+-+-++..+. .|++|| |.. .+....+...|++.|+++.++...+ .+.+.+ ...++|.||=.||
T Consensus 14 l~~l~~~l~~~~~-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 92 (376)
T cd08193 14 LARLGELLAALGA-KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG 92 (376)
T ss_pred HHHHHHHHHHcCC-CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444444444432 467777 321 1134457778888888887664211 122222 2348999997788
Q ss_pred CCCCCCChhH
Q 031223 78 PGAPQDSGIS 87 (163)
Q Consensus 78 ~~~~~d~~~~ 87 (163)
+++-|..+.
T Consensus 93 -Gs~iD~aK~ 101 (376)
T cd08193 93 -GSSMDVAKL 101 (376)
T ss_pred -chHHHHHHH
Confidence 666665543
No 323
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=65.58 E-value=33 Score=25.08 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=40.6
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
|+++|........+...|...|+.+............+....+|.+++--.... .+.-.....+++.....|++-+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPG-MDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHccCCCCcEEEEE
Confidence 467777655666788888888886544422111122233346898887322111 11112334444434567877764
No 324
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=65.35 E-value=77 Score=26.15 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=49.8
Q ss_pred hcCCCCCeEEEEECCCChHHH-HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-------hhHHHH
Q 031223 19 KSKNNKNPIIVIDNYDSFTYN-LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQT 90 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~-~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-------~~~~~~ 90 (163)
+...+..+|.|.+-...+.+. .++.|++.|++++++... .. ..--.++|.+++ |. ++.... +...=.
T Consensus 140 ~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds--a~-~~~~~~vd~Viv-Ga-d~I~~nG~lvnkiGT~~lA 214 (301)
T COG1184 140 ADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS--AV-GAFMSRVDKVLV-GA-DAILANGALVNKIGTSPLA 214 (301)
T ss_pred hhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech--HH-HHHHHhCCEEEE-Cc-cceecCCcEEeccchHHHH
Confidence 444444678888877776554 778999999999888632 11 221237888887 55 332222 211111
Q ss_pred HHHhCCCCCEEEEehHH
Q 031223 91 VLELGPTVPLFGVCMGL 107 (163)
Q Consensus 91 i~~~~~~~PvLGIC~G~ 107 (163)
+-.-+.++|++..|--+
T Consensus 215 ~~A~e~~~Pf~v~aesy 231 (301)
T COG1184 215 LAARELRVPFYVVAESY 231 (301)
T ss_pred HHHHHhCCCEEEEeeee
Confidence 11124669999888544
No 325
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=65.28 E-value=29 Score=30.10 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=55.7
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~Pv 100 (163)
...+|+++|-.......+.+.|...|+.+............+....||-|++.=. +...|.=.+...++.. .+.+|+
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~-mp~~dg~el~~~lr~~~~t~~ipi 209 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDAN-MPDMDGLELCTRLRQLERTRDIPI 209 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEecC-CCccCHHHHHHHHhcccccccccE
Confidence 4568999987655666788999999988776542211122233347998887433 2223332345555653 467999
Q ss_pred EEEeh----HHHHHHHHhCCe
Q 031223 101 FGVCM----GLQCIGEAFGGK 117 (163)
Q Consensus 101 LGIC~----G~QlLa~a~Gg~ 117 (163)
+.+-- -.+.-|-..|+.
T Consensus 210 i~~~~~~d~~~~~~Af~~G~~ 230 (435)
T COG3706 210 ILLSSKDDDELVVRAFELGVN 230 (435)
T ss_pred EEEecccchHHHHHHHHcCCc
Confidence 98753 223333334664
No 326
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=64.67 E-value=28 Score=32.47 Aligned_cols=79 Identities=10% Similarity=0.164 Sum_probs=47.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCC--C-CCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGP--T-VPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~--~-~Pv 100 (163)
.+|+|+|........+.+.|...|+.+.....-....+.+....||.|++--. .|... -...+.+++... . .|+
T Consensus 703 ~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvl~D~~--mp~~~g~~~~~~ir~~~~~~~~~pi 780 (968)
T TIGR02956 703 QRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDIN--LPDGDGVTLLQQLRAIYGAKNEVKF 780 (968)
T ss_pred cceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHHhCccccCCCeE
Confidence 47999987655666788889989998776532111123333457998877221 22222 234555665322 2 899
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+.+.-
T Consensus 781 i~lta 785 (968)
T TIGR02956 781 IAFSA 785 (968)
T ss_pred EEEEC
Confidence 88853
No 327
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=64.65 E-value=31 Score=27.50 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~G 76 (163)
...+.+.+++.|+.+.+...+.... +.+...++||||+.+
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4456677778888887765431111 112234789998865
No 328
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=64.42 E-value=31 Score=28.42 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=41.9
Q ss_pred CCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHHh--------ccCCC
Q 031223 6 AVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEELK--------RKNPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~~--------~~~~d 70 (163)
+-....+..++.++.. +..+++++|.-+ ++ |.....++.++.|+.++.+...+ .+.+++. ..+.+
T Consensus 20 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~ 99 (299)
T PLN02516 20 AIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVH 99 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3345566666666555 556677777444 23 45556677888999998886532 2333321 13678
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 100 GIlv 103 (299)
T PLN02516 100 GILV 103 (299)
T ss_pred eEEE
Confidence 9987
No 329
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=64.36 E-value=40 Score=23.00 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=41.9
Q ss_pred eEEEEECCCChH--HHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEE
Q 031223 26 PIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 26 ~Ilvid~~~~~~--~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvL 101 (163)
+|.++-.+.+.. ..+...+...|..+..+............ .+-|.+|+..-.+ ...+..+.++.+ +++.|++
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG---~t~~~~~~~~~a~~~g~~vi 78 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSG---ETDELLNLLPHLKRRGAPII 78 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCC---CCHHHHHHHHHHHHCCCeEE
Confidence 577777765542 23555666678777766432111111111 1335566543322 223345556654 5789999
Q ss_pred EEehH
Q 031223 102 GVCMG 106 (163)
Q Consensus 102 GIC~G 106 (163)
+|+-.
T Consensus 79 ~iT~~ 83 (128)
T cd05014 79 AITGN 83 (128)
T ss_pred EEeCC
Confidence 99964
No 330
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=64.13 E-value=50 Score=25.63 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=42.6
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC---CCHHHHh-ccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELK-RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~-~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~ 98 (163)
+.+|++|.........+.+.....|..+..-++-- .+. .+. ...||.||++.- ..+ ..++++. .-++
T Consensus 67 ~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~-~~~~~~~Pdliiv~dp----~~~---~~AI~EA~kl~I 138 (204)
T PRK04020 67 PEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNP-SLKGYIEPDVVVVTDP----RGD---AQAVKEAIEVGI 138 (204)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCc-chhccCCCCEEEEECC----ccc---HHHHHHHHHhCC
Confidence 56799997655455566666667776654332210 111 111 136899998542 222 3455663 4679
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|+.|||
T Consensus 139 P~Iaiv 144 (204)
T PRK04020 139 PVVALC 144 (204)
T ss_pred CEEEEE
Confidence 999999
No 331
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.98 E-value=64 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+... .+.+...++||+|+.++
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 20 GAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4667788889998777543211 11122347999999775
No 332
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=63.85 E-value=41 Score=28.74 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=37.7
Q ss_pred hcCCCCCeEEEEEC-CCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCC
Q 031223 19 KSKNNKNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (163)
Q Consensus 19 ~~~~~~~~Ilvid~-~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~ 78 (163)
.+...+ +|+|+-. -.+++.. +++-|.+.|..++++.....+.+++.. .+++|+++ |+|
T Consensus 242 ~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv-GsP 306 (388)
T COG0426 242 EGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVV-GSP 306 (388)
T ss_pred ccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEE-ecC
Confidence 444444 7888832 2245555 555566689999998866455666543 37999999 665
No 333
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=63.73 E-value=52 Score=27.56 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=38.2
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++||--..+ +...+.+.|++.|+++.++..- ..+.+.+ ...++|.||=.|| +++-|..+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 57888843222 3346778888889988777421 1223322 2348999997788 666666544
No 334
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=63.66 E-value=54 Score=23.72 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=41.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
..+|+|+|........+...+... ++.+.....+.. ....+....+|.+++--.. ...+.....+.+++.....|++
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvild~~l-~~~~g~~~~~~l~~~~~~~~ii 81 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDL-PGTDGFTFLKRIKQIQSTVKVL 81 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHhCCCCcEE
Confidence 467999988666666777888765 455432222211 1122233468888773221 1112223344455433457877
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 82 ~ls 84 (210)
T PRK09935 82 FLS 84 (210)
T ss_pred EEE
Confidence 664
No 335
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.38 E-value=28 Score=28.37 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCChhhHhhHHhhhcC-CCCCeEEEEECCC---C--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCC
Q 031223 6 AVPISKSLYLDDKKSK-NNKNPIIVIDNYD---S--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~Ilvid~~~---~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~d 70 (163)
.-....+..++.++.. +..+++++|.-++ + |..+..++.++.|++++.+...+ .+.+++ . ..+.+
T Consensus 12 ~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~ 91 (282)
T PRK14180 12 DLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVH 91 (282)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3344556666666654 4566777774442 2 45556677888999999886542 222222 1 23678
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 92 GIiv 95 (282)
T PRK14180 92 AILV 95 (282)
T ss_pred eEEE
Confidence 9997
No 336
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=63.18 E-value=41 Score=25.90 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+......+. +.+...++||+|+.+.
T Consensus 20 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 20 VKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5567778899988763211111 1222358999999763
No 337
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.80 E-value=54 Score=23.50 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=34.9
Q ss_pred CCCeEEEEEC----CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCC
Q 031223 23 NKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPG 77 (163)
Q Consensus 23 ~~~~Ilvid~----~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG 77 (163)
++.+|++--. ++--...+...|+..|+++..+..+ .+.+++. ..++|.|.+|--
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS~~ 63 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVSSL 63 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCc
Confidence 3456666622 2222334677889999999888765 4555543 358999999764
No 338
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=62.75 E-value=31 Score=33.16 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=46.5
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL 101 (163)
..++|+|||........+.+.|+..|+++..........+.+....+|.|++ .- ..+...+ .+.+.+++.....|++
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlil~-D~-~mp~~~g~~~~~~i~~~~~~~pii 1034 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLIT-DV-NMPNMDGFELTRKLREQNSSLPIW 1034 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEE-eC-CCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4468999987655666688889889988765532111122333346887776 22 1122222 3445555544568888
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
.+-
T Consensus 1035 ~lt 1037 (1197)
T PRK09959 1035 GLT 1037 (1197)
T ss_pred EEE
Confidence 763
No 339
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.75 E-value=70 Score=29.76 Aligned_cols=54 Identities=20% Similarity=0.022 Sum_probs=37.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhc--------------cCCCEEEeCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKR--------------KNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~--------------~~~dgvvl~GG~ 78 (163)
.+|+||-.+.+-...+++.|.+.|+.+...+..... .+++.. .++|.||+|+|-
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI 73 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSI 73 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCc
Confidence 469999988777777899999999998877532111 122211 157889998884
No 340
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=62.66 E-value=83 Score=26.15 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=37.6
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++||--... ....+.+.|++.|.++.++..- ..+.+.+ ...++|.||=.|| +++-|..+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 57888843222 2245778888889888876421 1222322 2358999997788 666665443
No 341
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.65 E-value=63 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 35566677788877765432111 1122346888888553
No 342
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=62.64 E-value=45 Score=27.55 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=42.4
Q ss_pred CeEEEEECCCC---hHHHHHHHHHHcCCEEEE--EeCCCCCHHHH-------hccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v--~~~~~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
.|++||--... +...+.+.|++.|+.+.. +..+ .+.+.+ ...++|.||=.|| +++-|..+.....
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia~~- 99 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGE-CTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVADY- 99 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCc-CCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHHHH-
Confidence 57777742111 233466677777877542 2222 223322 2347999998888 6777765544433
Q ss_pred HhCCCCCEEEEe
Q 031223 93 ELGPTVPLFGVC 104 (163)
Q Consensus 93 ~~~~~~PvLGIC 104 (163)
.++|+..|-
T Consensus 100 ---~~~P~iaIP 108 (351)
T cd08170 100 ---LGAPVVIVP 108 (351)
T ss_pred ---cCCCEEEeC
Confidence 357887765
No 343
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=62.56 E-value=50 Score=27.74 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCEEEEehHHHHH
Q 031223 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCI 110 (163)
Q Consensus 33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~PvLGIC~G~QlL 110 (163)
.+.|...+.+++.+.|..+++.....-.- +. +-.-.+...|-. .|...+.+.+++. .++.=..|+-+|.-+|
T Consensus 89 ~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~-~~---n~~p~~yh~G~t--~D~~~~l~~l~~~~~~r~~~avG~SLGgnmL 162 (345)
T COG0429 89 NSPYARGLMRALSRRGWLVVVFHFRGCSG-EA---NTSPRLYHSGET--EDIRFFLDWLKARFPPRPLYAVGFSLGGNML 162 (345)
T ss_pred cCHHHHHHHHHHHhcCCeEEEEecccccC-Cc---ccCcceecccch--hHHHHHHHHHHHhCCCCceEEEEecccHHHH
Confidence 34477778899999999888886531111 10 112244455521 2323345555553 4566677999999999
Q ss_pred HHHhCCe
Q 031223 111 GEAFGGK 117 (163)
Q Consensus 111 a~a~Gg~ 117 (163)
+.++|-+
T Consensus 163 a~ylgee 169 (345)
T COG0429 163 ANYLGEE 169 (345)
T ss_pred HHHHHhh
Confidence 9998744
No 344
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=62.43 E-value=14 Score=27.41 Aligned_cols=78 Identities=9% Similarity=0.137 Sum_probs=42.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
.+|+++|........+...|+..|+.+............+....+|.+++--.... .+.-...+.+++. ...|++-+-
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~lr~~-~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD-GDGIEFIRDLRQW-SAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC-CCHHHHHHHHHcC-CCCCEEEEE
Confidence 47999988666677788889888887654432111112222346888887322111 1111233444432 357877653
No 345
>PRK10651 transcriptional regulator NarL; Provisional
Probab=62.35 E-value=52 Score=23.79 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=42.8
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCC
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~ 97 (163)
+++...+|+++|........+.+.|... ++.+.....+.. ....+....+|.+++--.... .+.-...+.+++....
T Consensus 2 ~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~ 80 (216)
T PRK10651 2 SNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-MNGLETLDKLREKSLS 80 (216)
T ss_pred CCCcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCC
Confidence 3455678999987655566677777654 343322221100 112233346888877322111 1111234444444445
Q ss_pred CCEEEEeh
Q 031223 98 VPLFGVCM 105 (163)
Q Consensus 98 ~PvLGIC~ 105 (163)
.|++-++.
T Consensus 81 ~~vi~l~~ 88 (216)
T PRK10651 81 GRIVVFSV 88 (216)
T ss_pred CcEEEEeC
Confidence 78777754
No 346
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=62.27 E-value=38 Score=26.78 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=49.7
Q ss_pred hhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCC---h
Q 031223 10 SKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDS---G 85 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~---~ 85 (163)
.++.++....+.=..-..++||.+ +....++++|.... .+.++.+.......+.. .++. +++.||.-.+... +
T Consensus 78 ~K~~IA~~Aa~lI~~g~tIflD~G-tT~~~la~~L~~~~-~ltvvTnsl~i~~~l~~~~~~~-villGG~~~~~~~~~~G 154 (252)
T PRK10681 78 EKRRAAQLAATLVEPNQTLFFDCG-TTTPWIIEAIDNEL-PFTAVCYSLNTFLALQEKPHCR-AILCGGEFHASNAIFKP 154 (252)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECC-ccHHHHHHhcCCCC-CeEEEECCHHHHHHHhhCCCCE-EEEECcEEecCcceeeC
Confidence 344444444444344458899986 45556788886532 35566543111233332 2344 6677886544332 2
Q ss_pred -hHHHHHHHhCCCCCEEEE
Q 031223 86 -ISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 86 -~~~~~i~~~~~~~PvLGI 103 (163)
...+.+.++.-++-++|+
T Consensus 155 ~~~~~~l~~~~~D~afig~ 173 (252)
T PRK10681 155 LDFQQTLDNICPDIAFYSA 173 (252)
T ss_pred HHHHHHHHhhCCCEEEEeC
Confidence 246777777666777773
No 347
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.14 E-value=89 Score=26.59 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC--HHHHh-----------------ccCCCEEEeCCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK-----------------RKNPRGVLISPGPG 79 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~-----------------~~~~dgvvl~GG~~ 79 (163)
+++|+|+..+.+-. ...+.|.+.|+.+.+....... ...+. ..++|.||.|+|-.
T Consensus 5 ~~~~~v~G~g~~G~-~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGLGGTGI-SMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 35789998764333 3588888899988777543211 11111 02688999998853
No 348
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=62.02 E-value=10 Score=29.51 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCC---CHHHHhc-cCCCEEEeCCCCCCCC------C-----ChhHHHHHHHh-C--CCCCE
Q 031223 39 NLCQYMGELGYHFEVYRNDEL---TVEELKR-KNPRGVLISPGPGAPQ------D-----SGISLQTVLEL-G--PTVPL 100 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~---~~~~~~~-~~~dgvvl~GG~~~~~------d-----~~~~~~~i~~~-~--~~~Pv 100 (163)
.+..+|+.-+++++..+..+. .+.+++. ..||+||||-=-.+-. . .+.-.++|+++ + .+.=+
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 477888888888887764321 1122222 3799999976322211 1 12236777774 3 34445
Q ss_pred EEEehHHHHH
Q 031223 101 FGVCMGLQCI 110 (163)
Q Consensus 101 LGIC~G~QlL 110 (163)
+|=-+.+|=|
T Consensus 116 iGGY~SF~GI 125 (254)
T COG5426 116 IGGYLSFQGI 125 (254)
T ss_pred EccEEEEeee
Confidence 5555555544
No 349
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=61.90 E-value=6.7 Score=27.20 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=30.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISP 76 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~G 76 (163)
.||||++.+ ...-.+.+.++++|+++..+..+..+ .... ...|-+++.|
T Consensus 3 kkvLIanrG-eia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~--~~ad~~~~~~ 52 (110)
T PF00289_consen 3 KKVLIANRG-EIAVRIIRALRELGIETVAVNSNPDTVSTHV--DMADEAYFEP 52 (110)
T ss_dssp SEEEESS-H-HHHHHHHHHHHHTTSEEEEEEEGGGTTGHHH--HHSSEEEEEE
T ss_pred CEEEEECCC-HHHHHHHHHHHHhCCcceeccCchhcccccc--cccccceecC
Confidence 578888764 46777999999999998877543111 1122 2456666555
No 350
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=61.88 E-value=50 Score=22.79 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=27.3
Q ss_pred CChHHHHHHH----HHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCC
Q 031223 34 DSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (163)
Q Consensus 34 ~~~~~~~~~~----l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~ 78 (163)
.+++..++++ +.+.|+++++.+..+.+..++. ++|.||+ |.|
T Consensus 9 tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~--~~d~iil-gsp 54 (140)
T TIGR01753 9 TGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLL--SYDAVLL-GCS 54 (140)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHh--cCCEEEE-EcC
Confidence 3456655554 4556888888876544455554 6899988 544
No 351
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=61.72 E-value=51 Score=25.41 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC---CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (163)
+.+|+++.........+.+..+..|.....-++-- .+...-.-..||.||+.. +.. -..++++. .-++|
T Consensus 61 ~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~d----p~~---~~~Av~EA~~l~IP 133 (196)
T TIGR01012 61 PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTD----PRA---DHQALKEASEVGIP 133 (196)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEEC----Ccc---ccHHHHHHHHcCCC
Confidence 55799998765455556666666776554322210 111111113588898853 222 23456664 56799
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
+.|||-
T Consensus 134 ~Iai~D 139 (196)
T TIGR01012 134 IVALCD 139 (196)
T ss_pred EEEEee
Confidence 999995
No 352
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.68 E-value=36 Score=27.79 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=41.1
Q ss_pred CCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCC
Q 031223 6 AVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~d 70 (163)
+-....++-+++++.. +..+++++|.-+ ++ |...-.+..++.|+.++.+...+ .+.+++ . +.+.+
T Consensus 13 ~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~ 92 (284)
T PRK14179 13 KMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWH 92 (284)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3344455666666544 445677777444 22 45556677888999999886542 222322 1 23679
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 93 GIiv 96 (284)
T PRK14179 93 GILV 96 (284)
T ss_pred EEEE
Confidence 9997
No 353
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=61.63 E-value=47 Score=26.61 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCH-HHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~-~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~ 98 (163)
....|++|.........+.+.....|..+..-+.--.++ ..+. -..||.||++. +... ...|++. .-++
T Consensus 70 ~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~D----p~~d---~qAI~EA~~lnI 142 (249)
T PTZ00254 70 NPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTD----PRTD---HQAIREASYVNI 142 (249)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeC----CCcc---hHHHHHHHHhCC
Confidence 345688887654444455565566776654322210111 0111 13688888864 2222 3455653 4579
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|+.|+|
T Consensus 143 PvIal~ 148 (249)
T PTZ00254 143 PVIALC 148 (249)
T ss_pred CEEEEe
Confidence 999999
No 354
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.60 E-value=33 Score=28.23 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=42.2
Q ss_pred cCCChhhHhhHHhhhcC-CCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCC
Q 031223 5 EAVPISKSLYLDDKKSK-NNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNP 69 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~ 69 (163)
++-....++.++..+.. +..+++++|.-++. |...-.++.++.|++++.+...+ .+.+++ . ..+.
T Consensus 12 ~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 91 (297)
T PRK14186 12 AEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERV 91 (297)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 33344556666666554 55567777754432 45556677888999999886532 232222 1 1357
Q ss_pred CEEEe
Q 031223 70 RGVLI 74 (163)
Q Consensus 70 dgvvl 74 (163)
+||++
T Consensus 92 ~GIiv 96 (297)
T PRK14186 92 DGILL 96 (297)
T ss_pred CEEEE
Confidence 99997
No 355
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=61.60 E-value=98 Score=26.26 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=50.2
Q ss_pred HHHHHHHHHHc-CCEEEEEeCCCCCHHHH---hccCCCEEEeCCCCCCCCCCh-h---HHHHHHH-hCCCCCEE---EEe
Q 031223 37 TYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-I---SLQTVLE-LGPTVPLF---GVC 104 (163)
Q Consensus 37 ~~~~~~~l~~~-G~~~~v~~~~~~~~~~~---~~~~~dgvvl~GG~~~~~d~~-~---~~~~i~~-~~~~~PvL---GIC 104 (163)
+..-.+||++. +..+.+--. .+.++. ....+|+|+++|--+...|.. . ....+++ +..++||+ ||.
T Consensus 212 tW~di~wlr~~~~~PiivKgV--~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr 289 (367)
T PLN02493 212 SWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR 289 (367)
T ss_pred CHHHHHHHHhccCCCEEeecC--CCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence 34446777763 343332222 233332 234899999988655433332 1 2233333 45679998 999
Q ss_pred hHHHHH-HHHhCCeeeeCC
Q 031223 105 MGLQCI-GEAFGGKIVRSP 122 (163)
Q Consensus 105 ~G~QlL-a~a~Gg~v~~~~ 122 (163)
.|..++ |.++|++..-..
T Consensus 290 ~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 290 RGTDVFKALALGASGIFIG 308 (367)
T ss_pred cHHHHHHHHHcCCCEEEEc
Confidence 999999 779999866543
No 356
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=61.28 E-value=52 Score=27.05 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=43.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCC-CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~-~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
+.++|+|+|....+...+.+.|... ++.+.....+. .....+....+|.+++--. ....+.-...+.+++... .|+
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~~DlVllD~~-mp~~dgle~l~~i~~~~~-~pi 79 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNPDVITLDVE-MPVMDGLDALEKIMRLRP-TPV 79 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhCCCEEEEeCC-CCCCChHHHHHHHHHhCC-CCE
Confidence 4578999997655666677888765 66654332221 1122233346887776221 111121123344444333 888
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-++-
T Consensus 80 Ivls~ 84 (354)
T PRK00742 80 VMVSS 84 (354)
T ss_pred EEEec
Confidence 88873
No 357
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=61.15 E-value=62 Score=26.89 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=42.6
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCC----hHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~----~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG 77 (163)
|+.+.+-++..+. .+++||--... +...+.+.|++.|.++.++... ..+.+.+ ...++|.||=.||
T Consensus 11 l~~l~~~l~~~~~-~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 11 IEKLGEEIKNLGG-RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred HHHHHHHHHHcCC-CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4555555555433 46777732222 3346778888888887766421 1223322 2347999996677
Q ss_pred CCCCCCChhH
Q 031223 78 PGAPQDSGIS 87 (163)
Q Consensus 78 ~~~~~d~~~~ 87 (163)
+++-|..+.
T Consensus 90 -Gs~~D~AK~ 98 (370)
T cd08551 90 -GSVLDTAKA 98 (370)
T ss_pred -chHHHHHHH
Confidence 556665443
No 358
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=61.13 E-value=36 Score=28.82 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCC
Q 031223 6 AVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~d 70 (163)
+-....+.-+++++.. +..+++++|.-+ ++ |...-.++.++.|++.+.+...+ .+.+++ . +.+.|
T Consensus 84 ~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~ 163 (364)
T PLN02616 84 KIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVH 163 (364)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCC
Confidence 3445566666666655 555677777443 22 55566778888999988886432 222222 1 13678
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 164 GIlV 167 (364)
T PLN02616 164 GILV 167 (364)
T ss_pred EEEE
Confidence 9997
No 359
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.12 E-value=41 Score=25.78 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+.... +.+...++||||+.+.
T Consensus 23 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 23 AIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35567777899888776442211 1122347999999663
No 360
>PRK09701 D-allose transporter subunit; Provisional
Probab=61.11 E-value=83 Score=25.10 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=30.4
Q ss_pred CeEEEE--ECCCChHHH----HHHHHHHcCCEEEEEeCC-CCCH-------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvi--d~~~~~~~~----~~~~l~~~G~~~~v~~~~-~~~~-------~~~~~~~~dgvvl~GG 77 (163)
..|.+| +..+.|-.. +.+.+++.|+.+.++... ..+. +.+...++||+||.+.
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 457776 333344333 556677789988876321 1111 1222347999999865
No 361
>PRK11914 diacylglycerol kinase; Reviewed
Probab=60.71 E-value=47 Score=26.77 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=33.1
Q ss_pred CeEEEEECCCC---h----HHHHHHHHHHcCCEEEEEeCCCC-CHHHH----hccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDS---F----TYNLCQYMGELGYHFEVYRNDEL-TVEEL----KRKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~---~----~~~~~~~l~~~G~~~~v~~~~~~-~~~~~----~~~~~dgvvl~GG~~~ 80 (163)
+++++|-|-.+ . ...+.+.|++.|+++.++..... ....+ ...++|.||+.||-++
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT 76 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV 76 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 46777755211 1 22466788889998876654311 11122 2246899999999765
No 362
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=60.57 E-value=75 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=22.7
Q ss_pred HHHHHHHHc-CCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGEL-GYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~-G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
.+.+.+.+. |+.+.+...+... .+.+...++||||+.+.
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 20 EIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 355666665 8888776543111 11122357999999764
No 363
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=60.19 E-value=62 Score=26.21 Aligned_cols=88 Identities=11% Similarity=0.200 Sum_probs=56.1
Q ss_pred eEEEEECCCChH----HHHHHHHHHcCCE-EEEEeCC--C-CCHHHHh--ccCCCEEEeCCCCCCCC----CChhHHHHH
Q 031223 26 PIIVIDNYDSFT----YNLCQYMGELGYH-FEVYRND--E-LTVEELK--RKNPRGVLISPGPGAPQ----DSGISLQTV 91 (163)
Q Consensus 26 ~Ilvid~~~~~~----~~~~~~l~~~G~~-~~v~~~~--~-~~~~~~~--~~~~dgvvl~GG~~~~~----d~~~~~~~i 91 (163)
.|.|+...+..+ +++.+.++..|++ +.++... + .+.+++. -.+++||+++||-.... ....+++.|
T Consensus 54 ~i~I~paas~ep~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~i 133 (293)
T COG4242 54 YIVIIPAASREPRAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAI 133 (293)
T ss_pred EEEEEecCccChhhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHH
Confidence 677776654433 3456667777764 5555321 1 1222222 14899999999966432 223567788
Q ss_pred HH-hCCCCCEEEEehHHHHHHHH
Q 031223 92 LE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 92 ~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
++ +.+++-+-|..-|+-+|...
T Consensus 134 r~r~r~G~avgGTSAGAavM~~~ 156 (293)
T COG4242 134 RQRVRRGIAVGGTSAGAAVMSDH 156 (293)
T ss_pred HHHHhcCceecccccchhhcCCc
Confidence 87 67889999999999888764
No 364
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.06 E-value=22 Score=24.15 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 77 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG 77 (163)
...+...|++.|+++..+..+ .+.+++ ...++|.|.+|..
T Consensus 17 l~~la~~l~~~G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDAN-VPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHCCCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEcc
Confidence 335788899999999988765 232333 3458999999663
No 365
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=59.84 E-value=62 Score=27.25 Aligned_cols=55 Identities=7% Similarity=0.189 Sum_probs=33.5
Q ss_pred CCCeEEEEE-CCCChHHHHHHH----HH--HcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCC
Q 031223 23 NKNPIIVID-NYDSFTYNLCQY----MG--ELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (163)
Q Consensus 23 ~~~~Ilvid-~~~~~~~~~~~~----l~--~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~ 78 (163)
...+|+|+= -..+++..++++ ++ +.|+++++++..+.+.+++.. .++|+||+ |+|
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~-Gsp 309 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILV-GSS 309 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-ECC
Confidence 345677772 223456655554 44 457788888765455555432 36999999 554
No 366
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=59.68 E-value=57 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+........ +.+...++||||+.+.
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 20 GIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 35567777888887665431111 1122347899999764
No 367
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.59 E-value=35 Score=27.74 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=42.0
Q ss_pred CCChhhHhhHHhhhcC-CCCCeEEEEECCC---C--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH-------hcc-CCC
Q 031223 6 AVPISKSLYLDDKKSK-NNKNPIIVIDNYD---S--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL-------KRK-NPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~Ilvid~~~---~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~-------~~~-~~d 70 (163)
+-....+..++.++.. +..+++++|.-++ | |.....+++++.|++.+.++..+ .+.+++ ... +++
T Consensus 14 ~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~ 93 (283)
T PRK14192 14 QIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVH 93 (283)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3344556666666554 4556777774442 2 44456678888999998887631 232332 122 588
Q ss_pred EEEeC
Q 031223 71 GVLIS 75 (163)
Q Consensus 71 gvvl~ 75 (163)
|+++.
T Consensus 94 Gi~Vq 98 (283)
T PRK14192 94 GILLQ 98 (283)
T ss_pred EEEEe
Confidence 98883
No 368
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=59.52 E-value=69 Score=27.16 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=42.6
Q ss_pred hHhhHHhhhcCCCCCeEEEEECC----CChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~----~~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG 77 (163)
++.+-+-++..+. .+++|+--. .++...+.+.|++.|+++.++..-. .+.+.+ ...++|.||=.||
T Consensus 37 ~~~l~~~~~~~g~-~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG 115 (395)
T PRK15454 37 VSSCGQQAQTRGL-KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG 115 (395)
T ss_pred HHHHHHHHHhcCC-CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 3444444454443 466766321 1234557888999999888773211 222322 2358999997788
Q ss_pred CCCCCCChhH
Q 031223 78 PGAPQDSGIS 87 (163)
Q Consensus 78 ~~~~~d~~~~ 87 (163)
+++-|..+.
T Consensus 116 -GS~iD~AKa 124 (395)
T PRK15454 116 -GSVLDAAKA 124 (395)
T ss_pred -hHHHHHHHH
Confidence 566555443
No 369
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=59.46 E-value=30 Score=23.17 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=47.5
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-CCHHHHhcc-CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~~~~-~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~P 99 (163)
+...+|+++|........+.+.|...|+.+....... ...+.+... ++|.+++--. ....+.-...+.+++.....|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~-mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDIN-MPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCCCC
Confidence 3557899999755556678888899997665553221 112223333 3898776322 111122233444554435688
Q ss_pred EEEEehHHHHH
Q 031223 100 LFGVCMGLQCI 110 (163)
Q Consensus 100 vLGIC~G~QlL 110 (163)
+ -++-|....
T Consensus 82 v-v~~t~~~~~ 91 (130)
T COG0784 82 V-ILLTAYADE 91 (130)
T ss_pred E-EEEEcCcCH
Confidence 5 555554433
No 370
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.28 E-value=59 Score=24.91 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=20.1
Q ss_pred HHHHHHH--cCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGE--LGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~--~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+++++ .|+.+.+...+ .+. +.+...++||+|+.+.
T Consensus 21 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 21 AEAAAKKLNPGVKVTVVSAD-YDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred HHHHHHHhCCCeEEEEccCC-CCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5567777 55555554332 121 1122347899998653
No 371
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=59.21 E-value=54 Score=22.65 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=29.8
Q ss_pred eEEEE---ECCCChHHHHHHHHHHcCCEEEEEeCCC---------CCHHHHhccCCCEEEeCCC
Q 031223 26 PIIVI---DNYDSFTYNLCQYMGELGYHFEVYRNDE---------LTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 26 ~Ilvi---d~~~~~~~~~~~~l~~~G~~~~v~~~~~---------~~~~~~~~~~~dgvvl~GG 77 (163)
+|+|| ++.+.+-+.+.+.|.+.|+++..+.+.. .++.+. +..+|.+++.-.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~~ 64 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCVP 64 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCC-CCCCCEEEEEcC
Confidence 57888 3345678889999999998877775532 122221 246777776433
No 372
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.20 E-value=64 Score=26.37 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCCE
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPRG 71 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~dg 71 (163)
+-....++.++.++..+..+++++|.-++. |...-.++.++.|+.++.+...+ .+.+++ . +.+.||
T Consensus 13 ~i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~G 92 (284)
T PRK14170 13 EIQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHG 92 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCe
Confidence 334455666777666666677888855433 44456667788999999876542 222222 1 236899
Q ss_pred EEe
Q 031223 72 VLI 74 (163)
Q Consensus 72 vvl 74 (163)
|++
T Consensus 93 Iiv 95 (284)
T PRK14170 93 ILV 95 (284)
T ss_pred EEE
Confidence 997
No 373
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.14 E-value=37 Score=26.49 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
..+.+.+++.|+.+.+...+. ..+.+...++||+|+.+.
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-~~~~l~~~~vdgiIi~~~ 65 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-ADSPLDALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-chhhhhccCcCeEEEecC
Confidence 346677888899888776531 223344458999998653
No 374
>PRK13337 putative lipid kinase; Reviewed
Probab=59.14 E-value=94 Score=25.06 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=26.4
Q ss_pred HHHHHHHcCCEEEEEeCCC-CCHHHH----hccCCCEEEeCCCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGA 80 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~-~~~~~~----~~~~~dgvvl~GG~~~ 80 (163)
+.+.|++.|.+++++.... ....++ ...++|.||+.||-++
T Consensus 24 ~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 69 (304)
T PRK13337 24 VLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGT 69 (304)
T ss_pred HHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCH
Confidence 5667888998877664321 222222 2236899999999775
No 375
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=59.08 E-value=34 Score=28.79 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=40.4
Q ss_pred ChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCCEE
Q 031223 8 PISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPRGV 72 (163)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~dgv 72 (163)
....+.-+++++.. +..+++++|.-+ ++ |..+-.++.++.|++++.+...+ .+.+++ . +.+.|||
T Consensus 69 ~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GI 148 (345)
T PLN02897 69 RTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGI 148 (345)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 34455556666554 555667777443 22 45556677888999999887542 222222 1 2368999
Q ss_pred Ee
Q 031223 73 LI 74 (163)
Q Consensus 73 vl 74 (163)
++
T Consensus 149 lV 150 (345)
T PLN02897 149 LV 150 (345)
T ss_pred EE
Confidence 87
No 376
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=59.02 E-value=60 Score=25.53 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCeEEEE--ECCCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvi--d~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+..|.+| +..+.|-. .+.+.+++.|+.+.+.... .+.+ .+...++||+|+.+.
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~-~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ-NNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3456666 22333433 3556777899998876542 1111 122347999999653
No 377
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.01 E-value=72 Score=24.28 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+++.+...+.... ..+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 20 AMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 36667777899988765431111 1122358999999653
No 378
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=58.73 E-value=66 Score=25.76 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=30.3
Q ss_pred CeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEe
Q 031223 25 NPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLI 74 (163)
Q Consensus 25 ~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl 74 (163)
|||+|+=-+.|. ...+.++|++.|++++.+..+......+.. .++|.++.
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 468888443332 224888999999999888654211222221 26887774
No 379
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=58.69 E-value=58 Score=25.76 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=45.2
Q ss_pred HhhHHhhhcC--CCCCeEEEEECCCCh------------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 12 SLYLDDKKSK--NNKNPIIVIDNYDSF------------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 12 ~~~~~~~~~~--~~~~~Ilvid~~~~~------------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
..+.+.++.. +...+|.++.-.+.. ...+.+.|+.. +.+..+... .+++ +.++|.+|| .|
T Consensus 132 ~~lt~aI~~v~~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---~~~I-P~~~d~Lvi-~~ 205 (271)
T PF09822_consen 132 YELTSAIRRVTSDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---NEEI-PDDADVLVI-AG 205 (271)
T ss_pred HHHHHHHHHHhcccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---cccc-CCCCCEEEE-EC
Confidence 3444444332 344678888533222 33477788877 777666542 3455 348999998 55
Q ss_pred CCCCCCChhHHHHHHH-hCCCCCE
Q 031223 78 PGAPQDSGISLQTVLE-LGPTVPL 100 (163)
Q Consensus 78 ~~~~~d~~~~~~~i~~-~~~~~Pv 100 (163)
|..+....+ ...|.+ +.++-++
T Consensus 206 P~~~ls~~e-~~~l~~yl~~GG~l 228 (271)
T PF09822_consen 206 PKTDLSEEE-LYALDQYLMNGGKL 228 (271)
T ss_pred CCCCCCHHH-HHHHHHHHHcCCeE
Confidence 555444433 344454 3454553
No 380
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.66 E-value=63 Score=25.16 Aligned_cols=38 Identities=8% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+.... .+.+ .+...++||+|+.+.
T Consensus 21 gi~~~a~~~gy~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 21 GVREAAKAIGWNLRILDGR-GSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHcCcEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3557778889988776443 1211 122358999999864
No 381
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.58 E-value=43 Score=27.35 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=41.2
Q ss_pred CCChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCC
Q 031223 6 AVPISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~d 70 (163)
+-....+..++.++.. +..+++++|.-+ ++ |...-.++.++.|+.++.+...+ .+.+++ . +.+.+
T Consensus 12 ~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~ 91 (285)
T PRK14191 12 KIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNID 91 (285)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3344555666666533 455677777444 23 45556677888999999886542 222222 1 13578
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 92 GIlv 95 (285)
T PRK14191 92 GILV 95 (285)
T ss_pred EEEE
Confidence 9987
No 382
>PRK09581 pleD response regulator PleD; Reviewed
Probab=58.51 E-value=52 Score=27.24 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=42.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh--CCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL--GPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~--~~~~PvL 101 (163)
.+|++++........+.+.|...|+.+............+....+|.+|+--. .+. +...+.+.+++. ...+|++
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVM--MPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCEE
Confidence 47999997655666788888877877664432111122233346888777222 111 112334555542 2357877
Q ss_pred EE
Q 031223 102 GV 103 (163)
Q Consensus 102 GI 103 (163)
.+
T Consensus 81 ~~ 82 (457)
T PRK09581 81 MV 82 (457)
T ss_pred EE
Confidence 66
No 383
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.41 E-value=72 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+..+. +.+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 20 AVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45667777888887765432111 1122346899998764
No 384
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=58.39 E-value=71 Score=24.18 Aligned_cols=53 Identities=9% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEe
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLI 74 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl 74 (163)
.+.++|+|+|....+...+...|... ++.+.....+.. ....+....+|.+|+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvll 56 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILL 56 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 44578999998665666777888753 664433322211 122333346898887
No 385
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=58.35 E-value=52 Score=25.99 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=22.1
Q ss_pred HHHHHHHcCCEEEEE-eCCCCCHH-------HHhccCCCEEEeCC
Q 031223 40 LCQYMGELGYHFEVY-RNDELTVE-------ELKRKNPRGVLISP 76 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~-~~~~~~~~-------~~~~~~~dgvvl~G 76 (163)
+.+.+++.|+.+.++ +.+ .+.+ .+...++||||+.+
T Consensus 21 i~~~a~~~g~~v~~~~~~~-~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 21 AKEAAKELGVDAIYVGPTT-ADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHhCCeEEEECCCC-CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 556677789988875 332 1211 12234799999975
No 386
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=58.18 E-value=37 Score=26.29 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=23.7
Q ss_pred HHHHHHHcCCEEEEEeCCC-CCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~-~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+...+. .+. +.+...++||||+.+.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 21 MVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5567778899988875321 111 1122358999999754
No 387
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.11 E-value=77 Score=24.10 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=22.8
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 21 i~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 21 MERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5566777888887765432111 1222346899998754
No 388
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=58.06 E-value=55 Score=27.29 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=46.1
Q ss_pred hhHHhhhcCCCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCC-CCCHHHH-------hccCCCEEEeCCCCCCC
Q 031223 13 LYLDDKKSKNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAP 81 (163)
Q Consensus 13 ~~~~~~~~~~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~-~~~~~~~-------~~~~~dgvvl~GG~~~~ 81 (163)
.+.+-++..+ .|++||--.... ...+.+.|++.|.++...... +.+.+.+ ...++|.||=.|| +++
T Consensus 20 ~l~~~l~~~g--~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv 96 (366)
T PRK09423 20 RLGEYLKPLG--KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKT 96 (366)
T ss_pred HHHHHHHHcC--CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHH
Confidence 3333344444 577777422222 233556677777765322211 1222222 2347899997777 666
Q ss_pred CCChhHHHHHHHhCCCCCEEEEeh
Q 031223 82 QDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 82 ~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
.|..+..... .++|+..|.=
T Consensus 97 ~D~aK~iA~~----~~~p~i~IPT 116 (366)
T PRK09423 97 LDTAKAVADY----LGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHH----cCCCEEEeCC
Confidence 6665544432 3589888875
No 389
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=57.99 E-value=47 Score=24.37 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=34.6
Q ss_pred CEEEeCCCCCCCC-CC-hhH-HHHHHHh-CCCCCEEEEehH--------HHHHHHHhCCeeeeCC
Q 031223 70 RGVLISPGPGAPQ-DS-GIS-LQTVLEL-GPTVPLFGVCMG--------LQCIGEAFGGKIVRSP 122 (163)
Q Consensus 70 dgvvl~GG~~~~~-d~-~~~-~~~i~~~-~~~~PvLGIC~G--------~QlLa~a~Gg~v~~~~ 122 (163)
-.|+|+-|..+.. +. ... .+..+++ +.++++..|+.| ++-||.+-||+....+
T Consensus 101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~ 165 (178)
T cd01451 101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLP 165 (178)
T ss_pred EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcC
Confidence 3566787755432 11 112 3444444 567999999987 5788888899887765
No 390
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=57.95 E-value=37 Score=26.69 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCC----hhHH
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDS----GISL 88 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~----~~~~ 88 (163)
++......=..-..++||.+ +....+.+.|.+. .+.++-++......+.. .+.+ +++.||.-.+... ....
T Consensus 83 IA~~Aa~lI~~gd~Ifld~G-tT~~~l~~~L~~~--~ltVvTNs~~ia~~l~~~~~~~-vil~GG~~~~~~~~~~G~~a~ 158 (240)
T PRK10411 83 IAREALAWIEEGMVIALDAS-STCWYLARQLPDI--NIQVFTNSHPICQELGKRERIQ-LISSGGTLERKYGCYVNPSLI 158 (240)
T ss_pred HHHHHHHhCCCCCEEEEcCc-HHHHHHHHhhCCC--CeEEEeCCHHHHHHHhcCCCCE-EEEECCEEeCCCCceECHHHH
Confidence 33333333333458889975 4566788888754 46666544111233332 2343 6777885443322 2346
Q ss_pred HHHHHhCCCCCEEEEe
Q 031223 89 QTVLELGPTVPLFGVC 104 (163)
Q Consensus 89 ~~i~~~~~~~PvLGIC 104 (163)
+.++++.-++-++|.|
T Consensus 159 ~~l~~~~~d~afis~~ 174 (240)
T PRK10411 159 SQLKSLEIDLFIFSCE 174 (240)
T ss_pred HHHHhcCCCEEEEece
Confidence 7777776667777755
No 391
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.79 E-value=42 Score=27.53 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=40.5
Q ss_pred ChhhHhhHHhhhcC-CCCCeEEEEECC---CC--hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccCCCEE
Q 031223 8 PISKSLYLDDKKSK-NNKNPIIVIDNY---DS--FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKNPRGV 72 (163)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~Ilvid~~---~~--~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~~dgv 72 (163)
....++.++.++.. +..+++++|.-+ ++ |...-.++.++.|++++.+...+ .+.+++ . ..+.+||
T Consensus 14 ~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 93 (295)
T PRK14174 14 KNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGI 93 (295)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 34455666666544 445677777443 22 45556677888999999887542 222222 1 1367899
Q ss_pred Ee
Q 031223 73 LI 74 (163)
Q Consensus 73 vl 74 (163)
++
T Consensus 94 lv 95 (295)
T PRK14174 94 LV 95 (295)
T ss_pred EE
Confidence 87
No 392
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=57.74 E-value=68 Score=29.35 Aligned_cols=44 Identities=16% Similarity=-0.084 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h---ccCCCEEEeCCCCC
Q 031223 36 FTYNLCQYMGELGYHFEVYRNDELTVEEL----K---RKNPRGVLISPGPG 79 (163)
Q Consensus 36 ~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~---~~~~dgvvl~GG~~ 79 (163)
+...+..+|++.|+++..+..-..+.+.+ . ..++|.||++||.+
T Consensus 210 N~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 210 NRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 34568888999999876543211122222 1 12689999999954
No 393
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=57.73 E-value=75 Score=27.85 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=41.9
Q ss_pred hHhhHHhh--hcCCCCCeEEEEECCCChHHHHHH-HHHHcCCEEE-EEeCCCC--CHHHHhccCCCEEEeCCCCC
Q 031223 11 KSLYLDDK--KSKNNKNPIIVIDNYDSFTYNLCQ-YMGELGYHFE-VYRNDEL--TVEELKRKNPRGVLISPGPG 79 (163)
Q Consensus 11 ~~~~~~~~--~~~~~~~~Ilvid~~~~~~~~~~~-~l~~~G~~~~-v~~~~~~--~~~~~~~~~~dgvvl~GG~~ 79 (163)
|+++++.+ -|..-+.+++++-.-.+.+..-.+ +....|+.+. ++.++.. .++++...+||.|+|.||-+
T Consensus 57 ~~~~~~~~acSSAaGGLkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtD 131 (463)
T TIGR01319 57 NSGEVAKKACSSAAGGLAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTD 131 (463)
T ss_pred ccccceEEEEcccCCChheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcC
Confidence 55555544 444455888888776565544333 3334677654 3544321 24556667899999999964
No 394
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.70 E-value=36 Score=26.54 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCEEEEEeCCC--CCHHHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~--~~~~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+. .....+...++||+|+.+.
T Consensus 25 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 25 GVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 35567777898888776431 0112233457999998765
No 395
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=57.62 E-value=53 Score=25.25 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHHH----HhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTVEE----LKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~~----~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.++..+...... +...++||||+.+.
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 666777889998887654211112 22347999999764
No 396
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=57.19 E-value=55 Score=30.20 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh--CCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL--GPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~--~~~~Pv 100 (163)
.++|+|+|........+.+.|...|+.+..........+.+....||.|++--. .|. +.-...+.+++. ....|+
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~~dlil~D~~--mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDIQ--MPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCcHHHHHHHHHhcccCCCCCE
Confidence 468999987655666688888888988766542211122333347898877221 122 222345556653 356899
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+.+-
T Consensus 745 i~lt 748 (919)
T PRK11107 745 IAVT 748 (919)
T ss_pred EEEe
Confidence 8874
No 397
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=57.19 E-value=1.2e+02 Score=25.95 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHc-CCEEEEEeCCCCCHHHHh---ccCCCEEEeCCCCCCCCCCh----hHHHHHHH-hCCCCCEE---EE
Q 031223 36 FTYNLCQYMGEL-GYHFEVYRNDELTVEELK---RKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLF---GV 103 (163)
Q Consensus 36 ~~~~~~~~l~~~-G~~~~v~~~~~~~~~~~~---~~~~dgvvl~GG~~~~~d~~----~~~~~i~~-~~~~~PvL---GI 103 (163)
.+..-.++|++. +..+.+-.. .+.++.. ...+|+|++++..+...|.. .....+++ +..++|++ ||
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV--~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGI 317 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGI--LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGV 317 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecC--CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCc
Confidence 444556677663 555544322 2344332 35899999987655444332 12333433 45579998 89
Q ss_pred ehHHHHH-HHHhCCeeeeCC
Q 031223 104 CMGLQCI-GEAFGGKIVRSP 122 (163)
Q Consensus 104 C~G~QlL-a~a~Gg~v~~~~ 122 (163)
-.|..++ |.++|+...-..
T Consensus 318 r~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 318 RTGADIMKALALGAKAVLIG 337 (383)
T ss_pred CcHHHHHHHHHcCCCEEEEc
Confidence 9999998 558998866543
No 398
>PRK09483 response regulator; Provisional
Probab=57.18 E-value=59 Score=23.80 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=41.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
++|+|+|........+.+.|+.. ++.+.....+.. ....+....+|.+|+--.. ...+.....+.+++.....|++-
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ii~ 80 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNM-PGIGGLEATRKILRYTPDVKIIM 80 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHCCCCeEEE
Confidence 47999987655666788888764 666542222111 1122333468877762211 11111123444454445678776
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 81 ls 82 (217)
T PRK09483 81 LT 82 (217)
T ss_pred Ee
Confidence 65
No 399
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=57.12 E-value=97 Score=24.59 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=29.9
Q ss_pred CeEEEE--ECCCChHH----HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvi--d~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
..|.++ +..+.|-. .+.+.+++.|+.+.+...+.... +.+...++||||+.+.
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 356666 22233433 35566777899988765431111 1122347999999764
No 400
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=57.07 E-value=93 Score=26.57 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=26.8
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-----------------CHHHHhccCCCEEEeCCCCC
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPG 79 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-----------------~~~~~~~~~~dgvvl~GG~~ 79 (163)
|++|--+.+-...+++.|.+.|+++...+.... +.+.+ .++|.||+|+|-.
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~--~~~d~vV~spgi~ 69 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENL--DDADVVVVSAAIK 69 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHC--CCCCEEEECCCCC
Confidence 455555444444456666666665555442110 11112 1589999998853
No 401
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=56.88 E-value=54 Score=27.94 Aligned_cols=72 Identities=28% Similarity=0.274 Sum_probs=45.9
Q ss_pred HhhHHhhhcCCCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC--CH-------HHHhccCCCEEEeCCCCC
Q 031223 12 SLYLDDKKSKNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--TV-------EELKRKNPRGVLISPGPG 79 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~--~~-------~~~~~~~~dgvvl~GG~~ 79 (163)
.+....+++++.+...+|-|-.-.. .....+.|.+.|+++++++.... +. +-.+..++|.+|--|| +
T Consensus 59 ~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGG-G 137 (465)
T KOG3857|consen 59 AEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGG-G 137 (465)
T ss_pred HHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcC-c
Confidence 3455677888888766666664332 33466788899999999863211 11 1123458999997777 5
Q ss_pred CCCCC
Q 031223 80 APQDS 84 (163)
Q Consensus 80 ~~~d~ 84 (163)
+..|.
T Consensus 138 Sa~Dt 142 (465)
T KOG3857|consen 138 SAHDT 142 (465)
T ss_pred chhhh
Confidence 55554
No 402
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=56.85 E-value=72 Score=23.03 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=45.5
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
+..-.++++.-.-.-.+.+|+|+......-..+...|.+.|+.+.+.+....++++.- .+.|-||..=|
T Consensus 12 ~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v-~~ADIVvsAtg 80 (140)
T cd05212 12 AKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV-HDADVVVVGSP 80 (140)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH-hhCCEEEEecC
Confidence 3334455555444456688999987666677788999999999998875433444431 37887776444
No 403
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=56.77 E-value=84 Score=26.12 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=40.9
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGA 80 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~ 80 (163)
++.+.+-++..+. .|++||--... ....+.+.|++.|+++.++...+ .+.+.+ ...++|.||=.|| ++
T Consensus 11 l~~l~~~~~~~g~-~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs 88 (367)
T cd08182 11 IAKLPSLLKGLGG-KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GS 88 (367)
T ss_pred HHHHHHHHHhcCC-CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cH
Confidence 3344444444432 46777742222 34457778888888777663211 122222 2347999996677 55
Q ss_pred CCCChhH
Q 031223 81 PQDSGIS 87 (163)
Q Consensus 81 ~~d~~~~ 87 (163)
+-|..+.
T Consensus 89 ~~D~aK~ 95 (367)
T cd08182 89 VLDTAKA 95 (367)
T ss_pred HHHHHHH
Confidence 6555443
No 404
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=56.38 E-value=46 Score=26.37 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=49.6
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCC-EEEeCCCCCCCCCC---
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPR-GVLISPGPGAPQDS--- 84 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~d-gvvl~GG~~~~~d~--- 84 (163)
..++.++....+.=..-..+++|.+ +....+.++|.+.. .+.++-+...-...+...... -+++.||.-.+...
T Consensus 76 ~~K~~IA~~Aa~~I~~g~tIfld~G-tT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~~~~~~~~ 153 (256)
T PRK10434 76 HKKELIAEAAVSLIHDGDSIILDAG-STVLQMVPLLSRFN-NITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFH 153 (256)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCc-HHHHHHHHHhccCC-CeEEEECCHHHHHHHhhCCCCCEEEEECCEEeCCCCeEE
Confidence 3444455554444445568899985 45556888886532 355665431112233321111 36777886544332
Q ss_pred h-hHHHHHHHhCCCCCEEEE
Q 031223 85 G-ISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 85 ~-~~~~~i~~~~~~~PvLGI 103 (163)
+ ...+.++.+..++-++|.
T Consensus 154 G~~a~~~l~~~~~D~afi~~ 173 (256)
T PRK10434 154 GQLAENAFEHFTFDKLFIGT 173 (256)
T ss_pred CHHHHHHHHhCcCCEEEEcC
Confidence 2 235667776555666653
No 405
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=56.33 E-value=1.2e+02 Score=25.51 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC---CCHHHHh----ccCCCEEEeCCCCCC
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELK----RKNPRGVLISPGPGA 80 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~----~~~~dgvvl~GG~~~ 80 (163)
-+.|+-.+.++-.+ +.+++++..+ .|.++.++..++.|+++.++..+. .+++++. ...|.++.++-|-.+
T Consensus 78 h~g~E~al~N~leP--gd~vLv~~~G-~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 78 HSGWEAALVNLLEP--GDNVLVVSTG-TWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred cchHHHHHHhhcCC--CCeEEEEEec-hHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcc
Confidence 45677777776554 5568888774 789999999999999999986542 2455553 347899999888544
Q ss_pred CCCChhHHHHHHHhCCCCCEE
Q 031223 81 PQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 81 ~~d~~~~~~~i~~~~~~~PvL 101 (163)
-.-.....+..-++.++-+.|
T Consensus 155 TgV~q~~~~~~g~lc~k~~~l 175 (385)
T KOG2862|consen 155 TGVLQDLLAISGELCHKHEAL 175 (385)
T ss_pred ccccchHHHHHHHHhhcCCeE
Confidence 222222233333343444444
No 406
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=56.31 E-value=34 Score=22.40 Aligned_cols=70 Identities=10% Similarity=-0.117 Sum_probs=39.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
...++.-||..........+...+.+..++.+..|....... ...+|.|+.+|+.-...+..+...++++
T Consensus 23 ~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~-~~~~D~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 23 PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS-DGKFDLVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp --SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH-SSSEEEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc-CCCeeEEEEcCCccCCCCHHHHHHHHHH
Confidence 347899999854444445555666666666666554344332 2379999987874433444444555554
No 407
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=56.24 E-value=74 Score=23.49 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=41.6
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
.+|+++|........+...|...|+.+............+. ..+|.+++--.. +... -...+.+++.. ..|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~d~vl~d~~~--~~~~g~~~~~~l~~~~-~~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMM--PKKNGIDTLKELRQTH-QTPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-cCCCEEEEeCCC--CCCcHHHHHHHHHhcC-CCcEEEE
Confidence 37999988666677788888888887654321100112222 368888773221 1111 12334444422 2788777
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 78 t 78 (232)
T PRK10955 78 T 78 (232)
T ss_pred E
Confidence 5
No 408
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=56.22 E-value=46 Score=26.42 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=32.8
Q ss_pred HHHHHHHH--cCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 39 NLCQYMGE--LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 39 ~~~~~l~~--~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
.+.+.+.+ .|+.+.+.+..... ++.+...++||+|+.+.. .....+.++++ +.++|+.-+
T Consensus 20 gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~-----~~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 20 NLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD-----PTAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc-----hhhHHHHHHHHHHCCCCEEEe
Confidence 35666777 67777766543111 122234589999997642 11123344443 457887654
No 409
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=56.16 E-value=44 Score=20.33 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=36.2
Q ss_pred CChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 7 VPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
-|.+.-.....++++..+..+.|+-.......++.+++++.|+.+....
T Consensus 9 CP~Pl~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 9 CPLPVLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 3556666677778888887777774444578899999999999876553
No 410
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=55.69 E-value=87 Score=23.60 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCEE---EEEeCCCCC-HHHHh---ccCCCEEEeCCCCC-CCCCChhHHHHHHH-hCCCCC
Q 031223 38 YNLCQYMGELGYHF---EVYRNDELT-VEELK---RKNPRGVLISPGPG-APQDSGISLQTVLE-LGPTVP 99 (163)
Q Consensus 38 ~~~~~~l~~~G~~~---~v~~~~~~~-~~~~~---~~~~dgvvl~GG~~-~~~d~~~~~~~i~~-~~~~~P 99 (163)
..+.++|++.|.++ .+++.+... ...+. ...+|.|+.+||-+ ++.|. .-+.++. +++.+|
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDv--TpEA~~~~~dKeip 98 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDV--TPEATRPLFDKEIP 98 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcC--CHHHHHHHHhccCC
Confidence 35888999999776 344422100 11111 11389999999976 33443 2344555 466677
No 411
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=55.65 E-value=80 Score=24.30 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCEEEEEeCCCC-CH-HH----HhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDEL-TV-EE----LKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~-~~-~~----~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+...+.. .. +. +...++||||+.+.
T Consensus 20 ~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 20 GIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 466677778888887764321 11 11 22246899998764
No 412
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=55.61 E-value=67 Score=26.43 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=41.7
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCC---hHHHHHHHHHHcCCEEEEE-eCCCCCHHHH-------hccCCCEEEeCCCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDS---FTYNLCQYMGELGYHFEVY-RNDELTVEEL-------KRKNPRGVLISPGPG 79 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~-~~~~~~~~~~-------~~~~~dgvvl~GG~~ 79 (163)
+..+-+-++......+++||-.... +...+...|++.| .+.++ ..+ .+.+.+ ...++|.||-.|| +
T Consensus 12 l~~l~~~l~~~~~~~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~d~iIaiGG-G 88 (339)
T cd08173 12 LEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIVED-ATYEEVEKVESSARDIGADFVIGVGG-G 88 (339)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEeCC-CCHHHHHHHHHHhhhcCCCEEEEeCC-c
Confidence 3444444443223346776642222 2234556677777 54433 222 333332 2247899996677 5
Q ss_pred CCCCChhHHHHHHHhCCCCCEEE
Q 031223 80 APQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 80 ~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
++.|..+..... +++|+..
T Consensus 89 s~~D~aK~~a~~----~~~p~i~ 107 (339)
T cd08173 89 RVIDVAKVAAYK----LGIPFIS 107 (339)
T ss_pred hHHHHHHHHHHh----cCCCEEE
Confidence 566654443322 3466543
No 413
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.15 E-value=91 Score=27.14 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=20.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
.+.+++|+-.+.+-. ...+.|...|+++.+.+
T Consensus 11 ~~~~v~V~G~G~sG~-aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 11 PGAPVLVAGAGVTGR-AVLAALTRFGARPTVCD 42 (488)
T ss_pred CCCeEEEEcCCHHHH-HHHHHHHHCCCEEEEEc
Confidence 345788887754322 34467888888877765
No 414
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.14 E-value=91 Score=24.69 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC------HHHHhcc--CCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELT------VEELKRK--NPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~--~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+... .+.+... ++||||+.+.
T Consensus 21 gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 21 FMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 3556777789998877543211 1122345 8999999764
No 415
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=54.85 E-value=46 Score=24.86 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=31.2
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
|-|..+.+....+-.+++++|+-++ -.-..+++.|+.+|+.+.|+..|
T Consensus 8 S~~d~i~r~t~~~l~Gk~vvV~GYG-~vG~g~A~~lr~~Ga~V~V~e~D 55 (162)
T PF00670_consen 8 SLVDGIMRATNLMLAGKRVVVIGYG-KVGKGIARALRGLGARVTVTEID 55 (162)
T ss_dssp HHHHHHHHHH-S--TTSEEEEE--S-HHHHHHHHHHHHTT-EEEEE-SS
T ss_pred hHHHHHHhcCceeeCCCEEEEeCCC-cccHHHHHHHhhCCCEEEEEECC
Confidence 3455666666777777889999874 34556999999999999998765
No 416
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=54.82 E-value=85 Score=23.26 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=38.7
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
+++.-.-.-.+++++||......-..+...|...|+.+.+.+....++.+.. .+.|-||..-|
T Consensus 26 lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~-~~ADIVVsa~G 88 (160)
T PF02882_consen 26 LLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT-RRADIVVSAVG 88 (160)
T ss_dssp HHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH-TTSSEEEE-SS
T ss_pred HHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee-eeccEEeeeec
Confidence 3444444456678999987555566688888999999999876544455443 37887776544
No 417
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=54.78 E-value=94 Score=24.60 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 77 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 77 GVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36667788999987765432111 1122357999999765
No 418
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.72 E-value=78 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=22.4
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
.+|+|+-.+.+-. .+++.|.+.|+.+.+.+
T Consensus 16 ~~v~v~G~G~sG~-a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 16 GRVLVAGAGVSGR-GIAAMLSELGCDVVVAD 45 (473)
T ss_pred CeEEEEccCHHHH-HHHHHHHHCCCEEEEEC
Confidence 3689998765433 78888989998777765
No 419
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=54.71 E-value=30 Score=28.75 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=43.5
Q ss_pred hhHhhHHhhhcCCCCCeEEEEECCCCh-----HHHHHHHHHHcCCEEEEEeC--CCCCHHHH-------hccCCCEEEeC
Q 031223 10 SKSLYLDDKKSKNNKNPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRN--DELTVEEL-------KRKNPRGVLIS 75 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ilvid~~~~~-----~~~~~~~l~~~G~~~~v~~~--~~~~~~~~-------~~~~~dgvvl~ 75 (163)
.++.+.+-++..+ |++||-.. ++ ...+...|++.|+++.++.. ...+.+++ ...++|.||-.
T Consensus 10 ~l~~l~~~l~~~g---r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (366)
T PF00465_consen 10 ALEELGEELKRLG---RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAI 85 (366)
T ss_dssp GGGGHHHHHHCTT---EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHhcC---CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 3666777777774 88888532 22 34466778888999887761 11233333 23589999977
Q ss_pred CCCCCCCCC
Q 031223 76 PGPGAPQDS 84 (163)
Q Consensus 76 GG~~~~~d~ 84 (163)
|| +++-|.
T Consensus 86 GG-GS~~D~ 93 (366)
T PF00465_consen 86 GG-GSVMDA 93 (366)
T ss_dssp ES-HHHHHH
T ss_pred CC-CCcCcH
Confidence 88 444443
No 420
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=54.71 E-value=1.3e+02 Score=25.33 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=41.8
Q ss_pred hHhhHHhhhcCCCCCeEEEEECC----CChHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~----~~~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG 77 (163)
++.+-+.++..+. .+++|+--. .+....+.+.|++.|+.+.++.-- +.+.+.+ ...++|.||=.||
T Consensus 19 ~~~l~~~~~~~g~-~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 19 LTDAMNMMADYGF-TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred HHHHHHHHHhcCC-CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444444555443 467777321 123446788888889887776421 1223322 2358999995566
Q ss_pred CCCCCCChhH
Q 031223 78 PGAPQDSGIS 87 (163)
Q Consensus 78 ~~~~~d~~~~ 87 (163)
+++-|..+.
T Consensus 98 -GS~iD~AK~ 106 (383)
T PRK09860 98 -GSPHDCAKG 106 (383)
T ss_pred -chHHHHHHH
Confidence 555555443
No 421
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=54.69 E-value=72 Score=24.31 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 20 RLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 35567778899888876532111 1223358999999765
No 422
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.58 E-value=89 Score=24.18 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~G 76 (163)
.+.+.+++.|+.+.+...+. +.+ .+...++||||+.+
T Consensus 20 gi~~~~~~~G~~~~~~~~~~-d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 20 AADEAGKLLGVDVTWYGGAL-DAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHHcCCEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 36667778999988876542 211 12235799999965
No 423
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=54.49 E-value=83 Score=23.01 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=40.7
Q ss_pred EEEE-ECCCChHHHHHHHHHH-cC-CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh----CCCC
Q 031223 27 IIVI-DNYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GPTV 98 (163)
Q Consensus 27 Ilvi-d~~~~~~~~~~~~l~~-~G-~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~----~~~~ 98 (163)
|+|+ .-..+++..+++.+.+ ++ ..+++.+....+..++. ++|.||+.-+.......+ .+.+++..+ -+++
T Consensus 2 i~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~~~l~--~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk 79 (167)
T TIGR01752 2 IGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLN--AYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGK 79 (167)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCceEEEEcccCCHhHHh--hCCEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCC
Confidence 4555 2234577778887755 33 33566665433344554 799888833222222222 334444442 2567
Q ss_pred CEEEEehH
Q 031223 99 PLFGVCMG 106 (163)
Q Consensus 99 PvLGIC~G 106 (163)
++.-++.|
T Consensus 80 ~v~~fg~g 87 (167)
T TIGR01752 80 TVALFGLG 87 (167)
T ss_pred EEEEEecC
Confidence 77766554
No 424
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=54.41 E-value=67 Score=24.17 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
+.+++++.|+.+.+...+... ...+...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 21 AEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 445666789988887654211 11222347999998654
No 425
>PRK13557 histidine kinase; Provisional
Probab=54.34 E-value=66 Score=27.30 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=44.6
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
+.+|+|++........+.+.|+..|+.+..........+.+... .+|.+++--......+.-...+.+++.....|++-
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~ 494 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLL 494 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 45799998866667778888988898876543210011223222 48877773221100122233455555445578776
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 495 ~~ 496 (540)
T PRK13557 495 TT 496 (540)
T ss_pred Ec
Confidence 54
No 426
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.32 E-value=83 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=21.9
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+++++.|+.+.+.... .+. +.+...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 21 LEEVLEEAGYTVFLANSG-EDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHcCCeEEEecCC-CChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 556667788887666432 111 1122347899998764
No 427
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=54.23 E-value=56 Score=27.78 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=40.1
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
|+|||....+...+.+.|...|+.+............+....+|.|++--. ....+.-.....+++.....|++-+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlVllD~~-~p~~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVR-MPGEDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCC-CCCCCHHHHHHHHHHhCCCCeEEEEe
Confidence 577877655666788888888887665432100112223346887776221 11111112344444444456776654
No 428
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.94 E-value=80 Score=25.92 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=41.6
Q ss_pred CChhhHhhHHhhhcC-CCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC-CHHHHh--------ccCCCE
Q 031223 7 VPISKSLYLDDKKSK-NNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-TVEELK--------RKNPRG 71 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~--------~~~~dg 71 (163)
-....+..++.++.. +..+++++|.-++. |...-.++.++.|++++.+...+. +.+++. ..+.||
T Consensus 13 i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~G 92 (293)
T PRK14185 13 IKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDG 92 (293)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCe
Confidence 334455666666555 55677777755433 444566677889999988764322 223321 236889
Q ss_pred EEe
Q 031223 72 VLI 74 (163)
Q Consensus 72 vvl 74 (163)
|++
T Consensus 93 Ilv 95 (293)
T PRK14185 93 FIV 95 (293)
T ss_pred EEE
Confidence 997
No 429
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=53.90 E-value=37 Score=25.91 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHHHHHcCCEEEEE-eCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223 40 LCQYMGELGYHFEVY-RNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~-~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G 106 (163)
+.+++++.|.++.++ +.. .+.+ .+...++||||+.+... ....+.++++ ++++|+..+=..
T Consensus 20 ~~~~a~~~g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVSPVDP-----DSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHTCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEESSST-----TTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHcCCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEecCCCH-----HHHHHHHHHHhhcCceEEEEecc
Confidence 556777889999885 543 2222 12235899999976532 1223444443 467888775433
No 430
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=53.84 E-value=95 Score=23.48 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+...+... .+.+...++||+|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 3566778889988876543211 11222357999999764
No 431
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=53.60 E-value=1.1e+02 Score=24.37 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=30.3
Q ss_pred CeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
..|.+|-. .+.|-. .+.+.+++.|+.+.+........ +.+...++||||+.++
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35666632 223433 35566777899988775431111 1222347999999875
No 432
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=53.45 E-value=88 Score=28.65 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHhhhcCCCCCeEEEEECCCC-----hH----HHHHHHHHH----c-CCEEEEEe--CCCC-CH-HHHhc----cCCCEE
Q 031223 15 LDDKKSKNNKNPIIVIDNYDS-----FT----YNLCQYMGE----L-GYHFEVYR--NDEL-TV-EELKR----KNPRGV 72 (163)
Q Consensus 15 ~~~~~~~~~~~~Ilvid~~~~-----~~----~~~~~~l~~----~-G~~~~v~~--~~~~-~~-~~~~~----~~~dgv 72 (163)
+++++.++..+++.||--.+. .. ..+.+++.+ . |+++..+. .|+. .+ +.+.. .++|.|
T Consensus 449 ~~~~~~~~~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlV 528 (659)
T PLN02699 449 SKSIEAQNPEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLI 528 (659)
T ss_pred ccccccccCCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEE
Confidence 447788888899999833322 11 234455543 3 87765432 2211 11 11211 368999
Q ss_pred EeCCCCC
Q 031223 73 LISPGPG 79 (163)
Q Consensus 73 vl~GG~~ 79 (163)
|.+||.+
T Consensus 529 ItTGGts 535 (659)
T PLN02699 529 LTLGGTG 535 (659)
T ss_pred EECCCcc
Confidence 9999955
No 433
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=53.32 E-value=99 Score=25.85 Aligned_cols=43 Identities=28% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHH-cCCEEEEEeCCCC---CHHHHhccCCCEEEeCCCCCCC
Q 031223 39 NLCQYMGE-LGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAP 81 (163)
Q Consensus 39 ~~~~~l~~-~G~~~~v~~~~~~---~~~~~~~~~~dgvvl~GG~~~~ 81 (163)
.++.-+.+ .++++.+.|++.- ...++...++|-|+|-|||-.+
T Consensus 42 ~lA~~iaellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AV 88 (337)
T COG2247 42 LLALPIAELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAV 88 (337)
T ss_pred HHhhHHHHHhCCeeEecCcccccHHHHHHHHhhCCceEEEECCCCcC
Confidence 33433433 5778776664422 2455656799999999999864
No 434
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=53.24 E-value=59 Score=28.70 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=43.2
Q ss_pred CeEEEEECC-------------CChHHHHHHHHHHcCCE--EEEEeCCCC---C-HHHHhccCCCEEEeCCCCCCCCC--
Q 031223 25 NPIIVIDNY-------------DSFTYNLCQYMGELGYH--FEVYRNDEL---T-VEELKRKNPRGVLISPGPGAPQD-- 83 (163)
Q Consensus 25 ~~Ilvid~~-------------~~~~~~~~~~l~~~G~~--~~v~~~~~~---~-~~~~~~~~~dgvvl~GG~~~~~d-- 83 (163)
|+++|||-+ +.|+.-++-+|+..|.+ +..+..|.. . ..++ ..+||.+|+-+|...|..
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~-l~k~d~~V~I~G~~vPGKYl 79 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEI-LNKYDLVVFIAGVTVPGKYL 79 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhh-hhcCCEEEEEeccccCcccc
Confidence 567888754 23455577788888644 444443311 0 1111 137999999999665542
Q ss_pred ------ChhHHHHHHHhCCCCCEEE
Q 031223 84 ------SGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 84 ------~~~~~~~i~~~~~~~PvLG 102 (163)
.+++..+++.+ +++.|||
T Consensus 80 ga~P~tl~E~~~i~~~~-~gvkilG 103 (560)
T COG1031 80 GATPATLEELLRILSIA-DGVKILG 103 (560)
T ss_pred CCCCCCHHHHHHHHHHh-cCcEEec
Confidence 22344444433 4477777
No 435
>PLN02884 6-phosphofructokinase
Probab=53.21 E-value=16 Score=31.48 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=29.7
Q ss_pred ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE-------------ehHHHHHHHH
Q 031223 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (163)
Q Consensus 66 ~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------C~G~QlLa~a 113 (163)
..+.|++|+-||.++......+.+..++...++|+.|| |+|+.--+..
T Consensus 141 ~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~ 201 (411)
T PLN02884 141 ARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE 201 (411)
T ss_pred HcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH
Confidence 35788888888866543333333333332234888888 9999876553
No 436
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=53.15 E-value=1.1e+02 Score=26.69 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=32.8
Q ss_pred CeEEEE-ECCCChHHHHHH----HHHHc--CCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCC
Q 031223 25 NPIIVI-DNYDSFTYNLCQ----YMGEL--GYHFEVYRNDELTVEELKR--KNPRGVLISPGPG 79 (163)
Q Consensus 25 ~~Ilvi-d~~~~~~~~~~~----~l~~~--G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~ 79 (163)
.+|+|+ .-..+++..+++ .+++. |+++++++....+.+++.. .++|+|++ |+|-
T Consensus 252 ~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-GspT 314 (479)
T PRK05452 252 DRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSST 314 (479)
T ss_pred CcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECCc
Confidence 457776 323345665554 45544 5677888766555666542 26999998 6653
No 437
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=53.12 E-value=98 Score=23.45 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=23.5
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
+.+++++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 21 IDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5567777899888775431111 1222357999999764
No 438
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.01 E-value=81 Score=25.94 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=42.6
Q ss_pred ccCCChhhHhhHHhhhcC-CCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC-CCHHHH----h----ccC
Q 031223 4 AEAVPISKSLYLDDKKSK-NNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-LTVEEL----K----RKN 68 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~----~~~ 68 (163)
+++-....++.++.++.. +..+++++|.-++. |...-.++.++.|+.++.+...+ .+.+++ . ..+
T Consensus 12 A~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~ 91 (297)
T PRK14168 12 REEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDS 91 (297)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 334445566667777655 55567777754433 44456667788999998876432 232322 1 136
Q ss_pred CCEEEe
Q 031223 69 PRGVLI 74 (163)
Q Consensus 69 ~dgvvl 74 (163)
.+||++
T Consensus 92 V~GIiv 97 (297)
T PRK14168 92 IHGILV 97 (297)
T ss_pred CCEEEE
Confidence 789987
No 439
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=52.99 E-value=24 Score=29.65 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHHHH
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC 109 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~Ql 109 (163)
..|.|++.||-+. .++.....+.++|+|||-.|--+
T Consensus 100 gVdlIvfaGGDGT------arDVa~av~~~vPvLGipaGvk~ 135 (355)
T COG3199 100 GVDLIVFAGGDGT------ARDVAEAVGADVPVLGIPAGVKN 135 (355)
T ss_pred CceEEEEeCCCcc------HHHHHhhccCCCceEeeccccce
Confidence 6999999999664 23333334788999999887543
No 440
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.98 E-value=81 Score=22.45 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 78 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG~ 78 (163)
..-+...|+..|+++.-...+ .+.+++ ...++|.|++|+-.
T Consensus 19 ~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch
Confidence 444777889999998777655 344443 23589999997753
No 441
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=52.93 E-value=1.3e+02 Score=25.17 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=40.4
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG 77 (163)
+..+.+-++..+. .+++||--.. ++...+...|++.|+++.++.-.. .+.+.+ ...++|.||=-||
T Consensus 18 l~~l~~~~~~~g~-~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 18 IGALTDEVKRRGF-KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred HHHHHHHHHhcCC-CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3344444444433 3677773221 134457778888898887774211 122222 2348999995566
Q ss_pred CCCCCCChh
Q 031223 78 PGAPQDSGI 86 (163)
Q Consensus 78 ~~~~~d~~~ 86 (163)
+++-|..+
T Consensus 97 -GS~iD~aK 104 (382)
T PRK10624 97 -GSPQDTCK 104 (382)
T ss_pred -hHHHHHHH
Confidence 55555544
No 442
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=52.46 E-value=1.4e+02 Score=25.03 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=36.2
Q ss_pred CeEEEEECCCC----hHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~~----~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++||--... +...+.+.|++.|+++.++.... .+.+.+ ...++|.||=.|| +++-|..+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 47887732212 33457788888898887764211 223322 2357999996676 556565443
No 443
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.30 E-value=1e+02 Score=23.44 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=31.9
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
+.+++++.|+++.+.... .+. ..+...++||+|+.+... +...+.+..+ ++++|+..+
T Consensus 22 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~-----~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 22 FQAAAEEDGVEVIVLDAN-GDVARQAAQVEDLIAQKVDGIILWPTDG-----QAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHhcCCEEEEEcCC-cCHHHHHHHHHHHHHcCCCEEEEecCCc-----cccHHHHHHHHHCCCcEEEe
Confidence 555677789998877543 221 112234799999965421 1112233332 356787654
No 444
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=51.95 E-value=1.3e+02 Score=24.45 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcC-CEEEEE------eCCCCCHHHH-----------hccCCCEEEeCCCCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVY------RNDELTVEEL-----------KRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~------~~~~~~~~~~-----------~~~~~dgvvl~GG~~~~~ 82 (163)
++..++|.|+|.+-+-...+.+..+.+- .++..+ ||-..+.+++ ....++.+||- .-+
T Consensus 2 ~~~~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIA----CNT 77 (269)
T COG0796 2 SEPQPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIA----CNT 77 (269)
T ss_pred CccCCeEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEe----cch
Confidence 3456789999987553322222222332 233333 2222233332 22358888882 111
Q ss_pred CChhHHHHHHH-hCCCCCEEEEehHH
Q 031223 83 DSGISLQTVLE-LGPTVPLFGVCMGL 107 (163)
Q Consensus 83 d~~~~~~~i~~-~~~~~PvLGIC~G~ 107 (163)
......+.+|+ ++ +||+||==|.
T Consensus 78 ASa~al~~LR~~~~--iPVvGviPai 101 (269)
T COG0796 78 ASAVALEDLREKFD--IPVVGVIPAI 101 (269)
T ss_pred HHHHHHHHHHHhCC--CCEEEeccch
Confidence 11223556666 54 9999998444
No 445
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=51.86 E-value=36 Score=29.47 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.0
Q ss_pred CCCCEEEEehHHHHHHHH
Q 031223 96 PTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 96 ~~~PvLGIC~G~QlLa~a 113 (163)
.+..++|+|.|.|.+.+.
T Consensus 158 ~~~kviGlC~~~~~~~~~ 175 (437)
T cd05298 158 PNARILNICDMPIAIMDS 175 (437)
T ss_pred CCCCEEEECCcHHHHHHH
Confidence 357899999999876543
No 446
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=51.67 E-value=65 Score=25.50 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=47.6
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCC----hhHH
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDS----GISL 88 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~----~~~~ 88 (163)
++..-.+.=..-..++||.+ +....+.+.|... ..+.|+.+...-...+.. .+.+ +++.||.-.+... ....
T Consensus 81 IA~~Aa~~I~~g~tIflD~G-tT~~~la~~L~~~-~~ltVvTNsl~ia~~l~~~~~~~-villGG~~~~~~~~~~G~~a~ 157 (252)
T PRK10906 81 IARKVASQIPNGATLFIDIG-TTPEAVAHALLNH-SNLRIVTNNLNVANTLMAKEDFR-IILAGGELRSRDGGIIGEATL 157 (252)
T ss_pred HHHHHHhhCCCCCEEEEcCc-HHHHHHHHHhcCC-CCcEEEECcHHHHHHHhhCCCCE-EEEECCEEecCCCccCCHHHH
Confidence 33333333344458899975 4566788888653 135555543111233332 2344 6677886544332 2346
Q ss_pred HHHHHhCCCCCEEEEe
Q 031223 89 QTVLELGPTVPLFGVC 104 (163)
Q Consensus 89 ~~i~~~~~~~PvLGIC 104 (163)
+.++++.-++-++|.|
T Consensus 158 ~~l~~~~~d~afi~~~ 173 (252)
T PRK10906 158 DFISQFRLDFGILGIS 173 (252)
T ss_pred HHHHhccCCEEEEcCC
Confidence 7777775567777644
No 447
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=51.57 E-value=11 Score=31.48 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=30.1
Q ss_pred hccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE-------------ehHHHHHHHH
Q 031223 65 KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (163)
Q Consensus 65 ~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------C~G~QlLa~a 113 (163)
...+.|++|+-||.++......+.+..++-..++|+.|| |+|+.-.+..
T Consensus 89 ~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~ 150 (338)
T cd00363 89 KKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKT 150 (338)
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHH
Confidence 345899999999976544433343433332234666655 8998877654
No 448
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=51.53 E-value=85 Score=22.30 Aligned_cols=66 Identities=21% Similarity=0.152 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
.|.+++-.+.++++|.++..++.+..+..++ +.+.++|+-.-+.-.-.....+.+....+ -+.||+
T Consensus 4 ~S~TGNte~fv~~lg~~~~~i~~~~~d~~~~---~~~~vliTyT~G~G~vP~~~~~Fle~~~n--~~~gV~ 69 (125)
T TIGR00333 4 SSKTGNVQRFVEKLGFQHIRIPVDETDDIHV---DQEFVLITYTGGFGAVPKQTISFLNKKHN--LLRGVA 69 (125)
T ss_pred EcccccHHHHHHHcCCCcEEeecCCcchhhc---CCCEEEEecCCCCCcCCHHHHHHHHhhhh--cEEEEE
Confidence 3555666666778888765554432222222 67888885443321122345556655444 455554
No 449
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=51.40 E-value=84 Score=26.54 Aligned_cols=62 Identities=16% Similarity=0.326 Sum_probs=36.6
Q ss_pred CeEEEEECC----CChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~----~~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++||--. .++...+.+.|++.|+++.+++--+ .+.+.+ ...++|.||=.|| +++-|..+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ 96 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAKI 96 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 578877321 1244567788888898887764211 222222 2357999996666 556565443
No 450
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.14 E-value=1.1e+02 Score=23.25 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=49.3
Q ss_pred CCeEEEE----ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCC-CCChhHHHHHHHh
Q 031223 24 KNPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAP-QDSGISLQTVLEL 94 (163)
Q Consensus 24 ~~~Ilvi----d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~-~d~~~~~~~i~~~ 94 (163)
..+|++- |.++--...+...|+..|+++..+..+ .+.+++. ..++|.|-+|-..... .....+.+.+++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~-~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD-VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 4566665 222212345777889999998766554 4555542 3589999997753221 1112334455553
Q ss_pred CC--CCCEE--EEehHHHHHHHHhCCeee
Q 031223 95 GP--TVPLF--GVCMGLQCIGEAFGGKIV 119 (163)
Q Consensus 95 ~~--~~PvL--GIC~G~QlLa~a~Gg~v~ 119 (163)
.. ++||+ |-.+- +.++..+|+...
T Consensus 161 ~~~~~~~i~vGG~~~~-~~~~~~~GaD~~ 188 (201)
T cd02070 161 GLRDKVKVMVGGAPVN-QEFADEIGADGY 188 (201)
T ss_pred CCCcCCeEEEECCcCC-HHHHHHcCCcEE
Confidence 22 44433 22222 235566666543
No 451
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=50.89 E-value=1.1e+02 Score=23.18 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
.+.+.+++.|+.+.+...+.... ..+...++||+|+.++.. .. . +.+..+ .+++|++.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~-~---~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADA--AT-S---PALDLLDAERVPYVLAY 86 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC--Cc-h---HHHHHHhhCCCCEEEEe
Confidence 35567777898888875431111 112234799999865421 11 1 122332 3567876653
No 452
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=50.76 E-value=49 Score=26.31 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC-H----HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~-~----~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+... . +.+...++||+|+.+.
T Consensus 22 gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 22 GIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 3666777789988776543211 1 1233458999999843
No 453
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=50.75 E-value=71 Score=29.63 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (163)
.+.+|+|+|........+...|...|+.+..........+.+.. ..||.|++-=. .|...+ ...+.+++.....|+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~--mp~~~G~~~~~~lr~~~~~~~i 757 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFD--LPDYDGITLARQLAQQYPSLVL 757 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCCE
Confidence 34689999876556666788888899887754321111222322 35787776211 122222 344555554456888
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+.+=
T Consensus 758 i~~t 761 (914)
T PRK11466 758 IGFS 761 (914)
T ss_pred EEEe
Confidence 7653
No 454
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.67 E-value=1.5e+02 Score=25.57 Aligned_cols=32 Identities=0% Similarity=-0.298 Sum_probs=23.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+.+|+|+-.+-+ -....+.|.+.|+.+.+.+.
T Consensus 8 ~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 8 GRRVALWGWGRE-GRAAYRALRAHLPAQALTLF 39 (468)
T ss_pred CCEEEEEccchh-hHHHHHHHHHcCCEEEEEcC
Confidence 457999988643 22477889999999888764
No 455
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.54 E-value=1.1e+02 Score=23.26 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~G 76 (163)
.+.+.+++.|+.+.+...+.... +.+....+||+|+.+
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06285 20 GIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGD 63 (265)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 46677778898887665432111 112235799999965
No 456
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=50.47 E-value=1.1e+02 Score=23.19 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=43.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC---CCCHHHH------------------------hccCCCEEEeCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEEL------------------------KRKNPRGVLISP 76 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~---~~~~~~~------------------------~~~~~dgvvl~G 76 (163)
+.+|++|.....+...+.......|..+..-++- -.+...+ ....||.||+..
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 5679999876555656666666666654332221 1122222 123689999865
Q ss_pred CCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 77 GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 77 G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
- ... ..+++|. .-++|+.|+|
T Consensus 136 ~----~~~---~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 136 P----RKE---HQAIREASKLGIPVIAIV 157 (193)
T ss_pred C----ccc---hHHHHHHHHcCCCEEEEe
Confidence 3 221 3456664 5679999998
No 457
>PLN02979 glycolate oxidase
Probab=50.47 E-value=60 Score=27.53 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=49.9
Q ss_pred HHHHHHHHHHc-CCEEEEEeCCCCCHHHH---hccCCCEEEeCCCCCCCCCCh-h---HHHHHHH-hCCCCCEE---EEe
Q 031223 37 TYNLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-I---SLQTVLE-LGPTVPLF---GVC 104 (163)
Q Consensus 37 ~~~~~~~l~~~-G~~~~v~~~~~~~~~~~---~~~~~dgvvl~GG~~~~~d~~-~---~~~~i~~-~~~~~PvL---GIC 104 (163)
+..-.+||++. +..+.+--. .+.++. ....+|+|+++|.-+...|.. . ....+++ +..++||+ ||.
T Consensus 211 tW~dl~wlr~~~~~PvivKgV--~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr 288 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR 288 (366)
T ss_pred CHHHHHHHHhccCCCEEeecC--CCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence 33446677763 444433222 233332 235899999988644433332 1 2232333 45678998 999
Q ss_pred hHHHHH-HHHhCCeeeeCC
Q 031223 105 MGLQCI-GEAFGGKIVRSP 122 (163)
Q Consensus 105 ~G~QlL-a~a~Gg~v~~~~ 122 (163)
.|..++ |.++|++..-..
T Consensus 289 ~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 289 RGTDVFKALALGASGIFIG 307 (366)
T ss_pred cHHHHHHHHHcCCCEEEEc
Confidence 999998 779999866543
No 458
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=50.44 E-value=50 Score=25.05 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=42.7
Q ss_pred hhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC----C----HHHHhccCCCEEEeCCC
Q 031223 10 SKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL----T----VEELKRKNPRGVLISPG 77 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~----~----~~~~~~~~~dgvvl~GG 77 (163)
.-+.+++.+.....+.+|+++-...+ ...+.+.|++.|+++..+..+.. . .+.+...++|.|+++-+
T Consensus 103 ~s~~L~~~l~~~~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~ 177 (231)
T PF02602_consen 103 SSEGLAELLKEQLRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSP 177 (231)
T ss_dssp SHHHHHGGHHHCCTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSH
T ss_pred CHHHHHHHHHhhCCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCH
Confidence 34666776665455578999865433 55688999999988776654433 1 11222347899999543
No 459
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=50.32 E-value=67 Score=21.85 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-h-CCCCCEEEE
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTVPLFGV 103 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~-~~~~PvLGI 103 (163)
.+.+.+++.|.++++........++. ..++|.+++++ .-.+ ..+.+++ . ..++|+--|
T Consensus 19 km~~~a~~~gi~~~i~a~~~~e~~~~-~~~~Dvill~P--Qv~~----~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 19 ALNKGAKERGVPLEAAAGAYGSHYDM-IPDYDLVILAP--QMAS----YYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred HHHHHHHHCCCcEEEEEeeHHHHHHh-ccCCCEEEEcC--hHHH----HHHHHHHHhhhcCCCEEEe
Confidence 36667788999988876532222222 24789666633 2111 1333444 3 356888644
No 460
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=50.23 E-value=1.1e+02 Score=23.11 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=22.1
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
+.+++++.|+.+.+...+... .+.+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 21 ILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556667788888776543111 11122347888888754
No 461
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=50.17 E-value=65 Score=25.46 Aligned_cols=88 Identities=15% Similarity=0.012 Sum_probs=46.9
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhc-cCCCEEEeCCCCCCCCCC---h
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKR-KNPRGVLISPGPGAPQDS---G 85 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~-~~~dgvvl~GG~~~~~d~---~ 85 (163)
++.++....+.=..-..++||.+ +....+.+.|... .+.++-+. .. ...+.. .+++ +++.||--.+... +
T Consensus 80 K~~IA~~Aa~~I~~g~~Ifld~G-sT~~~la~~L~~~--~ltVvTns-l~ia~~l~~~~~~~-v~l~GG~~~~~~~~~~G 154 (251)
T PRK13509 80 KVRIAKAASQLCNPGESVVINCG-STAFLLGRELCGK--PVQIITNY-LPLANYLIDQEHDS-VIIMGGQYNKSQSITLS 154 (251)
T ss_pred HHHHHHHHHHhCCCCCEEEECCc-HHHHHHHHHhCCC--CeEEEeCC-HHHHHHHHhCCCCE-EEEECCeEcCCcceeEC
Confidence 33344444333344458899986 4555688888654 36666543 22 223322 2344 6667886544322 2
Q ss_pred hHHHHHHHhCCCCCEEEE
Q 031223 86 ISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 86 ~~~~~i~~~~~~~PvLGI 103 (163)
...+.++.+.-++-++|.
T Consensus 155 ~~~~~l~~~~~d~aFig~ 172 (251)
T PRK13509 155 PQGSENSLYAGHWMFTSG 172 (251)
T ss_pred HHHHHHHhCcCCEEEECC
Confidence 334666666555666653
No 462
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=50.06 E-value=89 Score=23.94 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=46.3
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCCCChhHHHHHHH-hCCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLE-LGPTV 98 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~ 98 (163)
+...++.-||-.+.-...+.+-.++.|++ ++++.-+ .++.+... .+|+++|.|| .+ .+.+.+...+ +..+-
T Consensus 56 ~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~--Ap~~L~~~~~~daiFIGGg-~~---i~~ile~~~~~l~~gg 129 (187)
T COG2242 56 GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD--APEALPDLPSPDAIFIGGG-GN---IEEILEAAWERLKPGG 129 (187)
T ss_pred CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc--chHhhcCCCCCCEEEECCC-CC---HHHHHHHHHHHcCcCC
Confidence 44556777776444455566667777764 5566543 23344333 6999999887 33 2233333333 34333
Q ss_pred CEEEEehHHHHHHHH
Q 031223 99 PLFGVCMGLQCIGEA 113 (163)
Q Consensus 99 PvLGIC~G~QlLa~a 113 (163)
-+..=+-=.+.++.+
T Consensus 130 rlV~naitlE~~~~a 144 (187)
T COG2242 130 RLVANAITLETLAKA 144 (187)
T ss_pred eEEEEeecHHHHHHH
Confidence 444444444444443
No 463
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=49.76 E-value=1.4e+02 Score=25.54 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=9.7
Q ss_pred CCCEEEeCCCCC
Q 031223 68 NPRGVLISPGPG 79 (163)
Q Consensus 68 ~~dgvvl~GG~~ 79 (163)
++|.||+|+|-.
T Consensus 60 ~~d~vV~SpgI~ 71 (448)
T TIGR01081 60 KPDLVVIGNAMK 71 (448)
T ss_pred CCCEEEECCCCC
Confidence 589999999853
No 464
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.71 E-value=1.1e+02 Score=23.23 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
.+.+++++.|+.+.+...+... .+.+...++||+|+.+.
T Consensus 20 gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 20 AVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3556777788888776543111 11222347888888753
No 465
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=49.60 E-value=1.1e+02 Score=25.03 Aligned_cols=87 Identities=8% Similarity=0.074 Sum_probs=49.2
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHH--HHHHHHHHcCCEEEEEeCCCCCHHHH-hccCCCEEEeCCCCCCCCC-------
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTY--NLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQD------- 83 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~--~~~~~l~~~G~~~~v~~~~~~~~~~~-~~~~~dgvvl~GG~~~~~d------- 83 (163)
++..-...+.+.+|.+.+......+ ...+.|.+.|+++.++... ...-+ ...++|.+++ |. .....
T Consensus 142 ~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Ds--a~~~~m~~~~vd~Vlv-GA-d~v~~nG~v~nk 217 (303)
T TIGR00524 142 VIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDS--MAAYFMQKGEIDAVIV-GA-DRIARNGDVANK 217 (303)
T ss_pred HHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChh--HHHHHccccCCCEEEE-cc-cEEecCCCEeEh
Confidence 4444455556677877776554443 4688999999999988532 12222 1226887777 43 22222
Q ss_pred ChhH-HHHHHHhCCCCCEEEEeh
Q 031223 84 SGIS-LQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 84 ~~~~-~~~i~~~~~~~PvLGIC~ 105 (163)
.+.. ...+.+ ..++|++-.|-
T Consensus 218 ~GT~~lA~~Ak-~~~vPv~V~a~ 239 (303)
T TIGR00524 218 IGTYQLAVLAK-EFRIPFFVAAP 239 (303)
T ss_pred hhHHHHHHHHH-HhCCCEEEecc
Confidence 1222 222222 34699998773
No 466
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=49.52 E-value=1.2e+02 Score=23.20 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
.+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 20 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 20 GVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 35566777899888765331111 1222357999999764
No 467
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=49.24 E-value=77 Score=25.76 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=45.6
Q ss_pred CCCCCeEEEEECCCC-hHHHHHHHHHHcC--CEEEEEeCCC---CCHHHH-------hcc----CCCEEEeCCCCCCCCC
Q 031223 21 KNNKNPIIVIDNYDS-FTYNLCQYMGELG--YHFEVYRNDE---LTVEEL-------KRK----NPRGVLISPGPGAPQD 83 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~-~~~~~~~~l~~~G--~~~~v~~~~~---~~~~~~-------~~~----~~dgvvl~GG~~~~~d 83 (163)
|....+|+||-...+ -.+.+.+.++..+ +++.++|..- ....++ ... .+|.|||.=|-|+..|
T Consensus 11 P~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eD 90 (319)
T PF02601_consen 11 PKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIED 90 (319)
T ss_pred CCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHH
Confidence 344468999976444 3445666665543 5666666531 122222 111 4899998656576655
Q ss_pred ChhH--HHHHHH-hCCCCCEE
Q 031223 84 SGIS--LQTVLE-LGPTVPLF 101 (163)
Q Consensus 84 ~~~~--~~~i~~-~~~~~PvL 101 (163)
...+ +...+. +...+||+
T Consensus 91 L~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 91 LWAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred hcccChHHHHHHHHhCCCCEE
Confidence 4322 344454 35669987
No 468
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=49.16 E-value=1e+02 Score=25.99 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCeEEEEEC--CCC----hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCCC
Q 031223 23 NKNPIIVIDN--YDS----FTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQD 83 (163)
Q Consensus 23 ~~~~Ilvid~--~~~----~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~d 83 (163)
...++-||-. ..+ ....+.+.++++|.++..+-.+..+++.+... .+|..|++|=|.-+.|
T Consensus 236 ~a~~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taCPRi~iD 303 (347)
T COG1736 236 DAKSFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTACPRIPID 303 (347)
T ss_pred cCCeEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecCCCcccc
Confidence 3346666632 122 24457788888998877776666778888765 7899999998865444
No 469
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=49.13 E-value=1.6e+02 Score=24.74 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=36.6
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.|++||--..+ ....+.+.|++.|+++.++.... .+.+.+ ...++|.||-.|| +++.|..+.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 46777732222 23467788888898887774211 122222 2347999996677 566665443
No 470
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=48.86 E-value=95 Score=25.27 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCeEEEEE--CCCChHH----HHHHHHHHcCCEEEEEeCC-CCCH-------HHHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 24 KNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 24 ~~~Ilvid--~~~~~~~----~~~~~l~~~G~~~~v~~~~-~~~~-------~~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
..+|.+|- ..+.|-. .+.+.+++.|+.+.+.... ..+. +.+...++||||+.+.. ...+.+
T Consensus 46 t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~-----~~~~~~ 120 (343)
T PRK10936 46 AWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVT-----PDGLNP 120 (343)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-----hHHhHH
Confidence 34677663 2233433 3666777889998887532 1111 12223579999997532 112223
Q ss_pred HHHH-hCCCCCEEEE
Q 031223 90 TVLE-LGPTVPLFGV 103 (163)
Q Consensus 90 ~i~~-~~~~~PvLGI 103 (163)
.+ + .+.++|+.-+
T Consensus 121 ~l-~~~~~giPvV~~ 134 (343)
T PRK10936 121 DL-ELQAANIPVIAL 134 (343)
T ss_pred HH-HHHHCCCCEEEe
Confidence 33 3 2456887643
No 471
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=48.79 E-value=1e+02 Score=25.75 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=56.4
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-----C--HH----HHhccCCCEEEeCCCCCCCCCChhHH
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-----T--VE----ELKRKNPRGVLISPGPGAPQDSGISL 88 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-----~--~~----~~~~~~~dgvvl~GG~~~~~d~~~~~ 88 (163)
.+-.+.+|+|-... ....+.+.|++.|+++..+|.-.. . .+ .+....||.||++-+.+ ...+.
T Consensus 7 ~pL~g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ng----v~~~~ 80 (381)
T PRK07239 7 APLAGFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIG----FRGWV 80 (381)
T ss_pred CCCCCcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHH----HHHHH
Confidence 34567789888642 466788999999999887753211 0 11 11223699999976532 11112
Q ss_pred HHHHH---------hCCCCCEEEEehHHHHHHHHhCCeee
Q 031223 89 QTVLE---------LGPTVPLFGVCMGLQCIGEAFGGKIV 119 (163)
Q Consensus 89 ~~i~~---------~~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (163)
+.+++ .-++.|+++|.-+---..+.+|-++.
T Consensus 81 ~~l~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~ 120 (381)
T PRK07239 81 EAADGWGLADELLEALSSARLLARGPKATGAIRAAGLREE 120 (381)
T ss_pred HHHHHcCChHHHHHHHcCCeEEEECccHHHHHHHcCCCCc
Confidence 22211 12468888887777666667776543
No 472
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=48.77 E-value=1.1e+02 Score=23.47 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
+.+++++.|+.+.+....... .+.+...++||+|+.++
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 21 IESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 556677788888776543111 11222357899988765
No 473
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.76 E-value=88 Score=21.62 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCCC
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 78 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG~ 78 (163)
..+...|+..|+++.....+ .+.+++ ...++|.|.+|...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc
Confidence 34667889999999887665 444444 23589999998763
No 474
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.61 E-value=78 Score=20.95 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=49.3
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEE--eC-CCCCHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCC
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVY--RN-DELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL--GPTV 98 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~--~~-~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~ 98 (163)
+|+||-..+.....+.+.+++.|++.... +. .......++. .+.|.||+.=+.-+ -.....+++. ..++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs----H~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS----HNAMWKVKKAAKKYGI 76 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC----hHHHHHHHHHHHHcCC
Confidence 47888665577888999999999998887 11 1111112332 36799998544211 1123334442 4679
Q ss_pred CEEEEe-hHHHHHHHH
Q 031223 99 PLFGVC-MGLQCIGEA 113 (163)
Q Consensus 99 PvLGIC-~G~QlLa~a 113 (163)
|+.=.= .|..-|..+
T Consensus 77 p~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 77 PIIYSRSRGVSSLERA 92 (97)
T ss_pred cEEEECCCCHHHHHHH
Confidence 977543 466555544
No 475
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.56 E-value=1.7e+02 Score=25.02 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=24.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
.+|+|+..+.+-. .+++.|...|+.+.+.+.
T Consensus 15 ~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CeEEEEcccHHHH-HHHHHHHHCCCEEEEECC
Confidence 4799999865433 688899999998888763
No 476
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=48.45 E-value=1.2e+02 Score=25.42 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=41.2
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG 77 (163)
++.+.+.++..+. .|++||--.. .....+...|++.|+++.++..- +.+.+.+ ...++|.||=.||
T Consensus 16 l~~l~~~l~~~g~-~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 16 IKEIGDELKNLGF-KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred HHHHHHHHHHhCC-CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444444454433 4688883221 12345778888889888777421 1222222 2347999995566
Q ss_pred CCCCCCChh
Q 031223 78 PGAPQDSGI 86 (163)
Q Consensus 78 ~~~~~d~~~ 86 (163)
+++-|..+
T Consensus 95 -GS~iD~aK 102 (377)
T cd08176 95 -GSPHDCAK 102 (377)
T ss_pred -cHHHHHHH
Confidence 55555444
No 477
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=48.22 E-value=74 Score=25.47 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=49.9
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCC----h
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDS----G 85 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~----~ 85 (163)
.+.++......=..-..++||.+ +....+.++|.... .+.++-+...-...+.. .+++ +++.||.-.+... .
T Consensus 93 K~~IA~~Aa~~I~dgd~Ifld~G-tT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~-v~llGG~~~~~~~~~~G~ 169 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVILDSG-TTTFEIARLMRKHT-DVIAMTNGMNVANALLEAEGVE-LLMTGGHLRRQSQSFYGD 169 (269)
T ss_pred HHHHHHHHHhhCCCCCEEEECCc-hHHHHHHHhcCcCC-CeEEEeCCHHHHHHHHhCCCCE-EEEECCEEecCCCceECH
Confidence 34444444444344568899975 55667888886532 35666543111223321 2444 6777886554432 2
Q ss_pred hHHHHHHHhCCCCCEEEEe
Q 031223 86 ISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 86 ~~~~~i~~~~~~~PvLGIC 104 (163)
...+.++++.-++-++|.|
T Consensus 170 ~a~~~l~~~~~d~afig~~ 188 (269)
T PRK09802 170 QAEQSLQNYHFDMLFLGVD 188 (269)
T ss_pred HHHHHHHhccCCEEEEcCc
Confidence 3466777775557777643
No 478
>PRK14072 6-phosphofructokinase; Provisional
Probab=48.18 E-value=14 Score=31.80 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=26.3
Q ss_pred ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE-------------EehHHHHHHH
Q 031223 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGE 112 (163)
Q Consensus 66 ~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG-------------IC~G~QlLa~ 112 (163)
..+.|++|+-||.++......+.+.+++...++|+.| .|.|+.-.+.
T Consensus 101 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~ 160 (416)
T PRK14072 101 AHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK 160 (416)
T ss_pred HcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH
Confidence 3478888888886654333333333332223366665 4788766544
No 479
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=48.03 E-value=1.6e+02 Score=24.32 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=42.6
Q ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
.|++||--..++ ...+.+.|++.|+.+.++... +.+.+.+ ...++|.||=.|| +++.|..+.....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ia~~- 100 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVLADK- 100 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHHH-
Confidence 678777432233 233566777778876654311 1223322 1247999996677 5666655443332
Q ss_pred HhCCCCCEEEEeh
Q 031223 93 ELGPTVPLFGVCM 105 (163)
Q Consensus 93 ~~~~~~PvLGIC~ 105 (163)
.++|+..|.=
T Consensus 101 ---~~~p~i~VPT 110 (345)
T cd08171 101 ---LGKPVFTFPT 110 (345)
T ss_pred ---cCCCEEEecC
Confidence 2578887763
No 480
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=48.02 E-value=81 Score=20.98 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=22.6
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISP 76 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~G 76 (163)
+.+.+++.|+++++...+ ..+++. .++|.++.+.
T Consensus 23 i~~~l~~~gi~~~v~~~~---~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 23 IKELCQSHNIPVELIQCR---VNEIETYMDGVHLICTTA 58 (94)
T ss_pred HHHHHHHCCCeEEEEEec---HHHHhhhcCCCCEEEECC
Confidence 557778899999888743 334433 5789775543
No 481
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=47.92 E-value=58 Score=21.72 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHH-h-CCCCCEEEE
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-L-GPTVPLFGV 103 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~-~~~~PvLGI 103 (163)
.+.+.+++.|.++++.... ..++. ..++|.|++++=. .+ ..+.+++ . ..++|+.-|
T Consensus 18 ki~~~~~~~~~~~~v~~~~---~~~~~~~~~~~Diil~~Pqv--~~----~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 18 KMKKAAEKRGIDAEIEAVP---ESELEEYIDDADVVLLGPQV--RY----MLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred HHHHHHHHCCCceEEEEec---HHHHHHhcCCCCEEEEChhH--HH----HHHHHHHHhccCCCcEEEc
Confidence 3566777889988887654 33332 2479977775421 11 2233443 2 356887643
No 482
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=47.86 E-value=70 Score=20.23 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=41.8
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~Pv 100 (163)
.+++++++........+.+.+...|.. +............+....+|.+++-..... .+.-...+.+++. ....|+
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~l~d~~~~~-~~~~~~~~~l~~~~~~~~~~~ 83 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPN-MDGLELLKTIRADGAMSALPV 83 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccCCCEEEEcCCCCC-CCHHHHHHHHHhCCCcCCCcE
Confidence 368999987655666677888877764 333321111122222346887776332111 1111233444442 245787
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-++-
T Consensus 84 i~~~~ 88 (129)
T PRK10610 84 LMVTA 88 (129)
T ss_pred EEEEC
Confidence 77653
No 483
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=47.81 E-value=1.4e+02 Score=23.67 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred CeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
..|.++- ..+.|-.. +.+.+++.|+.+.+...+.... ..+...++||+|+.+.
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4566663 22334333 4556677899988775432111 1122347999999764
No 484
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=47.74 E-value=1.1e+02 Score=22.88 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
+..++++.|+.+.+...+... ...+...++|++|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~ 64 (264)
T cd06267 21 IEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPS 64 (264)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecC
Confidence 344455567766665543111 01112236777777554
No 485
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.74 E-value=1.1e+02 Score=23.46 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=21.5
Q ss_pred HHHHHHHH-cCCEEEEEeCCC-CCHHHHhccCCCEEEeCC
Q 031223 39 NLCQYMGE-LGYHFEVYRNDE-LTVEELKRKNPRGVLISP 76 (163)
Q Consensus 39 ~~~~~l~~-~G~~~~v~~~~~-~~~~~~~~~~~dgvvl~G 76 (163)
.+.+++++ .|+.+.+...+. ...+.+...++||+|+.+
T Consensus 19 gi~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 19 GIARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred HHHHHHHhcCCeEEEEecccchhhhhhccccccceEEEEC
Confidence 46677777 567665543321 112333345789999864
No 486
>PRK07308 flavodoxin; Validated
Probab=47.64 E-value=98 Score=21.87 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=29.5
Q ss_pred eEEEE-ECCCChHHHHH----HHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCC
Q 031223 26 PIIVI-DNYDSFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (163)
Q Consensus 26 ~Ilvi-d~~~~~~~~~~----~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~ 78 (163)
++.|+ .-..+.+..++ +.|++.|..+++.+.+..+..++. ++|.||+ |.|
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~--~~d~vi~-g~~ 57 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFE--DADIAIV-ATY 57 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhc--cCCEEEE-EeC
Confidence 45555 22234555555 455567888888765434444554 7899988 543
No 487
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=47.45 E-value=1.3e+02 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
..+.|.|+|-..+....+...|...|+.+..+.
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~ 35 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFA 35 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeec
Confidence 445688998877788889999999999988775
No 488
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=47.28 E-value=1.2e+02 Score=22.87 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHHH-------HhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~~-------~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
.+.+.+++.|+.+.+...+ .+.+. +...++||+|+.+ ..+ ....+.+..+ ..++|++.+
T Consensus 20 ~i~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~dgii~~~-~~~----~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 20 GAQKEAKELGYELTVLDAQ-NDAAKQLNDIEDLITRGVDAIIINP-TDS----DAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHcCceEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEcC-CCh----HHHHHHHHHHHHCCCcEEEE
Confidence 3556777789888776543 22221 2234799999853 211 1122333433 356777655
No 489
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.23 E-value=89 Score=21.26 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=34.1
Q ss_pred HHHHHHHcCCEEEEEeC-CC---CC-HHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCCEE
Q 031223 40 LCQYMGELGYHFEVYRN-DE---LT-VEELKR-KNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLF 101 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~-~~---~~-~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~PvL 101 (163)
-.++|++.|++++.+.. .+ .. .+.+.. .++|.||..+.+........--..||+ .+.++|++
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEE
Confidence 45678888988876532 11 11 233456 689999987754331111111123444 36789976
No 490
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=47.22 E-value=1.5e+02 Score=24.43 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=42.4
Q ss_pred CeEEEEECCCC---hHHHHHHHHHHcCCEEEE--EeCCC--CCHHHH-------hccCC---CEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE--LTVEEL-------KRKNP---RGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v--~~~~~--~~~~~~-------~~~~~---dgvvl~GG~~~~~d~~~~ 87 (163)
.+++||-.... +...+.+.|++.|+++.+ ++..+ .+.+.+ ...++ |.||-.|| +++.|....
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D~ak~ 103 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVVGDLAGF 103 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHHHhHHHH
Confidence 56777742212 334466677777766653 33211 122222 12234 88887777 666666544
Q ss_pred HHHHHHhCCCCCEEEEeh
Q 031223 88 LQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 88 ~~~i~~~~~~~PvLGIC~ 105 (163)
...+ +.+++|+..|.=
T Consensus 104 vA~~--~~rgip~i~VPT 119 (345)
T cd08195 104 VAAT--YMRGIDFIQIPT 119 (345)
T ss_pred HHHH--HhcCCCeEEcch
Confidence 3322 246789888773
No 491
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.18 E-value=1.8e+02 Score=25.22 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=25.2
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
..+|+|+..+.+-.. +++.|.+.|+.+...+.
T Consensus 7 ~~~i~v~G~G~sG~s-~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESGLA-MARWCARHGARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhHHH-HHHHHHHCCCEEEEEcC
Confidence 357999998766543 88999999998887763
No 492
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=46.89 E-value=1.7e+02 Score=24.38 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=38.5
Q ss_pred hhHHhhhcCC-CCCeEEEE-ECCCChHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hcc---CCCEEEeCCCC
Q 031223 13 LYLDDKKSKN-NKNPIIVI-DNYDSFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRK---NPRGVLISPGP 78 (163)
Q Consensus 13 ~~~~~~~~~~-~~~~Ilvi-d~~~~~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~---~~dgvvl~GG~ 78 (163)
.+-+.++..+ .+.+++|+ |.. -....+.+.|+..|.++.++..- +.+.+.+ ... ++|.||=.||
T Consensus 13 ~l~~~~~~~g~~~~~~lvvtd~~-~~~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG- 90 (347)
T cd08184 13 QLNDLLAPKRKNKDPAVFFVDDV-FQGKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG- 90 (347)
T ss_pred HHHHHHHHcCCCCCeEEEEECcc-hhhhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-
Confidence 3334444443 23445554 322 12345777888888887776311 1222222 223 7899996677
Q ss_pred CCCCCChhH
Q 031223 79 GAPQDSGIS 87 (163)
Q Consensus 79 ~~~~d~~~~ 87 (163)
+++-|..+.
T Consensus 91 GS~iD~AKa 99 (347)
T cd08184 91 GSTLDVAKA 99 (347)
T ss_pred cHHHHHHHH
Confidence 555555443
No 493
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=46.86 E-value=1.7e+02 Score=24.28 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=41.4
Q ss_pred hhcCCCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCCCHHHH-------hccCCCEEEeCCCCCCCCCChhH
Q 031223 18 KKSKNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 18 ~~~~~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
++..+...+++||-....+ ...+.+.|++.| ++.++-....+.+.+ ...++|.||-.|| +++.|..+.
T Consensus 28 l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~ 105 (350)
T PRK00843 28 CSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKL 105 (350)
T ss_pred HHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHH
Confidence 3443333567777433232 233556676666 544332112333332 1236899996676 455554443
Q ss_pred HHHHHHhCCCCCEEEEe
Q 031223 88 LQTVLELGPTVPLFGVC 104 (163)
Q Consensus 88 ~~~i~~~~~~~PvLGIC 104 (163)
.. +.+++|+.-|-
T Consensus 106 vA----~~rgip~I~IP 118 (350)
T PRK00843 106 AA----YRLGIPFISVP 118 (350)
T ss_pred HH----HhcCCCEEEeC
Confidence 32 23567877665
No 494
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=46.84 E-value=1.1e+02 Score=25.01 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=42.4
Q ss_pred CeEEEEECCCChHHHHHHHH-HHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l-~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
++|+|+|....+...+.+.| +..++++.....+.. ..+.+....+|.|++--. .+... -...+.+++ .+..|++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~--mp~~~G~e~l~~l~~-~~~~pvi 77 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPPDVILMDLE--MPRMDGVEATRRIMA-ERPCPIL 77 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccCCCEEEEcCC--CCCCCHHHHHHHHHH-HCCCcEE
Confidence 47999987655666677888 456766643332211 122233347898877221 12211 123444444 2448888
Q ss_pred EEehH
Q 031223 102 GVCMG 106 (163)
Q Consensus 102 GIC~G 106 (163)
-++-.
T Consensus 78 vvs~~ 82 (337)
T PRK12555 78 IVTSL 82 (337)
T ss_pred EEeCC
Confidence 88753
No 495
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=46.68 E-value=1e+02 Score=26.07 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCC-CCHHHHhccCCCEEEe
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDE-LTVEELKRKNPRGVLI 74 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~-~~~~~~~~~~~dgvvl 74 (163)
.+||+|||.-......+.+.|...+ +++.-...+- ...+.+....+|-|.+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~l 53 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITL 53 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEE
Confidence 3689999974434666777777776 5554443321 0122333457886665
No 496
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=46.58 E-value=18 Score=31.00 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=30.8
Q ss_pred HhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE-------------ehHHHHHHHH
Q 031223 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (163)
Q Consensus 64 ~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------C~G~QlLa~a 113 (163)
+...+.|++|+.||.++......+.+.+++..-++|+.|| |+|+.--+..
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~ 170 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQ 170 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHH
Confidence 3445899999999976544333333333332224666665 9999876554
No 497
>PRK08227 autoinducer 2 aldolase; Validated
Probab=46.18 E-value=38 Score=27.35 Aligned_cols=94 Identities=15% Similarity=0.048 Sum_probs=50.2
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCC--Ch-HHH---HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYD--SF-TYN---LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~--~~-~~~---~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~ 81 (163)
+..+...++.++..++...+ +.--+. +. ... ..|.-.++|+++.=+++...+++++-..-+--||+.|||..
T Consensus 126 l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~- 203 (264)
T PRK08227 126 IKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKL- 203 (264)
T ss_pred HHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCC-
Confidence 44555666777777766422 321111 11 112 33444578988776655322344443334567999999876
Q ss_pred CCChhHHHHHHH-hCCCCCEEEEehH
Q 031223 82 QDSGISLQTVLE-LGPTVPLFGVCMG 106 (163)
Q Consensus 82 ~d~~~~~~~i~~-~~~~~PvLGIC~G 106 (163)
.+ .++.+.+++ ++.+ --|||.|
T Consensus 204 ~~-~~~L~~v~~ai~aG--a~Gv~~G 226 (264)
T PRK08227 204 PE-RDALEMCYQAIDEG--ASGVDMG 226 (264)
T ss_pred CH-HHHHHHHHHHHHcC--Cceeeec
Confidence 33 345555555 3322 3577766
No 498
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=46.11 E-value=1.7e+02 Score=24.08 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCC---CCHHHHh------ccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDE---LTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~------~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
.+++||-..... ...+.+.|++.|+++.++..+. .+.+.+. ..++|.||-.|| +++.|..+....
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~~~d~IIaiGG-Gsv~D~aK~iA~-- 101 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDKDTEFLLGIGS-GTIIDLVKFVSF-- 101 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhcCCCEEEEECC-cHHHHHHHHHHH--
Confidence 467777432222 2346677888888776654221 1233221 127899997777 566665554432
Q ss_pred HhCCCCCEEEEe
Q 031223 93 ELGPTVPLFGVC 104 (163)
Q Consensus 93 ~~~~~~PvLGIC 104 (163)
.+++|+..|.
T Consensus 102 --~~gip~I~VP 111 (332)
T cd08549 102 --KVGKPFISVP 111 (332)
T ss_pred --HcCCCEEEeC
Confidence 3468888776
No 499
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=46.10 E-value=1.5e+02 Score=23.52 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=30.6
Q ss_pred CeEEEE--ECCCChHH----HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvi--d~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
..|.++ +..+.|-. .+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 356666 32333333 35566777899988776532111 1122347999999764
No 500
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=45.83 E-value=18 Score=32.33 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=28.8
Q ss_pred ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE---------------ehHHHHHHHH
Q 031223 66 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA 113 (163)
Q Consensus 66 ~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI---------------C~G~QlLa~a 113 (163)
..+.|++|+-||.++......+.+..++...++|+.|| |+|+.-.+..
T Consensus 162 ~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~ 224 (555)
T PRK07085 162 KLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKT 224 (555)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHH
Confidence 34789999999976544433333333332234566654 8888766654
Done!