Query 031223
Match_columns 163
No_of_seqs 192 out of 1486
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 100.0 1.7E-29 5.8E-34 192.3 16.5 132 27-161 4-140 (195)
2 1i1q_B Anthranilate synthase c 100.0 5.4E-29 1.8E-33 189.0 13.8 133 25-162 1-137 (192)
3 1wl8_A GMP synthase [glutamine 100.0 9E-28 3.1E-32 181.6 16.9 131 25-161 1-132 (189)
4 2a9v_A GMP synthase; structura 99.9 2E-27 6.7E-32 183.4 11.4 129 25-162 14-146 (212)
5 2vpi_A GMP synthase; guanine m 99.9 1.2E-27 4E-32 185.5 10.2 134 23-162 23-157 (218)
6 3tqi_A GMP synthase [glutamine 99.9 1.1E-27 3.9E-32 206.5 11.0 133 24-162 10-151 (527)
7 1gpm_A GMP synthetase, XMP ami 99.9 1.6E-26 5.4E-31 199.3 14.1 134 23-162 6-148 (525)
8 3uow_A GMP synthetase; structu 99.9 3.8E-26 1.3E-30 198.0 14.6 135 25-162 8-176 (556)
9 3m3p_A Glutamine amido transfe 99.9 1.6E-26 5.6E-31 182.5 11.1 135 23-162 2-145 (250)
10 2ywb_A GMP synthase [glutamine 99.9 1.3E-26 4.5E-31 198.8 11.1 130 26-162 1-131 (503)
11 3l7n_A Putative uncharacterize 99.9 1.8E-25 6.2E-30 174.7 13.0 135 25-162 1-148 (236)
12 1o1y_A Conserved hypothetical 99.9 6.8E-25 2.3E-29 172.0 13.4 139 19-162 7-155 (239)
13 2vxo_A GMP synthase [glutamine 99.9 1E-25 3.5E-30 199.4 9.3 134 22-162 27-162 (697)
14 3r75_A Anthranilate/para-amino 99.9 7.6E-25 2.6E-29 192.4 11.4 133 21-161 443-581 (645)
15 1a9x_B Carbamoyl phosphate syn 99.9 8.2E-23 2.8E-27 169.6 15.0 126 24-162 190-316 (379)
16 4gud_A Imidazole glycerol phos 99.9 9.8E-24 3.3E-28 161.7 7.4 130 23-162 1-155 (211)
17 3fij_A LIN1909 protein; 11172J 99.9 1E-21 3.4E-26 155.1 11.8 120 38-162 31-183 (254)
18 1ka9_H Imidazole glycerol phos 99.8 2.2E-21 7.5E-26 147.8 6.4 124 24-161 2-146 (200)
19 2ywj_A Glutamine amidotransfer 99.8 4.2E-21 1.5E-25 144.4 6.1 123 25-162 1-134 (186)
20 3d54_D Phosphoribosylformylgly 99.8 2.6E-20 9E-25 142.4 9.6 127 24-158 2-143 (213)
21 1l9x_A Gamma-glutamyl hydrolas 99.8 1.7E-19 5.9E-24 146.5 11.1 140 21-162 27-197 (315)
22 2v4u_A CTP synthase 2; pyrimid 99.8 2.6E-20 9E-25 149.7 6.2 109 10-119 11-141 (289)
23 2nv0_A Glutamine amidotransfer 99.8 5.8E-20 2E-24 139.2 6.1 124 25-161 2-139 (196)
24 1gpw_B Amidotransferase HISH; 99.8 1.7E-19 5.8E-24 137.2 5.4 128 25-162 1-146 (201)
25 1q7r_A Predicted amidotransfer 99.8 2.4E-19 8.1E-24 138.5 3.2 127 22-161 21-161 (219)
26 2iss_D Glutamine amidotransfer 99.7 1.8E-18 6.1E-23 132.5 5.7 130 20-162 16-160 (208)
27 2w7t_A CTP synthetase, putativ 99.7 2.1E-18 7.3E-23 137.5 5.9 132 25-161 9-187 (273)
28 1jvn_A Glutamine, bifunctional 99.7 1.2E-18 4E-23 151.1 3.4 127 25-161 5-154 (555)
29 3nva_A CTP synthase; rossman f 99.7 8.3E-18 2.8E-22 143.7 8.0 112 5-119 272-401 (535)
30 2h2w_A Homoserine O-succinyltr 99.7 1.1E-16 3.9E-21 129.6 10.7 132 24-159 47-206 (312)
31 2vdj_A Homoserine O-succinyltr 99.7 1.7E-16 5.7E-21 128.1 11.0 131 25-158 36-194 (301)
32 1vco_A CTP synthetase; tetrame 99.7 3.4E-17 1.2E-21 141.3 7.1 116 5-122 281-409 (550)
33 2ywd_A Glutamine amidotransfer 99.7 1.5E-17 5E-22 125.2 3.5 124 24-161 2-141 (191)
34 1s1m_A CTP synthase; CTP synth 99.7 5.5E-17 1.9E-21 139.8 6.7 114 5-122 270-397 (545)
35 2abw_A PDX2 protein, glutamina 99.6 6.7E-16 2.3E-20 119.4 6.4 131 23-161 2-158 (227)
36 3ugj_A Phosphoribosylformylgly 99.2 1.9E-10 6.6E-15 107.4 12.1 132 23-159 1046-1206(1303)
37 1fy2_A Aspartyl dipeptidase; s 98.9 2.8E-10 9.4E-15 88.3 3.0 89 23-113 30-129 (229)
38 4hcj_A THIJ/PFPI domain protei 98.9 2.6E-09 8.7E-14 79.8 7.1 75 39-113 26-117 (177)
39 1oi4_A Hypothetical protein YH 98.9 8.3E-09 2.8E-13 77.6 8.6 93 21-113 20-134 (193)
40 3l4e_A Uncharacterized peptida 98.9 1.6E-09 5.5E-14 82.8 4.7 88 24-113 27-129 (206)
41 3l18_A Intracellular protease 98.7 1.8E-08 6.2E-13 73.7 5.2 90 24-113 2-111 (168)
42 1vhq_A Enhancing lycopene bios 98.6 5.5E-08 1.9E-12 75.1 7.1 93 25-117 7-154 (232)
43 2rk3_A Protein DJ-1; parkinson 98.6 1.1E-07 3.8E-12 71.4 7.2 91 23-113 2-115 (197)
44 3l3b_A ES1 family protein; ssg 98.6 1.5E-07 5.2E-12 73.5 8.0 91 24-114 23-168 (242)
45 4e08_A DJ-1 beta; flavodoxin-l 98.6 7.8E-08 2.7E-12 71.9 5.4 91 22-113 3-116 (190)
46 2ab0_A YAJL; DJ-1/THIJ superfa 98.5 1.3E-07 4.3E-12 71.7 5.7 89 25-113 3-116 (205)
47 2vrn_A Protease I, DR1199; cys 98.5 3.2E-07 1.1E-11 68.3 7.4 90 23-113 8-124 (190)
48 3f5d_A Protein YDEA; unknow pr 98.4 9.6E-07 3.3E-11 67.1 7.8 88 25-113 4-109 (206)
49 1u9c_A APC35852; structural ge 98.4 7.5E-07 2.5E-11 68.0 6.9 75 39-113 33-138 (224)
50 3cne_A Putative protease I; st 98.4 6.1E-07 2.1E-11 66.0 5.9 88 24-113 2-120 (175)
51 3efe_A THIJ/PFPI family protei 98.3 1.2E-06 4.2E-11 66.6 7.2 89 25-113 6-121 (212)
52 3ot1_A 4-methyl-5(B-hydroxyeth 98.3 2E-07 6.8E-12 70.8 2.5 92 22-113 7-121 (208)
53 2fex_A Conserved hypothetical 98.3 8.3E-07 2.8E-11 66.1 5.7 89 25-113 2-110 (188)
54 3ej6_A Catalase-3; heme, hydro 98.3 2.5E-06 8.5E-11 75.2 9.5 91 23-113 536-646 (688)
55 3uk7_A Class I glutamine amido 98.3 9E-07 3.1E-11 73.2 5.9 92 21-113 9-137 (396)
56 3uk7_A Class I glutamine amido 98.2 3E-06 1E-10 70.0 7.9 91 22-113 203-330 (396)
57 3n7t_A Macrophage binding prot 98.2 1.7E-06 5.8E-11 67.7 4.8 74 40-113 40-154 (247)
58 3er6_A Putative transcriptiona 98.1 3.1E-06 1.1E-10 64.2 5.8 90 22-113 6-124 (209)
59 3ttv_A Catalase HPII; heme ori 98.1 1.8E-06 6.3E-11 76.6 4.9 89 23-113 599-708 (753)
60 3gra_A Transcriptional regulat 98.1 2.8E-06 9.4E-11 64.2 5.2 89 24-113 5-117 (202)
61 3kkl_A Probable chaperone prot 98.1 3.3E-06 1.1E-10 65.9 5.1 74 40-113 34-147 (244)
62 3fse_A Two-domain protein cont 98.1 4.3E-06 1.5E-10 68.9 5.8 89 24-113 10-121 (365)
63 1rw7_A YDR533CP; alpha-beta sa 98.1 3.8E-06 1.3E-10 65.2 5.1 74 40-113 34-147 (243)
64 3noq_A THIJ/PFPI family protei 98.0 6.5E-06 2.2E-10 63.5 5.9 88 23-113 4-113 (231)
65 2iuf_A Catalase; oxidoreductas 98.0 1.4E-05 4.7E-10 70.6 8.0 92 22-113 527-648 (688)
66 3ewn_A THIJ/PFPI family protei 97.9 1.3E-05 4.4E-10 62.8 5.5 89 23-113 22-133 (253)
67 1sy7_A Catalase 1; heme oxidat 97.9 9.8E-06 3.4E-10 72.0 5.0 92 23-115 533-646 (715)
68 1n57_A Chaperone HSP31, protei 97.8 1.8E-05 6.2E-10 63.1 4.6 75 40-114 81-195 (291)
69 3mgk_A Intracellular protease/ 97.8 7.8E-06 2.7E-10 62.2 2.3 89 23-113 3-113 (211)
70 4gdh_A DJ-1, uncharacterized p 97.6 7.7E-05 2.6E-09 55.9 5.0 87 26-113 6-122 (194)
71 3bhn_A THIJ/PFPI domain protei 97.4 7.3E-05 2.5E-09 57.9 3.2 84 25-113 21-128 (236)
72 3en0_A Cyanophycinase; serine 96.9 0.0005 1.7E-08 54.9 3.3 104 7-112 41-160 (291)
73 1t0b_A THUA-like protein; treh 96.4 0.18 6.1E-06 39.1 14.5 129 21-154 4-153 (252)
74 3grc_A Sensor protein, kinase; 96.0 0.018 6.2E-07 39.0 6.1 88 20-108 2-91 (140)
75 3eod_A Protein HNR; response r 95.9 0.044 1.5E-06 36.5 7.7 83 22-105 5-87 (130)
76 2qxy_A Response regulator; reg 95.7 0.016 5.6E-07 39.4 4.9 82 22-106 2-84 (142)
77 2gkg_A Response regulator homo 95.5 0.016 5.6E-07 38.2 4.4 83 21-103 2-86 (127)
78 1z0s_A Probable inorganic poly 95.2 0.054 1.8E-06 42.8 7.1 71 25-107 30-101 (278)
79 3jte_A Response regulator rece 95.0 0.071 2.4E-06 36.1 6.4 82 23-105 2-85 (143)
80 2rdm_A Response regulator rece 94.9 0.12 4.1E-06 34.3 7.3 83 23-105 4-87 (132)
81 3snk_A Response regulator CHEY 94.9 0.026 8.8E-07 38.1 3.8 86 19-105 9-95 (135)
82 2rjn_A Response regulator rece 94.8 0.085 2.9E-06 36.3 6.5 83 23-106 6-88 (154)
83 3i42_A Response regulator rece 94.8 0.044 1.5E-06 36.4 4.8 79 24-104 3-84 (127)
84 3cg4_A Response regulator rece 94.7 0.058 2E-06 36.4 5.4 83 22-105 5-89 (142)
85 2qr3_A Two-component system re 94.7 0.055 1.9E-06 36.4 5.2 82 24-105 3-88 (140)
86 3gt7_A Sensor protein; structu 94.7 0.09 3.1E-06 36.4 6.3 81 23-104 6-88 (154)
87 3hv2_A Response regulator/HD d 94.7 0.073 2.5E-06 36.7 5.8 84 21-105 11-94 (153)
88 2zay_A Response regulator rece 94.6 0.058 2E-06 36.7 5.1 83 22-105 6-90 (147)
89 2pln_A HP1043, response regula 94.4 0.094 3.2E-06 35.2 5.8 79 21-105 15-94 (137)
90 3cnb_A DNA-binding response re 94.4 0.077 2.6E-06 35.7 5.3 84 21-105 5-92 (143)
91 1srr_A SPO0F, sporulation resp 94.3 0.097 3.3E-06 34.5 5.6 81 23-105 2-83 (124)
92 3hzh_A Chemotaxis response reg 94.3 0.097 3.3E-06 36.3 5.8 82 23-105 35-119 (157)
93 3nhm_A Response regulator; pro 94.2 0.13 4.4E-06 34.2 6.2 81 22-105 2-85 (133)
94 2j48_A Two-component sensor ki 94.2 0.11 3.7E-06 33.4 5.5 80 25-105 2-83 (119)
95 1qkk_A DCTD, C4-dicarboxylate 94.1 0.12 4.1E-06 35.6 5.9 81 24-105 3-83 (155)
96 3cfy_A Putative LUXO repressor 94.0 0.14 4.9E-06 34.6 6.2 80 23-104 3-83 (137)
97 3h5i_A Response regulator/sens 94.0 0.18 6.1E-06 34.1 6.7 81 23-104 4-85 (140)
98 3kto_A Response regulator rece 93.9 0.025 8.7E-07 38.3 2.1 80 20-105 2-88 (136)
99 3lua_A Response regulator rece 93.9 0.079 2.7E-06 35.8 4.6 81 23-105 3-89 (140)
100 3lte_A Response regulator; str 93.9 0.04 1.4E-06 36.8 3.0 55 20-74 2-56 (132)
101 3f6c_A Positive transcription 93.9 0.23 7.9E-06 32.9 7.0 81 25-107 2-84 (134)
102 3pzy_A MOG; ssgcid, seattle st 93.9 0.078 2.7E-06 38.5 4.7 88 22-117 5-109 (164)
103 3cg0_A Response regulator rece 93.8 0.14 4.8E-06 34.3 5.7 83 22-105 7-90 (140)
104 1mvo_A PHOP response regulator 93.8 0.18 6.2E-06 33.6 6.2 81 23-105 2-83 (136)
105 4e5v_A Putative THUA-like prot 93.7 1.2 4E-05 35.0 11.6 81 23-107 3-96 (281)
106 3to5_A CHEY homolog; alpha(5)b 93.6 0.15 5.3E-06 35.5 5.7 81 22-104 10-94 (134)
107 3gl9_A Response regulator; bet 93.5 0.28 9.6E-06 32.3 6.7 80 24-105 2-84 (122)
108 3kht_A Response regulator; PSI 93.5 0.14 4.9E-06 34.6 5.3 81 23-105 4-89 (144)
109 3crn_A Response regulator rece 93.3 0.22 7.6E-06 33.2 6.1 79 24-104 3-82 (132)
110 3hdg_A Uncharacterized protein 93.3 0.12 4.1E-06 34.6 4.7 82 23-105 6-87 (137)
111 3f6p_A Transcriptional regulat 93.3 0.35 1.2E-05 31.7 6.9 79 24-105 2-81 (120)
112 1dbw_A Transcriptional regulat 93.3 0.32 1.1E-05 32.0 6.7 81 23-105 2-83 (126)
113 3kcn_A Adenylate cyclase homol 93.2 0.18 6.1E-06 34.5 5.6 84 21-106 1-85 (151)
114 2b4a_A BH3024; flavodoxin-like 93.1 0.17 5.9E-06 33.9 5.2 84 20-104 11-95 (138)
115 3kbq_A Protein TA0487; structu 93.1 0.35 1.2E-05 35.4 7.1 86 25-115 4-107 (172)
116 3rqi_A Response regulator prot 93.0 0.17 5.7E-06 36.2 5.3 82 22-105 5-87 (184)
117 1u0t_A Inorganic polyphosphate 93.0 0.18 6.2E-06 40.0 5.9 76 25-106 5-108 (307)
118 3hdv_A Response regulator; PSI 92.9 0.16 5.4E-06 34.0 4.8 82 23-105 6-89 (136)
119 1yio_A Response regulatory pro 92.9 0.2 6.8E-06 36.3 5.7 82 22-105 2-84 (208)
120 1k68_A Phytochrome response re 92.9 0.32 1.1E-05 32.2 6.4 81 24-105 2-93 (140)
121 3cz5_A Two-component response 92.8 0.28 9.5E-06 33.5 6.0 81 24-105 5-87 (153)
122 4e7p_A Response regulator; DNA 92.8 0.25 8.6E-06 33.7 5.8 83 23-106 19-103 (150)
123 2g2c_A Putative molybdenum cof 92.8 0.32 1.1E-05 35.1 6.5 84 23-115 4-110 (167)
124 2qsj_A DNA-binding response re 92.6 0.2 6.9E-06 34.3 5.1 82 24-106 3-87 (154)
125 3t6k_A Response regulator rece 92.6 0.36 1.2E-05 32.4 6.4 81 23-105 3-86 (136)
126 2an1_A Putative kinase; struct 92.6 0.37 1.3E-05 37.6 7.2 75 25-106 6-96 (292)
127 2pl1_A Transcriptional regulat 92.6 0.48 1.6E-05 30.6 6.8 79 25-105 1-80 (121)
128 1kgs_A DRRD, DNA binding respo 92.6 0.32 1.1E-05 35.5 6.5 80 24-105 2-82 (225)
129 3heb_A Response regulator rece 92.5 0.24 8.1E-06 33.9 5.4 82 22-105 2-97 (152)
130 3rfq_A Pterin-4-alpha-carbinol 92.5 0.52 1.8E-05 34.9 7.4 68 23-94 29-114 (185)
131 3r0j_A Possible two component 92.5 0.32 1.1E-05 36.5 6.5 83 21-105 20-103 (250)
132 3a10_A Response regulator; pho 92.4 0.5 1.7E-05 30.3 6.7 78 25-104 2-80 (116)
133 1tmy_A CHEY protein, TMY; chem 92.4 0.27 9.2E-06 31.9 5.3 80 24-105 2-83 (120)
134 2qvg_A Two component response 92.4 0.15 5.2E-06 34.3 4.2 82 23-105 6-97 (143)
135 1ys7_A Transcriptional regulat 92.2 0.37 1.3E-05 35.4 6.5 80 23-104 6-86 (233)
136 1k66_A Phytochrome response re 92.1 0.28 9.6E-06 32.9 5.3 83 22-105 4-100 (149)
137 2ayx_A Sensor kinase protein R 92.1 0.47 1.6E-05 35.9 7.1 82 23-105 128-209 (254)
138 2r47_A Uncharacterized protein 92.1 0.027 9.4E-07 40.7 -0.0 78 24-105 26-125 (157)
139 1xhf_A DYE resistance, aerobic 91.7 0.58 2E-05 30.4 6.4 78 24-104 3-81 (123)
140 2qv7_A Diacylglycerol kinase D 91.5 1.2 4.1E-05 35.4 9.2 97 12-115 13-125 (337)
141 1zgz_A Torcad operon transcrip 91.4 0.45 1.5E-05 30.9 5.5 78 24-104 2-80 (122)
142 2gwr_A DNA-binding response re 91.1 0.84 2.9E-05 33.8 7.4 79 24-105 5-84 (238)
143 4dad_A Putative pilus assembly 91.1 0.24 8.2E-06 33.5 4.0 82 22-105 18-103 (146)
144 3rht_A (gatase1)-like protein; 90.9 0.75 2.6E-05 35.8 7.1 76 25-103 5-85 (259)
145 2i2c_A Probable inorganic poly 90.9 0.43 1.5E-05 37.1 5.7 63 25-106 1-70 (272)
146 1di6_A MOGA, molybdenum cofact 90.8 0.45 1.6E-05 35.4 5.6 69 24-93 3-90 (195)
147 2zki_A 199AA long hypothetical 90.5 2.3 7.7E-05 30.6 9.2 77 25-104 5-114 (199)
148 3iwt_A 178AA long hypothetical 90.5 1.4 4.7E-05 31.8 7.9 69 22-93 13-105 (178)
149 3ff4_A Uncharacterized protein 90.4 2.3 7.8E-05 29.1 8.6 32 25-56 5-39 (122)
150 1y5e_A Molybdenum cofactor bio 90.4 1 3.5E-05 32.5 7.0 68 24-94 13-97 (169)
151 3mm4_A Histidine kinase homolo 90.2 0.82 2.8E-05 33.3 6.6 82 22-105 59-159 (206)
152 2gk3_A Putative cytoplasmic pr 90.2 0.33 1.1E-05 37.4 4.5 64 38-103 43-124 (256)
153 2is8_A Molybdopterin biosynthe 90.1 0.82 2.8E-05 32.8 6.3 59 33-94 19-87 (164)
154 1jbe_A Chemotaxis protein CHEY 90.1 0.85 2.9E-05 29.8 6.0 81 23-105 3-87 (128)
155 3c3m_A Response regulator rece 89.9 1 3.5E-05 30.0 6.5 79 25-105 4-85 (138)
156 3n53_A Response regulator rece 89.8 0.45 1.5E-05 31.9 4.5 80 24-105 3-84 (140)
157 2ark_A Flavodoxin; FMN, struct 89.6 2.4 8.2E-05 30.5 8.6 78 25-105 5-96 (188)
158 3ilh_A Two component response 89.4 0.69 2.4E-05 30.9 5.2 81 23-105 8-100 (146)
159 3hly_A Flavodoxin-like domain; 89.4 2.2 7.6E-05 30.0 8.2 78 25-104 1-89 (161)
160 1rtt_A Conserved hypothetical 89.4 2 7E-05 30.9 8.1 84 21-105 3-116 (193)
161 3eqz_A Response regulator; str 88.8 0.28 9.5E-06 32.4 2.8 89 23-117 2-101 (135)
162 3qvl_A Putative hydantoin race 88.8 2.5 8.5E-05 32.3 8.5 89 25-120 2-114 (245)
163 2fz5_A Flavodoxin; alpha/beta 88.7 3.9 0.00013 27.3 10.1 76 26-104 1-87 (137)
164 1mkz_A Molybdenum cofactor bio 88.6 1.3 4.4E-05 32.0 6.5 67 24-93 10-93 (172)
165 1iow_A DD-ligase, DDLB, D-ALA\ 88.4 2 6.7E-05 32.9 7.8 52 24-75 2-61 (306)
166 3q9s_A DNA-binding response re 88.4 0.97 3.3E-05 34.0 5.9 81 22-105 35-116 (249)
167 2a9o_A Response regulator; ess 88.1 1.3 4.3E-05 28.4 5.7 78 25-105 2-80 (120)
168 2qzj_A Two-component response 88.1 0.35 1.2E-05 32.5 2.9 79 23-104 3-82 (136)
169 3m6m_D Sensory/regulatory prot 87.9 0.28 9.5E-06 33.4 2.3 82 22-105 12-98 (143)
170 2oqr_A Sensory transduction pr 87.8 1.2 4.2E-05 32.5 6.1 80 24-106 4-84 (230)
171 2lpm_A Two-component response 87.8 0.16 5.3E-06 35.0 1.0 77 23-103 7-85 (123)
172 3eul_A Possible nitrate/nitrit 87.8 0.95 3.2E-05 30.7 5.1 84 21-105 12-97 (152)
173 2jba_A Phosphate regulon trans 87.4 0.37 1.2E-05 31.5 2.7 80 24-105 2-84 (127)
174 2pbq_A Molybdenum cofactor bio 87.3 2 6.8E-05 31.2 6.8 53 24-79 5-79 (178)
175 2pjk_A 178AA long hypothetical 87.0 1.6 5.3E-05 31.9 6.1 68 23-93 14-105 (178)
176 2hqr_A Putative transcriptiona 86.9 0.87 3E-05 33.2 4.8 77 25-106 1-77 (223)
177 2a5l_A Trp repressor binding p 86.9 6.7 0.00023 28.0 9.8 77 25-104 6-115 (200)
178 3g1w_A Sugar ABC transporter; 86.7 4.9 0.00017 30.3 9.2 54 24-77 4-70 (305)
179 1jlj_A Gephyrin; globular alph 86.7 2.6 8.8E-05 31.0 7.2 67 24-93 14-102 (189)
180 2vzf_A NADH-dependent FMN redu 86.4 1.9 6.6E-05 31.3 6.4 80 25-105 3-110 (197)
181 3b2n_A Uncharacterized protein 86.4 1.3 4.4E-05 29.3 5.1 78 25-104 4-84 (133)
182 1dc7_A NTRC, nitrogen regulati 86.1 0.52 1.8E-05 30.5 2.8 79 24-104 3-82 (124)
183 3eag_A UDP-N-acetylmuramate:L- 86.0 8.6 0.00029 30.2 10.5 55 24-78 4-76 (326)
184 1s8n_A Putative antiterminator 85.9 1.9 6.5E-05 30.9 6.1 80 23-105 12-93 (205)
185 3n0r_A Response regulator; sig 85.8 1.1 3.8E-05 34.8 5.0 79 22-105 158-241 (286)
186 2qv0_A Protein MRKE; structura 85.8 1.5 5.2E-05 29.1 5.2 80 24-105 9-91 (143)
187 3h1g_A Chemotaxis protein CHEY 85.7 2.3 7.9E-05 27.8 6.0 81 23-105 4-89 (129)
188 4eg0_A D-alanine--D-alanine li 85.5 2.4 8.1E-05 33.1 6.9 52 23-74 12-71 (317)
189 1p6q_A CHEY2; chemotaxis, sign 84.8 0.42 1.4E-05 31.4 1.9 82 21-104 3-88 (129)
190 3c97_A Signal transduction his 84.7 0.57 1.9E-05 31.4 2.6 80 24-105 10-95 (140)
191 1uuy_A CNX1, molybdopterin bio 84.6 5.3 0.00018 28.4 7.9 73 24-99 5-102 (167)
192 5nul_A Flavodoxin; electron tr 84.5 2.4 8.3E-05 28.6 5.8 67 35-104 10-86 (138)
193 3fni_A Putative diflavin flavo 84.3 3 0.0001 29.4 6.4 79 24-104 4-94 (159)
194 3m9w_A D-xylose-binding peripl 83.8 4 0.00014 31.1 7.4 73 25-103 3-89 (313)
195 1mb3_A Cell division response 83.4 0.8 2.7E-05 29.6 2.8 79 25-105 2-83 (124)
196 3jy6_A Transcriptional regulat 83.3 10 0.00036 28.1 9.5 74 23-104 6-92 (276)
197 2vyc_A Biodegradative arginine 83.3 2.7 9.1E-05 37.4 6.9 82 25-108 1-96 (755)
198 3eq2_A Probable two-component 83.2 1.5 5.3E-05 35.1 5.0 79 24-104 5-84 (394)
199 3l49_A ABC sugar (ribose) tran 83.0 6.8 0.00023 29.2 8.4 74 24-103 5-92 (291)
200 3rot_A ABC sugar transporter, 83.0 1.5 5E-05 33.5 4.5 54 24-77 3-70 (297)
201 2fn9_A Ribose ABC transporter, 82.9 3.1 0.00011 31.2 6.4 53 24-77 2-67 (290)
202 1ydg_A Trp repressor binding p 82.7 6.8 0.00023 28.4 8.0 34 24-57 6-44 (211)
203 1f4p_A Flavodoxin; electron tr 82.7 3.6 0.00012 28.0 6.1 79 25-106 1-93 (147)
204 3l6u_A ABC-type sugar transpor 82.0 5.7 0.00019 29.7 7.6 74 24-103 8-95 (293)
205 4hv4_A UDP-N-acetylmuramate--L 81.3 13 0.00045 31.1 10.1 55 24-78 22-91 (494)
206 3pfn_A NAD kinase; structural 81.0 5.4 0.00018 32.5 7.4 77 24-107 38-142 (365)
207 1dz3_A Stage 0 sporulation pro 80.9 2.6 8.8E-05 27.5 4.7 79 24-104 2-84 (130)
208 1i3c_A Response regulator RCP1 80.6 6.3 0.00022 26.4 6.8 81 23-105 7-99 (149)
209 1ehs_A STB, heat-stable entero 80.6 0.15 5.1E-06 28.2 -1.4 17 99-115 31-47 (48)
210 2r25_B Osmosensing histidine p 80.5 5.6 0.00019 26.1 6.4 79 24-104 2-88 (133)
211 3uug_A Multiple sugar-binding 80.4 12 0.00042 28.4 9.1 53 24-77 3-68 (330)
212 1zh2_A KDP operon transcriptio 79.3 1.1 3.9E-05 28.7 2.4 77 25-104 2-79 (121)
213 3tb6_A Arabinose metabolism tr 79.2 14 0.00048 27.4 9.0 77 25-104 16-106 (298)
214 3egc_A Putative ribose operon 78.9 12 0.00041 27.9 8.5 72 24-103 8-93 (291)
215 3o1i_D Periplasmic protein TOR 78.2 4.1 0.00014 30.7 5.6 76 23-103 4-93 (304)
216 1dcf_A ETR1 protein; beta-alph 77.6 2 6.7E-05 28.4 3.2 32 23-54 6-37 (136)
217 3f6r_A Flavodoxin; FMN binding 77.5 6.5 0.00022 26.7 6.1 80 25-106 2-94 (148)
218 3cu5_A Two component transcrip 77.4 3.3 0.00011 27.6 4.4 78 25-104 3-84 (141)
219 2fep_A Catabolite control prot 77.2 18 0.00061 27.1 9.0 52 25-77 17-81 (289)
220 3t8y_A CHEB, chemotaxis respon 76.8 5.4 0.00018 27.4 5.5 79 25-105 26-106 (164)
221 2bon_A Lipid kinase; DAG kinas 76.7 11 0.00038 29.7 8.0 85 25-115 30-129 (332)
222 3cs3_A Sugar-binding transcrip 76.6 4.7 0.00016 30.1 5.5 54 23-77 7-66 (277)
223 1ny5_A Transcriptional regulat 76.5 3.3 0.00011 33.5 4.9 78 25-104 1-79 (387)
224 1g8l_A Molybdopterin biosynthe 76.0 5.8 0.0002 32.7 6.2 56 34-92 203-266 (411)
225 1ag9_A Flavodoxin; electron tr 75.8 17 0.00057 25.6 8.1 78 25-105 1-87 (175)
226 1a04_A Nitrate/nitrite respons 75.5 3.5 0.00012 29.6 4.4 80 24-105 5-87 (215)
227 1eiw_A Hypothetical protein MT 74.3 12 0.00041 25.0 6.5 67 26-103 5-73 (111)
228 2bmv_A Flavodoxin; electron tr 74.2 6.6 0.00023 27.3 5.5 49 26-78 3-53 (164)
229 3ksm_A ABC-type sugar transpor 73.9 20 0.00067 26.3 8.4 52 26-77 2-68 (276)
230 3h75_A Periplasmic sugar-bindi 73.9 25 0.00085 27.1 9.3 74 24-104 3-93 (350)
231 3b6i_A Flavoprotein WRBA; flav 73.5 12 0.00041 26.5 6.8 33 25-57 2-40 (198)
232 2rgy_A Transcriptional regulat 73.2 12 0.00042 28.0 7.1 75 24-104 8-97 (290)
233 3k9c_A Transcriptional regulat 72.6 13 0.00045 27.8 7.2 72 26-104 14-95 (289)
234 1uz5_A MOEA protein, 402AA lon 72.3 5 0.00017 33.0 5.0 57 34-93 206-270 (402)
235 3dzd_A Transcriptional regulat 71.7 4 0.00014 32.9 4.2 76 25-104 1-79 (368)
236 3kke_A LACI family transcripti 71.4 18 0.00062 27.3 7.8 73 25-104 16-101 (303)
237 3bbl_A Regulatory protein of L 71.4 29 0.00099 25.8 10.1 55 23-77 3-73 (287)
238 1p2f_A Response regulator; DRR 70.9 3.8 0.00013 29.6 3.6 73 25-104 3-78 (220)
239 2q62_A ARSH; alpha/beta, flavo 70.9 32 0.0011 26.0 9.0 84 21-105 31-144 (247)
240 8abp_A L-arabinose-binding pro 70.8 4.9 0.00017 30.3 4.4 53 25-77 3-66 (306)
241 3nbm_A PTS system, lactose-spe 70.7 7.6 0.00026 25.8 4.8 76 22-104 4-85 (108)
242 3kyj_B CHEY6 protein, putative 70.1 2.3 7.8E-05 28.4 2.1 84 20-105 9-95 (145)
243 3c3k_A Alanine racemase; struc 70.0 13 0.00044 27.8 6.6 74 23-104 7-93 (285)
244 3h5o_A Transcriptional regulat 69.4 31 0.0011 26.4 8.9 73 25-103 63-147 (339)
245 2dri_A D-ribose-binding protei 69.2 8.8 0.0003 28.5 5.5 38 40-77 23-66 (271)
246 4ici_A Putative flavoprotein; 69.1 22 0.00076 25.1 7.4 29 24-52 13-43 (171)
247 3afo_A NADH kinase POS5; alpha 68.8 3.1 0.00011 34.2 2.9 75 25-106 42-148 (388)
248 3clk_A Transcription regulator 67.9 31 0.001 25.7 8.4 75 24-104 8-95 (290)
249 3k4h_A Putative transcriptiona 67.9 34 0.0012 25.2 9.2 54 24-78 8-79 (292)
250 1t0i_A YLR011WP; FMN binding p 67.7 9.4 0.00032 27.1 5.1 39 68-107 84-126 (191)
251 1e2b_A Enzyme IIB-cellobiose; 67.6 14 0.00047 24.3 5.5 51 25-76 4-58 (106)
252 2ohh_A Type A flavoprotein FPR 67.2 31 0.0011 27.3 8.6 82 23-105 255-351 (404)
253 2fts_A Gephyrin; gephyrin, neu 66.1 6.8 0.00023 32.4 4.5 55 34-91 207-269 (419)
254 3kjx_A Transcriptional regulat 66.1 21 0.0007 27.5 7.2 73 24-103 68-153 (344)
255 3edo_A Flavoprotein, putative 65.7 14 0.00048 25.4 5.6 29 23-51 2-33 (151)
256 1sqs_A Conserved hypothetical 65.4 39 0.0013 25.0 8.5 33 25-57 2-42 (242)
257 3u3x_A Oxidoreductase; structu 65.3 48 0.0016 26.2 9.3 59 19-77 21-97 (361)
258 3hs3_A Ribose operon repressor 65.0 4.3 0.00015 30.4 2.9 52 24-76 10-75 (277)
259 3brs_A Periplasmic binding pro 64.6 25 0.00085 26.0 7.2 54 24-77 5-74 (289)
260 3s40_A Diacylglycerol kinase; 64.4 47 0.0016 25.6 10.3 85 25-115 9-108 (304)
261 1ykg_A SIR-FP, sulfite reducta 64.3 15 0.00051 25.7 5.5 47 26-74 11-62 (167)
262 2q9u_A A-type flavoprotein; fl 64.0 53 0.0018 26.1 10.5 80 25-105 257-349 (414)
263 2iks_A DNA-binding transcripti 63.8 28 0.00095 25.9 7.4 74 23-103 19-106 (293)
264 1czn_A Flavodoxin; FMN binding 63.7 14 0.00048 25.6 5.3 78 25-105 1-88 (169)
265 3gbv_A Putative LACI-family tr 63.2 26 0.0009 26.0 7.2 54 24-77 8-78 (304)
266 2o20_A Catabolite control prot 62.9 31 0.0011 26.3 7.7 53 24-77 63-128 (332)
267 1a2o_A CHEB methylesterase; ba 62.7 12 0.0004 29.9 5.2 79 24-105 3-84 (349)
268 3e3m_A Transcriptional regulat 62.6 18 0.00063 28.0 6.3 72 25-103 71-155 (355)
269 1vi6_A 30S ribosomal protein S 62.3 40 0.0014 25.2 7.7 86 11-104 56-145 (208)
270 3d8u_A PURR transcriptional re 62.2 39 0.0013 24.6 7.9 53 25-77 4-68 (275)
271 3klb_A Putative flavoprotein; 62.1 17 0.00059 25.3 5.6 79 25-104 5-115 (162)
272 3d02_A Putative LACI-type tran 62.1 15 0.00053 27.4 5.6 54 24-77 4-70 (303)
273 4hs4_A Chromate reductase; tri 62.1 23 0.0008 25.7 6.4 36 20-55 2-44 (199)
274 3soz_A ORF 245 protein, cytopl 62.0 4.8 0.00017 31.0 2.7 36 39-76 37-78 (248)
275 3hn7_A UDP-N-acetylmuramate-L- 61.9 69 0.0024 26.8 10.1 54 25-78 20-90 (524)
276 2x7x_A Sensor protein; transfe 61.8 50 0.0017 25.0 8.9 74 24-103 6-93 (325)
277 1qo0_D AMIR; binding protein, 61.6 15 0.00052 25.7 5.2 76 24-105 12-87 (196)
278 2hsg_A Glucose-resistance amyl 61.5 51 0.0017 25.0 9.6 74 23-104 59-146 (332)
279 1qpz_A PURA, protein (purine n 60.3 36 0.0012 26.1 7.6 74 24-103 58-144 (340)
280 3lk7_A UDP-N-acetylmuramoylala 59.7 55 0.0019 26.7 9.0 32 24-56 9-40 (451)
281 3brq_A HTH-type transcriptiona 59.4 50 0.0017 24.3 8.3 76 23-104 18-108 (296)
282 2fvy_A D-galactose-binding per 59.1 52 0.0018 24.4 8.6 73 26-104 4-91 (309)
283 2vk2_A YTFQ, ABC transporter p 59.0 54 0.0018 24.5 8.6 52 25-77 3-67 (306)
284 1tjy_A Sugar transport protein 58.6 20 0.0007 27.3 5.9 53 25-77 4-69 (316)
285 1rli_A Trp repressor binding p 58.3 30 0.001 24.0 6.3 29 25-54 4-35 (184)
286 3c3w_A Two component transcrip 58.2 4.4 0.00015 29.5 1.8 79 25-105 2-83 (225)
287 3eme_A Rhodanese-like domain p 57.6 29 0.00098 21.9 5.6 46 9-54 41-86 (103)
288 1w25_A Stalked-cell differenti 57.3 10 0.00036 30.7 4.1 78 25-104 2-82 (459)
289 2rjo_A Twin-arginine transloca 57.3 11 0.00038 28.9 4.1 53 24-77 5-72 (332)
290 4fe7_A Xylose operon regulator 57.3 28 0.00097 27.7 6.7 72 24-104 25-104 (412)
291 2h3h_A Sugar ABC transporter, 57.2 48 0.0017 24.9 7.8 59 40-103 22-88 (313)
292 3o74_A Fructose transport syst 56.7 54 0.0018 23.8 9.9 53 25-78 3-68 (272)
293 3huu_A Transcription regulator 56.7 45 0.0015 24.9 7.5 73 24-103 22-112 (305)
294 2i2x_B MTAC, methyltransferase 56.6 59 0.002 24.5 8.1 98 22-120 121-228 (258)
295 2ioy_A Periplasmic sugar-bindi 56.2 47 0.0016 24.5 7.4 37 40-77 23-66 (283)
296 3hcw_A Maltose operon transcri 56.0 36 0.0012 25.4 6.8 39 40-78 34-78 (295)
297 3luf_A Two-component system re 55.5 20 0.0007 26.8 5.3 80 23-104 123-206 (259)
298 3gyb_A Transcriptional regulat 55.1 25 0.00086 25.9 5.7 54 23-77 4-68 (280)
299 1gud_A ALBP, D-allose-binding 54.9 16 0.00055 27.3 4.6 37 40-77 23-68 (288)
300 1o2d_A Alcohol dehydrogenase, 54.2 36 0.0012 27.2 6.8 60 25-85 41-114 (371)
301 1tvm_A PTS system, galactitol- 53.8 33 0.0011 22.6 5.6 54 23-77 20-78 (113)
302 3jvd_A Transcriptional regulat 53.7 10 0.00035 29.3 3.4 53 24-77 64-128 (333)
303 3foj_A Uncharacterized protein 53.5 27 0.00091 22.0 4.9 46 9-54 41-86 (100)
304 2jk1_A HUPR, hydrogenase trans 53.4 15 0.00052 23.9 3.8 77 25-104 2-79 (139)
305 3bch_A 40S ribosomal protein S 53.3 41 0.0014 25.9 6.6 79 19-104 99-181 (253)
306 3d7n_A Flavodoxin, WRBA-like p 53.3 40 0.0014 24.0 6.4 79 24-105 6-99 (193)
307 3g85_A Transcriptional regulat 53.2 25 0.00084 26.1 5.4 74 24-103 11-97 (289)
308 2q5c_A NTRC family transcripti 53.2 56 0.0019 23.7 7.2 36 21-56 1-36 (196)
309 1wu2_A MOEA protein, molybdopt 53.1 14 0.00048 30.2 4.2 44 34-79 210-261 (396)
310 1yob_A Flavodoxin 2, flavodoxi 53.0 41 0.0014 23.6 6.3 47 26-74 2-52 (179)
311 3e61_A Putative transcriptiona 52.7 34 0.0012 25.1 6.1 51 25-76 9-72 (277)
312 3gk5_A Uncharacterized rhodane 52.3 30 0.001 22.2 5.1 46 9-54 40-85 (108)
313 3dbi_A Sugar-binding transcrip 51.5 77 0.0026 24.0 9.6 53 24-77 61-128 (338)
314 2yxb_A Coenzyme B12-dependent 51.4 35 0.0012 23.9 5.7 78 23-101 17-104 (161)
315 3fwz_A Inner membrane protein 51.2 17 0.00059 24.4 3.9 34 23-57 6-39 (140)
316 1obo_A Flavodoxin; electron tr 51.2 53 0.0018 22.5 6.6 78 25-105 2-88 (169)
317 2zkq_b 40S ribosomal protein S 50.3 45 0.0016 26.3 6.5 76 22-104 69-148 (295)
318 3miz_A Putative transcriptiona 50.2 35 0.0012 25.5 5.9 53 24-77 13-79 (301)
319 1ccw_A Protein (glutamate muta 49.9 36 0.0012 23.1 5.4 66 39-107 22-93 (137)
320 3luf_A Two-component system re 49.8 9.4 0.00032 28.7 2.5 76 24-104 4-81 (259)
321 3flh_A Uncharacterized protein 49.6 46 0.0016 21.8 5.8 46 9-54 56-103 (124)
322 3ouz_A Biotin carboxylase; str 49.0 12 0.00042 30.4 3.2 35 20-55 2-36 (446)
323 1t5b_A Acyl carrier protein ph 48.1 68 0.0023 22.4 9.8 33 25-57 2-44 (201)
324 3klo_A Transcriptional regulat 47.8 15 0.0005 26.5 3.2 80 22-105 5-91 (225)
325 3bfj_A 1,3-propanediol oxidore 47.0 75 0.0026 25.3 7.7 65 25-90 34-113 (387)
326 4g65_A TRK system potassium up 46.7 6.4 0.00022 32.8 1.2 54 24-79 3-56 (461)
327 3u5c_A 40S ribosomal protein S 46.6 70 0.0024 24.6 7.0 75 23-104 69-147 (252)
328 3iwh_A Rhodanese-like domain p 46.3 55 0.0019 20.9 5.6 44 9-52 41-84 (103)
329 1dbq_A Purine repressor; trans 45.9 85 0.0029 22.9 10.0 74 24-103 7-93 (289)
330 1jr2_A Uroporphyrinogen-III sy 45.9 12 0.0004 28.7 2.6 91 23-118 20-135 (286)
331 2fzv_A Putative arsenical resi 45.9 72 0.0025 24.7 7.1 83 22-105 56-169 (279)
332 2r85_A PURP protein PF1517; AT 45.6 22 0.00076 27.2 4.1 32 24-57 2-33 (334)
333 2rir_A Dipicolinate synthase, 45.4 33 0.0011 26.3 5.1 34 21-55 4-37 (300)
334 2qh8_A Uncharacterized protein 45.2 40 0.0014 25.4 5.6 72 24-104 8-97 (302)
335 2h0a_A TTHA0807, transcription 45.0 54 0.0018 23.9 6.1 58 40-104 21-85 (276)
336 3bil_A Probable LACI-family tr 44.5 32 0.0011 26.6 5.0 52 25-77 67-131 (348)
337 3iz6_A 40S ribosomal protein S 44.4 59 0.002 25.8 6.3 75 23-104 74-152 (305)
338 1yt5_A Inorganic polyphosphate 44.3 11 0.00038 28.7 2.1 35 67-107 40-74 (258)
339 2oho_A Glutamate racemase; iso 44.2 52 0.0018 25.0 6.0 84 17-106 5-107 (273)
340 3usb_A Inosine-5'-monophosphat 43.4 92 0.0032 26.1 7.9 95 24-120 268-386 (511)
341 3qk7_A Transcriptional regulat 43.0 99 0.0034 22.9 9.1 39 40-78 32-75 (294)
342 2xzm_B RPS0E; ribosome, transl 42.9 18 0.00063 27.6 3.1 78 21-105 63-145 (241)
343 3ezx_A MMCP 1, monomethylamine 42.4 36 0.0012 25.1 4.7 95 24-120 92-201 (215)
344 3fvw_A Putative NAD(P)H-depend 42.3 89 0.0031 22.1 8.5 32 25-56 3-40 (192)
345 2zuv_A Lacto-N-biose phosphory 41.9 38 0.0013 30.1 5.3 112 9-122 421-571 (759)
346 3hn2_A 2-dehydropantoate 2-red 41.5 1.2E+02 0.004 23.2 8.1 30 87-116 85-118 (312)
347 4dim_A Phosphoribosylglycinami 41.3 71 0.0024 25.2 6.6 35 21-56 4-38 (403)
348 3svl_A Protein YIEF; E. coli C 41.1 83 0.0028 22.5 6.5 98 23-121 3-144 (193)
349 3p2o_A Bifunctional protein fo 40.9 1.1E+02 0.0037 23.9 7.3 67 8-74 17-97 (285)
350 3llv_A Exopolyphosphatase-rela 40.6 27 0.00093 23.1 3.5 32 25-57 7-38 (141)
351 2ftc_D Mitochondrial ribosomal 40.4 64 0.0022 23.3 5.6 12 37-48 104-115 (175)
352 3p9x_A Phosphoribosylglycinami 40.0 1.1E+02 0.0038 22.6 7.1 71 4-76 9-89 (211)
353 3d4o_A Dipicolinate synthase s 39.9 51 0.0018 25.1 5.4 35 21-56 2-36 (293)
354 3ce9_A Glycerol dehydrogenase; 39.9 54 0.0018 25.8 5.7 74 26-104 36-119 (354)
355 3uuw_A Putative oxidoreductase 39.9 52 0.0018 25.1 5.4 55 21-77 3-75 (308)
356 2gek_A Phosphatidylinositol ma 39.5 50 0.0017 25.4 5.4 40 18-57 14-61 (406)
357 1y80_A Predicted cobalamin bin 39.2 94 0.0032 22.3 6.6 53 24-77 88-148 (210)
358 4gi5_A Quinone reductase; prot 39.2 48 0.0017 25.6 5.1 36 22-57 20-62 (280)
359 3ius_A Uncharacterized conserv 39.0 84 0.0029 23.1 6.4 56 24-81 5-76 (286)
360 3orq_A N5-carboxyaminoimidazol 38.9 1.4E+02 0.0048 23.5 8.3 34 23-57 11-44 (377)
361 2hna_A Protein MIOC, flavodoxi 38.8 40 0.0014 22.6 4.2 78 26-108 3-93 (147)
362 3gv0_A Transcriptional regulat 38.7 1.1E+02 0.0039 22.4 8.8 54 24-77 8-75 (288)
363 3out_A Glutamate racemase; str 38.6 91 0.0031 23.8 6.6 79 21-104 4-101 (268)
364 1jg7_A BGT, DNA beta-glucosylt 38.2 52 0.0018 25.3 4.9 54 25-78 1-68 (351)
365 1gtz_A 3-dehydroquinate dehydr 38.0 26 0.00089 25.0 3.1 39 40-78 40-82 (156)
366 3sy8_A ROCR; TIM barrel phosph 37.9 13 0.00043 29.9 1.6 51 24-74 3-55 (400)
367 1wv9_A Rhodanese homolog TT165 37.2 43 0.0015 20.6 3.9 41 9-50 39-79 (94)
368 3sho_A Transcriptional regulat 37.2 1E+02 0.0035 21.3 7.5 91 8-105 26-122 (187)
369 2a6a_A Hypothetical protein TM 36.9 15 0.0005 27.5 1.7 45 68-113 66-112 (218)
370 2l82_A Designed protein OR32; 36.9 27 0.00092 23.7 2.9 94 3-104 7-110 (162)
371 3g79_A NDP-N-acetyl-D-galactos 36.8 1.6E+02 0.0055 24.5 8.3 53 23-76 352-422 (478)
372 2yq5_A D-isomer specific 2-hyd 36.8 72 0.0025 25.4 5.9 50 25-75 2-52 (343)
373 1gmx_A GLPE protein; transfera 36.6 75 0.0026 20.0 5.1 39 11-49 45-83 (108)
374 3r2g_A Inosine 5'-monophosphat 36.5 1.7E+02 0.0057 23.5 9.1 106 12-121 102-227 (361)
375 2vvt_A Glutamate racemase; iso 35.7 78 0.0027 24.3 5.9 89 13-107 13-120 (290)
376 3mwd_B ATP-citrate synthase; A 35.7 81 0.0028 25.1 6.0 78 26-107 170-261 (334)
377 3re1_A Uroporphyrinogen-III sy 35.6 63 0.0021 24.3 5.2 56 21-77 138-202 (269)
378 2q3e_A UDP-glucose 6-dehydroge 35.6 1.7E+02 0.0057 24.0 8.2 35 23-57 328-371 (467)
379 2x6q_A Trehalose-synthase TRET 35.5 82 0.0028 24.5 6.1 45 11-56 28-78 (416)
380 3hr4_A Nitric oxide synthase, 35.3 1.2E+02 0.0042 22.4 6.7 49 24-74 40-92 (219)
381 2amj_A Modulator of drug activ 35.3 1.2E+02 0.0042 21.7 6.6 53 25-78 13-79 (204)
382 3ojo_A CAP5O; rossmann fold, c 35.1 1.3E+02 0.0046 24.6 7.5 54 23-77 314-383 (431)
383 3rpe_A MDAB, modulator of drug 34.8 66 0.0023 23.9 5.1 53 25-78 26-92 (218)
384 2bpo_A CPR, P450R, NADPH-cytoc 34.7 1.7E+02 0.0059 25.4 8.4 59 12-74 39-104 (682)
385 2qu7_A Putative transcriptiona 34.7 1.1E+02 0.0036 22.5 6.4 53 25-78 9-73 (288)
386 1byk_A Protein (trehalose oper 34.6 43 0.0015 24.2 4.0 37 40-77 24-67 (255)
387 3lwz_A 3-dehydroquinate dehydr 34.2 1.1E+02 0.0037 21.7 5.8 61 40-103 41-105 (153)
388 3phh_A Shikimate dehydrogenase 34.2 93 0.0032 23.8 6.0 46 9-56 104-149 (269)
389 1a4i_A Methylenetetrahydrofola 34.2 1.7E+02 0.0058 23.0 8.2 56 21-77 162-217 (301)
390 3n8k_A 3-dehydroquinate dehydr 34.1 31 0.0011 25.0 3.0 61 40-103 62-126 (172)
391 2iuy_A Avigt4, glycosyltransfe 34.0 36 0.0012 25.8 3.7 34 24-57 3-56 (342)
392 2l2q_A PTS system, cellobiose- 33.9 95 0.0032 20.0 6.7 51 25-76 5-59 (109)
393 2wc1_A Flavodoxin; electron tr 33.6 52 0.0018 23.0 4.3 47 26-74 3-53 (182)
394 3nxk_A Cytoplasmic L-asparagin 33.2 1.4E+02 0.0049 23.6 7.1 34 68-103 245-280 (334)
395 3i6i_A Putative leucoanthocyan 32.6 1.2E+02 0.004 23.2 6.5 30 24-54 10-40 (346)
396 3u9t_A MCC alpha, methylcroton 32.4 62 0.0021 28.2 5.2 45 12-57 12-60 (675)
397 1id1_A Putative potassium chan 32.3 68 0.0023 21.5 4.5 34 23-57 2-35 (153)
398 1wcw_A Uroporphyrinogen III sy 31.9 34 0.0012 25.4 3.1 54 22-77 6-68 (261)
399 1vlj_A NADH-dependent butanol 31.6 1.4E+02 0.0047 24.1 6.9 61 25-86 44-118 (407)
400 3e8x_A Putative NAD-dependent 31.1 80 0.0027 22.6 5.0 60 21-81 18-97 (236)
401 1b0a_A Protein (fold bifunctio 30.9 1.8E+02 0.0063 22.6 7.2 62 15-77 150-211 (288)
402 3kux_A Putative oxidoreductase 30.6 1.8E+02 0.0061 22.5 7.3 56 21-77 4-76 (352)
403 2jtq_A Phage shock protein E; 30.5 59 0.002 19.5 3.6 41 10-50 25-67 (85)
404 3k5i_A Phosphoribosyl-aminoimi 30.5 59 0.002 26.1 4.5 32 23-55 23-54 (403)
405 4b4u_A Bifunctional protein fo 29.7 1.5E+02 0.0052 23.3 6.6 73 2-74 30-117 (303)
406 3ibs_A Conserved hypothetical 29.5 62 0.0021 22.9 4.1 33 71-106 115-148 (218)
407 1e6u_A GDP-fucose synthetase; 29.5 1.1E+02 0.0038 22.8 5.7 56 24-80 3-67 (321)
408 2g1u_A Hypothetical protein TM 29.2 1E+02 0.0035 20.7 5.1 34 23-57 18-51 (155)
409 3ruf_A WBGU; rossmann fold, UD 29.1 1.9E+02 0.0064 21.9 8.6 47 6-55 9-56 (351)
410 1rrm_A Lactaldehyde reductase; 28.4 50 0.0017 26.4 3.7 65 25-90 32-109 (386)
411 1e5d_A Rubredoxin\:oxygen oxid 28.4 2.1E+02 0.0072 22.2 11.6 81 24-104 252-343 (402)
412 3m2p_A UDP-N-acetylglucosamine 28.3 1.8E+02 0.0063 21.6 7.7 57 24-81 2-75 (311)
413 4a5o_A Bifunctional protein fo 28.0 2.1E+02 0.0073 22.2 8.8 63 14-77 151-213 (286)
414 2him_A L-asparaginase 1; hydro 28.0 51 0.0018 26.5 3.7 37 67-103 252-290 (358)
415 1va0_A Uroporphyrin-III C-meth 27.8 71 0.0024 23.5 4.3 47 10-56 60-111 (239)
416 1mv8_A GMD, GDP-mannose 6-dehy 27.7 60 0.002 26.4 4.1 44 12-56 302-354 (436)
417 3oa2_A WBPB; oxidoreductase, s 27.6 2.1E+02 0.0071 21.9 9.1 30 24-53 3-32 (318)
418 3ic5_A Putative saccharopine d 27.3 90 0.0031 19.3 4.3 33 23-56 4-37 (118)
419 3p2o_A Bifunctional protein fo 27.3 2.2E+02 0.0075 22.1 9.0 63 14-77 150-212 (285)
420 3nhv_A BH2092 protein; alpha-b 27.2 1.4E+02 0.0048 20.0 5.5 46 10-55 57-105 (144)
421 2csu_A 457AA long hypothetical 27.2 2.6E+02 0.0088 22.9 8.1 29 23-51 292-320 (457)
422 1a4i_A Methylenetetrahydrofola 27.1 1.6E+02 0.0054 23.2 6.2 68 7-74 16-99 (301)
423 3fro_A GLGA glycogen synthase; 27.0 1E+02 0.0035 23.8 5.3 33 24-56 2-43 (439)
424 2duw_A Putative COA-binding pr 27.0 1.2E+02 0.0043 20.5 5.2 32 25-56 14-48 (145)
425 3r6m_A YEAZ, resuscitation pro 26.9 22 0.00076 26.5 1.2 44 68-112 56-101 (213)
426 2yvk_A Methylthioribose-1-phos 26.8 2.5E+02 0.0086 22.6 7.8 86 14-104 197-293 (374)
427 2r60_A Glycosyl transferase, g 26.7 68 0.0023 25.9 4.3 35 22-56 5-58 (499)
428 3va7_A KLLA0E08119P; carboxyla 26.7 86 0.0029 29.6 5.4 34 22-56 29-62 (1236)
429 3j20_B 30S ribosomal protein S 26.7 1.4E+02 0.0048 22.0 5.6 74 24-104 64-141 (202)
430 3doj_A AT3G25530, dehydrogenas 26.4 66 0.0023 24.7 4.0 48 6-57 6-53 (310)
431 2dzd_A Pyruvate carboxylase; b 26.3 54 0.0018 26.6 3.6 34 22-56 4-37 (461)
432 3ox4_A Alcohol dehydrogenase 2 26.3 1.1E+02 0.0037 24.5 5.3 87 16-104 24-137 (383)
433 4es6_A Uroporphyrinogen-III sy 26.3 53 0.0018 24.3 3.3 66 11-77 116-194 (254)
434 4a26_A Putative C-1-tetrahydro 26.3 1.9E+02 0.0065 22.6 6.6 66 9-74 20-101 (300)
435 4id9_A Short-chain dehydrogena 26.3 2.1E+02 0.0072 21.5 7.0 58 23-81 18-90 (347)
436 3l9w_A Glutathione-regulated p 26.3 53 0.0018 26.8 3.5 33 24-57 4-36 (413)
437 3bre_A Probable two-component 26.2 20 0.00069 27.7 0.9 78 25-104 19-100 (358)
438 3czc_A RMPB; alpha/beta sandwi 26.2 1E+02 0.0035 19.9 4.4 34 40-76 39-75 (110)
439 3db2_A Putative NADPH-dependen 26.1 2.3E+02 0.0077 21.9 8.2 56 21-77 2-75 (354)
440 2f48_A Diphosphate--fructose-6 26.0 15 0.00053 31.5 0.2 14 23-36 71-84 (555)
441 2xhz_A KDSD, YRBH, arabinose 5 25.7 1.6E+02 0.0056 20.1 6.0 90 10-105 37-131 (183)
442 1b0a_A Protein (fold bifunctio 25.5 1.5E+02 0.0051 23.1 5.8 69 6-74 14-97 (288)
443 3ha2_A NADPH-quinone reductase 25.4 1.3E+02 0.0046 21.2 5.3 53 25-78 1-60 (177)
444 1b93_A Protein (methylglyoxal 25.3 1.1E+02 0.0037 21.5 4.6 48 65-112 79-128 (152)
445 2hig_A 6-phospho-1-fructokinas 25.2 15 0.0005 31.2 -0.1 46 67-112 188-246 (487)
446 3st7_A Capsular polysaccharide 25.0 1.2E+02 0.0042 23.3 5.4 55 25-81 1-59 (369)
447 3ecs_A Translation initiation 25.0 2.5E+02 0.0086 22.0 8.2 82 18-105 141-231 (315)
448 3uhf_A Glutamate racemase; str 24.9 2.3E+02 0.008 21.6 8.0 84 23-113 23-127 (274)
449 2yvq_A Carbamoyl-phosphate syn 24.8 1.3E+02 0.0045 20.5 4.9 47 64-112 92-140 (143)
450 4fx5_A VON willebrand factor t 24.7 1.2E+02 0.004 25.1 5.4 52 71-122 183-241 (464)
451 3lzd_A DPH2; diphthamide biosy 24.7 1.9E+02 0.0067 23.4 6.6 70 37-118 283-352 (378)
452 2gel_A Putative GRAM negative 24.6 74 0.0025 23.6 3.8 43 68-110 55-99 (231)
453 1oj7_A Hypothetical oxidoreduc 24.4 98 0.0033 24.9 4.8 58 25-85 51-122 (408)
454 1lss_A TRK system potassium up 24.3 1.2E+02 0.004 19.4 4.5 31 25-56 5-35 (140)
455 3l07_A Bifunctional protein fo 24.3 2.5E+02 0.0085 21.8 9.0 62 15-77 152-213 (285)
456 1jq5_A Glycerol dehydrogenase; 24.3 97 0.0033 24.5 4.7 75 25-104 32-117 (370)
457 3oti_A CALG3; calicheamicin, T 24.3 2.5E+02 0.0084 21.7 7.2 51 23-76 19-74 (398)
458 3lkb_A Probable branched-chain 24.2 2.2E+02 0.0077 21.7 6.8 77 24-103 143-230 (392)
459 3o9z_A Lipopolysaccaride biosy 24.1 2.4E+02 0.0082 21.5 9.5 30 24-53 3-32 (312)
460 3sc6_A DTDP-4-dehydrorhamnose 24.0 58 0.002 24.0 3.2 57 23-80 4-68 (287)
461 3lft_A Uncharacterized protein 24.0 1.9E+02 0.0066 21.3 6.2 70 25-103 3-89 (295)
462 3hix_A ALR3790 protein; rhodan 23.9 75 0.0026 20.0 3.3 42 9-50 36-78 (106)
463 1y81_A Conserved hypothetical 23.9 1.7E+02 0.0058 19.6 6.9 34 23-56 13-49 (138)
464 3etn_A Putative phosphosugar i 23.9 2E+02 0.0069 20.7 6.1 102 8-113 41-152 (220)
465 3r5x_A D-alanine--D-alanine li 23.8 1.1E+02 0.0036 23.0 4.7 51 24-75 3-62 (307)
466 1e4e_A Vancomycin/teicoplanin 23.8 51 0.0018 25.6 2.9 34 23-56 2-43 (343)
467 3ec7_A Putative dehydrogenase; 23.7 2.3E+02 0.0077 22.0 6.8 33 19-52 18-52 (357)
468 2ayx_A Sensor kinase protein R 23.7 36 0.0012 25.2 1.9 32 23-54 10-41 (254)
469 3d8t_A Uroporphyrinogen-III sy 23.5 1.9E+02 0.0067 21.6 6.2 63 11-77 145-217 (286)
470 4eys_A MCCC family protein; MC 23.5 1.3E+02 0.0043 23.9 5.2 69 25-107 246-318 (346)
471 3ffs_A Inosine-5-monophosphate 23.3 2.8E+02 0.0097 22.5 7.3 94 25-120 157-273 (400)
472 4ew6_A D-galactose-1-dehydroge 23.2 2E+02 0.0069 22.1 6.3 55 22-77 23-90 (330)
473 1ve2_A Uroporphyrin-III C-meth 23.2 87 0.003 22.9 4.0 47 10-56 63-114 (235)
474 3k7p_A Ribose 5-phosphate isom 23.1 83 0.0028 22.9 3.6 41 12-54 12-56 (179)
475 2d6f_A Glutamyl-tRNA(Gln) amid 23.1 1.6E+02 0.0053 24.4 5.8 35 68-104 325-361 (435)
476 1zgh_A Methionyl-tRNA formyltr 23.0 90 0.0031 23.9 4.1 53 24-76 30-85 (260)
477 3hbl_A Pyruvate carboxylase; T 22.9 1.1E+02 0.0037 28.6 5.3 34 22-56 2-35 (1150)
478 1ta9_A Glycerol dehydrogenase; 22.9 93 0.0032 25.7 4.4 72 26-104 93-176 (450)
479 3q2o_A Phosphoribosylaminoimid 22.6 1.3E+02 0.0044 23.7 5.1 34 23-57 13-46 (389)
480 3hut_A Putative branched-chain 22.6 2.5E+02 0.0084 21.1 8.1 86 14-103 130-226 (358)
481 2qbu_A Precorrin-2 methyltrans 22.3 1.1E+02 0.0037 22.2 4.3 46 11-56 80-130 (232)
482 3hh1_A Tetrapyrrole methylase 22.3 90 0.0031 20.3 3.5 7 68-74 108-114 (117)
483 3pid_A UDP-glucose 6-dehydroge 22.3 68 0.0023 26.5 3.5 44 13-57 322-374 (432)
484 2a0u_A Initiation factor 2B; S 22.3 3.1E+02 0.011 22.1 7.6 86 14-104 201-297 (383)
485 4a5o_A Bifunctional protein fo 22.2 2.8E+02 0.0095 21.5 7.3 67 8-74 18-99 (286)
486 3ged_A Short-chain dehydrogena 22.2 2.4E+02 0.0083 21.0 6.4 12 68-79 75-86 (247)
487 1vl0_A DTDP-4-dehydrorhamnose 22.2 1.7E+02 0.0059 21.4 5.6 61 19-80 7-75 (292)
488 3lvj_C Sulfurtransferase TUSA; 22.1 1.4E+02 0.0049 18.1 7.2 48 8-55 21-68 (82)
489 3vtf_A UDP-glucose 6-dehydroge 22.1 2.1E+02 0.0072 23.6 6.4 36 22-57 331-375 (444)
490 1b73_A Glutamate racemase; iso 22.1 2.2E+02 0.0074 21.1 6.1 34 67-105 61-94 (254)
491 4gnr_A ABC transporter substra 22.1 2.5E+02 0.0087 21.0 8.4 82 19-103 138-228 (353)
492 1uc8_A LYSX, lysine biosynthes 22.0 1E+02 0.0035 22.5 4.2 32 26-57 1-33 (280)
493 2raf_A Putative dinucleotide-b 21.8 2.2E+02 0.0075 20.2 6.1 46 24-75 19-64 (209)
494 1t9k_A Probable methylthioribo 21.8 3E+02 0.01 21.8 7.9 86 14-104 172-268 (347)
495 3kcq_A Phosphoribosylglycinami 21.4 2.5E+02 0.0085 20.7 7.0 71 4-76 15-90 (215)
496 4e4t_A Phosphoribosylaminoimid 21.4 1.5E+02 0.0051 23.9 5.3 34 23-57 34-67 (419)
497 3gg2_A Sugar dehydrogenase, UD 21.4 2.2E+02 0.0076 23.2 6.4 35 23-57 317-360 (450)
498 3qvo_A NMRA family protein; st 21.4 64 0.0022 23.3 2.9 33 21-54 20-54 (236)
499 4a26_A Putative C-1-tetrahydro 21.3 3E+02 0.01 21.5 8.2 63 14-77 155-219 (300)
500 1hdo_A Biliverdin IX beta redu 21.2 1.3E+02 0.0046 20.5 4.5 55 25-80 4-79 (206)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.97 E-value=1.7e-29 Score=192.31 Aligned_cols=132 Identities=42% Similarity=0.759 Sum_probs=111.3
Q ss_pred EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hhHHHHHHHhCCCCCEEEE
Q 031223 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~~~~~i~~~~~~~PvLGI 103 (163)
|+||||+++|+.++.++|++.|++++++++++.+++++...++|||||+||++++.+. ....++++++++++|+|||
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI 83 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV 83 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence 9999999999999999999999999999976445556654479999999999988764 2345777777788999999
Q ss_pred ehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcC--ccccCCCCceEEeeeeecee
Q 031223 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED--GLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~--~lf~~lp~~~~v~~~H~~~v 161 (163)
|+|||+|+.++||++.+.. ..++|..+++.++. ++ ++|+++|+.+.++++|+++|
T Consensus 84 C~G~QlL~~~~gg~v~~~~-~~~~g~~~~v~~~~--~~~~~l~~~~~~~~~v~~~H~~~v 140 (195)
T 1qdl_B 84 CLGHQAIGYAFGAKIRRAR-KVFHGKISNIILVN--NSPLSLYYGIAKEFKATRYHSLVV 140 (195)
T ss_dssp THHHHHHHHHTTCEEEEEE-EEEEEEEEEEEECC--SSCCSTTTTCCSEEEEEEEEEEEE
T ss_pred ehHHHHHHHHhCCEEeccC-CCcCCCceEEEECC--CCHhHHHhcCCCceEEeccccchh
Confidence 9999999999999999886 35677555677654 45 89999999999999999998
No 2
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.96 E-value=5.4e-29 Score=189.03 Aligned_cols=133 Identities=30% Similarity=0.600 Sum_probs=104.6
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc----cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~----~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
+||+||||++||++++.++|+++|+++++++++ .+.+++.. .+.+++||+|||+++.+.+...++++.+++++|+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi 79 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI 79 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence 479999999999999999999999999999976 33344421 1456799999999988766556666666788999
Q ss_pred EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
||||+|||+|+.++||++.+.. .+++|+...+... ++++|+++|+.+.+++||+|+|.
T Consensus 80 lGIC~G~Qll~~~~Gg~v~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~ 137 (192)
T 1i1q_B 80 IGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEHD---GQAMFAGLANPLPVARYHSLVGS 137 (192)
T ss_dssp EEETHHHHHHHHHTSCCCCC----CCSSEEEEEEEC---CCGGGTTSCSSEEEEECCC---C
T ss_pred EEECcChHHHHHHhCCEEEeCC-CcEecceeEEecC---CChHHhcCCCCcEEEechhhHhh
Confidence 9999999999999999998775 4577876544432 57899999999999999999873
No 3
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.96 E-value=9e-28 Score=181.62 Aligned_cols=131 Identities=24% Similarity=0.445 Sum_probs=108.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
|||+|||++++|+.++.++|++.|+++++++++. +.+++...++|||||+||+ ++.+.....++++++ ++++|+|||
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence 4699999999999999999999999999999763 5566654479999999998 776655567788875 788999999
Q ss_pred ehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 104 C~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
|+|||+|+.++||++.+.+ ..++|+.+. .... ++++|+++|+.+.++++|.+.+
T Consensus 79 C~G~Q~l~~~~gg~v~~~~-~~~~G~~~~-~~~~--~~~l~~~~~~~~~~~~~h~~~v 132 (189)
T 1wl8_A 79 CLGHQLIAKFFGGKVGRGE-KAEYSLVEI-EIID--EXEIFKGLPKRLKVWESHMDEV 132 (189)
T ss_dssp THHHHHHHHHHTCEEEECS-CCSCEEEEE-EESC--C--CCTTSCSEEEEEECCSEEE
T ss_pred cHHHHHHHHHhCCceecCC-CcccCceeE-EEec--CchHHhCCCCceEEEEEeeeeh
Confidence 9999999999999999976 457899743 4433 5789999999999999999876
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.95 E-value=2e-27 Score=183.38 Aligned_cols=129 Identities=23% Similarity=0.362 Sum_probs=107.7
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC-CCCCCCCh---hHHHHHHHhCCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDSG---ISLQTVLELGPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG-~~~~~d~~---~~~~~i~~~~~~~Pv 100 (163)
+||++||++++|+.++.++|+++|+++++++++. +.+++. ++|||||+|| |+++++.. .+.+.+. ++++|+
T Consensus 14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~--~~~~Pi 88 (212)
T 2a9v_A 14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYID--DHNYPI 88 (212)
T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHH--HCCSCE
T ss_pred ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHH--hCCCCE
Confidence 6899999999999999999999999999998763 455554 5999999999 88887652 2333332 577999
Q ss_pred EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
||||+|||+|+.++||++.+.+ .+++|+. .+.+++ +++||+++++++.++++|++.|.
T Consensus 89 LGIC~G~Qll~~~lGg~v~~~~-~~~~G~~-~v~~~~--~~~l~~~~~~~~~v~~~H~~~v~ 146 (212)
T 2a9v_A 89 LGICVGAQFIALHFGASVVKAK-HPEFGKT-KVSVMH--SENIFGGLPSEITVWENHNDEII 146 (212)
T ss_dssp EEETHHHHHHHHHTTCEEEEEE-EEEEEEE-EEEESC--CCGGGTTCCSEEEEEEEEEEEEE
T ss_pred EEEChHHHHHHHHhCCEEEcCC-CcccCce-eeEECC--CChhHhcCCCceEEEeEhhhhHh
Confidence 9999999999999999999987 4678996 566654 67899999989999999999883
No 5
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=185.49 Aligned_cols=134 Identities=18% Similarity=0.277 Sum_probs=103.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvL 101 (163)
+..+|+|||++++|..++.++|+++|+++++++++ .+.+++...++|||||+||++++++.... .+.++ +++++|+|
T Consensus 23 ~~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~-~~~~~~~~~~~Pil 100 (218)
T 2vpi_A 23 MEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIGKPVL 100 (218)
T ss_dssp CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CC-CCCGGGGTSSCCEE
T ss_pred cCCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccch-hHHHHHHHcCCCEE
Confidence 34689999999999999999999999999999876 34566654579999999999877543210 01122 36789999
Q ss_pred EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
|||+|||+|+.++||+|.+.+ ..++|+. .+.++. +++||+++++++.++++|+++|.
T Consensus 101 GIC~G~Qll~~~~GG~v~~~~-~~~~G~~-~v~~~~--~~~l~~~l~~~~~v~~~H~~~v~ 157 (218)
T 2vpi_A 101 GICYGMQMMNKVFGGTVHKKS-VREDGVF-NISVDN--TCSLFRGLQKEEVVLLTHGDSVD 157 (218)
T ss_dssp EETHHHHHHHHHTTCCEEEEE-ECSCEEE-EEEECT--TSGGGTTCCSEEEEEECSEEEES
T ss_pred EEcHHHHHHHHHhCCceEeCC-CCcccEE-EEEEcc--CChhHhcCCCCcEEeehhhhHhh
Confidence 999999999999999999986 4678986 677764 68999999999999999999983
No 6
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.95 E-value=1.1e-27 Score=206.47 Aligned_cols=133 Identities=20% Similarity=0.359 Sum_probs=102.1
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG 102 (163)
+.+|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||+++++.+.. ...++ ++.++|+||
T Consensus 10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvLG 87 (527)
T 3tqi_A 10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVLG 87 (527)
T ss_dssp CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEE
T ss_pred CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEEE
Confidence 4689999999999999999999999999999876 44556655578999999999998765321 12223 467899999
Q ss_pred EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCC--------ceEEeeeeeceec
Q 031223 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK--------YVSISCYNIQCFA 162 (163)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~--------~~~v~~~H~~~v~ 162 (163)
||+|||+|+.++||+|.+.. .+++|+. .+.+.. +++||+++++ .+.++++|+|.|+
T Consensus 88 IC~G~Qlla~~lGG~V~~~~-~~e~G~~-~v~~~~--~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~ 151 (527)
T 3tqi_A 88 ICYGMQTMAYQLGGKVNRTA-KAEFGHA-QLRVLN--PAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS 151 (527)
T ss_dssp ETHHHHHHHHHSSSCBC------CEEEE-EEEESS--CTTTTSSCCSBCCTTSCCEEEEEEESSSCBC
T ss_pred EChHHHHHHHHcCCeEEeCC-Cccccce-EEEEcC--CChhhcCCccccccccccceEEEEEcccchh
Confidence 99999999999999999987 5689997 566654 5789999987 6899999999884
No 7
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.94 E-value=1.6e-26 Score=199.28 Aligned_cols=134 Identities=23% Similarity=0.421 Sum_probs=111.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvL 101 (163)
..++|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||+++++.... ...++ ++.++|+|
T Consensus 6 ~~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g~PvL 83 (525)
T 1gpm_A 6 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVF 83 (525)
T ss_dssp TSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEE
T ss_pred CCCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCCCCEE
Confidence 34689999999999999999999999999999976 45677765578999999999988765321 01122 36789999
Q ss_pred EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCC--------ceEEeeeeeceec
Q 031223 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK--------YVSISCYNIQCFA 162 (163)
Q Consensus 102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~--------~~~v~~~H~~~v~ 162 (163)
|||+|||+|+.++||+|.+.. .+++|+. .+.+.. +++||+++|+ .+.|+++|+|.|+
T Consensus 84 GIC~G~Qlla~~~GG~V~~~~-~~e~G~~-~v~~~~--~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~ 148 (525)
T 1gpm_A 84 GVCYGMQTMAMQLGGHVEASN-EREFGYA-QVEVVN--DSALVRGIEDALTADGKPLLDVWMSHGDKVT 148 (525)
T ss_dssp EETHHHHHHHHHHTCEEECCS-SCEEEEE-EEEECS--CCTTTTTCCSEECTTSCEEEEEEEEECSEEE
T ss_pred EEChHHHHHHHHcCCEEEeCC-CcccceE-EEEeCC--CCHhhccCccccccccccceEEEEEccceee
Confidence 999999999999999999987 5789996 566654 5789999998 7999999999983
No 8
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.94 E-value=3.8e-26 Score=198.03 Aligned_cols=135 Identities=18% Similarity=0.296 Sum_probs=110.4
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh--H-HHHHHHh-CCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--S-LQTVLEL-GPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~--~-~~~i~~~-~~~~Pv 100 (163)
.+|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||+++++.+. + ..+++.+ ++++|+
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~Pv 86 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPI 86 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCE
Confidence 579999999999999999999999999999976 5567776568999999999999876532 2 2333332 568999
Q ss_pred EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCC-----------------------------cCccccCC-CCc
Q 031223 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG-----------------------------EDGLLAGL-SKY 150 (163)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~-----------------------------~~~lf~~l-p~~ 150 (163)
||||+|||+|+.++||+|.+.. ..|+|+. .+.+.... .++||+++ |+.
T Consensus 87 LGIC~G~QlLa~~lGG~V~~~~-~~E~G~~-~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~ 164 (556)
T 3uow_A 87 FGICYGMQEIAVQMNGEVKKSK-TSEYGCT-DVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDI 164 (556)
T ss_dssp EEETHHHHHHHHHTTCEEEEEE-EEEEEEE-EEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSE
T ss_pred EEECHHHHHHHHHhCCcEecCC-CcccCCc-ceeeccCcccccccceecccccccccccccccccccccchhhcccccCc
Confidence 9999999999999999999987 5788986 45554321 23899999 899
Q ss_pred eEEeeeeeceec
Q 031223 151 VSISCYNIQCFA 162 (163)
Q Consensus 151 ~~v~~~H~~~v~ 162 (163)
+.++++|+|.|.
T Consensus 165 ~~v~~~H~d~V~ 176 (556)
T 3uow_A 165 TTVWMNHNDEVT 176 (556)
T ss_dssp EEEEEEEEEEEE
T ss_pred eEEEEEccceee
Confidence 999999999873
No 9
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.94 E-value=1.6e-26 Score=182.53 Aligned_cols=135 Identities=21% Similarity=0.348 Sum_probs=107.7
Q ss_pred CCCeEEEEECCC-ChHHHHHHHHHHcCCEEEEEeCCCCC--HHHHhccCCCEEEeCCCCCCCCCC-h---hHHHHHHH-h
Q 031223 23 NKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDS-G---ISLQTVLE-L 94 (163)
Q Consensus 23 ~~~~Ilvid~~~-~~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~~~~~dgvvl~GG~~~~~d~-~---~~~~~i~~-~ 94 (163)
++++|+||++.. +...++.++|++.|+++++++++... ++++ .++|+|||+|||+++++. + ...++|++ +
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~ 79 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAV 79 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHH
Confidence 356899998865 46889999999999999999864221 1122 379999999999987754 2 24566776 4
Q ss_pred CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCC-CcCccccCCCCceEEeeeeeceec
Q 031223 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~-~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+.++|+||||+|+|+|+.++||+|.+.+ .+++||. ++.++.. ..++|| ++|+.+.|++||+|+|+
T Consensus 80 ~~~~PvlGIC~G~Qll~~~lGG~V~~~~-~~e~G~~-~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v~ 145 (250)
T 3m3p_A 80 AQRVPVIGHCLGGQLLAKAMGGEVTDSP-HAEIGWV-RAWPQHVPQALEWL-GTWDELELFEWHYQTFS 145 (250)
T ss_dssp HHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEE-EEEECSSHHHHHHH-SCSSCEEEEEEEEEEEC
T ss_pred HcCCCEEEECHHHHHHHHHhCCEEEeCC-CCceeeE-EEEEecCCCCcccc-cCCCccEEEEEccceee
Confidence 6789999999999999999999999997 5789997 6776542 236899 89999999999999885
No 10
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.94 E-value=1.3e-26 Score=198.85 Aligned_cols=130 Identities=23% Similarity=0.421 Sum_probs=106.4
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEe
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 104 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC 104 (163)
||+|||++++|++++.++++++|+.+++++++ .+.+++...++|||||+|||+++++.... ...++ ++.++|+||||
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~PvLGIC 78 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGLPLLGIC 78 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSCCEEEET
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCCCEEEEC
Confidence 49999999999999999999999999999986 46777765578999999999988764321 01122 36789999999
Q ss_pred hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|||+|+.++||+|.+.. .+++|+. .+.+.. ++||+++|+.+.|+++|+|.|+
T Consensus 79 ~G~Qlla~~~GG~v~~~~-~~e~G~~-~v~~~~---~~l~~~~~~~~~v~~~H~~~v~ 131 (503)
T 2ywb_A 79 YGMQLLAQELGGRVERAG-RAEYGKA-LLTRHE---GPLFRGLEGEVQVWMSHQDAVT 131 (503)
T ss_dssp HHHHHHHHTTTCEEECC----CEEEE-ECSEEC---SGGGTTCCSCCEEEEECSCEEE
T ss_pred HHHHHHHHHhCCeEeeCC-CCccceE-EEEecC---cHHhhcCCCccEEEEECCCccc
Confidence 999999999999999987 5789986 455442 7899999999999999999983
No 11
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.93 E-value=1.8e-25 Score=174.75 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=106.1
Q ss_pred CeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCCCCCCCCCC---------hhHHHHHHH
Q 031223 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDS---------GISLQTVLE 93 (163)
Q Consensus 25 ~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~GG~~~~~d~---------~~~~~~i~~ 93 (163)
|||++|++... ....+.+++++.|+++++++.+... +.+ ...++|+|||+|||+++.+. ....++|++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~ 79 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQK 79 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHH
Confidence 58999988544 3668999999999999999864211 111 12379999999999986431 115677777
Q ss_pred -hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceec
Q 031223 94 -LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 94 -~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+++++|+||||+|||+|+.++||+|.+.+ .+++|+. ++.++. +..+++|+++|+.+.+++||++..+
T Consensus 80 ~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~-~~~~G~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~~ 148 (236)
T 3l7n_A 80 AAKSEKIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNY-LISLTEAGKMDSYLSDFSDDLLVGHWHGDMPG 148 (236)
T ss_dssp HHHTTCEEEEETHHHHHHHHHTTCCCEEEE-EEEEEEE-EEEECTTGGGCGGGTTSCSEEEEEEEEEEECC
T ss_pred HHHcCCCEEEEchHHHHHHHHhCCEEecCC-CceeeeE-EEEEccCcccChHHhcCCCCcEEEEecCCccc
Confidence 47889999999999999999999999987 5789996 677764 2258999999999999999998753
No 12
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.92 E-value=6.8e-25 Score=171.98 Aligned_cols=139 Identities=14% Similarity=0.235 Sum_probs=107.5
Q ss_pred hcCCCCCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCC--HHHHhccCCCEEEeCCCCCCCCCCh------hHHH
Q 031223 19 KSKNNKNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG------ISLQ 89 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~ 89 (163)
+---.+.||+||++... +...+.+++++.|+++.+++++... .+.+ .++|||||+|||.++++.. ...+
T Consensus 7 ~~~~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~ 84 (239)
T 1o1y_A 7 HHHHHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQ 84 (239)
T ss_dssp ---CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHH
T ss_pred ccccceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHH
Confidence 33445689999988644 5778999999999999888764211 1122 3799999999998876542 2466
Q ss_pred HHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 90 TVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 90 ~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+++++ ++++|+||||+|||+|+.++||+|.+...++++|+. ++.... +++||+++|+.+.+++||++.++
T Consensus 85 ~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~-~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~ 155 (239)
T 1o1y_A 85 LIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWY-FVEKVS--DNKFFREFPDRLRVFQWHGDTFD 155 (239)
T ss_dssp HHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEE-EEEECC--CCGGGTTSCSEEEEEEEESEEEC
T ss_pred HHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccE-EEEECC--CCchHHhCCCCceeEeecCCccc
Confidence 77774 678999999999999999999999998744788985 666543 68999999999999999999874
No 13
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.92 E-value=1e-25 Score=199.42 Aligned_cols=134 Identities=18% Similarity=0.295 Sum_probs=99.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh--hHHHHHHHhCCCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVP 99 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~--~~~~~i~~~~~~~P 99 (163)
+.+.+|+|||++++|++.+.++|+++|+++++++++ .+.+++...++|||||+|||+++++.+ .+.+.+ ++.++|
T Consensus 27 ~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~~g~P 103 (697)
T 2vxo_A 27 HYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKP 103 (697)
T ss_dssp --CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TTSSCC
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--HhCCCC
Confidence 345689999999999999999999999999999986 456777556899999999999887532 222111 367899
Q ss_pred EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+||||+|||+|+.++||+|.+.. ..++|+. .+.+.. +++||+++|+.+.|+++|+|.|+
T Consensus 104 vLGIC~G~QlLa~~lGG~v~~~~-~~e~G~~-~v~~~~--~~~Lf~~l~~~~~v~~~H~~~V~ 162 (697)
T 2vxo_A 104 VLGICYGMQMMNKVFGGTVHKKS-VREDGVF-NISVDN--TCSLFRGLQKEEVVLLTHGDSVD 162 (697)
T ss_dssp EEEEEHHHHHHHHHTTCCBCC--------CE-EEEECT--TSGGGTTCCSEEEECCCSSCCBS
T ss_pred EEEECHHHHHHHHHhCCeEeecC-CCccceE-EEEecC--CChhhhcCCccCcceeeccccee
Confidence 99999999999999999999987 4689985 777754 57999999999999999999984
No 14
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.92 E-value=7.6e-25 Score=192.42 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=110.8
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh-----HHHHHHH-h
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-L 94 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~-----~~~~i~~-~ 94 (163)
...+++|+|||++++|++++.++|++.|+++++++++.. .+ ..++|+|||+|||+++.+... ..++|++ +
T Consensus 443 ~~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~--~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 443 ELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VD--LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp CSTTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CC--GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--cc--ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 345689999999999999999999999999999998632 12 237999999999999987652 3566666 4
Q ss_pred CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+.++|+||||+|||+|+.++||+|.+.. .+++|+.+.+.+. ++++|.+++.++.++++|.+.+
T Consensus 519 ~~~iPiLGIClG~QlLa~alGG~V~~~~-~~~~G~~~~i~~~---~~~l~~~~~~~~~v~~~h~~~~ 581 (645)
T 3r75_A 519 DEGKPFMAVCLSHQILNAILGIPLVRRE-VPNQGIQVEIDLF---GQRERVGFYNTYVAQTVRDEMD 581 (645)
T ss_dssp HHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEET---TEEEEEEEEEEEEEBCSCSEEE
T ss_pred HCCCCEEEECHHHHHHHHHhCCEEEcCC-CcccccceEEeee---cCcceecCCCcEEEEEehhhcc
Confidence 6789999999999999999999999987 4678998777765 4678888888899988887654
No 15
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.89 E-value=8.2e-23 Score=169.61 Aligned_cols=126 Identities=21% Similarity=0.377 Sum_probs=99.8
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG 102 (163)
..+|++||++ ...++.++|+++|+++++++++ .+.+++...++|||||+|||+++.+.....++++++ ++++|+||
T Consensus 190 ~~~V~viD~G--~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG 266 (379)
T 1a9x_B 190 PFHVVAYDFG--AKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG 266 (379)
T ss_dssp CEEEEEEESS--CCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred CCEEEEEECC--ChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence 3689999994 4578999999999999999986 456677656899999999999998766677888885 67899999
Q ss_pred EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
||+|||+|+.++||++.+++. .++|+.+++.... .. .-+.+.++|+++|+
T Consensus 267 IClG~QLLa~A~GG~v~k~~~-gh~g~n~pv~~~~--~g-------~v~its~~H~~aV~ 316 (379)
T 1a9x_B 267 ICLGHQLLALASGAKTVKMKF-GHHGGNHPVKDVE--KN-------VVMITAQNHGFAVD 316 (379)
T ss_dssp ETHHHHHHHHHTTCCEEEEEE-EEEEEEEEEEETT--TT-------EEEEEEEEEEEEEC
T ss_pred ECchHHHHHHHhCcEEEeccc-ccccCceeeEecC--CC-------cEEEEecCccceEe
Confidence 999999999999999999874 3567777765321 11 12345678888774
No 16
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.89 E-value=9.8e-24 Score=161.70 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=90.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhH---HHHHHH-hCCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS---LQTVLE-LGPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~---~~~i~~-~~~~~ 98 (163)
|+.+|+|||++.++.+++.++|+++|+++++++ +.+++. ++|+|||+|| +++.+.... ..+++. .+.++
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~----~~~~l~--~~D~lilPG~-g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISR----DPQVVL--AADKLFLPGV-GTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHTTCCEEEEC----CHHHHH--HCSEEEECCC-SCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred CCCEEEEEECCCChHHHHHHHHHHCCCEEEEEC----CHHHHh--CCCEEEECCC-CCHHHHHHHHHhcChHHHHHHcCC
Confidence 345799999999999999999999999999875 256665 6899999654 554433211 112333 25789
Q ss_pred CEEEEehHHHHHHHHhCCeeeeCCCc---------------------ccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223 99 PLFGVCMGLQCIGEAFGGKIVRSPLG---------------------VMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~Gg~v~~~~~~---------------------~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H 157 (163)
|+||||+|||+|+.++|+.+.+.... ++.++. .+... ..+++|+++++.+.++++|
T Consensus 74 PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~-~~~~~--~~~~l~~~l~~~~~~~~~H 150 (211)
T 4gud_A 74 PLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWN-TVQVK--EGHPLFNGIEPDAYFYFVH 150 (211)
T ss_dssp CEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEE-CCEEC--TTCGGGTTCCTTCCEEEEE
T ss_pred CEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccce-eeeee--ccChhhcCCCCCcEEEEEe
Confidence 99999999999999999887765311 111222 11222 2678999999999999999
Q ss_pred eceec
Q 031223 158 IQCFA 162 (163)
Q Consensus 158 ~~~v~ 162 (163)
++.++
T Consensus 151 ~~~v~ 155 (211)
T 4gud_A 151 SFAMP 155 (211)
T ss_dssp SEECC
T ss_pred eEEeC
Confidence 99874
No 17
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.87 E-value=1e-21 Score=155.14 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCC-CC--CCC--------------hhHHHHHHHh-CCC
Q 031223 38 YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG-AP--QDS--------------GISLQTVLEL-GPT 97 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~-~~--~d~--------------~~~~~~i~~~-~~~ 97 (163)
..+.++++++|..+.++++.. +.+ +. ..++|||||+||++ +| +.. ....++++++ +++
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~-~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~ 108 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDD-PST-AVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG 108 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCC-GGG-HHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEEeCCC-chH-HHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence 458889999999999998752 222 22 13799999999986 22 111 0145667774 788
Q ss_pred CCEEEEehHHHHHHHHhCCeeeeCC-------------CcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223 98 VPLFGVCMGLQCIGEAFGGKIVRSP-------------LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a~Gg~v~~~~-------------~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
+|+||||+|||+|+.++||++.+.. ..++.|+. .+++++ +++||+.+++.+.|+++|++.|+
T Consensus 109 ~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~-~v~~~~--~s~l~~~~~~~~~v~~~H~~~v~ 183 (254)
T 3fij_A 109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSH-TIDIEP--TSELAKHHPNKKLVNSLHHQFIK 183 (254)
T ss_dssp CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCE-EEEECT--TSSGGGTCCTTEEECCBCSCEES
T ss_pred CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceE-EEEeCC--CChHHHhcCCcEEEEEeccchhh
Confidence 9999999999999999999998751 12345774 677764 67899999989999999999874
No 18
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.84 E-value=2.2e-21 Score=147.76 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGP 96 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~ 96 (163)
+++|+|||++.++..++.++|++.|+++++++++ +++. ++|+|||+|| +++.+. ....+++++ +++
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G~-g~~~~~~~~l~~~~~~~~i~~~~~~ 74 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLER 74 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECCC-CcHHHHHHHHHhcCHHHHHHHHHHc
Confidence 4689999987677788999999999999988743 2333 7999999663 443211 224677777 468
Q ss_pred CCCEEEEehHHHHHHHH---hC---------CeeeeCC--CcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 97 TVPLFGVCMGLQCIGEA---FG---------GKIVRSP--LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a---~G---------g~v~~~~--~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
++|+||||+|||+|+.+ +| |++.+.+ ..++.||. .+..++ + |.++++ +.++++|++.+
T Consensus 75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~-~v~~~~----~-l~~~~~-~~~~~~Hs~~~ 146 (200)
T 1ka9_H 75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWN-ALEFGG----A-FAPLTG-RHFYFANSYYG 146 (200)
T ss_dssp TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEE-ECEECG----G-GGGGTT-CEEEEEESEEC
T ss_pred CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEE-EEEech----h-hhcCCC-CCEEEeccccc
Confidence 89999999999999999 68 7887764 23567886 566552 4 778887 89999999976
No 19
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=4.2e-21 Score=144.43 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=85.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHHhCCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLELGPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~~~~~~Pv 100 (163)
|+|+|||+.+++... .++|++.|+++.+++++ +++. ++|||||+||++++.+.. .+.+.++ ++++|+
T Consensus 1 m~i~vl~~~g~~~~~-~~~l~~~G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi 71 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEH-EEAIKKAGYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI 71 (186)
T ss_dssp CEEEEECSSSCCHHH-HHHHHHTTSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred CEEEEEecCcchHHH-HHHHHHCCCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence 589999998777654 59999999999888642 3443 799999999987654321 1234444 678999
Q ss_pred EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-C------CcCccccCCCCceEEeeeeeceec
Q 031223 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-K------GEDGLLAGLSKYVSISCYNIQCFA 162 (163)
Q Consensus 101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~------~~~~lf~~lp~~~~v~~~H~~~v~ 162 (163)
||||+|||+|+.++||++... +...+. +.... + ..+.+|.++ +++.++++|+++|+
T Consensus 72 lGIC~G~Qll~~~~gg~~~~l--g~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~ 134 (186)
T 2ywj_A 72 LGTCAGMVLLSKGTGINQILL--ELMDIT---VKRNAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVD 134 (186)
T ss_dssp EEETHHHHHHSSCCSSCCCCC--CCSSEE---EETTTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEE
T ss_pred EEECHHHHHHHHHhCCCcCcc--CCCcee---EEeccCCCcccceecccccccC-CcEEEEEEecceee
Confidence 999999999999999985322 111111 11110 0 023567777 78999999999873
No 20
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.82 E-value=2.6e-20 Score=142.38 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=96.8
Q ss_pred CCeEEEEECCCChH-HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC--------ChhHHHHHHHh
Q 031223 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL 94 (163)
Q Consensus 24 ~~~Ilvid~~~~~~-~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d--------~~~~~~~i~~~ 94 (163)
.++|+||++.+.+. ..+.++|++.|+++.++++++ ++ .++|+|||+||+....+ ...+.++++++
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA 75 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence 46899999987764 788999999999999987541 22 37999999999653332 12356778774
Q ss_pred -CCCCCEEEEehHHHHHHHH--hCCeeeeCCCc-ccccceeEEEeCCCCcCccccCCCC--ceEEeeeee
Q 031223 95 -GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLSK--YVSISCYNI 158 (163)
Q Consensus 95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp~--~~~v~~~H~ 158 (163)
++++|+||||+|+|+|+.+ +||++.+.+.. .+.||. .+++.. .+++||+++++ .+.++++|+
T Consensus 76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~-~v~~~~-~~~~l~~~~~~~~~~~~~~~H~ 143 (213)
T 3d54_D 76 AERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWV-DLIVEN-NDTPFTNAFEKGEKIRIPIAHG 143 (213)
T ss_dssp HHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEE-EEEECC-CSSTTSTTSCTTCEEEEECCBS
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeE-EEEeCC-CCCceeeccCCCCEEEEEeecC
Confidence 6789999999999999999 99999887522 356775 677652 26899999985 577777993
No 21
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.80 E-value=1.7e-19 Score=146.51 Aligned_cols=140 Identities=13% Similarity=0.202 Sum_probs=94.3
Q ss_pred CCCCCeEEEEECCCC-----------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCCh--
Q 031223 21 KNNKNPIIVIDNYDS-----------FTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG-- 85 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~-----------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~-- 85 (163)
++.++.|.|...... ...++.++|+++|+.+++++++. +.+++.. .++|||||+||++++.+..
T Consensus 27 ~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~ 105 (315)
T 1l9x_A 27 TAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYA 105 (315)
T ss_dssp -CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHH
T ss_pred cCCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhh
Confidence 344467888843211 12357899999999999998763 4444432 2799999999998876541
Q ss_pred ----hHHHHHHHh-CC--CCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCce------
Q 031223 86 ----ISLQTVLEL-GP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYV------ 151 (163)
Q Consensus 86 ----~~~~~i~~~-~~--~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~------ 151 (163)
.+.+.+++. ++ ++|+||||+|||+|+.++||++.... ..++|...++.... ..+++||+++|+.+
T Consensus 106 ~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~-~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~ 184 (315)
T 1l9x_A 106 KVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV 184 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEE-EEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccccc-ccccCCCCCeeeccCCCCChHHHhcChhhhhhccc
Confidence 234444443 22 59999999999999999999976554 23456544444432 23688999997542
Q ss_pred --EEeeeeeceec
Q 031223 152 --SISCYNIQCFA 162 (163)
Q Consensus 152 --~v~~~H~~~v~ 162 (163)
.++++|+|+|+
T Consensus 185 ~~~~~~~H~~~V~ 197 (315)
T 1l9x_A 185 EPLTANFHKWSLS 197 (315)
T ss_dssp SCCEEEEEEEECB
T ss_pred cceEEEhhhhhcC
Confidence 24459999984
No 22
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.80 E-value=2.6e-20 Score=149.69 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=69.5
Q ss_pred hhHhhHHhhhcCCCCCeEEEE-EC-CCCh-HHHHHHHHHHcCC----EEEEEeCCCC---------CHHHH-----hccC
Q 031223 10 SKSLYLDDKKSKNNKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDEL---------TVEEL-----KRKN 68 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ilvi-d~-~~~~-~~~~~~~l~~~G~----~~~v~~~~~~---------~~~~~-----~~~~ 68 (163)
-|+.++++.++++..++|+|| |+ +.+. ..++.++|+++|+ .+++...+.. +.+++ ...+
T Consensus 11 ~~~~~~~~~~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (289)
T 2v4u_A 11 VDLGTENLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCK 90 (289)
T ss_dssp ------------CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhh
Confidence 599999999999888999999 77 5555 5688999998765 3444433211 11110 0126
Q ss_pred CCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeee
Q 031223 69 PRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIV 119 (163)
Q Consensus 69 ~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (163)
+|||||+||++++.. ....++++++ ++++|+||||+|||+|+.++||++.
T Consensus 91 ~dgiil~GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~ 141 (289)
T 2v4u_A 91 ADGILVPGGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL 141 (289)
T ss_dssp CSEEEECSCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred CCEEEecCCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence 999999999877433 3356677774 6789999999999999999999985
No 23
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.79 E-value=5.8e-20 Score=139.24 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=86.4
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP 99 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~~~P 99 (163)
+||+|||+.++|...+ ++|++.|+++.++++ .+++. ++|+|||+||+.++.+. ..+.++++++ ++++|
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~----~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP 74 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCC----hHHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence 6899999987787765 899999999888864 23443 79999999998654432 1235677774 68899
Q ss_pred EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeC--C-CC------cCccccCCCCceEEeeeeecee
Q 031223 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD--E-KG------EDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~--~-~~------~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+||||+|+|+|+.++||++.+. .|+. ++.++ . +. .+.++.+++++|.++++|++.|
T Consensus 75 ilgIC~G~q~l~~~~gg~~~~~-----lg~~-~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v 139 (196)
T 2nv0_A 75 MFGTCAGLIILAKEIAGSDNPH-----LGLL-NVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHI 139 (196)
T ss_dssp EEEETHHHHHHSBCCC----CC-----CCCS-CEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEE
T ss_pred EEEECHHHHHHHHHhcCCCCCc-----ccCC-ceeEeccCCCcccccccCCcccccCCCceEEEEEeccee
Confidence 9999999999999999986432 2332 11111 0 00 1345667778899999999876
No 24
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.77 E-value=1.7e-19 Score=137.18 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=84.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcC-----CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-h-----hHHHHHHH
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-G-----ISLQTVLE 93 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G-----~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~-----~~~~~i~~ 93 (163)
|||+|||++.++..++.++|++.| +++++++++ ++ .++|+|||+|| +++.+. . .+.+++++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~----~~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~ 72 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESP----RN---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK 72 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSC----CS---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCC----cc---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence 589999988777789999999999 899988753 12 37999999664 444322 1 13567777
Q ss_pred h-CCCCCEEEEehHHHHHHHHhC--CeeeeCCCcccccceeEEE---eCCCCcCccccCCC-CceEEeeeeeceec
Q 031223 94 L-GPTVPLFGVCMGLQCIGEAFG--GKIVRSPLGVMHGKSSLVY---YDEKGEDGLLAGLS-KYVSISCYNIQCFA 162 (163)
Q Consensus 94 ~-~~~~PvLGIC~G~QlLa~a~G--g~v~~~~~~~e~G~~~~i~---~~~~~~~~lf~~lp-~~~~v~~~H~~~v~ 162 (163)
+ ++++|+||||+|||+|+.++| |+ .+.- +...|...... ......++++...+ +.+.++++|+++|+
T Consensus 73 ~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l-~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~~~v~ 146 (201)
T 1gpw_B 73 HVEDERYVVGVCLGMQLLFEESEEAPG-VKGL-SLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAV 146 (201)
T ss_dssp HHHTTCEEEEETHHHHTTSSEETTEEE-EECC-CSSSEEEEECCCSSCSEEEEEEEEESSSSCCEEEEEEESEEEE
T ss_pred HHHcCCeEEEEChhHHHHHHhhccCCC-CCCc-ceeeeEEEEcCCCCCCcccceeeEeccCCCCCeEEEECcceec
Confidence 4 678999999999999999997 33 2211 11111111000 00000134444444 57899999999984
No 25
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.75 E-value=2.4e-19 Score=138.48 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GP 96 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~ 96 (163)
+.+++|+|+++.+.|.. +.++|++.|+++.++++. +++. ++|+|||+||+.++.+. ..+.++|+++ ++
T Consensus 21 ~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~ 93 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA 93 (219)
T ss_dssp CCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHc
Confidence 44688999998765664 458899999999888742 3443 79999999998654321 1235677774 68
Q ss_pred CCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC---CC------cCccccCCCCceEEeeeeecee
Q 031223 97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE---KG------EDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 97 ~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~---~~------~~~lf~~lp~~~~v~~~H~~~v 161 (163)
++|+||||+|+|+|+.++||++.+. .|+. ++.+.. +. .+..|.+++++|.++++|++.|
T Consensus 94 ~~PilGIC~G~QlL~~~~gg~~~~~-----lg~~-~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v 161 (219)
T 1q7r_A 94 GKPMFGTCAGLILLAKRIVGYDEPH-----LGLM-DITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHI 161 (219)
T ss_dssp TCCEEEETTHHHHHEEEEESSCCCC-----CCCE-EEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEE
T ss_pred CCeEEEECHHHHHHHHHhCCCCcCC-----cCcc-ceEEEecCCCccccceecCcccCCCCCceEEEEEeccee
Confidence 8999999999999999999987432 2321 111110 00 1233466667889999999876
No 26
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.73 E-value=1.8e-18 Score=132.49 Aligned_cols=130 Identities=11% Similarity=0.107 Sum_probs=83.3
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL- 94 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~- 94 (163)
+....++|+|||+ ..+...+.++|++.|+++.++++. +++. ++|+|||+||+.+..+. ..+.++|+++
T Consensus 16 ~~~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~ 88 (208)
T 2iss_D 16 PRGSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERI 88 (208)
T ss_dssp ----CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHH
Confidence 3445578999997 344555778899999999888642 3454 79999999985433221 1135677774
Q ss_pred CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCC---C------cCccccCCC-CceEEeeeeeceec
Q 031223 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK---G------EDGLLAGLS-KYVSISCYNIQCFA 162 (163)
Q Consensus 95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~---~------~~~lf~~lp-~~~~v~~~H~~~v~ 162 (163)
++++|+||||+|+|+|+.++||...+. .|+. +.++... . .+..+.+++ ++|.++++|++.|+
T Consensus 89 ~~g~PilGIC~G~QlL~~~~gg~~~~~-----lg~~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 160 (208)
T 2iss_D 89 NNGLPVFATCAGVILLAKRIKNYSQEK-----LGVL-DITVERNAYGRQVESFETFVEIPAVGKDPFRAIFIRAPRIV 160 (208)
T ss_dssp HTTCCEEEETHHHHHHEEEEC---CCC-----CCCE-EEEEETTTTCSGGGCEEEEECCGGGCSSCEEEEESSCCEEE
T ss_pred HCCCeEEEECHHHHHHHHHcCCCCCCC-----cccc-ceEEEecCCCcccccccCCcccccCCCCceEEEEEeCcccc
Confidence 688999999999999999999954221 2332 1111110 0 123456665 57999999998763
No 27
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.73 E-value=2.1e-18 Score=137.49 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=85.1
Q ss_pred CeEEEE-EC-------CCChHHHHHHHHHHcCCEEEEEeCCCCC--------H-HHHhccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVI-DN-------YDSFTYNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvi-d~-------~~~~~~~~~~~l~~~G~~~~v~~~~~~~--------~-~~~~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.+|+|| |. ++|+..++.++..+.+..+.+++.+... . +.+ .++|||||+||++++... ..
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~dgiil~GG~~~~~~~-~~ 85 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL--LGCDGIFVPGGFGNRGVD-GK 85 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH--HTCSEEEECCCCTTTTHH-HH
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH--hhCCEEEecCCCCCcCch-hH
Confidence 678888 54 2334555666666777778887665321 1 122 279999999998764433 24
Q ss_pred HHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeC---C---Cc-----c----------------cccceeEEEeCCCC
Q 031223 88 LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRS---P---LG-----V----------------MHGKSSLVYYDEKG 139 (163)
Q Consensus 88 ~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~---~---~~-----~----------------e~G~~~~i~~~~~~ 139 (163)
.++++++ ++++|+||||+|||+|+.++||+|... . .+ + +.||. ++.+.. .
T Consensus 86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~-~v~~~~-~ 163 (273)
T 2w7t_A 86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGAC-DVYIVE-K 163 (273)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEE-EEEECC-T
T ss_pred HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccce-EEEEec-C
Confidence 5666664 578999999999999999999998421 0 00 0 23443 555532 1
Q ss_pred cCccccCCCCceEEee--eeecee
Q 031223 140 EDGLLAGLSKYVSISC--YNIQCF 161 (163)
Q Consensus 140 ~~~lf~~lp~~~~v~~--~H~~~v 161 (163)
++++++.+++.+.+++ +|++.|
T Consensus 164 ~s~l~~~~~~~~~v~~~H~Hsy~v 187 (273)
T 2w7t_A 164 SSIMAKIYSKSNIVVERHRHRYEV 187 (273)
T ss_dssp TSHHHHHTTTCSEEEEEEEECCEE
T ss_pred CcHHHHHhCCCceEEeeccccccc
Confidence 4677777776666666 556665
No 28
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.72 E-value=1.2e-18 Score=151.08 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=93.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHHh-CCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPT 97 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~~-~~~ 97 (163)
++|+|||++.++..++.++|+++|+++.+++.. ++....++|+|||+|| +++... ....++++++ +++
T Consensus 5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~----~~~~l~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g 79 (555)
T 1jvn_A 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSP----KDFNISGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESG 79 (555)
T ss_dssp CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSG----GGCCSTTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCc----cccccccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcC
Confidence 579999987778889999999999999988743 2201137999999774 332211 1135667764 678
Q ss_pred CCEEEEehHHHHHHHHh------------CCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223 98 VPLFGVCMGLQCIGEAF------------GGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a~------------Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+|+||||+|||+|+.++ ||+|.+.+. .+++||. .+... ++||+++++.+.++++|++.+
T Consensus 80 ~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~-~v~~~----~~L~~~l~~~~~~~~vHS~~~ 154 (555)
T 1jvn_A 80 KPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWN-SCIPS----ENLFFGLDPYKRYYFVHSFAA 154 (555)
T ss_dssp CCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEE-CCCCC----TTCCTTCCTTSCEEEEESEEC
T ss_pred CcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccce-EEEEc----CHHHhhCCCCceEEEEEEEEE
Confidence 99999999999999998 788887541 2456885 44432 789999988778888888776
No 29
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.72 E-value=8.3e-18 Score=143.67 Aligned_cols=112 Identities=17% Similarity=0.315 Sum_probs=84.3
Q ss_pred cCCChhhHhhHHhhh--cCCCCCeEEEE-------ECCCChHHHHHHHHHHcCCEEEEEeCCCCCH--------HHHhcc
Q 031223 5 EAVPISKSLYLDDKK--SKNNKNPIIVI-------DNYDSFTYNLCQYMGELGYHFEVYRNDELTV--------EELKRK 67 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~--~~~~~~~Ilvi-------d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~--------~~~~~~ 67 (163)
+.+++.|+.++++.+ ++....+|+++ |+|.|+..++.++..+.+..+.+...+...+ +.+ .
T Consensus 272 ~~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L--~ 349 (535)
T 3nva_A 272 QVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEIL--G 349 (535)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTT--T
T ss_pred CCCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhc--c
Confidence 467899999999999 77778899999 4444455566666667788888765442111 122 3
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeee
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIV 119 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~ 119 (163)
++||||++||++++... ...++++++ ++++|+||||+|||+|+.++||+|.
T Consensus 350 ~~DgIIlpGG~G~~~~~-g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~ 401 (535)
T 3nva_A 350 NVNGIIVLPGFGSRGAE-GKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVL 401 (535)
T ss_dssp SCSEEEECCCCSSTTHH-HHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTT
T ss_pred CCCEEEECCCCCCccHH-HHHHHHHHHHHcCCcEEEECcchhHHHHHhhcccc
Confidence 79999999998775433 235666664 6789999999999999999999984
No 30
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.69 E-value=1.1e-16 Score=129.55 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=89.5
Q ss_pred CCeEEEEECCCC---hHHHHHHHHHHcCCEEEE--EeCCC-C--------------CHHHHhccCCCEEEeCCCCCCCCC
Q 031223 24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQD 83 (163)
Q Consensus 24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v--~~~~~-~--------------~~~~~~~~~~dgvvl~GG~~~~~d 83 (163)
.+||+|++.-.. +...+.+.|.....++++ +.... . ++++++..+|||+||+|||.+..+
T Consensus 47 plkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~ 126 (312)
T 2h2w_A 47 PLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLP 126 (312)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSC
T ss_pred CceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCC
Confidence 379999987544 344577777665554444 43321 1 234443457999999999976543
Q ss_pred Ch------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCC-eeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEee
Q 031223 84 SG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISC 155 (163)
Q Consensus 84 ~~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg-~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~ 155 (163)
.+ ++.++++.. ++++|+||||+|+|+++.++|| .....+ +.+.|+. +.++++ .++||+++++.|.+.+
T Consensus 127 ~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~-~~~~~~--~~pL~~g~~~~f~vph 202 (312)
T 2h2w_A 127 FEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELP-QKLSGVY-KHRVAK--DSVLFRGHDDFFWAPH 202 (312)
T ss_dssp GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEE-EEEESS--CCGGGTTCCSEEEEEE
T ss_pred CccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCC-CCEEEEE-EEEEcC--CCccccCCCCceEeeE
Confidence 22 234555543 5789999999999997777766 333333 4578886 556665 6899999999999999
Q ss_pred eeec
Q 031223 156 YNIQ 159 (163)
Q Consensus 156 ~H~~ 159 (163)
+|..
T Consensus 203 sr~~ 206 (312)
T 2h2w_A 203 SRYT 206 (312)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 8553
No 31
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.68 E-value=1.7e-16 Score=128.12 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=87.8
Q ss_pred CeEEEEECCCC---hHHHHHHHHHHcCCEEEE--EeCCC-C--------------CHHHHhccCCCEEEeCCCCCCCCCC
Q 031223 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQDS 84 (163)
Q Consensus 25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v--~~~~~-~--------------~~~~~~~~~~dgvvl~GG~~~~~d~ 84 (163)
+||+|++.-.. +...+.+.|.....++++ +.... . ++++++..+|||+||+|||.+..+.
T Consensus 36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ 115 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF 115 (301)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence 68999987544 344566766655544444 43321 1 2445544689999999999765432
Q ss_pred h------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCC-eeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeee
Q 031223 85 G------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCY 156 (163)
Q Consensus 85 ~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg-~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~ 156 (163)
+ ++.++++.. ++++|+||||+|+|+++.++|| .....+ ..+.|+. +.+++. ..++||+++++.|.+.+|
T Consensus 116 ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~-~~~~~~-~~~pL~~g~~~~f~~phs 192 (301)
T 2vdj_A 116 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFGVF-EHEVRE-QHVKLLQGFDELFFAVHS 192 (301)
T ss_dssp GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEE-EEEECC-SSCGGGTTCCSEEEEEEE
T ss_pred ccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEEEE-EEEecC-CCCccccCCCCceEeeeE
Confidence 2 234555553 5789999999999997776666 333333 3467886 455554 368999999999999998
Q ss_pred ee
Q 031223 157 NI 158 (163)
Q Consensus 157 H~ 158 (163)
|.
T Consensus 193 r~ 194 (301)
T 2vdj_A 193 RH 194 (301)
T ss_dssp EE
T ss_pred ec
Confidence 55
No 32
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.68 E-value=3.4e-17 Score=141.26 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=87.5
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEE-------EEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-----HHHHhccCCCEE
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPII-------VIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGV 72 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Il-------vid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-----~~~~~~~~~dgv 72 (163)
..++..|..++++++++....+|. ++|++.|+..++.+++.+.|+.+.+.+.+... .++.. .++|||
T Consensus 281 ~~~l~~w~~~~~~~~~~~~~v~I~ivgkyv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGI 359 (550)
T 1vco_A 281 IPNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGI 359 (550)
T ss_dssp CCCCHHHHHHHHHHHSCSEEEEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCE
T ss_pred hHHHHHhHHHHHhhcCCCCceEEcccCCeEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEE
Confidence 357889999999988776654444 56888888888888888899999888654211 22221 379999
Q ss_pred EeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCC
Q 031223 73 LISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSP 122 (163)
Q Consensus 73 vl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (163)
||+||++++...+ ..++++++ ++++|+||||+|||+|+.++||++.+++
T Consensus 360 ILpGGfGd~~~~g-~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~ 409 (550)
T 1vco_A 360 LVPGGFGVRGIEG-KVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLK 409 (550)
T ss_dssp EECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCT
T ss_pred EECCCCCCcchhh-hHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCC
Confidence 9999998875533 34666664 5789999999999999999999887643
No 33
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.67 E-value=1.5e-17 Score=125.18 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=82.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CC---ChhHHHHHHHh-CCC-
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QD---SGISLQTVLEL-GPT- 97 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d---~~~~~~~i~~~-~~~- 97 (163)
+++|.|+...+ ....+.++|++.|+++.++++. +++. ++|+|||+||+... .+ ...+.++++++ +++
T Consensus 2 ~p~Igi~~~~~-~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (191)
T 2ywd_A 2 RGVVGVLALQG-DFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS 74 (191)
T ss_dssp -CCEEEECSSS-CHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred CcEEEEEecCC-chHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence 46799997653 4457899999999999888743 3443 69999999995321 11 11245677774 678
Q ss_pred CCEEEEehHHHHHHHHhCC-eeeeCCCcccccceeEEEeC--C-CC------cCccccCCCCceEEeeeeecee
Q 031223 98 VPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYD--E-KG------EDGLLAGLSKYVSISCYNIQCF 161 (163)
Q Consensus 98 ~PvLGIC~G~QlLa~a~Gg-~v~~~~~~~e~G~~~~i~~~--~-~~------~~~lf~~lp~~~~v~~~H~~~v 161 (163)
+|+||||+|||+|+.++|| ++.+. .|+. +.... . +. .+..+.++ +++.++++|++.+
T Consensus 75 ~PilGiC~G~Q~l~~~~gg~~~~~~-----lg~~-~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~Hs~~v 141 (191)
T 2ywd_A 75 LALFGTCAGAIWLAKEIVGYPEQPR-----LGVL-EAWVERNAFGRQVESFEEDLEVEGL-GSFHGVFIRAPVF 141 (191)
T ss_dssp CEEEEETHHHHHHEEEETTCTTCCC-----CCCE-EEEEETTCSCCSSSEEEEEEEETTT-EEEEEEEESCCEE
T ss_pred CeEEEECHHHHHHHHHhCCCCCCcc-----cccc-ceEEEcCCcCCccccccccccccCC-CceeEEEEcccce
Confidence 9999999999999999998 54322 2221 11111 0 00 12334555 6788999999876
No 34
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.67 E-value=5.5e-17 Score=139.83 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=80.8
Q ss_pred cCCChhhHhhHHhhhcCCCCCeEEEE-------ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCE
Q 031223 5 EAVPISKSLYLDDKKSKNNKNPIIVI-------DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRG 71 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Ilvi-------d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dg 71 (163)
+.++..|++++++++++....+|.++ |++.++...+.++..+.|..+++.+.+ .+++. ..++||
T Consensus 270 ~~~l~~w~~lv~~v~~~~~~v~i~~vGkyv~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DG 346 (545)
T 1s1m_A 270 EANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDA 346 (545)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSE
T ss_pred hHHHHHHHHHHHhccCCCCeEEeCCcCCeEEEEEHHHHHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCE
Confidence 46788999999999988877777766 433333434444333344566766654 22221 237999
Q ss_pred EEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCC
Q 031223 72 VLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSP 122 (163)
Q Consensus 72 vvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~ 122 (163)
|||+|||+++... ...++++++ ++++|+||||+|||+|+.++||++.+++
T Consensus 347 IilsGGpg~~~~~-g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~ 397 (545)
T 1s1m_A 347 ILVPGGFGYRGVE-GMITTARFARENNIPYLGICLGMQVALIDYARHVANME 397 (545)
T ss_dssp EEECCCCSSTTHH-HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCT
T ss_pred EEECCCCCCccch-hhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCC
Confidence 9999999887543 234666664 5789999999999999999999998653
No 35
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.61 E-value=6.7e-16 Score=119.43 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=85.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC---C---hhHHHHHHH
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---S---GISLQTVLE 93 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~---G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d---~---~~~~~~i~~ 93 (163)
.+++|.|++..+.+. ...++|+++ |+++.+++. .+++. ++|+|||+||+.+..+ . ..+.++|++
T Consensus 2 ~~~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~ 74 (227)
T 2abw_A 2 SEITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVH 74 (227)
T ss_dssp CCEEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHH
Confidence 347899998765554 568889888 988877753 34554 6999999999754321 1 234667777
Q ss_pred h-CC-CCCEEEEehHHHHHHHHhCCeeeeCC--CcccccceeEEEeCCCC---------cCccccCC----CCceEEeee
Q 031223 94 L-GP-TVPLFGVCMGLQCIGEAFGGKIVRSP--LGVMHGKSSLVYYDEKG---------EDGLLAGL----SKYVSISCY 156 (163)
Q Consensus 94 ~-~~-~~PvLGIC~G~QlLa~a~Gg~v~~~~--~~~e~G~~~~i~~~~~~---------~~~lf~~l----p~~~~v~~~ 156 (163)
+ ++ ++|+||||+|||+|+.++||++.... ..++.|+. ++++.... .+..+.++ ++.|.++..
T Consensus 75 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 153 (227)
T 2abw_A 75 FIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGL-DITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACI 153 (227)
T ss_dssp HHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCE-EEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEE
T ss_pred HHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCce-eEEEEecCCCccccccccccccccccccCCCceeEEEE
Confidence 4 67 89999999999999999999864321 01345654 33322100 01123333 356777888
Q ss_pred eecee
Q 031223 157 NIQCF 161 (163)
Q Consensus 157 H~~~v 161 (163)
|++.|
T Consensus 154 h~~~v 158 (227)
T 2abw_A 154 RAPYI 158 (227)
T ss_dssp SCCEE
T ss_pred EcceE
Confidence 87665
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.16 E-value=1.9e-10 Score=107.36 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCC--CCHHHHhccCCCEEEeCCCCCCCCCC---h-----------
Q 031223 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS---G----------- 85 (163)
Q Consensus 23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~--~~~~~~~~~~~dgvvl~GG~~~~~d~---~----------- 85 (163)
.++||+||++.+++ ...+.++|+..|+++++++..+ ....++ .++|+||++||.. ..|. +
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfS-ygD~l~~g~~~a~~~l~~~ 1122 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFS-YGDVLGAGEGWAKSILFNH 1122 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCG-GGGTTSTTHHHHHHHHTSH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCc-chhhhccchhHHHHHHhch
Confidence 46799999997775 5789999999999998875310 001223 2799999999943 2221 1
Q ss_pred hHHHHHHH-h-CCCCCEEEEehHHHHHHHH---hCCe-----eeeCCCcc-cccceeEEEeCCCCcCccccCCC-CceEE
Q 031223 86 ISLQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLGV-MHGKSSLVYYDEKGEDGLLAGLS-KYVSI 153 (163)
Q Consensus 86 ~~~~~i~~-~-~~~~PvLGIC~G~QlLa~a---~Gg~-----v~~~~~~~-e~G~~~~i~~~~~~~~~lf~~lp-~~~~v 153 (163)
.+.+.+++ + ++++|+||||+|||+|+.+ +-|. +.+...+. +--|. .+++.. .++++|+++. +.+.+
T Consensus 1123 ~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~-~~~v~~-~~s~~~~~~~g~~~~i 1200 (1303)
T 3ugj_A 1123 RVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFS-LVEVTQ-SPSLLLQGMVGSQMPI 1200 (1303)
T ss_dssp HHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEE-EEEECC-CSCGGGTTCTTCEEEE
T ss_pred hHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCe-EEEECC-CCChhhhccCCCEEee
Confidence 13445665 3 6789999999999999986 2233 44443221 22232 455543 2578888874 35666
Q ss_pred eeeeec
Q 031223 154 SCYNIQ 159 (163)
Q Consensus 154 ~~~H~~ 159 (163)
+-.|++
T Consensus 1201 ~vaHgE 1206 (1303)
T 3ugj_A 1201 AVSHGE 1206 (1303)
T ss_dssp EEEESS
T ss_pred eeEeCC
Confidence 677764
No 37
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.95 E-value=2.8e-10 Score=88.31 Aligned_cols=89 Identities=9% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCCeEEEEECCC------ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHH
Q 031223 23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL 92 (163)
Q Consensus 23 ~~~~Ilvid~~~------~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~ 92 (163)
...+|+||+... .+..++.++|+++|+++..++......+.+. +.|+|+++||..... ....+.+.|+
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG~~~~~~~~l~~~gl~~~l~ 107 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGLLAPMA 107 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCCcHHHHHHHHHHCChHHHHH
Confidence 357899999864 4666788999999998777643211225555 689999988742110 0011356677
Q ss_pred H-hCCCCCEEEEehHHHHHHHH
Q 031223 93 E-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 93 ~-~~~~~PvLGIC~G~QlLa~a 113 (163)
+ +++++|++|+|.|||+|+..
T Consensus 108 ~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 108 DRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHHTTCEEEEETHHHHHTSSB
T ss_pred HHHHcCCEEEEECHHHHhhccc
Confidence 6 46789999999999999874
No 38
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.91 E-value=2.6e-09 Score=79.84 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEE
Q 031223 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL 101 (163)
...+.|++.|++++++..+. ..++++...+||+|||+||++.. .+.+.+.++++++ ++++||.
T Consensus 26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~ia 105 (177)
T 4hcj_A 26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVA 105 (177)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEE
Confidence 46788999999999886542 12344444579999999997532 2345678889885 7899999
Q ss_pred EEehHHHHHHHH
Q 031223 102 GVCMGLQCIGEA 113 (163)
Q Consensus 102 GIC~G~QlLa~a 113 (163)
+||.|.++|+.+
T Consensus 106 aIC~g~~~La~a 117 (177)
T 4hcj_A 106 GIGSGVVIMANA 117 (177)
T ss_dssp EETTHHHHHHHT
T ss_pred EecccHHHHHHC
Confidence 999999999986
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.87 E-value=8.3e-09 Score=77.60 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCCC----------------HHHHhccCCCEEEeCCCCCC-
Q 031223 21 KNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGA- 80 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~~----------------~~~~~~~~~dgvvl~GG~~~- 80 (163)
+.+.++|+|+-+.+.. ...+.+.|++.|+++.++..+... +++....++|+|||+||.+.
T Consensus 20 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~ 99 (193)
T 1oi4_A 20 AGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPD 99 (193)
T ss_dssp TTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHH
T ss_pred hccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHH
Confidence 3345678888542221 234788899999999988764211 11222236999999999532
Q ss_pred -CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 81 -PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 81 -~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
..+...+.++|+++ ++++|++|||.|.|+|+.+
T Consensus 100 ~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 100 YLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp HHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 11234578888884 7889999999999999997
No 40
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=1.6e-09 Score=82.84 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=61.6
Q ss_pred CCeEEEEECCCC------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCC------hhHHH
Q 031223 24 KNPIIVIDNYDS------FTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS------GISLQ 89 (163)
Q Consensus 24 ~~~Ilvid~~~~------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~------~~~~~ 89 (163)
+.+|++|+...+ +..++.++|+++|+++++++....+.++... .+.|+|+++||.. ... ..+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~--~~l~~~L~~~gl~~ 104 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT--FFLLQELKRTGADK 104 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH--HHHHHHHHHHTHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH--HHHHHHHHHCChHH
Confidence 479999975433 6778999999999998887533223322211 2799999988632 211 12466
Q ss_pred HHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 90 TVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 90 ~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
.|++ +.+++|++|||.|+|+++..
T Consensus 105 ~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 105 LILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred HHHHHHHcCCeEEEECHHHHHhccc
Confidence 6777 46789999999999999763
No 41
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.69 E-value=1.8e-08 Score=73.73 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=62.9
Q ss_pred CCeEEEEECCCC--h-HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--CCC
Q 031223 24 KNPIIVIDNYDS--F-TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QDS 84 (163)
Q Consensus 24 ~~~Ilvid~~~~--~-~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--~d~ 84 (163)
++||+|+-+.+. . .....+.|++.|+++.++.++.. +++++...+||+||++||.+.. ...
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLN 81 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccC
Confidence 467888844221 1 22467889999999998876420 1233333369999999996421 233
Q ss_pred hhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 85 ~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
..+.++++++ ++++|+.+||.|.++|+.+
T Consensus 82 ~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 82 EKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 4578889884 7899999999999999987
No 42
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.65 E-value=5.5e-08 Score=75.13 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=64.6
Q ss_pred CeEEEEECC----CCh----HHHHHHHHHHcCCEEEEEeCCCC--------------------------------CHHHH
Q 031223 25 NPIIVIDNY----DSF----TYNLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL 64 (163)
Q Consensus 25 ~~Ilvid~~----~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------------------------~~~~~ 64 (163)
++|+|+-.. +++ .....+.|++.|+++.++.++.. +++++
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~ 86 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA 86 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence 478888541 233 22356889999999998875421 01222
Q ss_pred hccCCCEEEeCCCCCC---CCC----------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC-Ce
Q 031223 65 KRKNPRGVLISPGPGA---PQD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG-GK 117 (163)
Q Consensus 65 ~~~~~dgvvl~GG~~~---~~d----------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G-g~ 117 (163)
...+||+|||+||.+. ..+ ...+.++++++ ++++||.+||.|.++|+.++. |+
T Consensus 87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCC
T ss_pred CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCCC
Confidence 1236999999999653 222 34578889885 789999999999999999976 64
No 43
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=98.59 E-value=1.1e-07 Score=71.40 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC---------------CHHHH-hccCCCEEEeCCCCCCCC-
Q 031223 23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ- 82 (163)
Q Consensus 23 ~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~-~~~~~dgvvl~GG~~~~~- 82 (163)
|.++|+|+-+.+-. ...+.+.|++.|+++.++..+.. +++++ ...+||.||++||.+.+.
T Consensus 2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~ 81 (197)
T 2rk3_A 2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN 81 (197)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence 45678888543221 22367889999999998875421 23444 335799999999964332
Q ss_pred --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+...+.++++++ ++++||.+||.|.++|+.+
T Consensus 82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 82 LSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 234568888884 7889999999999999987
No 44
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.58 E-value=1.5e-07 Score=73.46 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=62.8
Q ss_pred CCeEEEEEC----CCChH----HHHHHHHHHcCCEEEEEeCCCC--------------------------------CHHH
Q 031223 24 KNPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDEL--------------------------------TVEE 63 (163)
Q Consensus 24 ~~~Ilvid~----~~~~~----~~~~~~l~~~G~~~~v~~~~~~--------------------------------~~~~ 63 (163)
.++|+|+=. +++|. ....+.|++.|++++++.++.. ++++
T Consensus 23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~d 102 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQ 102 (242)
T ss_dssp -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGG
T ss_pred cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHH
Confidence 357888843 23332 1366889999999998876421 0112
Q ss_pred HhccCCCEEEeCCCCCCC--------------CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223 64 LKRKNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 64 ~~~~~~dgvvl~GG~~~~--------------~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~ 114 (163)
+...+||+|||+||.+.. .....+.++++++ ++++|+.+||.|.++|+.+-
T Consensus 103 v~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 103 IRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 222469999999996421 1224578888885 78999999999999999986
No 45
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.55 E-value=7.8e-08 Score=71.87 Aligned_cols=91 Identities=10% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCC-CC--------------HHHHhccCCCEEEeCCCCCCCC
Q 031223 22 NNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~-~~--------------~~~~~~~~~dgvvl~GG~~~~~ 82 (163)
.|++||+|+=. ++| .....+.|++.|+++.++.++. .+ ++++...+||.||++||.....
T Consensus 3 ~m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~ 81 (190)
T 4e08_A 3 HMSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSN 81 (190)
T ss_dssp -CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHH
T ss_pred CCCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHH
Confidence 45567888854 233 2236689999999999987652 11 2333334699999999842221
Q ss_pred ---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 ---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
....+.++++++ ++++||.+||.|.++|+.+
T Consensus 82 ~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 82 AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 234568888884 7899999999999999986
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.51 E-value=1.3e-07 Score=71.71 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=62.6
Q ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC-----------------CHHHHhccCCCEEEeCCCCCCCC--
Q 031223 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ-- 82 (163)
Q Consensus 25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~-----------------~~~~~~~~~~dgvvl~GG~~~~~-- 82 (163)
++|+|+-+.+.. .....+.|++.|+++.++.++.. +++++...+||+|||+||.+.+.
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l 82 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF 82 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHh
Confidence 468887543222 22366889999999998876421 13344335799999999964332
Q ss_pred -CChhHHHHHHHh-CCCCCEEEEehHH-HHHHHH
Q 031223 83 -DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA 113 (163)
Q Consensus 83 -d~~~~~~~i~~~-~~~~PvLGIC~G~-QlLa~a 113 (163)
+...+.++++++ ++++||.+||.|. ++|+.+
T Consensus 83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 234567888884 7889999999999 999975
No 47
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.50 E-value=3.2e-07 Score=68.32 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=62.2
Q ss_pred CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC-------------------CHHHHhccCCCEEEeCCCCC
Q 031223 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG 79 (163)
Q Consensus 23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~-------------------~~~~~~~~~~dgvvl~GG~~ 79 (163)
..++|+|+-+ +++ ...+.+.|++.|+++.++..+.. +++++...+||+|||+||..
T Consensus 8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 86 (190)
T 2vrn_A 8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV 86 (190)
T ss_dssp TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence 3467888854 333 22366889999999988865421 11222223799999999963
Q ss_pred CC---CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 80 AP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 80 ~~---~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+ .....+.++++++ ++++||.+||.|.++|+.+
T Consensus 87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 32 2345678899884 7889999999999999996
No 48
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.39 E-value=9.6e-07 Score=67.15 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=60.7
Q ss_pred CeEEEE--ECCCC-hHHHHHHHHHHc-CCEEEEEeCCCC-------------CHHHHhccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVI--DNYDS-FTYNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvi--d~~~~-~~~~~~~~l~~~-G~~~~v~~~~~~-------------~~~~~~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.+|+|+ |.... ....+.+.|++. |+++.++..+.. +++++ ..++|.||++||.+.....+.+
T Consensus 4 ~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~l 82 (206)
T 3f5d_A 4 KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKKL 82 (206)
T ss_dssp EEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHHH
Confidence 467777 32222 233567788877 889888865421 11222 2379999999997533344567
Q ss_pred HHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 88 LQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 88 ~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.++++++ ++++|+.+||.|.++|+.+
T Consensus 83 ~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 83 LHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 8899885 7899999999999999987
No 49
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.37 E-value=7.5e-07 Score=67.99 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCCC----H-----------------------HHHhccCCCEEEeCCCCCCC---CCChhHH
Q 031223 39 NLCQYMGELGYHFEVYRNDELT----V-----------------------EELKRKNPRGVLISPGPGAP---QDSGISL 88 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~----~-----------------------~~~~~~~~dgvvl~GG~~~~---~d~~~~~ 88 (163)
...+.|++.|+++.++.++... . +++...+||+|||+||.+.. .....+.
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 3677899999999998764211 0 11112379999999997642 2345678
Q ss_pred HHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 89 QTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 89 ~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
++++++ ++++||.+||.|.++|+.+
T Consensus 113 ~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 113 YVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 899885 7889999999999999976
No 50
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.36 E-value=6.1e-07 Score=65.95 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=58.5
Q ss_pred CCeEEEEECCC--C---hHHHHHHHHHHcCCEEEEEeCCC---------------CCHHHH--hccCCCEEEeCCC--C-
Q 031223 24 KNPIIVIDNYD--S---FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P- 78 (163)
Q Consensus 24 ~~~Ilvid~~~--~---~~~~~~~~l~~~G~~~~v~~~~~---------------~~~~~~--~~~~~dgvvl~GG--~- 78 (163)
+++|+|+-+.. + |.. .+.+.+.|+++.++..+. ..++++ ...+||.||++|| .
T Consensus 2 ~~~v~ill~~~~~g~~~~~~--~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~ 79 (175)
T 3cne_A 2 AKKVAVLAVNPVNGCGLFQY--LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVP 79 (175)
T ss_dssp CCEEEEEECSSBCHHHHHHH--HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGG
T ss_pred CcEEEEEEecCcCCCccchh--hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcc
Confidence 46788886531 2 322 233336799999887641 112333 2247999999999 4
Q ss_pred CCC--C---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 79 GAP--Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 79 ~~~--~---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+.. . ....+.++++++ ++++|+.+||.|.++|+.+
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 80 VFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred cHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 321 1 223467888884 7889999999999999987
No 51
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.33 E-value=1.2e-06 Score=66.63 Aligned_cols=89 Identities=6% Similarity=0.017 Sum_probs=60.4
Q ss_pred CeEEEE--ECCCC-hHHHHHHHHH--------HcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCC
Q 031223 25 NPIIVI--DNYDS-FTYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPG 79 (163)
Q Consensus 25 ~~Ilvi--d~~~~-~~~~~~~~l~--------~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~ 79 (163)
.+|+|+ |.... ....+.+.|+ +.++++.++..+.. +++++...+||.|||+||..
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 357666 32222 2345677787 67889988876421 12333334799999999965
Q ss_pred CCC-CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 80 APQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 80 ~~~-d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
... ....+.++++++ ++++||.+||.|..+|+.+
T Consensus 86 ~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 86 WSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 322 224578888884 7889999999999999986
No 52
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.32 E-value=2e-07 Score=70.82 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=62.6
Q ss_pred CCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCC-C--------------CHHHHhccCCCEEEeCCCCCCC--
Q 031223 22 NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGAP-- 81 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~-~--------------~~~~~~~~~~dgvvl~GG~~~~-- 81 (163)
+|.++|+|+-..+-. ...+.+.|+..|+++.++..+. . +++++...+||.|||+||...+
T Consensus 7 ~m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 86 (208)
T 3ot1_A 7 GMSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA 86 (208)
T ss_dssp --CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH
T ss_pred ccCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH
Confidence 345578888543221 2236788999999999887652 1 1223322479999999996322
Q ss_pred -CCChhHHHHHHHh-CCCCCEEEEehHH-HHHHHH
Q 031223 82 -QDSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA 113 (163)
Q Consensus 82 -~d~~~~~~~i~~~-~~~~PvLGIC~G~-QlLa~a 113 (163)
.....+.++++++ ++++||.+||.|. .+|+.+
T Consensus 87 l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 87 FADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 2344678889884 7899999999999 899875
No 53
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.31 E-value=8.3e-07 Score=66.10 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=60.2
Q ss_pred CeEEEEEC--CC-ChHHHHHHHHHH-cCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC-CCCh
Q 031223 25 NPIIVIDN--YD-SFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG 85 (163)
Q Consensus 25 ~~Ilvid~--~~-~~~~~~~~~l~~-~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~-~d~~ 85 (163)
++|+|+=. .. .....+.+.|++ .|+++.++..+.. ++++....+||+|||+||.+.. ....
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA 81 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence 35777722 11 122346778888 8999998876421 1222222379999999996421 2234
Q ss_pred hHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+.++++++ ++++||.+||.|.++|+.+
T Consensus 82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 82 DLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 567888884 7889999999999999986
No 54
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.31 E-value=2.5e-06 Score=75.16 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=65.5
Q ss_pred CCCeEEEEECCCChH----HHHHHHHHHcCCEEEEEeCCCC-----CHHHHhccCCCEEEeCCCCCCC----------CC
Q 031223 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAP----------QD 83 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~----~~~~~~l~~~G~~~~v~~~~~~-----~~~~~~~~~~dgvvl~GG~~~~----------~d 83 (163)
++.||+|+=..+.+. ..+.++|++.|+.++++.+... ++++.....||+|||.||..+. ..
T Consensus 536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~ 615 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFP 615 (688)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSC
T ss_pred cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhcc
Confidence 446798883322233 3477899999999999976321 2333344579999999996541 12
Q ss_pred ChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 84 SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 84 ~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
.+...+++++ ++.+|||.+||.|-|+|..+
T Consensus 616 ~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 616 AGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 3457888988 58899999999999999875
No 55
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.28 E-value=9e-07 Score=73.18 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=63.7
Q ss_pred CCCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC------------------------------CHHHHhc
Q 031223 21 KNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKR 66 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~ 66 (163)
|.+.+||+|+=. ++| .....+.|++.|++++++.++.. ++++...
T Consensus 9 m~~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 87 (396)
T 3uk7_A 9 MANSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDL 87 (396)
T ss_dssp --CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCG
T ss_pred hhcCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCc
Confidence 445567888843 233 22367889999999998865421 1222222
Q ss_pred cCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 67 KNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+||.||++||.+.. .....+.++++++ ++++|+.+||.|.++|+.+
T Consensus 88 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 88 SKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred ccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 479999999996421 2334578888884 7899999999999999987
No 56
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.22 E-value=3e-06 Score=69.99 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=64.1
Q ss_pred CCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC------------------------------CHHHHhcc
Q 031223 22 NNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRK 67 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~~ 67 (163)
.+..+|+|+=. +++ .....+.|++.|+++.++.++.. ++++....
T Consensus 203 ~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 281 (396)
T 3uk7_A 203 GANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS 281 (396)
T ss_dssp CCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred hccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcc
Confidence 44567888843 233 22467889999999998865411 12233224
Q ss_pred CCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
+||.||++||.+.. .....+.++++++ ++++|+.+||.|.++|+.+
T Consensus 282 ~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 79999999996421 2344578888884 7899999999999999997
No 57
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.16 E-value=1.7e-06 Score=67.68 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=54.2
Q ss_pred HHHHHHHcCCEEEEEeCCCCC-------------------------------------HHHHhccCCCEEEeCCCCCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT-------------------------------------VEELKRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~-------------------------------------~~~~~~~~~dgvvl~GG~~~~~ 82 (163)
..+.|++.|+++++..+.... ++++...+||+|+|+||.+...
T Consensus 40 p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~ 119 (247)
T 3n7t_A 40 PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALY 119 (247)
T ss_dssp HHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCSTTHHH
T ss_pred HHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCCCchhh
Confidence 667899999999988653110 0111123699999999975422
Q ss_pred ---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 ---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
....+.++++++ ++++||.+||.|.++|+.+
T Consensus 120 ~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 120 DFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 234578888885 7899999999999999886
No 58
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.14 E-value=3.1e-06 Score=64.24 Aligned_cols=90 Identities=8% Similarity=0.049 Sum_probs=58.4
Q ss_pred CCCCeEEEEEC--CCCh-HHHHHHHHHHc-------CCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCC
Q 031223 22 NNKNPIIVIDN--YDSF-TYNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 22 ~~~~~Ilvid~--~~~~-~~~~~~~l~~~-------G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG 77 (163)
++.++|+|+=+ .... ...+.+.|+.. ++++.++..+. .+++++ .++|.|||+||
T Consensus 6 ~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~--~~~D~livpGg 83 (209)
T 3er6_A 6 KKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSF--DFTNILIIGSI 83 (209)
T ss_dssp -CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence 34456777732 2222 22355666654 37777775432 112232 37999999998
Q ss_pred CCCC----CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 78 PGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 78 ~~~~----~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.+.. .+...+.++++++ ++++++.+||-|..+|+.+
T Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 6421 2345678899885 7889999999999999997
No 59
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.13 E-value=1.8e-06 Score=76.56 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--C
Q 031223 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--Q 82 (163)
Q Consensus 23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--~ 82 (163)
++.+|+|+=. ++| ...+.+.|++.|++++++..... ++++.....||+|||+|| +.. .
T Consensus 599 ~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr 676 (753)
T 3ttv_A 599 KGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIA 676 (753)
T ss_dssp TTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTT
T ss_pred CCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhh
Confidence 4468888832 233 23477899999999999875421 122233346999999999 322 2
Q ss_pred CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
....+.++|+++ ..+|||.+||.|.++|+.|
T Consensus 677 ~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 677 DNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 345678999984 7899999999999999876
No 60
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.13 E-value=2.8e-06 Score=64.23 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=59.1
Q ss_pred CCeEEEEECCCChH----HHHHHHHHHcC------CEEEEEeCCCC-------------CHHHHhccCCCEEEeCCCCCC
Q 031223 24 KNPIIVIDNYDSFT----YNLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGA 80 (163)
Q Consensus 24 ~~~Ilvid~~~~~~----~~~~~~l~~~G------~~~~v~~~~~~-------------~~~~~~~~~~dgvvl~GG~~~ 80 (163)
.++|+|+=+. +|. ..+.+.|+..+ +++.++..+.. ++++....+||.|||+||...
T Consensus 5 ~~~v~ill~~-g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~ 83 (202)
T 3gra_A 5 PYRVDFILLE-HFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRT 83 (202)
T ss_dssp CEEEEEEECT-TBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTC
T ss_pred cEEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCch
Confidence 3567777442 332 23556666553 77877765421 112221247999999999754
Q ss_pred CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
....+.+.++++++ ++++++.+||-|..+|+.+
T Consensus 84 ~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 84 PLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp CSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred hhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 33226678899884 6889999999999999997
No 61
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.09 E-value=3.3e-06 Score=65.86 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=54.2
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------------------------------------HHHHhccCCCEEEeCCCCCCCC-
Q 031223 40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAPQ- 82 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------------------------------------~~~~~~~~~dgvvl~GG~~~~~- 82 (163)
..+.|++.|++++++.+.... ++++...+||+|+|+||.+...
T Consensus 34 p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~ 113 (244)
T 3kkl_A 34 SFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFD 113 (244)
T ss_dssp HHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCchhhh
Confidence 667899999999988653110 1111223699999999975422
Q ss_pred --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
....+.++++++ ++++||.+||.|..+|+.+
T Consensus 114 l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 114 YPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred cccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 334578888884 7899999999999999876
No 62
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.08 E-value=4.3e-06 Score=68.93 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCCC----------------HHHHhccCCCEEEeCCCCCCC--
Q 031223 24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP-- 81 (163)
Q Consensus 24 ~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~----------------~~~~~~~~~dgvvl~GG~~~~-- 81 (163)
..+|+|+-+ ++| ...+.+.|+..|+++.++..+... ++++...+||.|||+||.+..
T Consensus 10 mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l 88 (365)
T 3fse_A 10 KKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKM 88 (365)
T ss_dssp -CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHH
T ss_pred ceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhc
Confidence 356888743 233 223678899999999988754211 111212259999999996421
Q ss_pred CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.....+.++++++ .+++||.+||.|..+|+.+
T Consensus 89 ~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 89 RRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp TTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 2334678889884 7899999999999999986
No 63
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.07 E-value=3.8e-06 Score=65.18 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=53.9
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------------------------------------HHHHhccCCCEEEeCCCCCCCC-
Q 031223 40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAPQ- 82 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------------------------------------~~~~~~~~~dgvvl~GG~~~~~- 82 (163)
..+.|++.|++++++.++... ++++...+||+|||+||.+...
T Consensus 34 p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~ 113 (243)
T 1rw7_A 34 PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFD 113 (243)
T ss_dssp HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCCchhh
Confidence 667889999999988653210 1111123699999999976322
Q ss_pred --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
....+.++++++ ++++||.+||.|.++|+.+
T Consensus 114 l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 114 YPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred cccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 234578888885 7899999999999999886
No 64
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.04 E-value=6.5e-06 Score=63.52 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=61.1
Q ss_pred CCCeEEEEECCCCh----HHHHHHHHHH-cCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--
Q 031223 23 NKNPIIVIDNYDSF----TYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-- 81 (163)
Q Consensus 23 ~~~~Ilvid~~~~~----~~~~~~~l~~-~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~-- 81 (163)
|.++|+|+=+. +| ...+.+.|+. .|+++.++..+.. +++++ .+||.|||+||++..
T Consensus 4 m~~~V~ill~~-gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~ 80 (231)
T 3noq_A 4 MAVQIGFLLFP-EVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGAL 80 (231)
T ss_dssp CCEEEEEECCT-TCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHH
T ss_pred CcEEEEEEEeC-CCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhh
Confidence 44678888432 33 2236678877 6888888765410 11222 269999999997532
Q ss_pred CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
...+.+.++++++ .++++|.+||-|..+|+.+
T Consensus 81 ~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 81 MEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 2345678899984 8899999999999999986
No 65
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.01 E-value=1.4e-05 Score=70.57 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=65.4
Q ss_pred CCCCeEEEEECC-CChHH----HHHHHHHHcCCEEEEEeCCCC-----CHHHHhccCCCEEEeCCCCCC-----------
Q 031223 22 NNKNPIIVIDNY-DSFTY----NLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGA----------- 80 (163)
Q Consensus 22 ~~~~~Ilvid~~-~~~~~----~~~~~l~~~G~~~~v~~~~~~-----~~~~~~~~~~dgvvl~GG~~~----------- 80 (163)
..+.||+|+=.. +++.. .+.++|++.|++++++..... ++++.....||+|||.||..+
T Consensus 527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 345689888541 34432 477899999999999976421 122333457999999999533
Q ss_pred -----C---CCChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223 81 -----P---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 81 -----~---~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a 113 (163)
+ ...+...+++++ +..+|||.+||.|-++|..+
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 2 233457888888 57889999999999999865
No 66
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=97.91 E-value=1.3e-05 Score=62.81 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCeEEEEECCCChH----HHHHHHH-HHcCCEEEEEeCCCCC--------------HHHHhccCCCEEEeCCCC-CC--
Q 031223 23 NKNPIIVIDNYDSFT----YNLCQYM-GELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGP-GA-- 80 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~----~~~~~~l-~~~G~~~~v~~~~~~~--------------~~~~~~~~~dgvvl~GG~-~~-- 80 (163)
+.++|+|+=+. +|. ....+.| +..|+++.++..+... +++.. ..||.|||+||. +.
T Consensus 22 m~~~I~ill~~-gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~ 99 (253)
T 3ewn_A 22 GDEQIAMLVYP-GMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA 99 (253)
T ss_dssp CCCEEEEECCT-TBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred CCeEEEEEeCC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence 44678888442 332 2366778 5678999988754211 12222 257999999996 42
Q ss_pred CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
......+.++|+++ +++++|.+||-|..+|+.+
T Consensus 100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 100 AASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 12345678999984 8899999999999999987
No 67
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=97.89 E-value=9.8e-06 Score=71.95 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC---
Q 031223 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--- 81 (163)
Q Consensus 23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--- 81 (163)
.+++|+|+=.. ++ ...+.+.|++.|+++.++..... +++++....||+|||+||....
T Consensus 533 ~~rkVaILl~d-Gfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l 611 (715)
T 1sy7_A 533 KSRRVAIIIAD-GYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL 611 (715)
T ss_dssp TTCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred CCCEEEEEEcC-CCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence 34678888442 32 22477889999999999876421 1122222368999999984322
Q ss_pred CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G 115 (163)
.....+.++|+++ ++++||.+||.|..+|+.++|
T Consensus 612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 1234578888884 789999999999999999854
No 68
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=97.80 E-value=1.8e-05 Score=63.13 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=54.5
Q ss_pred HHHHHHHcCCEEEEEeCCCCC-------------------------------HHHH-----hccCCCEEEeCCCCCCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT-------------------------------VEEL-----KRKNPRGVLISPGPGAPQD 83 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~-------------------------------~~~~-----~~~~~dgvvl~GG~~~~~d 83 (163)
..+.|++.|+++.++.++... ++++ ...+||+|||+||.+...+
T Consensus 81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~ 160 (291)
T 1n57_A 81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG 160 (291)
T ss_dssp HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSS
T ss_pred HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhhh
Confidence 667889999999988754211 1221 1247999999999654322
Q ss_pred ---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223 84 ---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (163)
Q Consensus 84 ---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~ 114 (163)
...+.++|+++ +++++|.+||.|..+|+.+-
T Consensus 161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 34578888885 78899999999999888763
No 69
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=97.79 E-value=7.8e-06 Score=62.17 Aligned_cols=89 Identities=12% Similarity=0.202 Sum_probs=58.1
Q ss_pred CCCeEEEEECCCC--h-HHHHHHHHHHc--CCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--
Q 031223 23 NKNPIIVIDNYDS--F-TYNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-- 81 (163)
Q Consensus 23 ~~~~Ilvid~~~~--~-~~~~~~~l~~~--G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~-- 81 (163)
..++|+|+=..+- . ...+.+.|+.. ++++.++..+.. .+++. ..+|.|||+||.+..
T Consensus 3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~~ 80 (211)
T 3mgk_A 3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTREK 80 (211)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHHH
T ss_pred CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhC--CCCCEEEECCCcchhhh
Confidence 3467887743221 1 22366788776 478887765320 11111 148999999996432
Q ss_pred CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223 82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a 113 (163)
.....+.++++++ +++++|.+||-|..+|+.+
T Consensus 81 ~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 81 VNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp TTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 2334678889884 6889999999999999986
No 70
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=97.58 E-value=7.7e-05 Score=55.89 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=53.2
Q ss_pred eEEEEEC--CCCh-HHHHHHHHHHcCCEEEEEeCCC-----------------CCHHHHh-----ccCCCEEEeCCCCCC
Q 031223 26 PIIVIDN--YDSF-TYNLCQYMGELGYHFEVYRNDE-----------------LTVEELK-----RKNPRGVLISPGPGA 80 (163)
Q Consensus 26 ~Ilvid~--~~~~-~~~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~-----~~~~dgvvl~GG~~~ 80 (163)
||+|+=+ .... .....+.|++.|++++++.... ..++++. ..+||+|||+||...
T Consensus 6 kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~ 85 (194)
T 4gdh_A 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG 85 (194)
T ss_dssp CEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh
Confidence 4666632 2222 2236778999999887664311 0111211 125899999999432
Q ss_pred C---CCChhHHHHHHHh-C-CCCCEEEEehHHHHHHHH
Q 031223 81 P---QDSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 81 ~---~d~~~~~~~i~~~-~-~~~PvLGIC~G~QlLa~a 113 (163)
+ .+.+.+.++++++ + .++++..||.|. +|+.+
T Consensus 86 ~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~a 122 (194)
T 4gdh_A 86 AKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKT 122 (194)
T ss_dssp HHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHH
T ss_pred HhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhh
Confidence 2 2345678899885 4 579999999998 45544
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.43 E-value=7.3e-05 Score=57.90 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=54.6
Q ss_pred CeEEEEECCCCh----HHHHHHHHHHcC--CEEEEEeCCC--------------CCHHHHhccCCCEEEeCCC-CCCC--
Q 031223 25 NPIIVIDNYDSF----TYNLCQYMGELG--YHFEVYRNDE--------------LTVEELKRKNPRGVLISPG-PGAP-- 81 (163)
Q Consensus 25 ~~Ilvid~~~~~----~~~~~~~l~~~G--~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG-~~~~-- 81 (163)
++|+|+=. ++| ...+.+.|+..+ +++.++. +. .++++ ..+||.|||+|| ++..
T Consensus 21 ~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~~l 96 (236)
T 3bhn_A 21 YKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIPAA 96 (236)
T ss_dssp EEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHHHH
T ss_pred CEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc--ccCCCEEEEcCCccCHhhh
Confidence 46777743 233 223667777755 6777775 31 01222 237999999999 4431
Q ss_pred CCChhHHHHHHHhCCCC-CEEEEehHHHHHHHH
Q 031223 82 QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA 113 (163)
Q Consensus 82 ~d~~~~~~~i~~~~~~~-PvLGIC~G~QlLa~a 113 (163)
.....+.+++ .+.+++ +|.+||-|..+|+.+
T Consensus 97 ~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 97 LQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred ccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 1234567788 666666 999999999999987
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=96.92 E-value=0.0005 Score=54.90 Aligned_cols=104 Identities=10% Similarity=0.120 Sum_probs=68.2
Q ss_pred CChhhHhhHHhhhcCCCCCeEEEEECCCC----hHHHHHHHHHHcCC-EEEEEeCCCC---CHHHH-hc-cCCCEEEeCC
Q 031223 7 VPISKSLYLDDKKSKNNKNPIIVIDNYDS----FTYNLCQYMGELGY-HFEVYRNDEL---TVEEL-KR-KNPRGVLISP 76 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~----~~~~~~~~l~~~G~-~~~v~~~~~~---~~~~~-~~-~~~dgvvl~G 76 (163)
+...|+.|++..... ..+|++|-.... +...+.++++++|+ .+++++.... +.+++ .. .+.|+|+++|
T Consensus 41 ~~~i~~~~v~lagg~--~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~G 118 (291)
T 3en0_A 41 GREILQTFWSRSGGN--DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTG 118 (291)
T ss_dssp CCHHHHHHHHHTTGG--GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECC
T ss_pred hHHHHHHHHHHcCCC--CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECC
Confidence 577889998877532 478999955432 34557788888999 6777765311 11111 11 2799999999
Q ss_pred CCCCCC----CChhHHHHHHH-hCCC-CCEEEEehHHHHHHH
Q 031223 77 GPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCMGLQCIGE 112 (163)
Q Consensus 77 G~~~~~----d~~~~~~~i~~-~~~~-~PvLGIC~G~QlLa~ 112 (163)
|..... ....+.+.|++ +.++ .|+.|.|-|+-+++.
T Consensus 119 Gnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 119 GDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp SCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 843110 11234667777 4677 999999999988765
No 73
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=96.39 E-value=0.18 Score=39.07 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=73.0
Q ss_pred CCCCCeEEEEECCC--------------ChHHHHHHHHHHcCCEEEEEeCCCC----CHHHHhccCCCEEEeCCCCCCCC
Q 031223 21 KNNKNPIIVIDNYD--------------SFTYNLCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 21 ~~~~~~Ilvid~~~--------------~~~~~~~~~l~~~G~~~~v~~~~~~----~~~~~~~~~~dgvvl~GG~~~~~ 82 (163)
|....||+|..-+- +....+.+.|++.|+++++...++. +.+.+. +||.||+.|......
T Consensus 4 ~~~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~ 81 (252)
T 1t0b_A 4 MTTPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDE 81 (252)
T ss_dssp --CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGG
T ss_pred cCCCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCc
Confidence 44457899995321 1122357788889999998653221 223343 899999843211111
Q ss_pred CChhHHHHHHH-hCCCCCEEEEehHH--HHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEe
Q 031223 83 DSGISLQTVLE-LGPTVPLFGVCMGL--QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSIS 154 (163)
Q Consensus 83 d~~~~~~~i~~-~~~~~PvLGIC~G~--QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~ 154 (163)
..++..+.+++ +.++.+++||=.|+ +-....+||.-. .+. .+.+....+.+.+ .++|+.+++|+.|.+.
T Consensus 82 l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~f~-~~~-~~~~~~~~v~v~~-~~HPit~gl~~~f~~~ 153 (252)
T 1t0b_A 82 VKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTCN-LKW-READEKERLWVVA-PGHPIVEGIGPYIELE 153 (252)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSCCC-CEE-EEEEEEEEEEESC-TTSGGGTTCCSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCccc-CCC-ccCCceEEEEECC-CCChhhcCCCCCcEec
Confidence 22334455555 57889999995553 445566787742 111 0112222344443 2789999999777654
No 74
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=95.96 E-value=0.018 Score=39.01 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=51.6
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCC
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPT 97 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~ 97 (163)
+++..++|+|||........+.+.|++.|+.+..........+.+....+|.||+-=.. ...+.-.+.+.+++ ....
T Consensus 2 ~~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 2 SLAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp ---CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGGTT
T ss_pred CCCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCcccCC
Confidence 45566899999976556667888899999987655321111223334579988883221 11112234555665 3457
Q ss_pred CCEEEEehHHH
Q 031223 98 VPLFGVCMGLQ 108 (163)
Q Consensus 98 ~PvLGIC~G~Q 108 (163)
.|++-+.-...
T Consensus 81 ~~ii~~s~~~~ 91 (140)
T 3grc_A 81 LAIVVVSANAR 91 (140)
T ss_dssp CEEEEECTTHH
T ss_pred CCEEEEecCCC
Confidence 89998875543
No 75
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=95.86 E-value=0.044 Score=36.54 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=49.9
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
+.+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+--... ..+.-.+.+.+++.....|++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP-RMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEE
Confidence 4557899999765566778889999999876643211112233345799888832211 112223455666655678998
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 84 ~~t~ 87 (130)
T 3eod_A 84 VISA 87 (130)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7764
No 76
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=95.66 E-value=0.016 Score=39.37 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=49.5
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~Pv 100 (163)
.+.++|+|||........+.+.|++.|+++..........+.+....+|.||+-- . +. +.-.+.+.+++.....|+
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~--~~~~g~~~~~~l~~~~~~~pi 78 (142)
T 2qxy_A 2 SLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-F--EGEESLNLIRRIREEFPDTKV 78 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-T--TTHHHHHHHHHHHHHCTTCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-C--CCCcHHHHHHHHHHHCCCCCE
Confidence 3557899999765566778889998999877543211112223345799888843 1 11 111234555554557999
Q ss_pred EEEehH
Q 031223 101 FGVCMG 106 (163)
Q Consensus 101 LGIC~G 106 (163)
+.+.--
T Consensus 79 i~ls~~ 84 (142)
T 2qxy_A 79 AVLSAY 84 (142)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 988643
No 77
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=95.54 E-value=0.016 Score=38.19 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=47.1
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTV 98 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~ 98 (163)
++|+++|+|+|........+.+.|+..|+.+............+....+|.+|+--......+.-.+.+.+++. ....
T Consensus 2 ~mm~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~ 81 (127)
T 2gkg_A 2 SHMSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence 45567899999765567778889988999876553211112222334799888732210011112345566664 4678
Q ss_pred CEEEE
Q 031223 99 PLFGV 103 (163)
Q Consensus 99 PvLGI 103 (163)
|++-+
T Consensus 82 ~ii~~ 86 (127)
T 2gkg_A 82 PIVII 86 (127)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99887
No 78
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=95.23 E-value=0.054 Score=42.82 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=49.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
|+|+|+-+.+.-...+.++|++.|+++.+.... .+.+ .++|.+|..||-+ .+....+.+ .. +|++||
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~--~~~DlvIvlGGDG------T~L~aa~~~~~~-~PilGI 97 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEEL--ENFDFIVSVGGDG------TILRILQKLKRC-PPIFGI 97 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGG--GGSSEEEEEECHH------HHHHHHTTCSSC-CCEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---cccc--CCCCEEEEECCCH------HHHHHHHHhCCC-CcEEEE
Confidence 679999765444667899999999988765432 1222 2689999999943 345555554 34 999999
Q ss_pred ehHH
Q 031223 104 CMGL 107 (163)
Q Consensus 104 C~G~ 107 (163)
=.|.
T Consensus 98 N~G~ 101 (278)
T 1z0s_A 98 NTGR 101 (278)
T ss_dssp ECSS
T ss_pred CCCC
Confidence 8874
No 79
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.96 E-value=0.071 Score=36.08 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=49.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
..++|+|||........+.+.|...|+.+............+. ...+|.||+--.. ...+.-.+.+.+++.....|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeE
Confidence 3468999997655667788899999987765532111122233 3479988873221 111122345566665567898
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 81 i~ls~ 85 (143)
T 3jte_A 81 IILTG 85 (143)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87774
No 80
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=94.90 E-value=0.12 Score=34.27 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=48.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
..++|+|+|........+.+.|...|+.+............+... .+|.+|+--......+.-.+.+.+++.....|++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 346899999765566678888998999876543211112223334 6998887322110012223455566555678998
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 84 ~~s~ 87 (132)
T 2rdm_A 84 YISG 87 (132)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8764
No 81
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=94.87 E-value=0.026 Score=38.13 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=48.9
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCC
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~ 97 (163)
.++....+|+|||........+.+.|++.| +++..........+.+....||.||+--.... .+.-++.+.+++....
T Consensus 9 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 87 (135)
T 3snk_A 9 VTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGD-LLGKPGIVEARALWAT 87 (135)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTG-GGGSTTHHHHHGGGTT
T ss_pred ccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCC-chHHHHHHHHHhhCCC
Confidence 344455789999986556777888999999 87765532111112222347898887211100 1111345666665457
Q ss_pred CCEEEEeh
Q 031223 98 VPLFGVCM 105 (163)
Q Consensus 98 ~PvLGIC~ 105 (163)
.|++-+.-
T Consensus 88 ~~ii~~s~ 95 (135)
T 3snk_A 88 VPLIAVSD 95 (135)
T ss_dssp CCEEEEES
T ss_pred CcEEEEeC
Confidence 99988764
No 82
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=94.81 E-value=0.085 Score=36.29 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
..++|+|||........+.+.|...|+.+............+....+|.||+--.... .+.-.+.+.+++.....|++-
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEE
Confidence 3478999997655677788889889988765432111122233347998887322111 122234555666556789988
Q ss_pred EehH
Q 031223 103 VCMG 106 (163)
Q Consensus 103 IC~G 106 (163)
+.-.
T Consensus 85 ls~~ 88 (154)
T 2rjn_A 85 ISGY 88 (154)
T ss_dssp EECG
T ss_pred EecC
Confidence 8754
No 83
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=94.78 E-value=0.044 Score=36.39 Aligned_cols=79 Identities=13% Similarity=0.238 Sum_probs=48.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~Pv 100 (163)
.++|+|+|........+.+.|++.|+.+..........+.+....+|.||+--.. +... -.+.+.+++. ....|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhhhccCCCCE
Confidence 4689999976556777888999999876655321111222334579988873221 1111 2345666664 567888
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+-+.
T Consensus 81 i~~s 84 (127)
T 3i42_A 81 VAVS 84 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 84
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=94.73 E-value=0.058 Score=36.44 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=48.6
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP 99 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~P 99 (163)
+..++|+|||........+.+.|+..|+.+............+....+|.||+--... ..+.-.+.+.+++ .....|
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCS-SSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCCCC
Confidence 3457899999765567778889998998766543211112223334688888732211 1122234566666 345688
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++.+.-
T Consensus 84 ii~~s~ 89 (142)
T 3cg4_A 84 IVMLTA 89 (142)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887763
No 85
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=94.68 E-value=0.055 Score=36.36 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=48.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC---C-CCCChhHHHHHHHhCCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---A-PQDSGISLQTVLELGPTVP 99 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~---~-~~d~~~~~~~i~~~~~~~P 99 (163)
.++|+|+|........+.+.|+..|+.+............+....+|.+|+--... . ..+.-.+.+.+++.....|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 46899999765567778888988899877553211112223334688888733211 0 1111234555565556799
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++.+.-
T Consensus 83 ii~ls~ 88 (140)
T 2qr3_A 83 VVLFTA 88 (140)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 998874
No 86
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=94.65 E-value=0.09 Score=36.36 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=48.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~Pv 100 (163)
..++|+|||........+.+.|++.|+.+..........+.+....||.||+-=.. ...+.-.+.+.+++. ....|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCcCCCCE
Confidence 34789999976556777888999999887655321111223334579988883221 111222345566654 267899
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+-+.
T Consensus 85 i~~s 88 (154)
T 3gt7_A 85 ILLT 88 (154)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 87
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.65 E-value=0.073 Score=36.69 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
+...++|+|||....+...+.+.|.+.|+.+..........+.+....||.||+--.. ...+.-.+.+.+++.....|+
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTTSEE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCCCeE
Confidence 4445789999976556677888999899877655321111222334579988873221 111122345566665567898
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 90 i~~s~ 94 (153)
T 3hv2_A 90 ILLTG 94 (153)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 87764
No 88
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=94.59 E-value=0.058 Score=36.72 Aligned_cols=83 Identities=8% Similarity=0.063 Sum_probs=49.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP 99 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~P 99 (163)
++.++|+|||........+.+.|...|+.+............+....+|.||+--... ..+.-.+.+.+++ .....|
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMP-KISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHTSTTTTTSC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCC-CCCHHHHHHHHHcCcccCCCC
Confidence 3457899999876677788899998898776543210011222334799888832211 1122234555565 346789
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++-+.-
T Consensus 85 ii~ls~ 90 (147)
T 2zay_A 85 VIALSG 90 (147)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 998864
No 89
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=94.40 E-value=0.094 Score=35.24 Aligned_cols=79 Identities=9% Similarity=0.041 Sum_probs=48.0
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCC-CCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TVP 99 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~-~~P 99 (163)
...+.+|+|||........+.+.|+..|+.+............+....+|.+| .++ .+.-.+.+.+++. . ..|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCcc
Confidence 34557899999765566678888988999876543210112223334789888 222 1112345555555 5 789
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++-+.-
T Consensus 89 ii~ls~ 94 (137)
T 2pln_A 89 VLVSSD 94 (137)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 988764
No 90
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=94.37 E-value=0.077 Score=35.69 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHH-cCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGP 96 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~-~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~ 96 (163)
++..++|+|+|........+.+.|+. .|+. +............+....+|.||+--... ..+.-.+.+.+++ ...
T Consensus 5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMV-GMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCT-TSCHHHHHHHHHTSTTTT
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccC-CCcHHHHHHHHHhCcccc
Confidence 34557899999765566678888988 8998 55543211112223334799888843211 1122234555665 345
Q ss_pred CCCEEEEeh
Q 031223 97 TVPLFGVCM 105 (163)
Q Consensus 97 ~~PvLGIC~ 105 (163)
..|++.+.-
T Consensus 84 ~~~ii~~s~ 92 (143)
T 3cnb_A 84 NIIVIAMTG 92 (143)
T ss_dssp TSEEEEEES
T ss_pred CCcEEEEeC
Confidence 789988764
No 91
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=94.29 E-value=0.097 Score=34.46 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=46.7
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL 101 (163)
+..+|+|+|....+...+.+.|+..|+.+............+....+|.+++-=. .+. +.-.+.+.+++.....|++
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVI 79 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEE
Confidence 4468999997655666788888888987754432100112222347998887221 111 1123455566555678988
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 80 ~~s~ 83 (124)
T 1srr_A 80 IMTA 83 (124)
T ss_dssp EEES
T ss_pred EEEc
Confidence 7763
No 92
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=94.29 E-value=0.097 Score=36.32 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhcc--CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~--~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~P 99 (163)
+.++|+|||........+.+.|++.|+.+. .........+.+... .+|.||+--.. ...+.-.+.+.+++.....|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhCCCCc
Confidence 346899999765566678888999998875 332210112223333 68988873221 11122234566666566789
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++-++-
T Consensus 114 ii~ls~ 119 (157)
T 3hzh_A 114 VIMISA 119 (157)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 988774
No 93
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=94.21 E-value=0.13 Score=34.21 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh--CCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL--GPTV 98 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~--~~~~ 98 (163)
+++++|+|+|........+...|+ .|+.+..........+.+....+|.||+--.. +. +.-.+.+.+++. ..+.
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~~ 78 (133)
T 3nhm_A 2 SLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DGMDGYALCGHFRSEPTLKHI 78 (133)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhCCccCCC
Confidence 456789999976555666777777 78877655321111223334579988883221 11 222345556663 3478
Q ss_pred CEEEEeh
Q 031223 99 PLFGVCM 105 (163)
Q Consensus 99 PvLGIC~ 105 (163)
|++-+.-
T Consensus 79 pii~~s~ 85 (133)
T 3nhm_A 79 PVIFVSG 85 (133)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 9988763
No 94
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=94.15 E-value=0.11 Score=33.37 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=47.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC--CCCCEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFG 102 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~--~~~PvLG 102 (163)
++|+|+|........+.+.|+..|+.+............+....+|.+|+--... ..+...+.+.+++.. ...|++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhccccCCCCEEE
Confidence 5799998765567778889999999876553210011222334799888743211 112223455566543 6789887
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 81 ~~~ 83 (119)
T 2j48_A 81 FLG 83 (119)
T ss_dssp EES
T ss_pred EeC
Confidence 653
No 95
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=94.07 E-value=0.12 Score=35.57 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
+++|+|||........+.+.|...|+.+............+....+|.+|+--.... .+...+.+.+++.....|++-+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEE
Confidence 468999997655677788899989998765432100011122346898887432111 1222345566665567999988
Q ss_pred eh
Q 031223 104 CM 105 (163)
Q Consensus 104 C~ 105 (163)
.-
T Consensus 82 s~ 83 (155)
T 1qkk_A 82 TG 83 (155)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 96
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.04 E-value=0.14 Score=34.56 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=47.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
+..+|+|+|........+.+.|...|+.+..........+.+....+|.+|+-=. .+... -.+.+.+++.....|++
T Consensus 3 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii 80 (137)
T 3cfy_A 3 LRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVI 80 (137)
T ss_dssp CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEE
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3458999998777777788888888887654422100122233347998887321 11112 23455566544568887
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 81 ~ls 83 (137)
T 3cfy_A 81 IAT 83 (137)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 97
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=94.04 E-value=0.18 Score=34.06 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
.+++|+|||....+...+.+.|.+.|+.+............+.. ..+|.||+--....-.+.-.+.+.+++. .+.|++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEE
Confidence 34689999976556777889999999887655321111223333 4789888732210001122345555654 568988
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 83 ~ls 85 (140)
T 3h5i_A 83 FLT 85 (140)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 98
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=93.92 E-value=0.025 Score=38.27 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=46.1
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCCCCCCC--CC-hhHHHHHH
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DS-GISLQTVL 92 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG~~~~~--d~-~~~~~~i~ 92 (163)
+++..++|+|+|........+.+.|+..|+.+..... .++. ....+|.||+-=. .+. .. -.+.+.++
T Consensus 2 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~ 75 (136)
T 3kto_A 2 SLNHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFAS----AESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLV 75 (136)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHTTSSSEEEEESS----HHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC----HHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHH
Confidence 3455678999997655666788889888988765432 2222 2236887777211 111 11 13455555
Q ss_pred HhCCCCCEEEEeh
Q 031223 93 ELGPTVPLFGVCM 105 (163)
Q Consensus 93 ~~~~~~PvLGIC~ 105 (163)
+.....|++-+.-
T Consensus 76 ~~~~~~~ii~~s~ 88 (136)
T 3kto_A 76 KRGFHLPTIVMAS 88 (136)
T ss_dssp HTTCCCCEEEEES
T ss_pred hCCCCCCEEEEEc
Confidence 5456789987764
No 99
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=93.90 E-value=0.079 Score=35.77 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=49.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCC-C-CChhHHHHHHH--hCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-Q-DSGISLQTVLE--LGP 96 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~-~-d~~~~~~~i~~--~~~ 96 (163)
+.++|+|||........+.+.|++ .|+++..........+.+.. ..+|.||+-=. .+ . +.-.+.+.+++ ...
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccC
Confidence 457899999765566778888988 89987755321001122334 57998887221 11 1 11134556666 456
Q ss_pred CCCEEEEeh
Q 031223 97 TVPLFGVCM 105 (163)
Q Consensus 97 ~~PvLGIC~ 105 (163)
..|++-+.-
T Consensus 81 ~~~ii~ls~ 89 (140)
T 3lua_A 81 NTPVIIATK 89 (140)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEeC
Confidence 799998874
No 100
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=93.89 E-value=0.04 Score=36.79 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=33.8
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
++..+++|+|||........+.+.|++.|+.+..........+.+....+|.||+
T Consensus 2 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 2 SLKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred CCCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 4456689999997655667788899999998765532111122233457998887
No 101
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.88 E-value=0.23 Score=32.93 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG 102 (163)
++|+|+|....+...+.+.|.+.|+.+. ...........+....||.||+--.. +. +.-.+.+.+++...+.|++-
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCCCCeEEE
Confidence 5799999765567778889999997665 33322112333444579988873221 11 22234556666556789887
Q ss_pred EehHH
Q 031223 103 VCMGL 107 (163)
Q Consensus 103 IC~G~ 107 (163)
++--.
T Consensus 80 ~s~~~ 84 (134)
T 3f6c_A 80 VSAKN 84 (134)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 77543
No 102
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=93.88 E-value=0.078 Score=38.47 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=50.6
Q ss_pred CCCCeEEEE---------ECCCChHHHHHHHHHHcCCEEE---EEeCCCCCH-HHHhc---cCCCEEEeCCCCCCCCCCh
Q 031223 22 NNKNPIIVI---------DNYDSFTYNLCQYMGELGYHFE---VYRNDELTV-EELKR---KNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 22 ~~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~---v~~~~~~~~-~~~~~---~~~dgvvl~GG~~~~~d~~ 85 (163)
+..+++.|| +-.|++...+..+|++.|+++. +++ |+... +.+.. .++|.||.+||.+ +.+.+
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~-Dd~~i~~al~~a~~~~~DlVittGG~s-~g~~D 82 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA-DGSPVGEALRKAIDDDVDVILTSGGTG-IAPTD 82 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC-SSHHHHHHHHHHHHTTCSEEEEESCCS-SSTTC
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC-CHHHHHHHHHHHHhCCCCEEEECCCCC-CCCCc
Confidence 445788888 2346677789999999998765 343 32111 12221 2799999999954 44444
Q ss_pred hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCe
Q 031223 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGK 117 (163)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~ 117 (163)
...+.++++ ++..| |+..+.+..+-+
T Consensus 83 ~t~eal~~~~~~~lp------G~~~~~~~~~~~ 109 (164)
T 3pzy_A 83 STPDQTVAVVDYLIP------GLAEAIRRSGLP 109 (164)
T ss_dssp CHHHHHHTTCSEECH------HHHHHHHHTTTT
T ss_pred cHHHHHHHHhcccCc------cHHHHHHhhccC
Confidence 455666664 54444 544444444433
No 103
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=93.79 E-value=0.14 Score=34.26 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=48.3
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEE-EeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v-~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
...++|+|||........+.+.|+..|+.+.. ..........+....+|.+|+--....-.+.-.+.+.+++. ...|+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i 85 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPI 85 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence 34578999987655667788889888998763 43211112222334799888832210001122345555555 67999
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-++-
T Consensus 86 i~ls~ 90 (140)
T 3cg0_A 86 IFITS 90 (140)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88764
No 104
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=93.76 E-value=0.18 Score=33.59 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=47.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL 101 (163)
|+.+|+|+|....+...+...|...|+.+............+....+|.+++--. .+. +.-.+.+.+++.....|++
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii 79 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPIL 79 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEE
Confidence 4568999997655666788888888988654432100112222347898887322 111 1123455566544568988
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 80 ~~s~ 83 (136)
T 1mvo_A 80 MLTA 83 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7764
No 105
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=93.67 E-value=1.2 Score=34.96 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=48.1
Q ss_pred CCCeEEEEEC--CCChH---HHHHHHHHHcC-CEEEEEeCCC-----CCH-HHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 23 NKNPIIVIDN--YDSFT---YNLCQYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 23 ~~~~Ilvid~--~~~~~---~~~~~~l~~~G-~~~~v~~~~~-----~~~-~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
...|||||.- +..+. ..+.+.|++.| +++++..... ..+ +.+ .+||.||+.-. +... .+...+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~~-~~~l-~~~~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDYN-GDSW-PEETNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECCC-SSCC-CHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeCC-CCcC-CHHHHHH
Confidence 3578999943 22232 35777888888 8888875310 111 122 37999997442 2222 2334445
Q ss_pred HHH-hCCCCCEEEEehHH
Q 031223 91 VLE-LGPTVPLFGVCMGL 107 (163)
Q Consensus 91 i~~-~~~~~PvLGIC~G~ 107 (163)
+.+ +.++.+++|+..+.
T Consensus 79 l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp HHHHHHTTCEEEEEGGGG
T ss_pred HHHHHHcCCCEEEEeccc
Confidence 555 57899999998654
No 106
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=93.57 E-value=0.15 Score=35.47 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=48.1
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~ 97 (163)
+.++||+|||-.......+.+.|++.|+.......+.. ..+.+....||.|++ -= ..|.-.+ ++.+.||+. .++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill-D~-~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT-DW-NMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhCCCCCC
Confidence 34578999987555666788899999986433322211 122233347998886 21 1232222 456667763 367
Q ss_pred CCEEEEe
Q 031223 98 VPLFGVC 104 (163)
Q Consensus 98 ~PvLGIC 104 (163)
+||+-+-
T Consensus 88 ipvI~lT 94 (134)
T 3to5_A 88 LPVLMIT 94 (134)
T ss_dssp CCEEEEE
T ss_pred CeEEEEE
Confidence 9998775
No 107
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=93.48 E-value=0.28 Score=32.33 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (163)
..+|+|+|........+...|+..|+++..........+.+....||.+++-=. .+...+ .+.+.+++. ..+.|+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCE
Confidence 358999987555666788888889998765432111122333457998887221 122222 344555543 257899
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 80 i~~s~ 84 (122)
T 3gl9_A 80 IVLTA 84 (122)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 88773
No 108
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.47 E-value=0.14 Score=34.62 Aligned_cols=81 Identities=9% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHH--hCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLE--LGPT 97 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~--~~~~ 97 (163)
..++|+|||........+.+.|++.|....+...... ..+.+....+|.||+--. .+. +.-.+.+.+++ ...+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence 3468999997655667788899999987544433211 122233457998887322 111 11234555665 3467
Q ss_pred CCEEEEeh
Q 031223 98 VPLFGVCM 105 (163)
Q Consensus 98 ~PvLGIC~ 105 (163)
.|++-+.-
T Consensus 82 ~pii~~s~ 89 (144)
T 3kht_A 82 TPIVILTD 89 (144)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 89998874
No 109
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=93.32 E-value=0.22 Score=33.21 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=46.6
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
.++|+|+|....+...+...|+..|+.+............+....+|.+|+-=. .+... -.+.+.+++.....|++-
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEE
Confidence 468999997655666788888888988764432101122233347898887321 11212 234555665556789887
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 81 ~s 82 (132)
T 3crn_A 81 VT 82 (132)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 110
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=93.31 E-value=0.12 Score=34.65 Aligned_cols=82 Identities=7% Similarity=-0.063 Sum_probs=48.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
..++|+|||........+.+.|++.|+.+..........+.+....+|.||+--... ..+.-.+.+.+++.....|++-
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMP-KLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHTTCCCEEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCcEEE
Confidence 346899999865566778888888887776654211112223334799888843211 1112234555666556788887
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 85 ~s~ 87 (137)
T 3hdg_A 85 ISA 87 (137)
T ss_dssp CCC
T ss_pred Eec
Confidence 764
No 111
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=93.26 E-value=0.35 Score=31.68 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=45.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG 102 (163)
..+|+|+|........+.+.|+..|+++..........+.+....||.+++-=. .+...+ .+.+.+++ ....|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~-~~~~~ii~ 78 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRK-KYDMPIIM 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHT-TCCSCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence 458999987555666788888889998765432101122233457998887221 111111 23444444 24689887
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 79 ~t~ 81 (120)
T 3f6p_A 79 LTA 81 (120)
T ss_dssp EEE
T ss_pred EEC
Confidence 763
No 112
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=93.25 E-value=0.32 Score=31.98 Aligned_cols=81 Identities=10% Similarity=0.116 Sum_probs=46.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL 101 (163)
.+.+|+|+|........+...|...|+.+............+....+|.+++-=. .+. +.-.+.+.+++.....|++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999998655666788888888987765432100112223346887776211 111 1123455566655678988
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 80 ~~s~ 83 (126)
T 1dbw_A 80 VITG 83 (126)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7753
No 113
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=93.22 E-value=0.18 Score=34.55 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=46.7
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccC-CCEEEeCCCCCCCCCChhHHHHHHHhCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~-~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~P 99 (163)
|++.++|+|||........+.+.|+. |+.+..........+.+...+ ||.||+--... ..+.-.+.+.+++.....|
T Consensus 1 M~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ 78 (151)
T 3kcn_A 1 MSLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMP-GMEGTEVIQKARLISPNSV 78 (151)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCS-SSCHHHHHHHHHHHCSSCE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCcE
Confidence 34567899999765556667777765 887765532111122232334 59888732211 1122234556666556789
Q ss_pred EEEEehH
Q 031223 100 LFGVCMG 106 (163)
Q Consensus 100 vLGIC~G 106 (163)
++-+.-.
T Consensus 79 ii~~s~~ 85 (151)
T 3kcn_A 79 YLMLTGN 85 (151)
T ss_dssp EEEEECG
T ss_pred EEEEECC
Confidence 8877643
No 114
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=93.06 E-value=0.17 Score=33.92 Aligned_cols=84 Identities=10% Similarity=-0.003 Sum_probs=46.5
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCC
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTV 98 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~ 98 (163)
..+...+|+|+|....+...+.+.|...|+.+............+.. ..+|.+|+--... ..+.-.+.+.+++.....
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~-~~~g~~~~~~l~~~~~~~ 89 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLV-DLSIFSLLDIVKEQTKQP 89 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCT-TSCHHHHHHHHTTSSSCC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCC
Confidence 34456789999976556777888898889877654321011222334 4799888732211 011112334444433568
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|++-+.
T Consensus 90 ~ii~ls 95 (138)
T 2b4a_A 90 SVLILT 95 (138)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 888776
No 115
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=93.05 E-value=0.35 Score=35.40 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=52.2
Q ss_pred CeEEEEE---------CCCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVID---------NYDSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid---------~~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~ 87 (163)
+++.||- -.+++...+.++|++.|+++..+. .| +.+.+. . .++|.||.+||.+ +...+..
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~DlVittGG~g-~~~~D~T 80 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEVSDLVVSSGGLG-PTFDDMT 80 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEEESCCS-SSTTCCH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCEEEEcCCCc-CCcccch
Confidence 5677772 234566679999999999876432 23 223321 1 2599999999955 4444444
Q ss_pred HHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223 88 LQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 88 ~~~i~~-~~~~~PvLGIC~G~QlLa~a~G 115 (163)
.+.+.+ ++ +++..-=--.+.|-..|+
T Consensus 81 ~ea~a~~~~--~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 81 VEGFAKCIG--QDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp HHHHHHHHT--CCCEECHHHHHHHHHHHC
T ss_pred HHHHHHHcC--CCeeeCHHHHHHHHHHHc
Confidence 555555 45 455554455666666666
No 116
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=93.02 E-value=0.17 Score=36.22 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=48.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~Pv 100 (163)
+..++|+|||........+.+.|...|+.+..........+.+....||.||+-=. .+. +.-++.+.+++.....|+
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~i 82 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQPDARI 82 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCTTCEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCCCCCE
Confidence 45578999997655666788889989988755432111122333457998887211 111 112345566665567898
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 83 i~lt~ 87 (184)
T 3rqi_A 83 LVLTG 87 (184)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 87653
No 117
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=93.00 E-value=0.18 Score=39.96 Aligned_cols=76 Identities=16% Similarity=0.289 Sum_probs=44.5
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCCC-----------------HHH-----HhccCCCEEEeCCC
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELT-----------------VEE-----LKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~~-----------------~~~-----~~~~~~dgvvl~GG 77 (163)
++|+||-|..+ ....+.++|++.|+++.+....... ... ....++|.||..||
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG 84 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 84 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence 46888866433 2445888999999988765432110 110 11236899999899
Q ss_pred CCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223 78 PGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 78 ~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G 106 (163)
-+ .+...++.+ ..++|++||=.|
T Consensus 85 DG------T~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 85 DG------TFLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp HH------HHHHHHHHHHHHTCCEEEEECS
T ss_pred CH------HHHHHHHHhccCCCCEEEEeCC
Confidence 43 345555553 346899999766
No 118
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=92.94 E-value=0.16 Score=33.98 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=47.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccC-CCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~-~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~Pv 100 (163)
...+|+|+|....+...+.+.|++.|+++............+.... +|.||+--.. ...+.-.+.+.+++. ....|+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcCCCCCCE
Confidence 3478999997655677788899999988766532110112222234 8888873221 111112344555554 366888
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 85 i~~s~ 89 (136)
T 3hdv_A 85 IVVSG 89 (136)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 88774
No 119
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=92.91 E-value=0.2 Score=36.26 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
+...+|+|+|........+...|...|+.+..........+.+....+|.+|+-=. .+... -++.+.+++...+.|+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~i 79 (208)
T 1yio_A 2 TAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPI 79 (208)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence 45678999997655667788888888988765432100011122346887776211 12212 2345566665567899
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 80 i~ls~ 84 (208)
T 1yio_A 80 VFITA 84 (208)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 88763
No 120
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.87 E-value=0.32 Score=32.17 Aligned_cols=81 Identities=10% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc-------cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~-------~~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
+++|+|+|........+.+.|+..|+ .+............+.. ..+|.+|+--... ..+.-.+.+.+++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP-KKDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS-SSCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCC-cccHHHHHHHHHcC
Confidence 46899999765567778899999988 55544321111222332 4699888843211 11222345556653
Q ss_pred C--CCCCEEEEeh
Q 031223 95 G--PTVPLFGVCM 105 (163)
Q Consensus 95 ~--~~~PvLGIC~ 105 (163)
. ...|++-+.-
T Consensus 81 ~~~~~~pii~ls~ 93 (140)
T 1k68_A 81 PTLKRIPVVVLST 93 (140)
T ss_dssp TTGGGSCEEEEES
T ss_pred cccccccEEEEec
Confidence 3 5789998864
No 121
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=92.77 E-value=0.28 Score=33.54 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=47.2
Q ss_pred CCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
.++|+|||....+...+.+.|.. .|+.+.....+.. ....+....+|.||+--... ..+.-.+.+.+++.....|++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii 83 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAARIL 83 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCCEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCeEE
Confidence 36899999765566678888887 6777652222210 12223334799888732211 112223456666655678998
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 84 ~ls~ 87 (153)
T 3cz5_A 84 IFTM 87 (153)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
No 122
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=92.77 E-value=0.25 Score=33.71 Aligned_cols=83 Identities=8% Similarity=0.025 Sum_probs=46.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
..++|+|||....+...+.+.|...|....+...... ..+.+....+|.||+--.. ...+.-.+.+.+++...+.|+
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~~i 97 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLETKV 97 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCSCEE
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeE
Confidence 3468999997655666788888887744433332211 1222334579988873221 111222345556665567898
Q ss_pred EEEehH
Q 031223 101 FGVCMG 106 (163)
Q Consensus 101 LGIC~G 106 (163)
+-+.-.
T Consensus 98 i~ls~~ 103 (150)
T 4e7p_A 98 VVVTTF 103 (150)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 887743
No 123
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=92.76 E-value=0.32 Score=35.13 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred CCCeEEEE---------ECCCChHHHHHHH----HHHcCCEEEEEe--CCCCCHHHH----hc--c-CCCEEEeCCCCCC
Q 031223 23 NKNPIIVI---------DNYDSFTYNLCQY----MGELGYHFEVYR--NDELTVEEL----KR--K-NPRGVLISPGPGA 80 (163)
Q Consensus 23 ~~~~Ilvi---------d~~~~~~~~~~~~----l~~~G~~~~v~~--~~~~~~~~~----~~--~-~~dgvvl~GG~~~ 80 (163)
|.+++.|| +-.+++...+.++ |++.|+++..+. +|+ .+.+ .. . ++|.||.+||.+
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~g- 80 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGTG- 80 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCCS-
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCC-
Confidence 44677777 3346677789999 999998765332 232 2332 11 2 499999999954
Q ss_pred CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223 81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G 115 (163)
+...+...+.+.++ +...| |++.+.+..+
T Consensus 81 ~~~~D~t~ea~~~~~~~~l~------g~~~~~~~~~ 110 (167)
T 2g2c_A 81 IRAKNQTPEATASFIHTRCE------GLEQQILIHG 110 (167)
T ss_dssp SSTTCCHHHHHHTTCSEECH------HHHHHHHHHC
T ss_pred CCCCcChHHHHHHHhCCcCc------cHHHHHHHhc
Confidence 34333345556553 43333 5555544444
No 124
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=92.64 E-value=0.2 Score=34.25 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=44.8
Q ss_pred CCeEEEEECCCChHHHHHHHHHHc-CCE-EEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~-~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv 100 (163)
.++|+|||........+.+.|++. |+. +............+.. ..+|.+|+--.. ...+.-.+.+.+++.....|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhCCCCeE
Confidence 468999997655667788888887 773 4333221011222334 569988873321 111222345556665567899
Q ss_pred EEEehH
Q 031223 101 FGVCMG 106 (163)
Q Consensus 101 LGIC~G 106 (163)
+-++--
T Consensus 82 i~ls~~ 87 (154)
T 2qsj_A 82 ALISGE 87 (154)
T ss_dssp EEC---
T ss_pred EEEeCC
Confidence 887644
No 125
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=92.63 E-value=0.36 Score=32.41 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVP 99 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~P 99 (163)
...+|+|+|........+.+.|+..|+.+..........+.+....+|.|++-=. .+... -.+.+.+++. ....|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCcc
Confidence 3468999997655666788889889988765432111122233357998887211 12222 2345566652 45789
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++-+.-
T Consensus 81 ii~~t~ 86 (136)
T 3t6k_A 81 ILMLTA 86 (136)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 987764
No 126
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=92.61 E-value=0.37 Score=37.61 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=47.7
Q ss_pred CeEEEEECCC-----ChHHHHHHHHHHcCCEEEEEeCCC----------CCHHHHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 25 ~~Ilvid~~~-----~~~~~~~~~l~~~G~~~~v~~~~~----------~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
++|++|-|.. .....+.++|++.|+++.+..... ...+.. ..++|.||..||-+ .+.+
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~GGDG------T~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEI-GQQADLAVVVGGDG------NMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHH-HHHCSEEEECSCHH------HHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhc-ccCCCEEEEEcCcH------HHHH
Confidence 4688885532 134558889999999887653210 011122 23689999999943 3566
Q ss_pred HHHHh-CCCCCEEEEehH
Q 031223 90 TVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 90 ~i~~~-~~~~PvLGIC~G 106 (163)
.++.+ ..++|+|||=.|
T Consensus 79 a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 79 AARTLARYDINVIGINRG 96 (292)
T ss_dssp HHHHHTTSSCEEEEBCSS
T ss_pred HHHHhhcCCCCEEEEECC
Confidence 66665 457999999655
No 127
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=92.59 E-value=0.48 Score=30.62 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=46.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
++|+|+|........+.+.|...|+.+............+....+|.+++--. .+... -.+.+.+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999987555666788888888987665432111122233347898887322 12212 2344555554456898877
Q ss_pred eh
Q 031223 104 CM 105 (163)
Q Consensus 104 C~ 105 (163)
.-
T Consensus 79 s~ 80 (121)
T 2pl1_A 79 TA 80 (121)
T ss_dssp ES
T ss_pred ec
Confidence 53
No 128
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.56 E-value=0.32 Score=35.52 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=47.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
.++|+|+|........+.+.|...|+.+............+....||.+|+--.. +... -.+.+.+++.....|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l--~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCCCCEEE
Confidence 4689999976556667888888889887644321001122233479988873221 1112 234555665456789988
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 80 ls~ 82 (225)
T 1kgs_A 80 LTA 82 (225)
T ss_dssp EES
T ss_pred EeC
Confidence 864
No 129
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=92.49 E-value=0.24 Score=33.87 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=46.6
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHh---------ccCCCEEEeCCCCCCCCCC-hhHHH
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDS-GISLQ 89 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~---------~~~~dgvvl~GG~~~~~d~-~~~~~ 89 (163)
+++++|+|||........+.+.|++.|+ .+..........+.+. ...+|.||+-=. .+... -.+.+
T Consensus 2 ~~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~ 79 (152)
T 3heb_A 2 SLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILK 79 (152)
T ss_dssp ---CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHH
Confidence 4567899999765566778889999998 4544432111122221 246888887221 11112 23456
Q ss_pred HHHH--hCCCCCEEEEeh
Q 031223 90 TVLE--LGPTVPLFGVCM 105 (163)
Q Consensus 90 ~i~~--~~~~~PvLGIC~ 105 (163)
.+++ ...+.|++-+.-
T Consensus 80 ~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 80 LVKENPHTRRSPVVILTT 97 (152)
T ss_dssp HHHHSTTTTTSCEEEEES
T ss_pred HHHhcccccCCCEEEEec
Confidence 6666 346789987764
No 130
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=92.49 E-value=0.52 Score=34.86 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=44.1
Q ss_pred CCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h---ccCCCEEEeCCCCCCCCCC
Q 031223 23 NKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPGAPQDS 84 (163)
Q Consensus 23 ~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~---~~~~dgvvl~GG~~~~~d~ 84 (163)
..+|+.|| + .|++...+..+|++.|+++..+. +|+ .+.+ . ..++|.||.+||.+ +.+.
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~DlVIttGGts-~g~~ 104 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIGGVDLVVSVGGTG-VTPR 104 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEESCCS-SSTT
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCC-CCCc
Confidence 44678888 4 57777889999999998876432 232 2222 1 13799999999954 4444
Q ss_pred hhHHHHHHHh
Q 031223 85 GISLQTVLEL 94 (163)
Q Consensus 85 ~~~~~~i~~~ 94 (163)
+...+.++++
T Consensus 105 D~t~eal~~l 114 (185)
T 3rfq_A 105 DVTPESTREI 114 (185)
T ss_dssp CCHHHHHHTT
T ss_pred ccHHHHHHHH
Confidence 4445555553
No 131
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=92.47 E-value=0.32 Score=36.52 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~P 99 (163)
.+..++|+|||........+...|+..|+++..........+.+....||.||+-=. .+... -++.+.+++.....|
T Consensus 20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ 97 (250)
T 3r0j_A 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGIDAP 97 (250)
T ss_dssp CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCC
Confidence 344578999997655666788889889988765432101122233347998887221 12212 234555666555789
Q ss_pred EEEEeh
Q 031223 100 LFGVCM 105 (163)
Q Consensus 100 vLGIC~ 105 (163)
++-+.-
T Consensus 98 ii~lt~ 103 (250)
T 3r0j_A 98 ALFLTA 103 (250)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 988765
No 132
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=92.42 E-value=0.5 Score=30.35 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=46.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLGI 103 (163)
++|+|+|....+...+.+.|...|+.+..........+.+....+|.+++-=. .+. +.-.+.+.+++.....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence 37999997655666788889888988765432111122233347898887322 111 222345566665566888776
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 80 s 80 (116)
T 3a10_A 80 T 80 (116)
T ss_dssp E
T ss_pred E
Confidence 5
No 133
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=92.41 E-value=0.27 Score=31.92 Aligned_cols=80 Identities=14% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-CCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL 101 (163)
+++|+|+|........+.+.|+..|+++.....+. .....+....+|.+++-=.. +. +.-.+.+.+++.....|++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l--~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM--PEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC--GGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCCcHHHHHHHHHhhCCCCeEE
Confidence 46899999765566678888888898753222221 01222223478988873221 11 1123455566555678988
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 80 ~~s~ 83 (120)
T 1tmy_A 80 VCSA 83 (120)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7753
No 134
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=92.36 E-value=0.15 Score=34.28 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=46.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc------cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~------~~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
..++|+|||........+.+.|++.|. .+............+.. ..+|.||+--.... .+.-.+.+.+++.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPK-MNGIEFLKELRDD 84 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHHHHHHHHTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHHHHHHHHHcC
Confidence 447899999765567778889998887 66555321111222332 46898887322110 1111234444443
Q ss_pred C--CCCCEEEEeh
Q 031223 95 G--PTVPLFGVCM 105 (163)
Q Consensus 95 ~--~~~PvLGIC~ 105 (163)
. ...|++-++-
T Consensus 85 ~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 85 SSFTDIEVFVLTA 97 (143)
T ss_dssp GGGTTCEEEEEES
T ss_pred ccccCCcEEEEeC
Confidence 2 5789888764
No 135
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.22 E-value=0.37 Score=35.38 Aligned_cols=80 Identities=11% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL 101 (163)
..++|+|+|....+...+.+.|...|+.+............+....||.+|+--. .+. +.-.+.+.+++...+.|++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 4478999997655667788889888987764432100122233347998887322 111 1123455566545678988
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 84 ~lt 86 (233)
T 1ys7_A 84 VLS 86 (233)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 136
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.09 E-value=0.28 Score=32.95 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=47.3
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc----------cCCCEEEeCCCCCCCCCChhHHH
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~----------~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
+++++|+|+|........+.+.|+..|+ .+..........+.+.. ..+|.+|+--... ..+.-.+.+
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~ 82 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP-GTDGREVLQ 82 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS-SSCHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCC-CCCHHHHHH
Confidence 4557899999765566778889999887 55544321111222332 4689888732211 111112344
Q ss_pred HHHHhC--CCCCEEEEeh
Q 031223 90 TVLELG--PTVPLFGVCM 105 (163)
Q Consensus 90 ~i~~~~--~~~PvLGIC~ 105 (163)
.+++.. ...|++-+.-
T Consensus 83 ~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp HHTTSTTGGGSCEEEEES
T ss_pred HHHhCcccCCCeEEEEeC
Confidence 444432 5689988764
No 137
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=92.08 E-value=0.47 Score=35.94 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=49.8
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
.+++|+|+|....+...+.+.|+..|+.+..........+.+....+|.|++-=. ....+.-.+.+.+++.....|++.
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~-mp~~~G~~l~~~ir~~~~~~piI~ 206 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN-MPNMDGYRLTQRIRQLGLTLPVIG 206 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES-SCSSCCHHHHHHHHHHHCCSCEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCCCcEEE
Confidence 3478999997655666788889889998765543211122333447998886211 101122245566666545799998
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 207 lt~ 209 (254)
T 2ayx_A 207 VTA 209 (254)
T ss_dssp EES
T ss_pred EEC
Confidence 864
No 138
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.05 E-value=0.027 Score=40.66 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred CCeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCCCCHHH---------------HhccCCCEEEeCCCCCCCC---
Q 031223 24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDELTVEE---------------LKRKNPRGVLISPGPGAPQ--- 82 (163)
Q Consensus 24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~---------------~~~~~~dgvvl~GG~~~~~--- 82 (163)
..+|+.+-.-+- |...+...+|+ -+...+|..+ .++ ....++|.|||.||-..|.
T Consensus 26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d--~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v 101 (157)
T 2r47_A 26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTD--FSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGS 101 (157)
T ss_dssp CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTC--GGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSC
T ss_pred CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCC--hhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCC
Confidence 578999976543 34445556666 3555566421 111 1114789999999966654
Q ss_pred CChhHHHHHHHh-CCCCCEEEEeh
Q 031223 83 DSGISLQTVLEL-GPTVPLFGVCM 105 (163)
Q Consensus 83 d~~~~~~~i~~~-~~~~PvLGIC~ 105 (163)
+.++..++|.++ ..+..+.|||+
T Consensus 102 ~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 102 DIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHhhcCCCCEEEEEh
Confidence 445677778875 44567999996
No 139
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=91.73 E-value=0.58 Score=30.36 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=44.6
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG 102 (163)
+.+|+|+|........+...|...|+.+..........+.+....+|.+++--. .+. +.-.+.+.+++. ...|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence 468999997655566778888888987654432100112223347898887322 111 212344555554 5688887
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 80 ~s 81 (123)
T 1xhf_A 80 LT 81 (123)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 140
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=91.54 E-value=1.2 Score=35.43 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=53.4
Q ss_pred HhhHHhhhcCCCCCeEEEEECCCCh-------HHHHHHHHHHcCCEEEEEeCCCC-CHHH----HhccCCCEEEeCCCCC
Q 031223 12 SLYLDDKKSKNNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPG 79 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~Ilvid~~~~~-------~~~~~~~l~~~G~~~~v~~~~~~-~~~~----~~~~~~dgvvl~GG~~ 79 (163)
++++-+...|++ ++++||-|-.+- ...+.++|++.|+++.+...... ...+ ....++|.||+.||-+
T Consensus 13 ~~~~~~~~~m~m-~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG 91 (337)
T 2qv7_A 13 SGLVPRGSHMMR-KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG 91 (337)
T ss_dssp ------CCCSCC-EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH
T ss_pred cCcccccccccc-ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch
Confidence 455656555553 457777553221 23477888889998888764321 1212 2224789999999943
Q ss_pred CCCCChhHHHHHHHh---CCCCCEEEEehHHH-HHHHHhC
Q 031223 80 APQDSGISLQTVLEL---GPTVPLFGVCMGLQ-CIGEAFG 115 (163)
Q Consensus 80 ~~~d~~~~~~~i~~~---~~~~PvLGIC~G~Q-lLa~a~G 115 (163)
.+.+.++.+ ..+.|+.+|=.|-- .+|+.+|
T Consensus 92 ------Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 92 ------TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp ------HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred ------HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 344445544 45678887765532 3444444
No 141
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=91.39 E-value=0.45 Score=30.91 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
..+|+|+|....+...+.+.|...|+.+............+....+|.+++-=. .+... -.+.+.+++ ....|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~~~~ii~ 78 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL 78 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cCCCCEEE
Confidence 357999987655667788888888987765432100111222346898887221 11112 133445555 45678876
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 79 ~s 80 (122)
T 1zgz_A 79 VT 80 (122)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 142
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=91.09 E-value=0.84 Score=33.79 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
.++|+|+|........+...|...|+.+..........+.+....+|.+|+-=.. +... -.+.+.+++. ...|++-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l--~~~~g~~~~~~lr~~-~~~~ii~ 81 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGIDVCRVLRAD-SGVPIVM 81 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHTT-CCCCEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCCCHHHHHHHHHhC-CCCcEEE
Confidence 4689999976556667888898889987655322111222333479988873221 1111 1234445543 3689887
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 82 lt~ 84 (238)
T 2gwr_A 82 LTA 84 (238)
T ss_dssp EEE
T ss_pred EeC
Confidence 753
No 143
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=91.08 E-value=0.24 Score=33.53 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=48.6
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCCCHHHHh-c-cCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELK-R-KNPRGVLISPGPGAPQDS-GISLQTVLELGPT 97 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~~~~~~~-~-~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~ 97 (163)
..+.+|+|||....+...+.+.|.+.| +.+............+. . ..+|.||+--.. +... -.+.+.+++....
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~ 95 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA--LDTAELAAIEKLSRLHPG 95 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT--CCHHHHHHHHHHHHHCTT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC--CCccHHHHHHHHHHhCCC
Confidence 344789999976556777888999888 88776543210111222 2 579988873221 1111 1244555555567
Q ss_pred CCEEEEeh
Q 031223 98 VPLFGVCM 105 (163)
Q Consensus 98 ~PvLGIC~ 105 (163)
.|++-+.-
T Consensus 96 ~~ii~lt~ 103 (146)
T 4dad_A 96 LTCLLVTT 103 (146)
T ss_dssp CEEEEEES
T ss_pred CcEEEEeC
Confidence 89887764
No 144
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=90.94 E-value=0.75 Score=35.77 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=46.0
Q ss_pred CeEEEEECC--CChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223 25 NPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 25 ~~Ilvid~~--~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (163)
++||+|+-. ......+.++|++.|+++++++.++. +.+++. +||.||+.--..+.. .....+.|+++ .++-=
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d~~~~~l-~~~~~~~L~~yV~~GGg 81 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSDYPAERM-TAQAIDQLVTMVKAGCG 81 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEESCCGGGB-CHHHHHHHHHHHHTTCE
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcCCccccC-CHHHHHHHHHHHHhCCe
Confidence 579999632 12355688899999999999986543 235554 899999953221111 12334555553 44555
Q ss_pred EEEE
Q 031223 100 LFGV 103 (163)
Q Consensus 100 vLGI 103 (163)
++.+
T Consensus 82 Li~~ 85 (259)
T 3rht_A 82 LVML 85 (259)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5555
No 145
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=90.86 E-value=0.43 Score=37.10 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=42.3
Q ss_pred CeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-C--CC
Q 031223 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT 97 (163)
Q Consensus 25 ~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~--~~ 97 (163)
|++++|-|.... ...+.++|++.|+++. ..++|.||..||-+ .+....+.+ . .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGGDG------T~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGGDG------TFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEESHH------HHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcCcH------HHHHHHHHHhhcCCC
Confidence 478888774322 2236667788888761 23689999999943 355666665 3 38
Q ss_pred CCEEEEehH
Q 031223 98 VPLFGVCMG 106 (163)
Q Consensus 98 ~PvLGIC~G 106 (163)
+|++||=.|
T Consensus 62 ~PilGIn~G 70 (272)
T 2i2c_A 62 IAFIGIHTG 70 (272)
T ss_dssp CEEEEEESS
T ss_pred CCEEEEeCC
Confidence 999999776
No 146
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=90.77 E-value=0.45 Score=35.40 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCeEEEEE---------CCCChHHHHHHHHHHcCCE--E---EEEeCCCCCH-HHHh---c-cCCCEEEeCCCCCCCCCC
Q 031223 24 KNPIIVID---------NYDSFTYNLCQYMGELGYH--F---EVYRNDELTV-EELK---R-KNPRGVLISPGPGAPQDS 84 (163)
Q Consensus 24 ~~~Ilvid---------~~~~~~~~~~~~l~~~G~~--~---~v~~~~~~~~-~~~~---~-~~~dgvvl~GG~~~~~d~ 84 (163)
.+++.||- -.|++...+.++|++.|++ + .+++.+.... +.+. . .++|.||.+||.+ +...
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg-~g~~ 81 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG-PARR 81 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS-SSTT
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC-CCCC
Confidence 45677772 2355667789999999876 2 2344321011 1121 1 1699999999965 3322
Q ss_pred hhHHHHHHH
Q 031223 85 GISLQTVLE 93 (163)
Q Consensus 85 ~~~~~~i~~ 93 (163)
+...+.+++
T Consensus 82 D~T~ea~~~ 90 (195)
T 1di6_A 82 DVTPDATLA 90 (195)
T ss_dssp CCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 223344444
No 147
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=90.54 E-value=2.3 Score=30.64 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=43.7
Q ss_pred CeEEEEECCCChHHHHHHH----HHHcCCEEEEEeCCCC--------------------CHHHHhccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQY----MGELGYHFEVYRNDEL--------------------TVEELKRKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~----l~~~G~~~~v~~~~~~--------------------~~~~~~~~~~dgvvl~GG~~~ 80 (163)
++|+||....+++..+.+. +++.|++++++...+. ..+++. ++|+||| |.|--
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gsP~y 81 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GSPTR 81 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EEECB
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-ECCcc
Confidence 5799986544566655554 4456899988865432 123333 6999998 55531
Q ss_pred CCC-ChhHHHHHHHh--------CCCCCEEEEe
Q 031223 81 PQD-SGISLQTVLEL--------GPTVPLFGVC 104 (163)
Q Consensus 81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC 104 (163)
... ...+..++.++ -+++|+.-++
T Consensus 82 ~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~ 114 (199)
T 2zki_A 82 YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFT 114 (199)
T ss_dssp TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEE
T ss_pred ccCccHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 111 22344444432 2568876554
No 148
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=90.53 E-value=1.4 Score=31.80 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCCCeEEEEECC--------------CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h----ccCCCEEEeCCC
Q 031223 22 NNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K----RKNPRGVLISPG 77 (163)
Q Consensus 22 ~~~~~Ilvid~~--------------~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~----~~~~dgvvl~GG 77 (163)
...++++||--+ |++...+.++|++.|+++.-+. .|+ .+.+ . ..++|.||.+||
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 345788888432 3445568899999999876432 232 2222 1 246899999999
Q ss_pred CCCCCCChhHHHHHHH
Q 031223 78 PGAPQDSGISLQTVLE 93 (163)
Q Consensus 78 ~~~~~d~~~~~~~i~~ 93 (163)
.+ +.+.+...+.+.+
T Consensus 91 ~g-~~~~D~t~ea~~~ 105 (178)
T 3iwt_A 91 TG-YSPTDITVETIRK 105 (178)
T ss_dssp CS-SSTTCCHHHHHGG
T ss_pred cc-cCCCCchHHHHHH
Confidence 65 3433334444444
No 149
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=90.44 E-value=2.3 Score=29.06 Aligned_cols=32 Identities=9% Similarity=0.258 Sum_probs=22.9
Q ss_pred CeEEEEE---CCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 25 NPIIVID---NYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid---~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
..|+||- ..+.+-+.+.+.|.+.|+++..+.+
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP 39 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGR 39 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESS
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECC
Confidence 4699993 3345677889999999986655544
No 150
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=90.39 E-value=1 Score=32.46 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCeEEEEEC-------CCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h--cc--CCCEEEeCCCCCCCCCChh
Q 031223 24 KNPIIVIDN-------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RK--NPRGVLISPGPGAPQDSGI 86 (163)
Q Consensus 24 ~~~Ilvid~-------~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~--~~--~~dgvvl~GG~~~~~d~~~ 86 (163)
.+++.||-- .+++...+.++|++.|+++..+. .|+ .+.+ . .. ++|.||.+||.+ +...+.
T Consensus 13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g-~g~~D~ 89 (169)
T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGTG-ITKRDV 89 (169)
T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCCS-SSTTCC
T ss_pred CCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC-CCCCCC
Confidence 467777733 23455668899999999765332 232 2332 1 12 699999999954 343334
Q ss_pred HHHHHHHh
Q 031223 87 SLQTVLEL 94 (163)
Q Consensus 87 ~~~~i~~~ 94 (163)
..+.+.++
T Consensus 90 t~ea~~~~ 97 (169)
T 1y5e_A 90 TIEAVSAL 97 (169)
T ss_dssp HHHHHHTT
T ss_pred cHHHHHHH
Confidence 45555553
No 151
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=90.25 E-value=0.82 Score=33.30 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=48.8
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhc-------------cCCCEEEeCCCCCCCCCC-hh
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDS-GI 86 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~-------------~~~dgvvl~GG~~~~~d~-~~ 86 (163)
..+.+|+|||....+...+.+.|+..|+ .+.........++.+.. ..||.||+-=. .+... -+
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~e 136 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYE 136 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHH
Confidence 3457899999765566678889999998 66555321111222222 26998887211 12222 23
Q ss_pred HHHHHHHh----CCCCCEEEEeh
Q 031223 87 SLQTVLEL----GPTVPLFGVCM 105 (163)
Q Consensus 87 ~~~~i~~~----~~~~PvLGIC~ 105 (163)
+.+.+++. ...+|++-+.-
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEES
T ss_pred HHHHHHhhhhhcCCCCcEEEEEC
Confidence 45566653 46789998875
No 152
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=90.21 E-value=0.33 Score=37.41 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCEEEEEeCC----C--CCHHHHhccCCCEEEeCCCCCCCCC-----------ChhHHHHHHHh-CCCCC
Q 031223 38 YNLCQYMGELGYHFEVYRND----E--LTVEELKRKNPRGVLISPGPGAPQD-----------SGISLQTVLEL-GPTVP 99 (163)
Q Consensus 38 ~~~~~~l~~~G~~~~v~~~~----~--~~~~~~~~~~~dgvvl~GG~~~~~d-----------~~~~~~~i~~~-~~~~P 99 (163)
..+.++|+..++++++++.. . .+.+++. +||.||+.+-+.+... .+...+.|+++ .++..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG 120 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence 45888999899999988421 1 1234444 8999999775432100 02345667774 56899
Q ss_pred EEEE
Q 031223 100 LFGV 103 (163)
Q Consensus 100 vLGI 103 (163)
+++|
T Consensus 121 ll~i 124 (256)
T 2gk3_A 121 LLMI 124 (256)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 153
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=90.09 E-value=0.82 Score=32.79 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----hc--c--CCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223 33 YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--K--NPRGVLISPGPGAPQDSGISLQTVLEL 94 (163)
Q Consensus 33 ~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~~--~--~~dgvvl~GG~~~~~d~~~~~~~i~~~ 94 (163)
.+++...+.++|++.|+++..+. .|+ .+.+ .. . ++|.||.+||.+ +...+...+.+.++
T Consensus 19 ~D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g-~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 19 QDTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGTG-LAPRDRTPEATREL 87 (164)
T ss_dssp CCCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS-SSTTCCHHHHHHTT
T ss_pred ccchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC-CCCCCChHHHHHHH
Confidence 46677789999999998765332 232 2222 11 2 699999999954 33333445556553
No 154
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=90.06 E-value=0.85 Score=29.75 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~ 98 (163)
..++|+|+|....+...+.+.|+..|+ .+............+....+|.+++-=. .+... -++.+.+++. ....
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence 446899998765566678888888887 4544432101122233346898877221 12212 2344555542 3468
Q ss_pred CEEEEeh
Q 031223 99 PLFGVCM 105 (163)
Q Consensus 99 PvLGIC~ 105 (163)
|++-+.-
T Consensus 81 ~ii~~s~ 87 (128)
T 1jbe_A 81 PVLMVTA 87 (128)
T ss_dssp CEEEEES
T ss_pred cEEEEec
Confidence 8887764
No 155
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=89.94 E-value=1 Score=30.04 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=46.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~PvL 101 (163)
.+|+|||....+...+.+.|...|+.+..........+.+....+|.+|+-=. .+... -++.+.+++. ....|++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCEE
Confidence 58999997655666788889888987764432100122233347898887221 11111 2345555553 3468998
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 82 ~ls~ 85 (138)
T 3c3m_A 82 MLTA 85 (138)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8763
No 156
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=89.81 E-value=0.45 Score=31.86 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=44.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC--CCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~--~~~PvL 101 (163)
.++|+|+|........+.+.|++. +.+..........+.+....+|.||+-=... ..+.-.+.+.+++.. .+.|++
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~ii 80 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDII-GENSPNLCLKLKRSKGLKNVPLI 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCcHHHHHHHHHcCcccCCCCEE
Confidence 468999997555566677888776 6655443210112223334799888732210 011123455666643 678998
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 81 ~~s~ 84 (140)
T 3n53_A 81 LLFS 84 (140)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
No 157
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=89.57 E-value=2.4 Score=30.48 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=46.1
Q ss_pred CeEEEEECC-CChHHHHHH----HHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC-ChhHHHHHHHh---
Q 031223 25 NPIIVIDNY-DSFTYNLCQ----YMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL--- 94 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~~~~----~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d-~~~~~~~i~~~--- 94 (163)
++|+||-.- .+++..+.+ .+++ .|+++++++..+.+.+++. ++|+||+ |.|--... ...+..++.++
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~~ 81 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGD 81 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGG
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhhh
Confidence 468888542 235555544 4555 6888988887644555665 6999998 55432122 23345555543
Q ss_pred ----CCCCCEEEEeh
Q 031223 95 ----GPTVPLFGVCM 105 (163)
Q Consensus 95 ----~~~~PvLGIC~ 105 (163)
-+++|+.-++-
T Consensus 82 ~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 82 LWGEIDGKIACAFSS 96 (188)
T ss_dssp TTTSCTTCEEEEEEE
T ss_pred hHHHhCCCeEEEEEE
Confidence 15778765554
No 158
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=89.42 E-value=0.69 Score=30.85 Aligned_cols=81 Identities=9% Similarity=0.118 Sum_probs=46.6
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc-----cCCCEEEeCCCCCCCC-CChhHHHHHHH-
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQ-DSGISLQTVLE- 93 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~-----~~~dgvvl~GG~~~~~-d~~~~~~~i~~- 93 (163)
..++|+|||........+...|+..|. .+..........+.+.. ..+|.||+-=. .+. +.-.+.+.+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHHh
Confidence 346899999765556678888888888 44433211011222333 56998887322 111 22235566666
Q ss_pred ---hCCCCCEEEEeh
Q 031223 94 ---LGPTVPLFGVCM 105 (163)
Q Consensus 94 ---~~~~~PvLGIC~ 105 (163)
.....|++-+.-
T Consensus 86 ~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSS 100 (146)
T ss_dssp CGGGTTTCEEEEECS
T ss_pred hhhccCCCeEEEEeC
Confidence 346788887764
No 159
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=89.39 E-value=2.2 Score=30.05 Aligned_cols=78 Identities=10% Similarity=0.108 Sum_probs=42.9
Q ss_pred CeEEEEEC-CCChHHHH----HHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh---
Q 031223 25 NPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL--- 94 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~----~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~--- 94 (163)
|+|+|+-. ..+++..+ .+.|.+.|+++++++....+.+++.. .++|+||| |.|--....+. ..++.++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p~-~~fl~~l~~~ 78 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEAV-ATALSTIFAA 78 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHHH-HHHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchhH-HHHHHHHHhh
Confidence 46777743 22355554 44556678999888865444555421 36999998 55432222221 2333332
Q ss_pred -CCCCCEEEEe
Q 031223 95 -GPTVPLFGVC 104 (163)
Q Consensus 95 -~~~~PvLGIC 104 (163)
-+++|+.-+|
T Consensus 79 ~l~gk~v~~fg 89 (161)
T 3hly_A 79 AHNKQAIGLFD 89 (161)
T ss_dssp CCTTSEEEEEC
T ss_pred hhCCCEEEEEE
Confidence 3677876654
No 160
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=89.36 E-value=2 Score=30.91 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCCCCeEEEEECC---CChHHHHHHHHHH---cCCEEEEEeCCCCC--------------HHHH-hc-cCCCEEEeCCCC
Q 031223 21 KNNKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRNDELT--------------VEEL-KR-KNPRGVLISPGP 78 (163)
Q Consensus 21 ~~~~~~Ilvid~~---~~~~~~~~~~l~~---~G~~~~v~~~~~~~--------------~~~~-~~-~~~dgvvl~GG~ 78 (163)
|...|+|++|... .+++..+.+++.+ .|.+++++...+.+ ..++ .. .++|+||| |.|
T Consensus 3 m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-~sP 81 (193)
T 1rtt_A 3 LSDDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF-ATP 81 (193)
T ss_dssp ----CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE-ECC
T ss_pred CCCCceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE-Ecc
Confidence 4445789999653 3678888887755 37788877643211 0111 11 26899999 554
Q ss_pred CCCC-CChhHHHHHHHh-------CCCCCEEEEeh
Q 031223 79 GAPQ-DSGISLQTVLEL-------GPTVPLFGVCM 105 (163)
Q Consensus 79 ~~~~-d~~~~~~~i~~~-------~~~~PvLGIC~ 105 (163)
-=-. -...+..++.++ -++||++-||-
T Consensus 82 ~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t 116 (193)
T 1rtt_A 82 EYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGA 116 (193)
T ss_dssp EETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred ccccCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence 2111 123344455443 25788876664
No 161
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=88.84 E-value=0.28 Score=32.43 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=51.1
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh---ccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK---RKNPRGVLISPGPGAPQDS-GISLQTVLELGPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~---~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~ 98 (163)
+.++|+|||........+.+.|+..+..+..... .++.. ...+|.||+--.. +... -.+.+.+++.....
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~ 75 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLMM--PDMDGIEVIRHLAEHKSPA 75 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECCT--TTTHHHHHHHHHHHTTCCC
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCCC--CCCCHHHHHHHHHhCCCCC
Confidence 4578999997655666788888887766655532 23321 1238888873221 1111 13455566655668
Q ss_pred CEEEEehHH-------HHHHHHhCCe
Q 031223 99 PLFGVCMGL-------QCIGEAFGGK 117 (163)
Q Consensus 99 PvLGIC~G~-------QlLa~a~Gg~ 117 (163)
|++-+.--. +.+..+++..
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 76 SLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred CEEEEEeccchhHHHHHHHHHHcCCC
Confidence 888765432 4555566543
No 162
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=88.79 E-value=2.5 Score=32.33 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=51.7
Q ss_pred CeEEEEECCCC--hHHHHHHHHHH---cCCEEEEEeCCCC-----CH-----------HHH---hccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDEL-----TV-----------EEL---KRKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~--~~~~~~~~l~~---~G~~~~v~~~~~~-----~~-----------~~~---~~~~~dgvvl~GG~~~ 80 (163)
|||+||+-..+ .+..+.+.++. -|.+++.+..... .. +.+ ...++|++|+.-...
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~- 80 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD- 80 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC-
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh-
Confidence 68999987665 46667766665 3566665543211 10 111 124799999955321
Q ss_pred CCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhCCeeee
Q 031223 81 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120 (163)
Q Consensus 81 ~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~ 120 (163)
. .+ +.+++. -++||+||.--.-..+...|+++.-
T Consensus 81 ---~-~l-~~lr~~-~~iPvigi~e~~~~~a~~~~~rigV 114 (245)
T 3qvl_A 81 ---P-GL-LAAREL-AQGPVIGIAEAAMHMATMVATRFSI 114 (245)
T ss_dssp ---T-TH-HHHHHH-CSSCEEEHHHHHHHHHHHHCSCEEE
T ss_pred ---h-HH-HHHHHH-cCCCEECccHHHHHHHHHcCCEEEE
Confidence 1 23 556663 2499999976554455556776654
No 163
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=88.66 E-value=3.9 Score=27.25 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=43.5
Q ss_pred eEEEEEC-CCChHHHHHHH----HHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCChh--HHHHHHHh---
Q 031223 26 PIIVIDN-YDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSGI--SLQTVLEL--- 94 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~~~~~----l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~~--~~~~i~~~--- 94 (163)
+|+|+-. ..+++..+++. +++.|+++++++..+.+.+++. ++|.||+ |.|- .-...+. +..++.++
T Consensus 1 ~i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~ 77 (137)
T 2fz5_A 1 MVEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPK 77 (137)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhh
Confidence 3566632 22356555554 4556889998886544455554 7999998 4442 1122334 55666553
Q ss_pred CCCCCEEEEe
Q 031223 95 GPTVPLFGVC 104 (163)
Q Consensus 95 ~~~~PvLGIC 104 (163)
-+++|+.-+|
T Consensus 78 l~~k~~~~~~ 87 (137)
T 2fz5_A 78 LKGKKVGLFG 87 (137)
T ss_dssp CSSCEEEEEE
T ss_pred cCCCEEEEEE
Confidence 2567766443
No 164
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=88.63 E-value=1.3 Score=32.04 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=38.9
Q ss_pred CCeEEEEECC-------CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h---cc-CCCEEEeCCCCCCCCCChh
Q 031223 24 KNPIIVIDNY-------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK-NPRGVLISPGPGAPQDSGI 86 (163)
Q Consensus 24 ~~~Ilvid~~-------~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~---~~-~~dgvvl~GG~~~~~d~~~ 86 (163)
.+++.||--+ +++...+.++|++.|+++..+. .|+ .+.+ . .. ++|.||.+||.+ +.+.+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG~g-~~~~D~ 86 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGTG-LTEGDQ 86 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCCS-SSTTCC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCCCC-CCCCCC
Confidence 4678888332 3345568899999999865332 232 2332 1 11 499999999965 333333
Q ss_pred HHHHHHH
Q 031223 87 SLQTVLE 93 (163)
Q Consensus 87 ~~~~i~~ 93 (163)
..+.+.+
T Consensus 87 t~ea~~~ 93 (172)
T 1mkz_A 87 APEALLP 93 (172)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 3344443
No 165
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=88.43 E-value=2 Score=32.90 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=34.9
Q ss_pred CCeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeC
Q 031223 24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (163)
Q Consensus 24 ~~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~ 75 (163)
+++|+||-.+.+. ...+.+++++.|+++.++..+......+...++|.++..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 5789999765442 235888999999999888765333333333468877753
No 166
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=88.42 E-value=0.97 Score=34.00 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=45.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
+..++|+|||....+...+...|...|+.+..........+.+....||.||+-=. .+... -++.+.+++ ....|+
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~i 111 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPI 111 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCE
Confidence 34468999997655666788888888886654432111122233357998887211 01111 123444444 356898
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 112 I~lt~ 116 (249)
T 3q9s_A 112 IVLTA 116 (249)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87764
No 167
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=88.08 E-value=1.3 Score=28.38 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=44.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
.+|+|+|........+...|...|+.+............+....+|.+++--. .+... -.+.+.+++. ...|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-SSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence 37999987655666788888888988764432100112222347998877322 12212 2344555553 56898877
Q ss_pred eh
Q 031223 104 CM 105 (163)
Q Consensus 104 C~ 105 (163)
.-
T Consensus 79 s~ 80 (120)
T 2a9o_A 79 SA 80 (120)
T ss_dssp ES
T ss_pred ec
Confidence 63
No 168
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=88.06 E-value=0.35 Score=32.50 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=44.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
..++|+|+|....+...+...|...|+.+..........+.+....+|.+++-=. .+... -.+.+.+++.. ..|++
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii 79 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIV 79 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEE
Confidence 4578999997655666788888888887654432101122233347898887211 11111 12344444433 68988
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 80 ~ls 82 (136)
T 2qzj_A 80 YMT 82 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 169
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=87.90 E-value=0.28 Score=33.39 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=44.1
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh----CC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL----GP 96 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~----~~ 96 (163)
...++|+|+|........+.+.|.+.|+.+..........+.+....||.|++-=. .+... -++.+.+++. ..
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCC
Confidence 34578999987554566688888888988765532100112233357998887211 11112 2345556542 24
Q ss_pred CCCEEEEeh
Q 031223 97 TVPLFGVCM 105 (163)
Q Consensus 97 ~~PvLGIC~ 105 (163)
..|++-+.-
T Consensus 90 ~~pii~~s~ 98 (143)
T 3m6m_D 90 YTPVVVLSA 98 (143)
T ss_dssp CCCEEEEES
T ss_pred CCeEEEEeC
Confidence 578887754
No 170
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=87.84 E-value=1.2 Score=32.46 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG 102 (163)
.++|+|+|....+...+.+.|...|+.+..........+.+....+|.+|+--.. +... -.+.+.+++. ...|++-
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l--~~~~g~~~~~~l~~~-~~~~ii~ 80 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTDVCKQLRAR-SSVPVIM 80 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHHH-CSCSEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCC--CCCCHHHHHHHHHcC-CCCCEEE
Confidence 4689999976556667888898889887644321001122223479988873221 1111 2344555553 5689987
Q ss_pred EehH
Q 031223 103 VCMG 106 (163)
Q Consensus 103 IC~G 106 (163)
+.--
T Consensus 81 lt~~ 84 (230)
T 2oqr_A 81 VTAR 84 (230)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7643
No 171
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=87.83 E-value=0.16 Score=35.00 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC-CCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND-ELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~Pv 100 (163)
.++||+|||-.......+.+.|++.|+++.-...+ ....+.+....||.+++ -= ..|...+ ++.+.+++ +++|+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll-Di-~mP~~~G~el~~~lr~--~~ipv 82 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII-DV-NLDGEPSYPVADILAE--RNVPF 82 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE-CS-SSSSCCSHHHHHHHHH--TCCSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE-ec-CCCCCCHHHHHHHHHc--CCCCE
Confidence 34789999887777888899999999876322111 00122233457998887 11 1122222 34455555 46887
Q ss_pred EEE
Q 031223 101 FGV 103 (163)
Q Consensus 101 LGI 103 (163)
+-+
T Consensus 83 I~l 85 (123)
T 2lpm_A 83 IFA 85 (123)
T ss_dssp CCB
T ss_pred EEE
Confidence 543
No 172
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=87.77 E-value=0.95 Score=30.69 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 98 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~ 98 (163)
...+.+|+|+|....+...+.+.|.+.|....+...... ..+.+....+|.||+--.. ...+.-.+.+.+++.....
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYELPT 90 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCSC
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 345578999997655677788899888865444222211 1122333479988883221 1112223455566655668
Q ss_pred CEEEEeh
Q 031223 99 PLFGVCM 105 (163)
Q Consensus 99 PvLGIC~ 105 (163)
|++-+.-
T Consensus 91 ~ii~~s~ 97 (152)
T 3eul_A 91 RVLLISA 97 (152)
T ss_dssp EEEEEES
T ss_pred eEEEEEc
Confidence 8887764
No 173
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=87.40 E-value=0.37 Score=31.52 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=44.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhC--CCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~--~~~Pv 100 (163)
.++|+|+|........+...|...|+.+..........+.+....+|.+++-=. .+... -.+.+.+++.. ...|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhCcccCCCCE
Confidence 358999987655666788888888987664432100011122236898876211 01111 12344555432 57898
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 80 i~~s~ 84 (127)
T 2jba_A 80 VMLTA 84 (127)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 87754
No 174
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=87.30 E-value=2 Score=31.20 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCeEEEEEC---------CCChHHHHHHHHH---HcCCEEEEEe--CCCCCHHHH----hc--c--CCCEEEeCCCCC
Q 031223 24 KNPIIVIDN---------YDSFTYNLCQYMG---ELGYHFEVYR--NDELTVEEL----KR--K--NPRGVLISPGPG 79 (163)
Q Consensus 24 ~~~Ilvid~---------~~~~~~~~~~~l~---~~G~~~~v~~--~~~~~~~~~----~~--~--~~dgvvl~GG~~ 79 (163)
.+++.||-- .+++...+.++|+ +.|+++ .+. .|+ .+.+ .. . ++|.||.+||.+
T Consensus 5 ~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 5 KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE--RDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 457777732 3445566888887 899877 332 232 2222 11 2 699999999965
No 175
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=86.95 E-value=1.6 Score=31.85 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=40.5
Q ss_pred CCCeEEEEECC--------------CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----hc--cC--CCEEEeCCCC
Q 031223 23 NKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KN--PRGVLISPGP 78 (163)
Q Consensus 23 ~~~~Ilvid~~--------------~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~~--~~--~dgvvl~GG~ 78 (163)
..+++.||--+ |++...+..+|++.|+++..+. +|+ .+.+ .. .+ +|.||.+||.
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 44678888433 3345568899999999876432 232 2332 11 23 9999999995
Q ss_pred CCCCCChhHHHHHHH
Q 031223 79 GAPQDSGISLQTVLE 93 (163)
Q Consensus 79 ~~~~d~~~~~~~i~~ 93 (163)
+ +.+.+...+.+.+
T Consensus 92 s-~g~~D~t~eal~~ 105 (178)
T 2pjk_A 92 G-YSPTDITVETIRK 105 (178)
T ss_dssp S-SSTTCCHHHHHGG
T ss_pred C-CCCCcchHHHHHH
Confidence 4 3333334445544
No 176
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=86.90 E-value=0.87 Score=33.16 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=45.6
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC 104 (163)
++|+|+|....+...+...|...|+.+..........+.+....||.+| .++. +.-.+.+.+++.....|++-+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~~----~g~~~~~~lr~~~~~~~ii~lt 75 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSDK----NALSFVSRIKEKHSSIVVLVSS 75 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECCT----THHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCCC----CHHHHHHHHHhCCCCCcEEEEE
Confidence 4799998765566678888888898876443210012223334799888 3321 1123455555552278998876
Q ss_pred hH
Q 031223 105 MG 106 (163)
Q Consensus 105 ~G 106 (163)
--
T Consensus 76 ~~ 77 (223)
T 2hqr_A 76 DN 77 (223)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 177
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=86.88 E-value=6.7 Score=27.97 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=42.8
Q ss_pred CeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCCC-------------------CCHHHHhccCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~~-------------------~~~~~~~~~~~dgvvl~GG~~~ 80 (163)
++|+||-.- .+++..+.+ .+++.|+++++++..+ ...+++. ++|+||| |.|--
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gsP~y 82 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPTR 82 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEECB
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-EcChh
Confidence 478888542 345655554 4455788998886543 1133343 7999998 55431
Q ss_pred CCC-ChhHHHHHHHh--------CCCCCEEEEe
Q 031223 81 PQD-SGISLQTVLEL--------GPTVPLFGVC 104 (163)
Q Consensus 81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC 104 (163)
... ...+..++.++ -+++|+.-+|
T Consensus 83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~ 115 (200)
T 2a5l_A 83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFT 115 (200)
T ss_dssp TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEE
T ss_pred ccCccHHHHHHHHHHHHHhhccccCCCEEEEEE
Confidence 111 23344444432 2567876544
No 178
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=86.69 E-value=4.9 Score=30.34 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+|.+|-. .+.|-.. +.+.+++.|+.+.++.....+.+ .+...++||||+.+.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 456777733 3344333 55667778999988432212221 122348999999775
No 179
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=86.68 E-value=2.6 Score=31.00 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=39.1
Q ss_pred CCeEEEEEC---------CCChHHHHHHHHHH---cCCEEEEEe--CCCCCHHHH----hc--c--CCCEEEeCCCCCCC
Q 031223 24 KNPIIVIDN---------YDSFTYNLCQYMGE---LGYHFEVYR--NDELTVEEL----KR--K--NPRGVLISPGPGAP 81 (163)
Q Consensus 24 ~~~Ilvid~---------~~~~~~~~~~~l~~---~G~~~~v~~--~~~~~~~~~----~~--~--~~dgvvl~GG~~~~ 81 (163)
.+++.||-- .+++...+..+|++ .|+++..+. +|+ .+.+ .. . ++|.||.+||.+ +
T Consensus 14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGtg-~ 90 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGTG-F 90 (189)
T ss_dssp CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS-S
T ss_pred CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCCC-C
Confidence 357777732 34455668889988 798765332 232 2222 11 2 699999999965 3
Q ss_pred CCChhHHHHHHH
Q 031223 82 QDSGISLQTVLE 93 (163)
Q Consensus 82 ~d~~~~~~~i~~ 93 (163)
.+.+...+.+++
T Consensus 91 g~~D~t~eal~~ 102 (189)
T 1jlj_A 91 APRDVTPEATKE 102 (189)
T ss_dssp STTCCHHHHHHH
T ss_pred CCcccHHHHHHH
Confidence 333334444444
No 180
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=86.44 E-value=1.9 Score=31.28 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=44.8
Q ss_pred CeEEEEECC---CChHHHHHHH-----HHHcCCEEEEEeCCCCCH-------------HHHh--ccCCCEEEeCCCCCCC
Q 031223 25 NPIIVIDNY---DSFTYNLCQY-----MGELGYHFEVYRNDELTV-------------EELK--RKNPRGVLISPGPGAP 81 (163)
Q Consensus 25 ~~Ilvid~~---~~~~~~~~~~-----l~~~G~~~~v~~~~~~~~-------------~~~~--~~~~dgvvl~GG~~~~ 81 (163)
++|++|... .+++..+.++ +.+.|.+++++...+.+. .++. -.++|+||+ |.|--.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~-~sP~y~ 81 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV-ATPIYK 81 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE-EEECBT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE-EeCccC
Confidence 478888654 3677766654 444588888887543222 1111 126899998 554211
Q ss_pred C-CChhHHHHHHHh----CCCCCEEEEeh
Q 031223 82 Q-DSGISLQTVLEL----GPTVPLFGVCM 105 (163)
Q Consensus 82 ~-d~~~~~~~i~~~----~~~~PvLGIC~ 105 (163)
. -...+..++..+ -+++|++-++-
T Consensus 82 ~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 82 ASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp TBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred CCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 1 123344455443 24788886665
No 181
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=86.41 E-value=1.3 Score=29.32 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
++|+|+|........+.+.|+..|....+...... ..+.+....+|.+|+-=. .+... -++.+.+++.....|++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHHCCCCcEE
Confidence 57999987655666677888877632223222111 112222347898887221 12212 23455566544568988
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 82 ~ls 84 (133)
T 3b2n_A 82 IVT 84 (133)
T ss_dssp EEE
T ss_pred EEe
Confidence 775
No 182
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=86.07 E-value=0.52 Score=30.48 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=44.8
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG 102 (163)
..+|+|+|........+.+.|...|+.+............+....+|.+++--.. +. +.-.+.+.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRM--PGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCS--SHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeec--CCCCHHHHHHHHHhhCCCCCEEE
Confidence 4679999987777778888898888876544321111222233468888772221 11 11123455555445677765
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+.
T Consensus 81 ~s 82 (124)
T 1dc7_A 81 MT 82 (124)
T ss_dssp BC
T ss_pred Ee
Confidence 53
No 183
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=85.96 E-value=8.6 Score=30.22 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=37.3
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC--HHHHh---------------c-cCCCEEEeCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------R-KNPRGVLISPGP 78 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~---------------~-~~~dgvvl~GG~ 78 (163)
.++|+||-.+.+-...+++.|.+.|+++.+.+....+ .+.+. . .++|.||+|+|-
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 3579999887666666888899999998888643211 11111 1 258999999885
No 184
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=85.87 E-value=1.9 Score=30.87 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
+..+|+|||........+.+.|...|+.+. ...........+....||.||+-=. .+... -.+.+.+++.. ..|+
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~~-~~pi 88 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKR-IAPI 88 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT-CSCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhcC-CCCE
Confidence 446899999765566678888888898876 3321100112222347998887221 12212 23445555532 3488
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 89 i~lt~ 93 (205)
T 1s8n_A 89 VVLTA 93 (205)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87753
No 185
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=85.82 E-value=1.1 Score=34.80 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=48.5
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhccCCCEEEe---CC-CCCCCCCChhHHHHHHHhCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLI---SP-GPGAPQDSGISLQTVLELGP 96 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~~~dgvvl---~G-G~~~~~d~~~~~~~i~~~~~ 96 (163)
....+|+++|........+...|+..|+.+. ....-...++.+....||.|++ ++ |. +--++.+.|++..
T Consensus 158 ~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~m----dG~e~~~~ir~~~- 232 (286)
T 3n0r_A 158 ELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGS----SGIDAVKDILGRM- 232 (286)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSC----CTTTTTHHHHHHT-
T ss_pred cCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCC----CHHHHHHHHHhcC-
Confidence 3456899998755566678888999999887 4432111123333457998876 22 21 1113455666655
Q ss_pred CCCEEEEeh
Q 031223 97 TVPLFGVCM 105 (163)
Q Consensus 97 ~~PvLGIC~ 105 (163)
++||+.+--
T Consensus 233 ~~piI~lT~ 241 (286)
T 3n0r_A 233 DVPVIFITA 241 (286)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEeC
Confidence 899998763
No 186
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=85.78 E-value=1.5 Score=29.13 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=41.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
.++|+|+|....+...+.+.|... |+.+.....+.. ....+....+|.+|+--.. +... -.+.+.+++.....|+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI--PSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC--SSSCHHHHHHHHTTSTTCCEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCC--CCCCHHHHHHHHHccCCCceE
Confidence 468999997655666788888876 666432222100 1122333479988873221 1111 1233444443344567
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 87 i~~s~ 91 (143)
T 2qv0_A 87 VFITA 91 (143)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 66653
No 187
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=85.67 E-value=2.3 Score=27.84 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~ 97 (163)
.+++|+|+|....+...+.+.|++.|+. +............+.. ..+|.|++-=. .+...+ .+.+.+++. ...
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~~g~~~~~~lr~~~~~~~ 81 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEMNGLDLVKKVRSDSRFKE 81 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSSCHHHHHHHHHTSTTCTT
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCC
Confidence 3578999997655666788889989985 4333211001122222 25887776211 122222 345555552 256
Q ss_pred CCEEEEeh
Q 031223 98 VPLFGVCM 105 (163)
Q Consensus 98 ~PvLGIC~ 105 (163)
.|++-+.-
T Consensus 82 ~pii~~s~ 89 (129)
T 3h1g_A 82 IPIIMITA 89 (129)
T ss_dssp CCEEEEES
T ss_pred CeEEEEeC
Confidence 89988773
No 188
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=85.51 E-value=2.4 Score=33.06 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=35.2
Q ss_pred CCCeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 23 NKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 23 ~~~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
++++|+||--+.|- ...+.++|++.|+++..+.........+...++|.++.
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 45789999765442 23477899999999998875432233444457898875
No 189
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=84.81 E-value=0.42 Score=31.40 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=43.3
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GP 96 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~ 96 (163)
....++|+|+|........+.+.|...|+ .+............+....+|.+++-=. .+...+ .+.+.+++. ..
T Consensus 3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 3 LAEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATK 80 (129)
T ss_dssp CSSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTST
T ss_pred ccccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCcccc
Confidence 34457899999765566678888888887 3432211000112223346898877221 111121 234444442 24
Q ss_pred CCCEEEEe
Q 031223 97 TVPLFGVC 104 (163)
Q Consensus 97 ~~PvLGIC 104 (163)
..|++-+.
T Consensus 81 ~~~ii~~s 88 (129)
T 1p6q_A 81 KAAFIILT 88 (129)
T ss_dssp TCEEEECC
T ss_pred CCCEEEEe
Confidence 67877664
No 190
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=84.70 E-value=0.57 Score=31.38 Aligned_cols=80 Identities=6% Similarity=0.123 Sum_probs=45.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh-----CCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-----GPT 97 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-----~~~ 97 (163)
..+|+|+|....+...+...|+..|+.+..........+.+....+|.+|+-=. .+. +.-.+.+.+++. ...
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQ--MPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTT--CCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHhhhhhcCCCc
Confidence 468999997655666677888888887766532111122233347998887221 111 112344555542 245
Q ss_pred CCEEEEeh
Q 031223 98 VPLFGVCM 105 (163)
Q Consensus 98 ~PvLGIC~ 105 (163)
.|++.+.-
T Consensus 88 ~~ii~~s~ 95 (140)
T 3c97_A 88 ASIIAITA 95 (140)
T ss_dssp CCCEEEES
T ss_pred eEEEEEeC
Confidence 78887753
No 191
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=84.59 E-value=5.3 Score=28.44 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=42.4
Q ss_pred CCeEEEEEC---------CCChHHHHHHHHHHc-----CCEEEEEe--CCCCCHHHH----hc----cCCCEEEeCCCCC
Q 031223 24 KNPIIVIDN---------YDSFTYNLCQYMGEL-----GYHFEVYR--NDELTVEEL----KR----KNPRGVLISPGPG 79 (163)
Q Consensus 24 ~~~Ilvid~---------~~~~~~~~~~~l~~~-----G~~~~v~~--~~~~~~~~~----~~----~~~dgvvl~GG~~ 79 (163)
.+++.||-- .+++...+.+.|++. |+++..+. .|+ .+.+ .. .++|.||.+||.+
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 457777732 244455677888887 88765332 232 2222 11 2699999999954
Q ss_pred CCCCChhHHHHHHHh-CCCCC
Q 031223 80 APQDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 80 ~~~d~~~~~~~i~~~-~~~~P 99 (163)
+.+.+...+.+.++ +...|
T Consensus 83 -~g~~D~t~~a~~~~~~~~l~ 102 (167)
T 1uuy_A 83 -FTPRDVTPEATKKVIERETP 102 (167)
T ss_dssp -SSTTCCHHHHHHHHCSEECH
T ss_pred -CCCCCchHHHHHHHhcCCCC
Confidence 44444455666664 43333
No 192
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=84.55 E-value=2.4 Score=28.63 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=38.9
Q ss_pred ChHHHHH----HHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCCh--hHHHHHHHh---CCCCCEEEEe
Q 031223 35 SFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG--ISLQTVLEL---GPTVPLFGVC 104 (163)
Q Consensus 35 ~~~~~~~----~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~--~~~~~i~~~---~~~~PvLGIC 104 (163)
+++..++ +.+++.|+++++++..+.+.+++. ++|.||+ |.|- .-...+ .+.+++.++ -+++|+.-+|
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~ 86 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGKKVALFG 86 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4555544 455667888888876544555654 7999988 4442 111112 345555553 2567766554
No 193
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=84.28 E-value=3 Score=29.39 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=43.5
Q ss_pred CCeEEEEEC-CCChHHHH----HHHHHHcCCEEEEEeCCCC-CHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh-
Q 031223 24 KNPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRNDEL-TVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL- 94 (163)
Q Consensus 24 ~~~Ilvid~-~~~~~~~~----~~~l~~~G~~~~v~~~~~~-~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~- 94 (163)
..+|+|+-. ..+++..+ .+.+++.|+++++++.... +.+++.. .++|+||| |.|--....+ ..+++..+
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p-~~~~l~~l~ 81 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMSPAASAAS-IQGALSTIL 81 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECCBTTSHHH-HHHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcCcCCCCcc-HHHHHHHHH
Confidence 356888843 22355554 4455667999999887644 5554421 36999998 5542211112 12333332
Q ss_pred ---CCCCCEEEEe
Q 031223 95 ---GPTVPLFGVC 104 (163)
Q Consensus 95 ---~~~~PvLGIC 104 (163)
-.++|+.-++
T Consensus 82 ~~~~~~k~va~fg 94 (159)
T 3fni_A 82 GSVNEKQAVGIFE 94 (159)
T ss_dssp HHCCTTSEEEEEC
T ss_pred hhcccCCEEEEEE
Confidence 3567766554
No 194
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=83.82 E-value=4 Score=31.11 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=40.5
Q ss_pred CeEEEEE--CCCCh----HHHHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 25 NPIIVID--NYDSF----TYNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 25 ~~Ilvid--~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
.+|.+|- ..+.| ...+.+++++.|+.+.+...+ .+.+ .+...++||||+.+...+ . ..+.+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~---~~~~~ 76 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYNGQ--V---LSNVV 76 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSSTT--S---CHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChh--h---hHHHH
Confidence 3566662 22333 334667778899999888754 2221 122358999999775321 1 12334
Q ss_pred HHh-CCCCCEEEE
Q 031223 92 LEL-GPTVPLFGV 103 (163)
Q Consensus 92 ~~~-~~~~PvLGI 103 (163)
+++ +.++|+.-+
T Consensus 77 ~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 77 KEAKQEGIKVLAY 89 (313)
T ss_dssp HHHHTTTCEEEEE
T ss_pred HHHHHCCCeEEEE
Confidence 433 456776543
No 195
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=83.42 E-value=0.8 Score=29.64 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=45.1
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~PvL 101 (163)
.+|+|+|....+...+.+.|+..|+.+............+....+|.+++-=. .+... -.+.+.+++. ....|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCCcEE
Confidence 47999997655667788889888987764421100112222347898887211 11112 2345555553 2468998
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 80 ~~s~ 83 (124)
T 1mb3_A 80 AVTA 83 (124)
T ss_dssp EEC-
T ss_pred EEEC
Confidence 8764
No 196
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=83.30 E-value=10 Score=28.11 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=42.6
Q ss_pred CCCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 23 ~~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
...+|.+|-. .+.|-.. +.+.+++.|+.+.+...+... .+.+...++||||+.+... .+.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~ 77 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQT 77 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHH
Confidence 3456777732 2234333 556677789999888754211 1122235899999977532 233
Q ss_pred HHHh-CCCCCEEEEe
Q 031223 91 VLEL-GPTVPLFGVC 104 (163)
Q Consensus 91 i~~~-~~~~PvLGIC 104 (163)
+..+ +.++|+.-+.
T Consensus 78 ~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 78 VQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHTTSSCEEEES
T ss_pred HHHHHHCCCCEEEEe
Confidence 3333 4678877654
No 197
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=83.26 E-value=2.7 Score=37.36 Aligned_cols=82 Identities=9% Similarity=0.016 Sum_probs=49.9
Q ss_pred CeEEEEECCC-Ch-------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCC----CC-hhHHHH
Q 031223 25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ----DS-GISLQT 90 (163)
Q Consensus 25 ~~Ilvid~~~-~~-------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~----d~-~~~~~~ 90 (163)
|+|+|||... .. ...+...|++.|+++............+... ++|.||+.=. .|. .. -++.+.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence 4899998764 44 5668889999999887664321112223333 4999998422 122 01 124566
Q ss_pred HHHhCCCCCEEEEehHHH
Q 031223 91 VLELGPTVPLFGVCMGLQ 108 (163)
Q Consensus 91 i~~~~~~~PvLGIC~G~Q 108 (163)
||+...++||+-+.-=.+
T Consensus 79 iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHSTTCCEEEEECHHH
T ss_pred HHHhCCCCCEEEEecCCc
Confidence 666555799998876544
No 198
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=83.21 E-value=1.5 Score=35.13 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=44.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG 102 (163)
..+|+|||........+.+.|++.|+++..........+.+....||.||+ -= ..|. +--++.+.+++.....|++-
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvll-D~-~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVIC-DL-RMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEE-CC-CSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEE-cC-CCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 468999997655666788889988987643221100122233357998877 11 1122 12234556666555688875
Q ss_pred Ee
Q 031223 103 VC 104 (163)
Q Consensus 103 IC 104 (163)
+-
T Consensus 83 lt 84 (394)
T 3eq2_A 83 LS 84 (394)
T ss_dssp C-
T ss_pred EE
Confidence 54
No 199
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=83.01 E-value=6.8 Score=29.25 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
+.+|.+|-. .+.|.. .+.+.+++.|+.+.+...+ .+.+ .+...++||||+.+.. .....+.
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~~~~~ 78 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGN-----LDVLNPW 78 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSC-----HHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhhHHH
Confidence 346777733 222332 3566777899999888654 2221 1223489999997652 1122334
Q ss_pred HHHh-CCCCCEEEE
Q 031223 91 VLEL-GPTVPLFGV 103 (163)
Q Consensus 91 i~~~-~~~~PvLGI 103 (163)
++++ +.++|+.-+
T Consensus 79 ~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 79 LQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCcEEEe
Confidence 4443 456887654
No 200
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=82.96 E-value=1.5 Score=33.45 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCeEEEEECC--CChHHH----HHHHHHHcCCEEEEEeCCC-CCH-------HHHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDNY--DSFTYN----LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~~--~~~~~~----~~~~l~~~G~~~~v~~~~~-~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+|.+|-.. +.|-.. +.+++++.|+.+.+...+. .+. +.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4568887433 234333 5567777899998876431 121 2222358999999765
No 201
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=82.87 E-value=3.1 Score=31.24 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+|.++-. .+.|... +.+++++.|+.+.+.... .+. +.+...++||||+.+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ-NDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345766632 2234333 556777889998887653 222 1222358999999764
No 202
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=82.75 E-value=6.8 Score=28.37 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=22.2
Q ss_pred CCeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCC
Q 031223 24 KNPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRND 57 (163)
Q Consensus 24 ~~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~ 57 (163)
.++|+||..- .+++..+.+ .+++.|.+++++...
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 3689999642 245665554 445578999888754
No 203
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=82.67 E-value=3.6 Score=28.01 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=42.9
Q ss_pred CeEEEEEC-CCChHHHHHHH----HHHcCCEEEEEeCCCCCHHHHhccC-CCEEEeCCCCCC-CCC---ChhHHHHHHHh
Q 031223 25 NPIIVIDN-YDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGA-PQD---SGISLQTVLEL 94 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~----l~~~G~~~~v~~~~~~~~~~~~~~~-~dgvvl~GG~~~-~~d---~~~~~~~i~~~ 94 (163)
|+|+|+-. ..+++..+++. +.+.|+++++++..+.+.+++. + +|.||+ |.|-- ... ...+..++.++
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~~d~ii~-~~p~y~~g~~~~p~~~~~fl~~l 77 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLF--EGFDLVLL-GCSTWGDDSIELQDDFIPLFDSL 77 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTT--TTCSEEEE-EECEECSSSCEECTTTHHHHHTG
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhc--CcCCEEEE-EeCCCCCCCcCCChhHHHHHHHH
Confidence 46777732 22356555554 4556888888875433333333 6 899988 44321 112 22344555543
Q ss_pred ----CCCCCEEEEehH
Q 031223 95 ----GPTVPLFGVCMG 106 (163)
Q Consensus 95 ----~~~~PvLGIC~G 106 (163)
-.++++.-+|.|
T Consensus 78 ~~~~l~~k~~~v~~~g 93 (147)
T 1f4p_A 78 EETGAQGRKVACFGCG 93 (147)
T ss_dssp GGSCCTTCEEEEEEEE
T ss_pred HhcccCCCEEEEEeec
Confidence 246777766654
No 204
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=82.01 E-value=5.7 Score=29.73 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=40.6
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.++-. .+.|... +.+.+++.|+.+.+...+. +.+ .+...++||||+.+... ... .+.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~--~~~---~~~ 81 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN-SRISEREQILEFVHLKVDAIFITTLDD--VYI---GSA 81 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHHHHTTCSEEEEECSCT--TTT---HHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCh--HHH---HHH
Confidence 346777733 2234333 5567778899998887542 221 12235899999976521 111 223
Q ss_pred HHHh-CCCCCEEEE
Q 031223 91 VLEL-GPTVPLFGV 103 (163)
Q Consensus 91 i~~~-~~~~PvLGI 103 (163)
++++ +.++|+.-+
T Consensus 82 ~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 82 IEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 3332 356777655
No 205
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=81.26 E-value=13 Score=31.05 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=38.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHh--------------ccCCCEEEeCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELK--------------RKNPRGVLISPGP 78 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~--------------~~~~dgvvl~GG~ 78 (163)
..+|+||-.+.+-...+++.|.+.|+.+.+.+..... .+.+. -.++|.||+|+|-
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 3689999998777767899999999999887643211 11111 0258999999885
No 206
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=81.03 E-value=5.4 Score=32.52 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCeEEEEECCCC--h---HHHHHHHHHHcCCEEEEEeCCCC----------------------CHHHHhccCCCEEEeCC
Q 031223 24 KNPIIVIDNYDS--F---TYNLCQYMGELGYHFEVYRNDEL----------------------TVEELKRKNPRGVLISP 76 (163)
Q Consensus 24 ~~~Ilvid~~~~--~---~~~~~~~l~~~G~~~~v~~~~~~----------------------~~~~~~~~~~dgvvl~G 76 (163)
-.+|+||--... . ...+.+||.+.|+++.+-+.... +.+++ ..++|.+|..|
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~lG 116 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICLG 116 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEES
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEEc
Confidence 457889843222 2 44588999999987765321000 00111 13689999999
Q ss_pred CCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223 77 GPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (163)
Q Consensus 77 G~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~ 107 (163)
|-+ .+....+.+ ...+|++||=.|.
T Consensus 117 GDG------T~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 117 GDG------TLLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp STT------HHHHHHHHCSSSCCCEEEEESSS
T ss_pred ChH------HHHHHHHHhccCCCCEEEEcCCC
Confidence 954 356666665 5679999999874
No 207
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=80.87 E-value=2.6 Score=27.50 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh-CCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-~~~~P 99 (163)
+++|+|+|....+...+.+.|... |+.+.....+.. ..+.+....+|.+++--. .+. +.-++.+.+++. ....|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDII--MPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCc
Confidence 468999987555566677888876 665432222210 112222347898887322 111 222345556653 34567
Q ss_pred EEEEe
Q 031223 100 LFGVC 104 (163)
Q Consensus 100 vLGIC 104 (163)
++-+.
T Consensus 80 ii~ls 84 (130)
T 1dz3_A 80 VIMLT 84 (130)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
No 208
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=80.59 E-value=6.3 Score=26.37 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhc-------cCCCEEEeCCCCCCCCCC-hhHHHHHH
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKR-------KNPRGVLISPGPGAPQDS-GISLQTVL 92 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~-------~~~dgvvl~GG~~~~~d~-~~~~~~i~ 92 (163)
..++|+|+|........+.+.|+..|....+...... ....+.. ..+|.||+-=. .+... -++.+.++
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~--lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIK 84 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC--CCCCcHHHHHHHHH
Confidence 3468999997655666788888888874333322211 1122221 25898887211 11212 23455566
Q ss_pred HhC--CCCCEEEEeh
Q 031223 93 ELG--PTVPLFGVCM 105 (163)
Q Consensus 93 ~~~--~~~PvLGIC~ 105 (163)
+.. ...|++-+.-
T Consensus 85 ~~~~~~~~piiils~ 99 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTT 99 (149)
T ss_dssp HCTTTTTSCEEEEES
T ss_pred hCcCcCCCeEEEEEC
Confidence 532 5689887753
No 209
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=80.58 E-value=0.15 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=13.5
Q ss_pred CEEEEehHHHHHHHHhC
Q 031223 99 PLFGVCMGLQCIGEAFG 115 (163)
Q Consensus 99 PvLGIC~G~QlLa~a~G 115 (163)
-..|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 44688999999987655
No 210
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=80.48 E-value=5.6 Score=26.11 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=43.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhc-----cCCCEEEeCCCCCCCCCCh-hHHHHHHH-hC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-LG 95 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~-----~~~dgvvl~GG~~~~~d~~-~~~~~i~~-~~ 95 (163)
.++|+|+|....+...+.+.|+..|+. +..........+.+.. ..||.+++-=. .|...+ .+.+.+++ ..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~~ 79 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLG 79 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCC--CCCCChHHHHHHHHhhcC
Confidence 367999997655666788888888875 4333211001222222 46898876211 122222 34556665 34
Q ss_pred CCCCEEEEe
Q 031223 96 PTVPLFGVC 104 (163)
Q Consensus 96 ~~~PvLGIC 104 (163)
...|++-+.
T Consensus 80 ~~~~ii~lt 88 (133)
T 2r25_B 80 YTSPIVALT 88 (133)
T ss_dssp CCSCEEEEE
T ss_pred CCCCEEEEE
Confidence 467888765
No 211
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=80.42 E-value=12 Score=28.42 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=32.4
Q ss_pred CCeEEEE--ECCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvi--d~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+|.++ +....|-.. +.+++++.|+.+.+...+ .+.+ .+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYAD-DDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3457766 333344333 556777899999887654 2221 122348999999765
No 212
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=79.33 E-value=1.1 Score=28.67 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=42.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
++|+|+|....+...+.+.|...|+.+............+....+|.+++--. .+... -++.+.+++ ....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~~~~ii~~ 78 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WSAVPVIVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CCCCcEEEE
Confidence 47999987655666788888888887654432100112222347898877211 11111 123444443 346888776
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 79 s 79 (121)
T 1zh2_A 79 S 79 (121)
T ss_dssp E
T ss_pred E
Confidence 4
No 213
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=79.25 E-value=14 Score=27.43 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=42.5
Q ss_pred CeEEEE--ECCCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 25 NPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 25 ~~Ilvi--d~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
.+|.+| +..+.|.. .+.+.+++.|+.+.+...+. +.+ .+...++||||+.+......+. ..+.+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN-NPDNERRGLENLLSQHIDGLIVEPTKSALQTP--NIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT--THHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHHCCCCEEEEecccccccCC--cHHHH
Confidence 467777 33333433 35567778999998887542 221 1223589999998764322111 11223
Q ss_pred HHh-CCCCCEEEEe
Q 031223 92 LEL-GPTVPLFGVC 104 (163)
Q Consensus 92 ~~~-~~~~PvLGIC 104 (163)
+++ +.++|+.-+.
T Consensus 93 ~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 93 LNLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHHTTCCEEEES
T ss_pred HHHHhcCCCEEEEe
Confidence 332 3567777553
No 214
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=78.91 E-value=12 Score=27.95 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=40.7
Q ss_pred CCeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.++- ..+.|... +.+.+++.|+.+.+...+. +.+ .+...++||||+.+... . .+.
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~---~----~~~ 79 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEG---E----HDY 79 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSS---C----CHH
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCC---C----hHH
Confidence 34677773 22234333 5567778899998887542 221 12235899999977642 1 123
Q ss_pred HHHh-CCCCCEEEE
Q 031223 91 VLEL-GPTVPLFGV 103 (163)
Q Consensus 91 i~~~-~~~~PvLGI 103 (163)
++.+ +.++|+.-+
T Consensus 80 ~~~~~~~~iPvV~~ 93 (291)
T 3egc_A 80 LRTELPKTFPIVAV 93 (291)
T ss_dssp HHHSSCTTSCEEEE
T ss_pred HHHhhccCCCEEEE
Confidence 3333 456666544
No 215
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=78.22 E-value=4.1 Score=30.70 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=41.8
Q ss_pred CCCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCC-CHH-------HHhccCCCEEEeCCCCCCCCCChhHH
Q 031223 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDEL-TVE-------ELKRKNPRGVLISPGPGAPQDSGISL 88 (163)
Q Consensus 23 ~~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~-~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~ 88 (163)
...+|.+|-. .+.|-.. +.+++++.|+.+.+...+.. +.+ .+...++||||+.+....... .
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~--~-- 79 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE--H-- 79 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST--T--
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH--H--
Confidence 4456777732 2334333 55667778999998876521 221 122348999999865322111 1
Q ss_pred HHHHHhCCCCCEEEE
Q 031223 89 QTVLELGPTVPLFGV 103 (163)
Q Consensus 89 ~~i~~~~~~~PvLGI 103 (163)
.++++..++|+.-+
T Consensus 80 -~~~~~~~~iPvV~~ 93 (304)
T 3o1i_D 80 -NLKSWVGNTPVFAT 93 (304)
T ss_dssp -THHHHTTTSCEEEC
T ss_pred -HHHHHcCCCCEEEe
Confidence 23332266887766
No 216
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=77.57 E-value=2 Score=28.37 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~ 54 (163)
.+++|+|+|........+.+.|+..|+.+...
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~ 37 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTV 37 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 45789999976555666888888889876544
No 217
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=77.49 E-value=6.5 Score=26.75 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=43.1
Q ss_pred CeEEEEEC-CCChHHHHHHH----HHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CC--CCC-hhHHHHHHHh-
Q 031223 25 NPIIVIDN-YDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-AP--QDS-GISLQTVLEL- 94 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~----l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~--~d~-~~~~~~i~~~- 94 (163)
++|+|+-. ..+++..++++ +++.|+++++++..+.+.+++.. ++|.+|+ |.|- .. ... +....++..+
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~-g~pty~~~~G~~p~~~~~fl~~l~ 79 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF-GCSAWGMEDLEMQDDFLSLFEEFD 79 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEE-EECEECSSSCEECHHHHHHHTTGG
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEE-EecccCCCCCCCcHHHHHHHHHhh
Confidence 36777732 23456655554 45568899998865333333321 6898888 4432 11 122 2344555443
Q ss_pred ---CCCCCEEEEehH
Q 031223 95 ---GPTVPLFGVCMG 106 (163)
Q Consensus 95 ---~~~~PvLGIC~G 106 (163)
-+++++.-++.|
T Consensus 80 ~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 80 RIGLAGRKVAAFASG 94 (148)
T ss_dssp GTCCTTCEEEEEEEE
T ss_pred ccCCCCCEEEEEEeC
Confidence 246776666554
No 218
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=77.35 E-value=3.3 Score=27.60 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=41.3
Q ss_pred CeEEEEECCCChHHHHHHHHHH--cCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~--~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~Pv 100 (163)
++|+|+|....+...+...|.. .|+.+.....+.. ....+....+|.+|+-=. .+. +.-++.+.+++.....|+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCcE
Confidence 5799999754455556667753 4665542222200 112223346898876221 111 222345556665556888
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+-+.
T Consensus 81 i~ls 84 (141)
T 3cu5_A 81 IFMS 84 (141)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8765
No 219
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=77.16 E-value=18 Score=27.09 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=31.3
Q ss_pred CeEEEE--ECCCChHHH----HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvi--d~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
.+|.+| +..+.|... +.+++++.|+.+.+...+ .+. +.+...++||||+.+.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSD-QNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 457776 333334333 556777899998877643 222 1222358999999775
No 220
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=76.76 E-value=5.4 Score=27.39 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=42.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG 102 (163)
++|+|||........+.+.|.+.|....+...... ..+.+....+|.||+-=.. ...+.-.+.+.+++... .|++-
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~l~~~lr~~~~-~~ii~ 103 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEM-PNLNGIEALKLIMKKAP-TRVIM 103 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHSC-CEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC-ceEEE
Confidence 68999997655666788888887644333222111 1122333479988873221 11112234555665433 78776
Q ss_pred Eeh
Q 031223 103 VCM 105 (163)
Q Consensus 103 IC~ 105 (163)
+.-
T Consensus 104 ~s~ 106 (164)
T 3t8y_A 104 VSS 106 (164)
T ss_dssp EES
T ss_pred Eec
Confidence 654
No 221
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=76.67 E-value=11 Score=29.67 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=50.2
Q ss_pred CeEEEEECCCC----hHHHHHHHHHHcCCEEEEEeCCCC-CHHH----HhccCCCEEEeCCCCCCCCCChhHHHHHHHh-
Q 031223 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL- 94 (163)
Q Consensus 25 ~~Ilvid~~~~----~~~~~~~~l~~~G~~~~v~~~~~~-~~~~----~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~- 94 (163)
++++||-|-.+ ....+.++|++.|+++.+...... ...+ ....++|.||+.||-++ +.+.++.+
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGT------l~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGT------INEVSTALI 103 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHH------HHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchH------HHHHHHHHh
Confidence 45777755322 233577788889999887764311 1212 11247899999999443 44444442
Q ss_pred ----CCCCCEEEEehHHHH-HHHHhC
Q 031223 95 ----GPTVPLFGVCMGLQC-IGEAFG 115 (163)
Q Consensus 95 ----~~~~PvLGIC~G~Ql-La~a~G 115 (163)
..++|+..|=.|--= +++.+|
T Consensus 104 ~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 104 QCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp HCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred hcccCCCCeEEEecCcCHHHHHHhcC
Confidence 467787777455433 556665
No 222
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=76.64 E-value=4.7 Score=30.09 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=31.4
Q ss_pred CCCeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 23 NKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 23 ~~~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
...+|.+|- ..+.|... +.+.+++.|+.+.+...+. +.+.....++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~vdgiI~~~~ 66 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKK-SHLFIPEKMVDGAIILDW 66 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTT-TTTCCCTTTCSEEEEECT
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCC-CHHHHhhccccEEEEecC
Confidence 345677773 23334333 5566677899988876532 111111127999999775
No 223
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=76.47 E-value=3.3 Score=33.51 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=46.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI 103 (163)
++|+|||........+...|...|+.+..........+.+....+|.||+-=. .+...+ ++.+.+++.....|++-+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~--mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLL--LPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 47999987655667788888888998765432111122233347898886211 122122 345556665566888776
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 79 T 79 (387)
T 1ny5_A 79 T 79 (387)
T ss_dssp E
T ss_pred e
Confidence 5
No 224
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=76.02 E-value=5.8 Score=32.75 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
+++...+..+|++.|+++..+. .| +.+.+. . .++|.||.+||.+ +.+.+...+.+.
T Consensus 203 dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~al~~a~~~~DlvittGG~s-~g~~D~t~~al~ 266 (411)
T 1g8l_A 203 DTNRLAVHLMLEQLGCEVINLGIIRD--DPHALRAAFIEADSQADVVISSGGVS-VGEADYTKTILE 266 (411)
T ss_dssp CCHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEECSSSC-SSSCSHHHHHHH
T ss_pred cCchHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHhhcCCEEEECCCCC-CCCcccHHHHHH
Confidence 4566778999999999876432 23 223321 1 2689999999954 444444444444
No 225
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=75.77 E-value=17 Score=25.59 Aligned_cols=78 Identities=13% Similarity=-0.082 Sum_probs=42.0
Q ss_pred CeEEEEEC-CCChHHHHHHHHHH-cCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCCh-hHHHHHHHh----C
Q 031223 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY-HFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG-ISLQTVLEL----G 95 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~l~~-~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~-~~~~~i~~~----~ 95 (163)
|+|+|+-. ..+++..+++.+.+ ++. .+++.+.......++. ++|.||| |.|- .....+ .+.+++..+ -
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~~~~~l~--~~d~ii~-g~pt~~~G~~p~~~~~f~~~l~~~~l 77 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLE--AYDILLL-GIPTWYYGEAQCDWDDFFPTLEEIDF 77 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGCCHHHHH--TCSEEEE-ECCEETTTEECHHHHHHHHHHTTCCC
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccCChhHhh--hCCEEEE-EEeecCCCcChHHHHHHHhhhhhccc
Confidence 46777743 22367778877755 332 4666664433344554 7999988 5442 111222 234444433 2
Q ss_pred CCCCEEEEeh
Q 031223 96 PTVPLFGVCM 105 (163)
Q Consensus 96 ~~~PvLGIC~ 105 (163)
+++|+.-+|.
T Consensus 78 ~gk~vavfg~ 87 (175)
T 1ag9_A 78 NGKLVALFGC 87 (175)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 4677766655
No 226
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=75.55 E-value=3.5 Score=29.61 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=43.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
.++|+|||....+...+...|...+ +.+.....+.. ..+.+....||.+|+-=. .+... -.+.+.+++.....|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~i 82 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLN--MPGMNGLETLDKLREKSLSGRI 82 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETT--STTSCHHHHHHHHHHSCCCSEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCcE
Confidence 4689999876555666777787764 55422222200 112222347998887221 11112 2345556654456788
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 83 i~ls~ 87 (215)
T 1a04_A 83 VVFSV 87 (215)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77653
No 227
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=74.28 E-value=12 Score=25.05 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=39.0
Q ss_pred eEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEE
Q 031223 26 PIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGV 103 (163)
Q Consensus 26 ~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGI 103 (163)
.=++|.|.... ...+.++|...|+++.- +.+. ..+.+|+.-|..+.+. ......|.. .+.++|++||
T Consensus 5 ~~lFISh~~~d~~~~L~~~l~~~~f~~~~--------~~I~--~~~~vIvL~G~~t~~s-~wv~~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 5 IRLYITEGEVEDYRVFLERLEQSGLEWRP--------ATPE--DADAVIVLAGLWGTRR-DEILGAVDLARKSSKPIITV 73 (111)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHHCSCEEE--------CCSS--SCSEEEEEGGGTTTSH-HHHHHHHHHHTTTTCCEEEE
T ss_pred EEEEEecccHhHHHHHHHHHhCCCCeeec--------Cccc--cCCEEEEEeCCCcCCC-hHHHHHHHHHHHcCCCEEEE
Confidence 34677765554 23355666555665543 2333 6788998888654332 223333443 4688999998
No 228
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=74.25 E-value=6.6 Score=27.35 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=31.4
Q ss_pred eEEEEEC-CCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCC
Q 031223 26 PIIVIDN-YDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~ 78 (163)
+++|+=. ..+++..+++.+.+ +|. +++.+.+..+..++. ++|.||| |.|
T Consensus 3 k~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~--~~d~ii~-g~p 53 (164)
T 2bmv_A 3 KIGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQFN--SFTKVIL-VAP 53 (164)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHT--TCSEEEE-EEE
T ss_pred eEEEEEECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHHh--hCCEEEE-EEC
Confidence 5667632 23467788888755 677 777775433455554 7999988 443
No 229
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=73.95 E-value=20 Score=26.27 Aligned_cols=52 Identities=8% Similarity=0.213 Sum_probs=30.5
Q ss_pred eEEEE--ECCCChHHH----HHHHHHHcCCEEEEEeCC-CCCHH-------HHhccC-CCEEEeCCC
Q 031223 26 PIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRND-ELTVE-------ELKRKN-PRGVLISPG 77 (163)
Q Consensus 26 ~Ilvi--d~~~~~~~~----~~~~l~~~G~~~~v~~~~-~~~~~-------~~~~~~-~dgvvl~GG 77 (163)
+|.+| +..+.|-.. +.+.+++.|+.+.+...+ ..+.+ .+...+ +||||+.+.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 56666 333344333 556777789998887532 12222 122346 999999764
No 230
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=73.87 E-value=25 Score=27.08 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=43.1
Q ss_pred CCeEEEEECC--C-ChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhc--cCCCEEEeCCCCCCCCCChhH
Q 031223 24 KNPIIVIDNY--D-SFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKR--KNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 24 ~~~Ilvid~~--~-~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~--~~~dgvvl~GG~~~~~d~~~~ 87 (163)
..+|.+|-.. + .|-.. +.+++++.|+.+.+...+ .+.+ .+.. .++||||+.+.. ...
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~~i~~~~~vDgiIi~~~~------~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAE-RDPQNTLQQARELFQGRDKPDYLMLVNEQ------YVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHHSSSCCSEEEEECCS------SHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHHHhcCCCCCEEEEeCch------hhH
Confidence 3567777432 2 23333 556777789999888654 2221 1222 489999997521 123
Q ss_pred HHHHHHh-CCCCCEEEEe
Q 031223 88 LQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 88 ~~~i~~~-~~~~PvLGIC 104 (163)
.+.++++ +.++|+.-+.
T Consensus 76 ~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHHhCCCcEEEEc
Confidence 3445554 5678887664
No 231
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=73.46 E-value=12 Score=26.51 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=21.0
Q ss_pred CeEEEEECC-CChHHHHHH----HHHH-cCCEEEEEeCC
Q 031223 25 NPIIVIDNY-DSFTYNLCQ----YMGE-LGYHFEVYRND 57 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~~~~----~l~~-~G~~~~v~~~~ 57 (163)
++|+||..- .+++..+.+ .+++ .|+++++++..
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 478888542 345555544 4555 68899888754
No 232
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=73.17 E-value=12 Score=28.01 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=40.2
Q ss_pred CCeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCC-C-H-H---H---HhccCCCEEEeCCCCCCCCCChhHH
Q 031223 24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDEL-T-V-E---E---LKRKNPRGVLISPGPGAPQDSGISL 88 (163)
Q Consensus 24 ~~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~-~-~-~---~---~~~~~~dgvvl~GG~~~~~d~~~~~ 88 (163)
..+|.+|- ..+.|-.. +.+.+++.|+.+.+...+.. . . + . +...++||||+.+...+ ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~~~ 83 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DEDL 83 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HHHH
Confidence 34677773 22234333 55667778999887754311 1 1 1 1 22358999999775321 2222
Q ss_pred HHHHHhCCCCCEEEEe
Q 031223 89 QTVLELGPTVPLFGVC 104 (163)
Q Consensus 89 ~~i~~~~~~~PvLGIC 104 (163)
+.+++ .++|+.-+.
T Consensus 84 ~~l~~--~~iPvV~~~ 97 (290)
T 2rgy_A 84 DELHR--MHPKMVFLN 97 (290)
T ss_dssp HHHHH--HCSSEEEES
T ss_pred HHHhh--cCCCEEEEc
Confidence 23332 457877654
No 233
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=72.61 E-value=13 Score=27.84 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=39.1
Q ss_pred eEEEE-ECCCChHHH----HHHHHHHcCCEEEEEeCCCC-C----HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC
Q 031223 26 PIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDEL-T----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG 95 (163)
Q Consensus 26 ~Ilvi-d~~~~~~~~----~~~~l~~~G~~~~v~~~~~~-~----~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~ 95 (163)
+|.+| +..+.|-.. +.+.+++.|+.+.+...+.. . .+.+...++||||+.+...+ . +.++.+.
T Consensus 14 ~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~---~~~~~~~ 86 (289)
T 3k9c_A 14 LLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----T---DELGALA 86 (289)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----H---HHHHHHH
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----H---HHHHHHH
Confidence 34444 544444333 55677788999888764321 1 12223357999999875321 1 2233332
Q ss_pred CCCCEEEEe
Q 031223 96 PTVPLFGVC 104 (163)
Q Consensus 96 ~~~PvLGIC 104 (163)
+++|+.-+.
T Consensus 87 ~~iPvV~i~ 95 (289)
T 3k9c_A 87 DRVPALVVA 95 (289)
T ss_dssp TTSCEEEES
T ss_pred cCCCEEEEc
Confidence 267776553
No 234
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=72.34 E-value=5 Score=33.01 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
+++...+..+|++.|+++..+. .| +.+.+. . .++|.||.+||.+ +.+.+...+.+.+
T Consensus 206 DsN~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~DlVittGG~s-~g~~D~t~~al~~ 270 (402)
T 1uz5_A 206 DINGRALCDAINELGGEGIFMGVARD--DKESLKALIEKAVNVGDVVVISGGAS-GGTKDLTASVIEE 270 (402)
T ss_dssp CCHHHHHHHHHHHHTSEEEEEEEECS--SHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHH
T ss_pred cchHHHHHHHHHhCCCeEEEEEEeCC--CHHHHHHHHHHHhhCCCEEEEcCCCC-CCCcccHHHHHHh
Confidence 4566778999999999876432 23 223321 1 2689999999954 4444444444443
No 235
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=71.67 E-value=4 Score=32.89 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=46.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe---CCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI---SPGPGAPQDSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl---~GG~~~~~d~~~~~~~i~~~~~~~PvL 101 (163)
++|+|||........+.+.|+..|+.+..........+.+....||.|++ .++. +--++.+.+++.....|++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllDi~mP~~----dG~ell~~lr~~~~~~pvI 76 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDG----DGVNFIDFIKENSPDSVVI 76 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTE----ETTTHHHHHHHHCTTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCC----CHHHHHHHHHhhCCCCeEE
Confidence 37999987655667788889999998765432111122233457997776 1210 1123556666655668887
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 77 ~lT 79 (368)
T 3dzd_A 77 VIT 79 (368)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 236
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=71.41 E-value=18 Score=27.26 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=40.8
Q ss_pred CeEEEE--ECCCChHH----HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 25 NPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 25 ~~Ilvi--d~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
.+|.+| +..+.|-. .+.+.+++.|+.+.+...+.... +.+...++||||+.+...+ ... .+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---~~~---~~~ 89 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF---DDD---MLA 89 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC---CHH---HHH
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC---cHH---HHH
Confidence 357776 33333433 35567778999998887542221 1223458999999876322 111 233
Q ss_pred Hh-CCCCCEEEEe
Q 031223 93 EL-GPTVPLFGVC 104 (163)
Q Consensus 93 ~~-~~~~PvLGIC 104 (163)
.+ + ++|+.-+.
T Consensus 90 ~l~~-~iPvV~i~ 101 (303)
T 3kke_A 90 AVLE-GVPAVTIN 101 (303)
T ss_dssp HHHT-TSCEEEES
T ss_pred HHhC-CCCEEEEC
Confidence 32 3 68877653
No 237
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=71.38 E-value=29 Score=25.80 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCeEEEE--E-C---CCChHHH----HHHHHHHcCCEEEEEeCCCC---C---HHHHhccCCCEEEeCCC
Q 031223 23 NKNPIIVI--D-N---YDSFTYN----LCQYMGELGYHFEVYRNDEL---T---VEELKRKNPRGVLISPG 77 (163)
Q Consensus 23 ~~~~Ilvi--d-~---~~~~~~~----~~~~l~~~G~~~~v~~~~~~---~---~~~~~~~~~dgvvl~GG 77 (163)
...+|.+| + . .+.|-.. +.+++++.|+.+.+...+.. . .+.+...++||||+.+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 34467666 3 2 3334333 55667778998877643211 1 12233458999999765
No 238
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=70.94 E-value=3.8 Score=29.55 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=42.7
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH-hc-cCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL-KR-KNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~-~~-~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
++|+|+|........+.+.|...| .+.... +..+. .. ..+|.+|+-=. .+... -++.+.+++.....|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~----~~~~al~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFL----TGEDFLNDEEAFHVVVLDVM--LPDYSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEES----SHHHHHHCCSCCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEEC----CHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence 579999876556667888888777 544332 22222 11 46898877221 11112 23455566654678988
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+.
T Consensus 76 ~lt 78 (220)
T 1p2f_A 76 LLT 78 (220)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 239
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=70.88 E-value=32 Score=26.04 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCCCCeEEEEECC---CChHHHHHHH----HHHcCCEEEEEeCCCCC-----------HHHHhc--cCCCEEEeCCCCCC
Q 031223 21 KNNKNPIIVIDNY---DSFTYNLCQY----MGELGYHFEVYRNDELT-----------VEELKR--KNPRGVLISPGPGA 80 (163)
Q Consensus 21 ~~~~~~Ilvid~~---~~~~~~~~~~----l~~~G~~~~v~~~~~~~-----------~~~~~~--~~~dgvvl~GG~~~ 80 (163)
.+..++|++|... .+++..+.++ +++.|++++++...+.+ ..++.. .+.|+||| +.|-=
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP~Y 109 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSPER 109 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEECS
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeCCC
Confidence 3344789999542 3566665554 45569999988654322 122211 26899999 55421
Q ss_pred -CCCChhHHHHHHHh---------CCCCCEEEEeh
Q 031223 81 -PQDSGISLQTVLEL---------GPTVPLFGVCM 105 (163)
Q Consensus 81 -~~d~~~~~~~i~~~---------~~~~PvLGIC~ 105 (163)
..-...+..+|..+ -.+||+.-|+-
T Consensus 110 n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 11223344444432 14788877665
No 240
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=70.77 E-value=4.9 Score=30.30 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=30.6
Q ss_pred CeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCC-----HHHHhccCCCEEEeCCC
Q 031223 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~-----~~~~~~~~~dgvvl~GG 77 (163)
.+|.++-. ...|-. .+.+.+++.|+++.+....... .+.+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45666633 223333 3556777789998877653111 11222357999999764
No 241
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=70.67 E-value=7.6 Score=25.85 Aligned_cols=76 Identities=4% Similarity=-0.057 Sum_probs=40.9
Q ss_pred CCCCeEEEEECCCChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-h-C
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L-G 95 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~-~ 95 (163)
...++|+++=..+--+..+.+ +.++.|+++++........++.. .+||.|+++ |.-.+. .+.+++ . .
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~-~~~DvvLLg--PQV~y~----~~~ik~~~~~ 76 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIM-GVYDLIILA--PQVRSY----YREMKVDAER 76 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTG-GGCSEEEEC--GGGGGG----HHHHHHHHTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhc-cCCCEEEEC--hHHHHH----HHHHHHHhhh
Confidence 345688888655444444444 55557999888542111122222 379988883 332222 233444 3 3
Q ss_pred CCCCEEEEe
Q 031223 96 PTVPLFGVC 104 (163)
Q Consensus 96 ~~~PvLGIC 104 (163)
.++|+.-|=
T Consensus 77 ~~ipV~vI~ 85 (108)
T 3nbm_A 77 LGIQIVATR 85 (108)
T ss_dssp TTCEEEECC
T ss_pred cCCcEEEeC
Confidence 479988654
No 242
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=70.11 E-value=2.3 Score=28.43 Aligned_cols=84 Identities=8% Similarity=0.121 Sum_probs=44.0
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhcc-CCCEEEeCCCCCCCCCChhHHHHHHHhCC
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGP 96 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~-~~dgvvl~GG~~~~~d~~~~~~~i~~~~~ 96 (163)
.++.+.+|+|+|........+.+.|+.. |+.+.....+.. ..+.+... .+|.||+-=.-.. .+.-.+.+.+++...
T Consensus 9 ~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~-~~g~~~~~~lr~~~~ 87 (145)
T 3kyj_B 9 HHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPV-MDGMEFLRHAKLKTR 87 (145)
T ss_dssp --CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCC-CTTCHHHHHHHHHCC
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCC-CCHHHHHHHHHhcCC
Confidence 3456678999997655666788888877 666532222210 12223334 6998888321111 112234555665432
Q ss_pred CCCEEEEeh
Q 031223 97 TVPLFGVCM 105 (163)
Q Consensus 97 ~~PvLGIC~ 105 (163)
.|++-+..
T Consensus 88 -~~iiil~~ 95 (145)
T 3kyj_B 88 -AKICMLSS 95 (145)
T ss_dssp -CEEC-CBS
T ss_pred -CCeEEEEE
Confidence 66665553
No 243
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=70.00 E-value=13 Score=27.81 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 23 ~~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
...+|.++-. ...|-.. +.+.+++.|+.+.+...+ .+.+ .+...++||||+.+...+ ....+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~ 81 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTE-SDLARSRSCLTLLSGKMVDGVITMDALSE----LPELQ 81 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHTHHHHTTCCSEEEECCCGGG----HHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCC----hHHHH
Confidence 3446777743 2233333 556677789998887653 2221 122357999999765211 12222
Q ss_pred HHHHhCCCCCEEEEe
Q 031223 90 TVLELGPTVPLFGVC 104 (163)
Q Consensus 90 ~i~~~~~~~PvLGIC 104 (163)
.+. .++|+..+.
T Consensus 82 ~l~---~~iPvV~~~ 93 (285)
T 3c3k_A 82 NII---GAFPWVQCA 93 (285)
T ss_dssp HHH---TTSSEEEES
T ss_pred HHh---cCCCEEEEc
Confidence 232 567877653
No 244
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=69.41 E-value=31 Score=26.41 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=40.6
Q ss_pred CeEEEE--ECCCCh----HHHHHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 25 NPIIVI--DNYDSF----TYNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 25 ~~Ilvi--d~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
.+|.++ +....| ...+.+.+++.|+.+.+...+... .+.+...++||||+.+...+ ....+.+.
T Consensus 63 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~~~~~~l~ 138 (339)
T 3h5o_A 63 RTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA----EPFERILS 138 (339)
T ss_dssp CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----TTHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC----HHHHHHHh
Confidence 457777 222233 334667778899999887654211 11222358999999874321 12223333
Q ss_pred HhCCCCCEEEE
Q 031223 93 ELGPTVPLFGV 103 (163)
Q Consensus 93 ~~~~~~PvLGI 103 (163)
+ .++|+.-+
T Consensus 139 ~--~~iPvV~~ 147 (339)
T 3h5o_A 139 Q--HALPVVYM 147 (339)
T ss_dssp H--TTCCEEEE
T ss_pred c--CCCCEEEE
Confidence 3 45777655
No 245
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=69.23 E-value=8.8 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=23.7
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 23 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred HHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5567777899988776432111 1222347999999754
No 246
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=69.11 E-value=22 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=18.8
Q ss_pred CCeEEEEEC-CCChHHHHHHHHHH-cCCEEE
Q 031223 24 KNPIIVIDN-YDSFTYNLCQYMGE-LGYHFE 52 (163)
Q Consensus 24 ~~~Ilvid~-~~~~~~~~~~~l~~-~G~~~~ 52 (163)
.++++|+-+ ..+.+..+++.+.+ .|.+..
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~ 43 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAAVGGDLY 43 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCeE
Confidence 357888844 23468788888855 576543
No 247
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=68.77 E-value=3.1 Score=34.17 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=45.4
Q ss_pred CeEEEEECCCCh-----HHHHHHHHHHc--CCEEEEEeCC------C-----------------CCHHHHhccCCCEEEe
Q 031223 25 NPIIVIDNYDSF-----TYNLCQYMGEL--GYHFEVYRND------E-----------------LTVEELKRKNPRGVLI 74 (163)
Q Consensus 25 ~~Ilvid~~~~~-----~~~~~~~l~~~--G~~~~v~~~~------~-----------------~~~~~~~~~~~dgvvl 74 (163)
.+|+||-+...- ...+.++|.+. |+++.+-+.. . ...+++ ..++|.||.
T Consensus 42 k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIv 120 (388)
T 3afo_A 42 QNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDI-VNRTDLLVT 120 (388)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHH-HHHCSEEEE
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccccchhhc-ccCCCEEEE
Confidence 468898764432 23467788887 7766432110 0 001111 125899999
Q ss_pred CCCCCCCCCChhHHHHHHHh-CCCC-CEEEEehH
Q 031223 75 SPGPGAPQDSGISLQTVLEL-GPTV-PLFGVCMG 106 (163)
Q Consensus 75 ~GG~~~~~d~~~~~~~i~~~-~~~~-PvLGIC~G 106 (163)
.||-+ .+....+.+ ..++ |+|||=.|
T Consensus 121 lGGDG------TlL~aa~~~~~~~vpPiLGIN~G 148 (388)
T 3afo_A 121 LGGDG------TILHGVSMFGNTQVPPVLAFALG 148 (388)
T ss_dssp EESHH------HHHHHHHTTTTSCCCCEEEEECS
T ss_pred EeCcH------HHHHHHHHhcccCCCeEEEEECC
Confidence 99943 456666665 4567 89999887
No 248
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=67.93 E-value=31 Score=25.65 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=37.3
Q ss_pred CCeEEEE--ECCCChHHH----HHHHHHHcCCEEEEE-eCCCC------CHHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVY-RNDEL------TVEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvi--d~~~~~~~~----~~~~l~~~G~~~~v~-~~~~~------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.++ +..+.|-.. +.+.+++.|+.+.+. ..... ..+.+...++||||+.+...+ + ...+.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~--~~~~~ 83 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT--D--DNLQL 83 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC--------CHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC--H--HHHHH
Confidence 3467777 333345433 456667789998876 43211 122333458999999765321 1 11222
Q ss_pred HHHhCCCCCEEEEe
Q 031223 91 VLELGPTVPLFGVC 104 (163)
Q Consensus 91 i~~~~~~~PvLGIC 104 (163)
++ +.++|+.-+-
T Consensus 84 l~--~~~iPvV~~~ 95 (290)
T 3clk_A 84 LQ--SSDVPYCFLS 95 (290)
T ss_dssp HH--CC--CEEEES
T ss_pred HH--hCCCCEEEEc
Confidence 22 3568877653
No 249
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=67.85 E-value=34 Score=25.25 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCeEEEEE-------CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCC
Q 031223 24 KNPIIVID-------NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGP 78 (163)
Q Consensus 24 ~~~Ilvid-------~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~ 78 (163)
..+|.+|- ..+.|... +.+.+++.|+.+.+...+. +.+ .+...++||||+.+..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGET-EEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCS-HHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34677773 23345443 5556777899988765431 111 1223589999997753
No 250
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=67.74 E-value=9.4 Score=27.11 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=22.8
Q ss_pred CCCEEEeCCCCCCCC-CChhHHHHHHHh---CCCCCEEEEehHH
Q 031223 68 NPRGVLISPGPGAPQ-DSGISLQTVLEL---GPTVPLFGVCMGL 107 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~-d~~~~~~~i~~~---~~~~PvLGIC~G~ 107 (163)
++|+||+ +.|-=.. -...+..++.++ -.++|++-++.|.
T Consensus 84 ~aD~iI~-~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~G~ 126 (191)
T 1t0i_A 84 ALDIIVF-VTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYGG 126 (191)
T ss_dssp TCSEEEE-EEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEEET
T ss_pred hCCEEEE-EeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 7999999 5543111 223455556553 2578888776553
No 251
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=67.63 E-value=14 Score=24.33 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=29.4
Q ss_pred CeEEEE-ECCCC---hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCC
Q 031223 25 NPIIVI-DNYDS---FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (163)
Q Consensus 25 ~~Ilvi-d~~~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~G 76 (163)
++|+++ ..+-+ ....+.+++++.|+++++...+....++.. .++|.+++++
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~-~~~Dvil~~p 58 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKG-QNADVVLLGP 58 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHH-HHCSEEEECT
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc-cCCCEEEEcc
Confidence 467777 22222 133466788889998887765433333321 2689777643
No 252
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=67.19 E-value=31 Score=27.28 Aligned_cols=82 Identities=13% Similarity=0.003 Sum_probs=44.5
Q ss_pred CCCeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCC-CCCCChhHHHHHHH-
Q 031223 23 NKNPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG-APQDSGISLQTVLE- 93 (163)
Q Consensus 23 ~~~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~-~~~d~~~~~~~i~~- 93 (163)
..++++++-.- .+++..+++ .+.+.|++++++.....+.+++. -.++|+||| |.|- .-.....+..++..
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iii-gsP~y~~~~~~~~k~~ld~l 333 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIAL-GAPTIYDEPYPSVGDLLMYL 333 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCEETTEECTHHHHHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEE-ECccccccchHHHHHHHHHh
Confidence 34677777432 235555554 44456889988876544444221 137999999 5542 11112233334432
Q ss_pred --h-C---CCCCEEEEeh
Q 031223 94 --L-G---PTVPLFGVCM 105 (163)
Q Consensus 94 --~-~---~~~PvLGIC~ 105 (163)
. . ++||+.-+|-
T Consensus 334 ~~~~~~~l~~k~~~~~~~ 351 (404)
T 2ohh_A 334 RGLKFNRTLTRKALVFGS 351 (404)
T ss_dssp HHHCGGGTCCEEEEEEEE
T ss_pred hhccccccCCCEEEEEEe
Confidence 2 2 6788876653
No 253
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=66.11 E-value=6.8 Score=32.37 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
+++...+..+|++.|+++..+. .| +.+.+. . .++|.||.+||. ++.+.+...+.+
T Consensus 207 dsN~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~DlVittGG~-s~g~~D~t~~al 269 (419)
T 2fts_A 207 DSNRSTLLATIQEHGYPTINLGIVGD--NPDDLLNALNEGISRADVIITSGGV-SMGEKDYLKQVL 269 (419)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEEEECS--SHHHHHHHHHHHHHHCSEEEEESCC-SSSCCHHHHHHH
T ss_pred cCchHHHHHHHHHCCCEEEEEeecCC--CHHHHHHHHHHHHhcCCEEEEcCCC-cCCCcccHHHHH
Confidence 4566678999999998776432 23 223321 1 258999999995 455555555555
No 254
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=66.09 E-value=21 Score=27.55 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCeEEEE--ECCCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVI--DNYDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvi--d~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.+| +....|-. .+.+.+++.|+.+.+...+. +.+ .+...++||||+.+... .....+.
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdGiIi~~~~~----~~~~~~~ 142 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDY-LPEKEEKVLYEMLSWRPSGVIIAGLEH----SEAARAM 142 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTT-CHHHHHHHHHHHHTTCCSEEEEECSCC----CHHHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEECCCC----CHHHHHH
Confidence 3467777 33333433 35566677899998776542 221 12235799999976432 1122222
Q ss_pred HHHhCCCCCEEEE
Q 031223 91 VLELGPTVPLFGV 103 (163)
Q Consensus 91 i~~~~~~~PvLGI 103 (163)
+. ..++|+.-+
T Consensus 143 l~--~~~iPvV~i 153 (344)
T 3kjx_A 143 LD--AAGIPVVEI 153 (344)
T ss_dssp HH--HCSSCEEEE
T ss_pred HH--hCCCCEEEE
Confidence 33 356787765
No 255
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=65.72 E-value=14 Score=25.42 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=19.1
Q ss_pred CCCeEEEEEC-CCChHHHHHHHH-HHc-CCEE
Q 031223 23 NKNPIIVIDN-YDSFTYNLCQYM-GEL-GYHF 51 (163)
Q Consensus 23 ~~~~Ilvid~-~~~~~~~~~~~l-~~~-G~~~ 51 (163)
|.++|+|+=+ ..+.+..+++.+ +.+ +..+
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~ 33 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKDSEL 33 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTTCEE
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccCCCE
Confidence 3456888844 234788899988 555 6653
No 256
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=65.39 E-value=39 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=21.7
Q ss_pred CeEEEEECC---CChHHHHHHHH----HHc-CCEEEEEeCC
Q 031223 25 NPIIVIDNY---DSFTYNLCQYM----GEL-GYHFEVYRND 57 (163)
Q Consensus 25 ~~Ilvid~~---~~~~~~~~~~l----~~~-G~~~~v~~~~ 57 (163)
|+|++|... .+++..+.+++ ++. |.+++++...
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 479999653 26776665544 444 9999888643
No 257
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=65.25 E-value=48 Score=26.16 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=32.9
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEE-eCCC----------------CCHHHHhc-cCCCEEEeCCC
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY-RNDE----------------LTVEELKR-KNPRGVLISPG 77 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~-~~~~----------------~~~~~~~~-~~~dgvvl~GG 77 (163)
++||.++||.||-.+..-...+...+...++++.-+ ..+. .+.+++.. .++|+|+|..-
T Consensus 21 ~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 21 QSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp -----CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred hhhccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 556667899999886433345666666678876543 2220 13344433 36899999543
No 258
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=65.02 E-value=4.3 Score=30.42 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=31.2
Q ss_pred CCeEEEEEC--CCChHH----HHHHHHHHcCCE-EEEEeCCCCCH-------HHHhccCCCEEEeCC
Q 031223 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYH-FEVYRNDELTV-------EELKRKNPRGVLISP 76 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~----~~~~~l~~~G~~-~~v~~~~~~~~-------~~~~~~~~dgvvl~G 76 (163)
+.+|.++-. .+.|-. .+.+.+++.|+. +.+.... .+. +.+...++||||+.+
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTN-SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSS-CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 346777733 223433 355677789999 7776543 222 122235899999987
No 259
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=64.61 E-value=25 Score=26.00 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCeEEEEEC--C--CChHHH----HHHHHHHcCCEEEEEeCC-CCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN--Y--DSFTYN----LCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~--~~~~~~----~~~~l~~~G~~~~v~~~~-~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+|.++-. . +.|-.. +.+.+++.|+.+.+...+ ..+.+ .+...++||||+.+.
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 346777732 2 234333 455677789998876542 12221 222358999999765
No 260
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=64.44 E-value=47 Score=25.61 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=50.5
Q ss_pred CeEEEEECCCC-------hHHHHHHHHHHcCCEEEEEeCCCCC-HHHHh---ccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 25 NPIIVIDNYDS-------FTYNLCQYMGELGYHFEVYRNDELT-VEELK---RKNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 25 ~~Ilvid~~~~-------~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~---~~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
++++||-|-.+ ....+.++|++.|+++++....... ..++. ..++|.||+.||-+ .+.+.+..
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDG------Tl~~v~~~ 82 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDG------TVFECTNG 82 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHH------HHHHHHHH
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccch------HHHHHHHH
Confidence 46777755322 1234667888899999887653221 22221 23799999999943 23444444
Q ss_pred h-C--CCCCEEEEehHHH-HHHHHhC
Q 031223 94 L-G--PTVPLFGVCMGLQ-CIGEAFG 115 (163)
Q Consensus 94 ~-~--~~~PvLGIC~G~Q-lLa~a~G 115 (163)
+ . .+.|+..|=.|-. -+|+.+|
T Consensus 83 l~~~~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 83 LAPLEIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred HhhCCCCCcEEEecCCcHHHHHHHcC
Confidence 3 2 5677776666654 5666665
No 261
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=64.26 E-value=15 Score=25.71 Aligned_cols=47 Identities=4% Similarity=0.141 Sum_probs=27.1
Q ss_pred eEEEEEC-CCChHHHHHHHH----HHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 26 PIIVIDN-YDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~~~~~l----~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
+++|+=. ..+++..+++.+ .+.|+++++++.++.+..++. ++|.|||
T Consensus 11 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~ 62 (167)
T 1ykg_A 11 GITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIA--SEKLLIV 62 (167)
T ss_dssp -CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGG--GCSEEEE
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhc--cCCeEEE
Confidence 4556522 234566655544 445888887765433344443 6898888
No 262
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=64.01 E-value=53 Score=26.09 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=44.3
Q ss_pred CeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCC-CCCChhHHHHHHHh--
Q 031223 25 NPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGA-PQDSGISLQTVLEL-- 94 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~-~~d~~~~~~~i~~~-- 94 (163)
++|+|+-.- .+++..+++ .+.+.|++++++...+.+..++. -.++|+||| |.|-- -.....+..++.++
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iii-gsP~y~~~~~~~~k~fld~l~~ 335 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAF-ASPTLNNTMMPSVAAALNYVRG 335 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEE-ECCCBTTBCCHHHHHHHHHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEE-EcCccCcCchHHHHHHHHHHHh
Confidence 578888442 235555554 44557888888875434443221 127999999 55421 12223344444432
Q ss_pred --C-CCCCEEEEeh
Q 031223 95 --G-PTVPLFGVCM 105 (163)
Q Consensus 95 --~-~~~PvLGIC~ 105 (163)
- +++|+.-+|-
T Consensus 336 ~~~~~~K~~~~~~t 349 (414)
T 2q9u_A 336 LTLIKGKPAFAFGA 349 (414)
T ss_dssp HTTTTTSBEEEEEE
T ss_pred hcccCCCEEEEEEe
Confidence 2 6788875553
No 263
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=63.81 E-value=28 Score=25.93 Aligned_cols=74 Identities=9% Similarity=0.174 Sum_probs=40.8
Q ss_pred CCCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 23 ~~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
...+|.+|-. .+.|... +.+.+++.|+.+.+...+. +.+ .+...++||||+.+.... +. +
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgii~~~~~~~--~~----~ 91 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSED-QPDNEMRCIEHLLQRQVDAIIVSTSLPP--EH----P 91 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCSSCT--TC----H
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCCC--cH----H
Confidence 3456777732 2234333 5566777899988776532 221 222357999999775321 11 2
Q ss_pred HHHHh-CCCCCEEEE
Q 031223 90 TVLEL-GPTVPLFGV 103 (163)
Q Consensus 90 ~i~~~-~~~~PvLGI 103 (163)
.+..+ +.++|+.-+
T Consensus 92 ~~~~~~~~~iPvV~~ 106 (293)
T 2iks_A 92 FYQRWANDPFPIVAL 106 (293)
T ss_dssp HHHTTTTSSSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 23333 356777654
No 264
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=63.73 E-value=14 Score=25.61 Aligned_cols=78 Identities=9% Similarity=-0.042 Sum_probs=41.4
Q ss_pred CeEEEEEC-CCChHHHHHHHHHH-cCC--EEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCCh-hHHHHHHHh----
Q 031223 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY--HFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG-ISLQTVLEL---- 94 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~l~~-~G~--~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~-~~~~~i~~~---- 94 (163)
++|+|+-. ..+++..+++.+.+ ++. .+++++....+.+++. ++|.||+ |.|- .-...+ ...+++..+
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~-g~pty~~g~~p~~~~~f~~~l~~~~ 77 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLN--AYDYLII-GCPTWNVGELQSDWEGIYDDLDSVN 77 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGGG--GCSEEEE-ECCEETTTEECHHHHHHGGGGGGSC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHHh--hCCEEEE-EecccCCCcCCHHHHHHHHHhhhhc
Confidence 35777743 22467777777754 343 4777765433334443 7999998 5442 111122 233334332
Q ss_pred CCCCCEEEEeh
Q 031223 95 GPTVPLFGVCM 105 (163)
Q Consensus 95 ~~~~PvLGIC~ 105 (163)
-+++|+.-+|.
T Consensus 78 l~gk~~~~f~t 88 (169)
T 1czn_A 78 FQGKKVAYFGA 88 (169)
T ss_dssp CTTCEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 25678776664
No 265
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=63.21 E-value=26 Score=25.97 Aligned_cols=54 Identities=11% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCeEEEE--EC-CCChHHH----HHHHHHHc-CCEEEEEeC--CCCCH-------HHHhccCCCEEEeCCC
Q 031223 24 KNPIIVI--DN-YDSFTYN----LCQYMGEL-GYHFEVYRN--DELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvi--d~-~~~~~~~----~~~~l~~~-G~~~~v~~~--~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
..+|.+| +. .+.|-.. +.+.+++. |+.+.+... +..+. +.+...++||||+.+.
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred cceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3456666 33 3445444 45566667 887776532 11122 1223458999999765
No 266
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=62.91 E-value=31 Score=26.31 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
..+|.+|-. ...|-.. +.+.+++.|+.+.+...+. +. +.+...++||||+.+.
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDN-DVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCC-ChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 346777732 2234333 5566777899988876532 22 1222357999999775
No 267
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=62.65 E-value=12 Score=29.92 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=42.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv 100 (163)
.++|+|+|....+...+.+.|... |+++.....+.. ..+.+....+|.+++-=. .+... -++.+.+++... .|+
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi~--mp~~dGlell~~l~~~~p-~pV 79 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVE--MPRMDGLDFLEKLMRLRP-MPV 79 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECC--CSSSCHHHHHHHHHHSSC-CCE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHhcCC-CcE
Confidence 468999997544566677888875 766432322210 122233347998887211 11111 133444554333 888
Q ss_pred EEEeh
Q 031223 101 FGVCM 105 (163)
Q Consensus 101 LGIC~ 105 (163)
+-+.-
T Consensus 80 IvlS~ 84 (349)
T 1a2o_A 80 VMVSS 84 (349)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87763
No 268
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=62.64 E-value=18 Score=28.02 Aligned_cols=72 Identities=10% Similarity=0.168 Sum_probs=40.2
Q ss_pred CeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
..|.++-. ...|-. .+.+.+++.|+.+.+...+. +.+ .+...++||||+.+... .....+.+
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdGiI~~~~~~----~~~~~~~l 145 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAY-SPEREEQLVETMLRRRPEAMVLSYDGH----TEQTIRLL 145 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTCCSEEEEECSCC----CHHHHHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCCCC----CHHHHHHH
Confidence 45777732 222322 35667778999998876542 221 12235899999976532 11222223
Q ss_pred HHhCCCCCEEEE
Q 031223 92 LELGPTVPLFGV 103 (163)
Q Consensus 92 ~~~~~~~PvLGI 103 (163)
. ..++|+.-+
T Consensus 146 ~--~~~iPvV~i 155 (355)
T 3e3m_A 146 Q--RASIPIVEI 155 (355)
T ss_dssp H--HCCSCEEEE
T ss_pred H--hCCCCEEEE
Confidence 2 356887765
No 269
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=62.32 E-value=40 Score=25.15 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCH--HHHhc-cCCCEEEeCCCCCCCCCChhH
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV--EELKR-KNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~--~~~~~-~~~dgvvl~GG~~~~~d~~~~ 87 (163)
++.-.+-+... .+.+|++|.........+.+.....|..+..-++--..+ ..+.. ..||.+|+.. +..+
T Consensus 56 L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~D----p~~e--- 127 (208)
T 1vi6_A 56 IRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVND----PAID--- 127 (208)
T ss_dssp HHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESC----TTTT---
T ss_pred HHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEEC----CCcc---
Confidence 33333334444 567899998755555566677777888765433311111 01111 3689999853 2222
Q ss_pred HHHHHHh-CCCCCEEEEe
Q 031223 88 LQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 88 ~~~i~~~-~~~~PvLGIC 104 (163)
...+++. .-++|+.|+|
T Consensus 128 ~~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 128 KQAVSEATAVGIPVVALC 145 (208)
T ss_dssp HHHHHHHHHTTCCEEEEE
T ss_pred hhHHHHHHHhCCCEEEEe
Confidence 3445553 4579999999
No 270
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=62.16 E-value=39 Score=24.63 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=29.9
Q ss_pred CeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCC
Q 031223 25 NPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG 77 (163)
.+|.++-. .+.|-.. +.+.+++.|+.+.+...+... .+.+...++||+|+.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESS
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 35666632 2234333 456677789988776543211 11222357999999765
No 271
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=62.09 E-value=17 Score=25.31 Aligned_cols=79 Identities=8% Similarity=-0.085 Sum_probs=42.0
Q ss_pred CeEEEEECC-CChHHHHHHHHHH-cCCEEEEEe-CCC--C--------------------CHHHH-----hccCCCEEEe
Q 031223 25 NPIIVIDNY-DSFTYNLCQYMGE-LGYHFEVYR-NDE--L--------------------TVEEL-----KRKNPRGVLI 74 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~~~~~l~~-~G~~~~v~~-~~~--~--------------------~~~~~-----~~~~~dgvvl 74 (163)
++|+||=+- .+.+..+++.+.+ .|.+..-+. ... . ..+++ +..+||.|||
T Consensus 5 ~kilIvY~S~tG~T~~vA~~Ia~~l~~~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yd~iil 84 (162)
T 3klb_A 5 RKILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYEVLFV 84 (162)
T ss_dssp SCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHHHhCCCeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhCCEEEE
Confidence 468888542 3478888888855 576643221 100 0 00001 1137999998
Q ss_pred CCCCCCCCC-ChhHHHHHHHh-CCCCCEEEEe
Q 031223 75 SPGPGAPQD-SGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 75 ~GG~~~~~d-~~~~~~~i~~~-~~~~PvLGIC 104 (163)
|.|--... ...+.+++.+. -+++++.-+|
T Consensus 85 -G~P~~~g~~~~~~~~fl~~~~l~gk~v~~f~ 115 (162)
T 3klb_A 85 -GFPVWWYIAPTIINTFLESYDFAGKIVVPFA 115 (162)
T ss_dssp -EEECBTTBCCHHHHHHHHTSCCTTCEEEEEE
T ss_pred -EcccccCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 55432222 23456667664 2567776665
No 272
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=62.09 E-value=15 Score=27.41 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
..+|.++- ..+.|-.. +.+++++.|+++.++.....+.+ .+...++||||+.+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34677773 22234333 55667778988875532222221 122357999999764
No 273
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=62.08 E-value=23 Score=25.70 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=22.2
Q ss_pred cCCCCCeEEEEEC---CCChHHHHHHHHHH---cCCEEE-EEe
Q 031223 20 SKNNKNPIIVIDN---YDSFTYNLCQYMGE---LGYHFE-VYR 55 (163)
Q Consensus 20 ~~~~~~~Ilvid~---~~~~~~~~~~~l~~---~G~~~~-v~~ 55 (163)
++|.+|||++|.. ..|++..+.+++.+ .|++++ ++.
T Consensus 2 ~~M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~id 44 (199)
T 4hs4_A 2 TTTSPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGS 44 (199)
T ss_dssp ---CCEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCC
T ss_pred CCCCCCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEe
Confidence 3455689999954 24677777777755 366777 543
No 274
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=62.02 E-value=4.8 Score=30.95 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCEEEEEeCCC------CCHHHHhccCCCEEEeCC
Q 031223 39 NLCQYMGELGYHFEVYRNDE------LTVEELKRKNPRGVLISP 76 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~------~~~~~~~~~~~dgvvl~G 76 (163)
.+.++|+..|++++.++.+. .+.+++. +||.||++.
T Consensus 37 ~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~--~yDvIIl~d 78 (248)
T 3soz_A 37 YLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALA--CYDAIVISD 78 (248)
T ss_dssp HHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHH--TCSEEEEES
T ss_pred HHHHHHhcCCceeEEeCchhhhhhCCCChHHHh--cCCEEEEcC
Confidence 38889999999999998752 1234444 899999963
No 275
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=61.86 E-value=69 Score=26.83 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=38.1
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC--HHHHh---------------ccCCCEEEeCCCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------RKNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~---------------~~~~dgvvl~GG~ 78 (163)
++|++|--+++--..+++.|.+.|+++.+.+....+ .+.+. ..++|.||+|+|-
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi 90 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAM 90 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTC
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCc
Confidence 579999888777777899999999998887643211 11111 1257999999885
No 276
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=61.75 E-value=50 Score=25.03 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=39.2
Q ss_pred CCeEEEEECCCC-hHHH----HHHHHHHc-CCEEEEEeCCCCCH-------HHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVIDNYDS-FTYN----LCQYMGEL-GYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~~~~-~~~~----~~~~l~~~-G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.++-.... |... +.+.+++. |+.+.+.... .+. +.+...++||||+.+.. .....+.
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~-----~~~~~~~ 79 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAG-DDNSKQAEDVHYFMDEGVDLLIISANE-----AAPMTPI 79 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSS-----HHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-----HHHHHHH
Confidence 456777743322 3333 44556667 9998887653 222 12223589999997642 1111233
Q ss_pred HHHh-CCCCCEEEE
Q 031223 91 VLEL-GPTVPLFGV 103 (163)
Q Consensus 91 i~~~-~~~~PvLGI 103 (163)
++++ +.++|+..+
T Consensus 80 ~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 80 VEEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCeEEEe
Confidence 3333 356777654
No 277
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=61.62 E-value=15 Score=25.71 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=45.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
+.+|+|+|........+.+.|...|+.+....... +.+ ...||.||+-=. .+...+.+.+.+++.....|++-+
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~---~al-~~~~dlvl~D~~--mp~~~g~l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP---EAF-DVPVDVVFTSIF--QNRHHDEIAALLAAGTPRTTLVAL 85 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC---SSC-SSCCSEEEEECC--SSTHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCch---hhC-CCCCCEEEEeCC--CCccchHHHHHHhccCCCCCEEEE
Confidence 46899999766567778888988899877554321 122 236887776211 121112244444443367888877
Q ss_pred eh
Q 031223 104 CM 105 (163)
Q Consensus 104 C~ 105 (163)
.-
T Consensus 86 t~ 87 (196)
T 1qo0_D 86 VE 87 (196)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 278
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=61.55 E-value=51 Score=25.04 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 23 NKNPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 23 ~~~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
...+|.++- ....|-.. +.+.+++.|+.+.+...+. +. +.+...++||||+.+...+ . +
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~---~ 130 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQ-NQDKELHLLNNMLGKQVDGIIFMSGNVT----E---E 130 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHTSCCSSCCEEECCSSCC----H---H
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCC-ChHHHHHHHHHHHhCCCcEEEEecCCCC----H---H
Confidence 345677773 33344333 5566777899988876431 11 1122347999999775321 1 2
Q ss_pred HHHHh-CCCCCEEEEe
Q 031223 90 TVLEL-GPTVPLFGVC 104 (163)
Q Consensus 90 ~i~~~-~~~~PvLGIC 104 (163)
.+..+ ..++|+.-+.
T Consensus 131 ~~~~l~~~~iPvV~~~ 146 (332)
T 2hsg_A 131 HVEELKKSPVPVVLAA 146 (332)
T ss_dssp HHHHHTTSSSCEEEES
T ss_pred HHHHHHhCCCCEEEEc
Confidence 33333 3567776553
No 279
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=60.25 E-value=36 Score=26.09 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=40.1
Q ss_pred CCeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.+|-. ...|-. .+.+.+++.|+.+.+...+ .+.+ .+...++||||+.+... .+...+.
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~----~~~~~~~ 132 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEY----PEPLLAM 132 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSCC----CHHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHcCCCCEEEEeCCCC----ChHHHHH
Confidence 346777733 223433 3556677789998877653 2222 12235899999976532 1122333
Q ss_pred HHHhCCCCCEEEE
Q 031223 91 VLELGPTVPLFGV 103 (163)
Q Consensus 91 i~~~~~~~PvLGI 103 (163)
+.+ ..++|+.-+
T Consensus 133 l~~-~~~iPvV~~ 144 (340)
T 1qpz_A 133 LEE-YRHIPMVVM 144 (340)
T ss_dssp HHT-TTTSCEEEE
T ss_pred HHh-hCCCCEEEE
Confidence 332 146776644
No 280
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=59.71 E-value=55 Score=26.72 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=26.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+.+|+||-.+.+-.. .++.|.+.|+.+.+.+.
T Consensus 9 ~k~v~viG~G~sG~s-~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 9 NKKVLVLGLARSGEA-AARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TCEEEEECCTTTHHH-HHHHHHHTTCEEEEEES
T ss_pred CCEEEEEeeCHHHHH-HHHHHHhCCCEEEEEeC
Confidence 468999998766554 58999999999998865
No 281
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=59.44 E-value=50 Score=24.26 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCCeEEEEE----CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhH
Q 031223 23 NKNPIIVID----NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 23 ~~~~Ilvid----~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
...+|.++- ..+.|-.. +.+++++.|+.+.+.... .+.+ .+...++||||+.+...+ ...
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~ 92 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK-HSAEEERQAIQYLLDLRCDAIMIYPRFLS----VDE 92 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT-TSHHHHHHHHHHHHHTTCSEEEEECSSSC----HHH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEecCCCC----hHH
Confidence 345677773 23334333 556677789998877543 2221 222357999999765311 122
Q ss_pred HHHHHHhCCCCCEEEEe
Q 031223 88 LQTVLELGPTVPLFGVC 104 (163)
Q Consensus 88 ~~~i~~~~~~~PvLGIC 104 (163)
.+.+.+ ..++|+.-+.
T Consensus 93 ~~~l~~-~~~iPvV~~~ 108 (296)
T 3brq_A 93 IDDIID-AHSQPIMVLN 108 (296)
T ss_dssp HHHHHH-TCSSCEEEES
T ss_pred HHHHHh-cCCCCEEEEc
Confidence 222322 1568887653
No 282
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=59.07 E-value=52 Score=24.38 Aligned_cols=73 Identities=15% Similarity=0.028 Sum_probs=40.1
Q ss_pred eEEEEEC--CCChHHH----HHHHHHHcCC-EEEEEeCCCCCH-------HHHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 26 PIIVIDN--YDSFTYN----LCQYMGELGY-HFEVYRNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 26 ~Ilvid~--~~~~~~~----~~~~l~~~G~-~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
+|.+|-. .+.|-.. +.+.+++.|+ ++.+.... .+. +.+...++||||+.+... ....+.+
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~~~-----~~~~~~~ 77 (309)
T 2fvy_A 4 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ-NDQSKQNDQIDVLLAKGVKALAINLVDP-----AAAGTVI 77 (309)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCSSG-----GGHHHHH
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCc-----chhHHHH
Confidence 5666632 2234333 5566677898 88777643 222 122235899999976421 1122334
Q ss_pred HHh-CCCCCEEEEe
Q 031223 92 LEL-GPTVPLFGVC 104 (163)
Q Consensus 92 ~~~-~~~~PvLGIC 104 (163)
+++ +.++|+..+.
T Consensus 78 ~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 78 EKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHTTTCCEEEES
T ss_pred HHHHHCCCcEEEec
Confidence 443 4678887654
No 283
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=58.96 E-value=54 Score=24.50 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=31.2
Q ss_pred CeEEEEECCCC--hHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 25 NPIIVIDNYDS--FTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~~~~--~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
.+|.++-...+ |... +.+.+++.|+.+.+.... .+.+ .+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQ-QKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 46777744322 3322 556677789998887643 2221 122348999999764
No 284
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=58.63 E-value=20 Score=27.29 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=29.7
Q ss_pred CeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 25 NPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
.+|.++-. ...|-. .+.+++++.|+++.+..+...+. +.+...++|+||+.+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 46777732 222332 35566777899887752211222 1222358999999654
No 285
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=58.32 E-value=30 Score=23.99 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=18.9
Q ss_pred CeEEEEECC---CChHHHHHHHHHHcCCEEEEE
Q 031223 25 NPIIVIDNY---DSFTYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 25 ~~Ilvid~~---~~~~~~~~~~l~~~G~~~~v~ 54 (163)
|+|++|... .+++..+.+++.+ +++++.+
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~ 35 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHI 35 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEE
Confidence 479999653 3688888888765 4444444
No 286
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=58.22 E-value=4.4 Score=29.53 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=43.0
Q ss_pred CeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL 101 (163)
++|+|||....+...+.+.|...| +.+.....+.. ..+.+....||.+|+-=. .+... -.+.+.+++.....|++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVR--LPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSE--ETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHHhCCCCcEE
Confidence 579999976556667888888776 55332222200 112222347998887211 11111 13455555545568988
Q ss_pred EEeh
Q 031223 102 GVCM 105 (163)
Q Consensus 102 GIC~ 105 (163)
-+.-
T Consensus 80 ~lt~ 83 (225)
T 3c3w_A 80 ILTS 83 (225)
T ss_dssp EGGG
T ss_pred EEEC
Confidence 7653
No 287
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=57.59 E-value=29 Score=21.89 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=30.0
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~ 54 (163)
.++..+.+.........+|++....+.........|++.|+++..+
T Consensus 41 ip~~~l~~~~~~l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l 86 (103)
T 3eme_A 41 IPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNV 86 (103)
T ss_dssp CCGGGGGGCGGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEE
T ss_pred cCHHHHHHHHHhCCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEe
Confidence 4555566666555555667777665555666788888899854443
No 288
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=57.32 E-value=10 Score=30.69 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=44.5
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCCEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL 101 (163)
.+|+|||........+...|...|+.+..........+.+....||.|++-= ..|...+ ++.+.+++. ...+|++
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~--~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDV--MMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcC--CCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4799998876777788888988888776553211112222234688777611 1122122 344555552 2467887
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+-
T Consensus 80 ~lt 82 (459)
T 1w25_A 80 LIT 82 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 289
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=57.28 E-value=11 Score=28.89 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccC--CCEEEeCCC
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKN--PRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~--~dgvvl~GG 77 (163)
..+|.+|-. .+.|-.. +.+.+++.|+.+.+.... .+.+ .+...+ +||||+.+.
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~-~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTE-GSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECT-TCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCC-CCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 346777732 2233333 556777789998887653 2221 122347 999999764
No 290
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=57.27 E-value=28 Score=27.70 Aligned_cols=72 Identities=18% Similarity=0.374 Sum_probs=37.9
Q ss_pred CCeEEEEEC-CCChHHH----HHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-C
Q 031223 24 KNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G 95 (163)
Q Consensus 24 ~~~Ilvid~-~~~~~~~----~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~ 95 (163)
..+|.||-. .+.|-.. +.+++++.|+.+.+...+.. ..+.+...++||||+.. .+ .+.++.+ +
T Consensus 25 s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~-----~~----~~~~~~l~~ 95 (412)
T 4fe7_A 25 RHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF-----DD----KQIEQALAD 95 (412)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET-----TC----HHHHHHHTT
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec-----CC----hHHHHHHhh
Confidence 345777633 2224333 55667778999888764321 12334345899999921 11 2234443 4
Q ss_pred CCCCEEEEe
Q 031223 96 PTVPLFGVC 104 (163)
Q Consensus 96 ~~~PvLGIC 104 (163)
.++|+.-|.
T Consensus 96 ~~iPvV~i~ 104 (412)
T 4fe7_A 96 VDVPIVGVG 104 (412)
T ss_dssp CCSCEEEEE
T ss_pred CCCCEEEec
Confidence 678987664
No 291
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=57.20 E-value=48 Score=24.88 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=32.1
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
+.+++++.|+.+.+......+.+ .+...++||||+.+... .. ..+.++++ +.++|+..+
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~---~~~~~~~~~~~~iPvV~~ 88 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDP--TA---VIPTIKKALEMGIPVVTL 88 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSST--TT---THHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh--HH---HHHHHHHHHHCCCeEEEe
Confidence 55667778999887643222221 12235899999976421 11 12223332 356777655
No 292
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=56.73 E-value=54 Score=23.78 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=31.9
Q ss_pred CeEEEEE--CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCC
Q 031223 25 NPIIVID--NYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid--~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~ 78 (163)
.+|.++- ..+.|... +.+.+++.|+.+.+...+. +.+ .+...++||+|+.+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD-QPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 3566663 22234333 5567777899998887542 221 1223589999997753
No 293
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=56.66 E-value=45 Score=24.93 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=39.8
Q ss_pred CCeEEEEECC-------CChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCCh
Q 031223 24 KNPIIVIDNY-------DSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 24 ~~~Ilvid~~-------~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~ 85 (163)
..+|.+|-.. ..|-.. +.+.+++.|+.+.+...+ .+.+ .+...++||||+.+...+ .
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~ 96 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSE-NSGDLYHEVKTMIQSKSVDGFILLYSLKD----D 96 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCS-SHHHHHHHHHHHHHTTCCSEEEESSCBTT----C
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCcCC----c
Confidence 4568777332 223333 556677789998876543 1111 122358999999875321 1
Q ss_pred hHHHHHHHhCCCCCEEEE
Q 031223 86 ISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 86 ~~~~~i~~~~~~~PvLGI 103 (163)
...+.++ ..++|+.-+
T Consensus 97 ~~~~~l~--~~~iPvV~i 112 (305)
T 3huu_A 97 PIEHLLN--EFKVPYLIV 112 (305)
T ss_dssp HHHHHHH--HTTCCEEEE
T ss_pred HHHHHHH--HcCCCEEEE
Confidence 2223333 245776654
No 294
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=56.56 E-value=59 Score=24.54 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=51.5
Q ss_pred CCCCeEEEEEC----CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCCCCCCCC-ChhHHHHHH
Q 031223 22 NNKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQD-SGISLQTVL 92 (163)
Q Consensus 22 ~~~~~Ilvid~----~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG~~~~~d-~~~~~~~i~ 92 (163)
....+|++.-- ++--...+...|+..|+++..+..+ .+.+++ ...++|.|.+|........ ...+.+.++
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 34456777632 2212334667889999999877654 344444 2358999999876321111 122344444
Q ss_pred HhCCCCCEEEEehH-HHHHHHHhCCeeee
Q 031223 93 ELGPTVPLFGVCMG-LQCIGEAFGGKIVR 120 (163)
Q Consensus 93 ~~~~~~PvLGIC~G-~QlLa~a~Gg~v~~ 120 (163)
+...++|++-=... -|-++...|+....
T Consensus 200 ~~~~~~~v~vGG~~~~~~~~~~igad~~~ 228 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVNQDFVSQFALGVYG 228 (258)
T ss_dssp TTTCCCCEEEESTTCCHHHHHTSTTEEEC
T ss_pred hcCCCCcEEEECccCCHHHHHHcCCeEEE
Confidence 43334665432111 14445555665443
No 295
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=56.18 E-value=47 Score=24.54 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=23.7
Q ss_pred HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+..... +.+ .+...++||||+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 23 AEEKAKELGYKIIVEDSQN-DSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHhcCcEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566777899988776432 221 122357999999753
No 296
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=56.05 E-value=36 Score=25.39 Aligned_cols=39 Identities=8% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~ 78 (163)
+.+.+++.|+.+.+...+... .+.+...++||||+.+..
T Consensus 34 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 34 ISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp HHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred HHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 556677789998776543111 111223589999998653
No 297
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=55.49 E-value=20 Score=26.77 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~ 98 (163)
...+|+|+|........+...|+..|+.+..........+.+... .+|.|++ -= ..|...+ ++.+.+++. ...+
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvll-D~-~mP~~dG~~l~~~lr~~~~~~~~ 200 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLV-DY-YMPEIDGISLVRMLRERYSKQQL 200 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEE-CS-CCSSSCHHHHHHHHHHHCCTTTS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEE-cC-CCCCCCHHHHHHHHHhccCCCCC
Confidence 457899998755556667788888888776553211112222222 3676665 21 1122222 355666663 3468
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|++.+.
T Consensus 201 ~ii~~s 206 (259)
T 3luf_A 201 AIIGIS 206 (259)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888765
No 298
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=55.10 E-value=25 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCeEEEEE--CCCChHH----HHHHHHHHcCCEEEEEeCCCC-----CHHHHhccCCCEEEeCCC
Q 031223 23 NKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPG 77 (163)
Q Consensus 23 ~~~~Ilvid--~~~~~~~----~~~~~l~~~G~~~~v~~~~~~-----~~~~~~~~~~dgvvl~GG 77 (163)
...+|.++- ..+.|-. .+.+.+++.|+.+.+...+.. ..+.+...++|||| .+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecC
Confidence 345677773 2233433 355677778999988765411 12333345899999 554
No 299
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=54.94 E-value=16 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=23.7
Q ss_pred HHHHHHHcCCEEEEEe--CCCCCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYR--NDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~--~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+.. .+ .+. +.+...++||||+.+.
T Consensus 23 i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 23 IEDEAKTLGVSVDIFASPSE-GDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp HHHHHHHHTCCEEEEECSST-TCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred HHHHHHHcCCEEEEeCCCCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5566777899988776 32 221 1222347999999764
No 300
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=54.21 E-value=36 Score=27.21 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=35.2
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCCCCCCCCCh
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~ 85 (163)
.|++||-...+ +...+.+.|++.|+++.+++.- ..+.+.+ ...++|.||=.|| +++.|..
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~A 114 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFA 114 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHH
Confidence 57887742212 4466778888889988776521 1233332 2347899995566 4444443
No 301
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=53.75 E-value=33 Score=22.56 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=28.5
Q ss_pred CCCeEEEE-ECCCChH----HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 23 NKNPIIVI-DNYDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 23 ~~~~Ilvi-d~~~~~~----~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
..++|+++ ..|-+.. ..+.+.+.+.|+++++........+.. ..++|.||.+.-
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~-~~~~DlIist~~ 78 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY-MDGVHLICTTAR 78 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTS-TTSCSEEEESSC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhc-cCCCCEEEECCc
Confidence 34567777 4443432 235567777888765544321222221 136896666443
No 302
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=53.75 E-value=10 Score=29.35 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG 77 (163)
..+|.+|-. .+.|-.. +.+.+++.|+.+.+...+. .. +.+...++||||+.+.
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 345777732 2234333 5567777899998887653 11 1122348999999876
No 303
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=53.49 E-value=27 Score=21.97 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=28.9
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~ 54 (163)
.++..+.+.........+|++....+.........|++.|+++..+
T Consensus 41 ip~~~l~~~~~~l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l 86 (100)
T 3foj_A 41 IPMNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNV 86 (100)
T ss_dssp CCGGGGGGCGGGSCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEE
T ss_pred CCHHHHHHHHHhCCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEe
Confidence 4555666666555556667777654434556778888899844433
No 304
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=53.41 E-value=15 Score=23.91 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=39.3
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI 103 (163)
.+|+|+|........+...|... +.+............+....+|.+|+-=. .+... -++.+.+++.....|++-+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIICDQR--MPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEEESC--CSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 36999987544555667777653 65543321100112222346887776211 11112 2345556654456787766
Q ss_pred e
Q 031223 104 C 104 (163)
Q Consensus 104 C 104 (163)
.
T Consensus 79 s 79 (139)
T 2jk1_A 79 T 79 (139)
T ss_dssp E
T ss_pred e
Confidence 4
No 305
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=53.28 E-value=41 Score=25.90 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC---CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL- 94 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~---~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~- 94 (163)
.....+.+|++|.........+.+.....|..+..-++--. +.....-..||.||+..- ..+ ...|++.
T Consensus 99 ~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp----~~e---~~AI~EA~ 171 (253)
T 3bch_A 99 VAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDP----RAD---HQPLTEAS 171 (253)
T ss_dssp HTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCT----TTT---HHHHHHHH
T ss_pred HHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECC----Ccc---chHHHHHH
Confidence 33334567999976433344566666777877654333110 111111136899998532 222 3445553
Q ss_pred CCCCCEEEEe
Q 031223 95 GPTVPLFGVC 104 (163)
Q Consensus 95 ~~~~PvLGIC 104 (163)
.-++|+.|||
T Consensus 172 ~lgIPvIalv 181 (253)
T 3bch_A 172 YVNLPTIALC 181 (253)
T ss_dssp HTTCCEEEEE
T ss_pred HhCCCEEEEE
Confidence 4569999998
No 306
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=53.27 E-value=40 Score=23.96 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=38.9
Q ss_pred CCeEEEEECC-CChHHHHHHHHHH-cCCEEEEEeC-CCCCH---HHHhccCCCEEEeCCCCCCCCC-ChhHHHHHHHh--
Q 031223 24 KNPIIVIDNY-DSFTYNLCQYMGE-LGYHFEVYRN-DELTV---EELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL-- 94 (163)
Q Consensus 24 ~~~Ilvid~~-~~~~~~~~~~l~~-~G~~~~v~~~-~~~~~---~~~~~~~~dgvvl~GG~~~~~d-~~~~~~~i~~~-- 94 (163)
.++|+||-.- .+++..+++++.+ ++....-+.. ++.+. +++. ++|+||| |.|--... ...+..++.++
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~v~~~~~~~~~~~~~l~--~~D~ii~-gsP~y~g~~~~~~k~fld~~~~ 82 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALD--AADAIIF-GTPTYMGGPSWQFKKFADASSK 82 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCHHHHHHHH--HCSEEEE-EEEEETTEECHHHHHHHHHTHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHhhhcceEeeecCCCCHhHHHHHH--HCCEEEE-EeCccCCCccHHHHHHHHHhhh
Confidence 3678888542 2467777777654 3332211111 11221 2333 7999999 55431111 22344444332
Q ss_pred ------CCCCCEEEEeh
Q 031223 95 ------GPTVPLFGVCM 105 (163)
Q Consensus 95 ------~~~~PvLGIC~ 105 (163)
-+++|+..++-
T Consensus 83 ~~~~~~l~gK~~~~f~s 99 (193)
T 3d7n_A 83 PWFSAKWQDKVFGGFTN 99 (193)
T ss_dssp HHHTTTTTTCEEEEEEE
T ss_pred hccccccCCCEEEEEEE
Confidence 25678775543
No 307
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=53.21 E-value=25 Score=26.07 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=39.2
Q ss_pred CCeEEEEEC---CCChHHH----HHHHHHHcCCEEEEEeC--CCCC----HHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVIDN---YDSFTYN----LCQYMGELGYHFEVYRN--DELT----VEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~---~~~~~~~----~~~~l~~~G~~~~v~~~--~~~~----~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.|+-. ...|-.. +.+.+++.|+.+.+... +... .+.+...++||||+.+.. .. ....
T Consensus 11 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~-~~~~ 84 (289)
T 3g85_A 11 KPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-----NY-DLEY 84 (289)
T ss_dssp CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-----HH-HHHH
T ss_pred CceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-----cc-cHHH
Confidence 345776632 2234333 55677778988776532 1111 122233579999997642 11 1222
Q ss_pred HHHhCCCCCEEEE
Q 031223 91 VLELGPTVPLFGV 103 (163)
Q Consensus 91 i~~~~~~~PvLGI 103 (163)
.+....++|+.-+
T Consensus 85 ~~~~~~~iPvV~~ 97 (289)
T 3g85_A 85 LNKASLTLPIILF 97 (289)
T ss_dssp HHHCCCSSCEEEE
T ss_pred HHhccCCCCEEEE
Confidence 3334567888755
No 308
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=53.19 E-value=56 Score=23.66 Aligned_cols=36 Identities=8% Similarity=-0.065 Sum_probs=25.2
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
|.+..+|++|-.+......+.+...+.+.++.++..
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~ 36 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTA 36 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEEC
Confidence 346678999987766666667777777777777654
No 309
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=53.11 E-value=14 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh------ccCCCEEEeCCCCC
Q 031223 34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEELK------RKNPRGVLISPGPG 79 (163)
Q Consensus 34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~------~~~~dgvvl~GG~~ 79 (163)
+++...+..+|++.|+++..+. .| +.+.+. ..++|.||.+||.+
T Consensus 210 Dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 210 ETNSIMLQGLVEKFFGEPILYGVLPD--DESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp CCHHHHHHHHHHHTTCEEEEEEEECS--CHHHHTTHHHHHHHCSEEEECC----
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 3455678899999999876432 23 223321 12699999999865
No 310
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=53.03 E-value=41 Score=23.60 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=29.0
Q ss_pred eEEEEEC-CCChHHHHHHHHHH-cC--CEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 26 PIIVIDN-YDSFTYNLCQYMGE-LG--YHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~~~~~l~~-~G--~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
+|+|+-. ..+++..+++.+.+ ++ +++++++....+.+++. ++|.|||
T Consensus 2 kilI~Y~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~iil 52 (179)
T 1yob_A 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETMSDALNVNRVSAEDFA--QYQFLIL 52 (179)
T ss_dssp CEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--TCSEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHHHhCCCCceEEEEhhhCCHHHHh--cCCEEEE
Confidence 5777733 23478888888865 33 34555654433445554 7999988
No 311
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=52.74 E-value=34 Score=25.11 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=30.7
Q ss_pred CeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCC
Q 031223 25 NPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~G 76 (163)
.+|.++-. .+.|... +.+.+++.|+.+.+...+. +.+ .+...++||||+.+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 45777732 2234333 5566777899998887542 221 12235899999977
No 312
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=52.32 E-value=30 Score=22.20 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=29.1
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~ 54 (163)
.++..+.++.+......+|++....+.........|++.|+++..+
T Consensus 40 ip~~~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l 85 (108)
T 3gk5_A 40 IPISELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDV 85 (108)
T ss_dssp CCHHHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEE
T ss_pred cCHHHHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEE
Confidence 4566666666666555667777654334555777888888844443
No 313
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=51.47 E-value=77 Score=24.04 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCeEEEEEC----CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN----YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~----~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
..+|.++-. ...|-.. +.+.+++.|+.+.+...+. +.+ .+...++||||+.+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKH-SAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTT-SHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 345777632 3334333 5567778999998887542 221 122358999999775
No 314
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=51.45 E-value=35 Score=23.91 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=43.4
Q ss_pred CCCeEEEE----ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCC-CChhHHHHHHH
Q 031223 23 NKNPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVLE 93 (163)
Q Consensus 23 ~~~~Ilvi----d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~-d~~~~~~~i~~ 93 (163)
...+|++- |-++--...+...|+..|+++..+..+ .+.+++. ..++|.|.+|....... ....+.+.+++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 44566666 222212334667889999999877654 4555542 35899999976532110 11223445555
Q ss_pred hC-CCCCEE
Q 031223 94 LG-PTVPLF 101 (163)
Q Consensus 94 ~~-~~~PvL 101 (163)
.. +++|++
T Consensus 96 ~g~~~i~v~ 104 (161)
T 2yxb_A 96 LGADDIPVV 104 (161)
T ss_dssp TTCTTSCEE
T ss_pred cCCCCCEEE
Confidence 32 346654
No 315
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=51.20 E-value=17 Score=24.39 Aligned_cols=34 Identities=9% Similarity=-0.066 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.+.+|+|+-.+ .+-..+.+.|.+.|+++.++..+
T Consensus 6 ~~~~viIiG~G-~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 6 ICNHALLVGYG-RVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCSCEEEECCS-HHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEECcC-HHHHHHHHHHHHCCCCEEEEECC
Confidence 34578888763 46667888888889888888654
No 316
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=51.15 E-value=53 Score=22.47 Aligned_cols=78 Identities=12% Similarity=-0.017 Sum_probs=42.4
Q ss_pred CeEEEEEC-CCChHHHHHHHHHH-cCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCCh-hHHHHHHHh----C
Q 031223 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY-HFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG-ISLQTVLEL----G 95 (163)
Q Consensus 25 ~~Ilvid~-~~~~~~~~~~~l~~-~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~-~~~~~i~~~----~ 95 (163)
|+|+|+-. ..+++..+++.+.+ ++. ++++++....+.+++. ++|.||| |.|- .....+ ...+++..+ -
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~~v~~~~~~~~~~~~l~--~~d~ii~-g~p~y~~g~~p~~~~~fl~~l~~~~l 78 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLN--DYQYLII-GCPTLNIGELQSDWEGLYSELDDVDF 78 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCCGGGGG--GCSEEEE-EEEEETTTEECHHHHHHHTTGGGCCC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcCCcEEEEcccCCHHHHh--hCCEEEE-EEeeCCCCcCCHHHHHHHHHhhhcCc
Confidence 46788743 22467777777755 332 5677775433444454 7999998 4432 111122 233444432 1
Q ss_pred CCCCEEEEeh
Q 031223 96 PTVPLFGVCM 105 (163)
Q Consensus 96 ~~~PvLGIC~ 105 (163)
.++++.-+|.
T Consensus 79 ~~k~~~~f~t 88 (169)
T 1obo_A 79 NGKLVAYFGT 88 (169)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 5677776665
No 317
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=50.25 E-value=45 Score=26.25 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC---CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPT 97 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~ 97 (163)
..+.+|++|.........+.+.....|..+..-+.-- .+.....-..+|.||+..- ..+ ...|++. .-+
T Consensus 69 ~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp----~~e---~~AI~EA~~lg 141 (295)
T 2zkq_b 69 ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDP----RAD---HQPLTEASYVN 141 (295)
T ss_dssp SCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCT----TTT---HHHHHHHHHHT
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCC----Ccc---hhHHHHHHHhC
Confidence 3456799997643333445566667787665433210 1111111136899998532 222 2345553 345
Q ss_pred CCEEEEe
Q 031223 98 VPLFGVC 104 (163)
Q Consensus 98 ~PvLGIC 104 (163)
+|+.|||
T Consensus 142 IPvIalv 148 (295)
T 2zkq_b 142 LPTIALC 148 (295)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 9999998
No 318
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=50.21 E-value=35 Score=25.46 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCeEEEEE------CCC-ChHHHHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 24 KNPIIVID------NYD-SFTYNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid------~~~-~~~~~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
..+|.+|- ++. .+...+.+.+++.|+.+.+...+. +.+ .+...++||||+.+.
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGG-SSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34577772 122 233447778888999998887542 221 122358999999764
No 319
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=49.86 E-value=36 Score=23.13 Aligned_cols=66 Identities=17% Similarity=0.030 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCCC-ChhHHHHHHHhC-CCCCEEEEehHH
Q 031223 39 NLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQD-SGISLQTVLELG-PTVPLFGVCMGL 107 (163)
Q Consensus 39 ~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~d-~~~~~~~i~~~~-~~~PvLGIC~G~ 107 (163)
.+...|+..|+++..+-.+ .+.+++. ..++|.|.+|........ ...+.+.+++.. +++|+ ++-|.
T Consensus 22 ~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v--~vGG~ 93 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL--YVGGN 93 (137)
T ss_dssp HHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE--EEEES
T ss_pred HHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE--EEECC
Confidence 4667889999999866543 4455542 348999999876421111 123455566542 24665 44454
No 320
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=49.78 E-value=9.4 Score=28.68 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF 101 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL 101 (163)
..+|+|||........+.+.|.+ .|+.+...... .....+....||.+++ -= ..|. +.-++.+.+++ .+.|++
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~~-~~~~~~~~~~~dlvll-D~-~mP~~~G~~~~~~lr~--~~~pvi 78 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTL-EGARHCQGDEYVVALV-DL-TLPDAPSGEAVKVLLE--RGLPVV 78 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEESST-GGGTTCCTTTEEEEEE-ES-CBTTBTTSHHHHHHHH--TTCCEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEeChH-HHHHHhhcCCCcEEEE-eC-CCCCCCHHHHHHHHHh--CCCCEE
Confidence 46899998754455567777865 47766544221 1111222236777765 10 0111 11123444444 347877
Q ss_pred EEe
Q 031223 102 GVC 104 (163)
Q Consensus 102 GIC 104 (163)
-+-
T Consensus 79 ~lt 81 (259)
T 3luf_A 79 ILT 81 (259)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 321
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=49.57 E-value=46 Score=21.78 Aligned_cols=46 Identities=7% Similarity=-0.063 Sum_probs=30.9
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCCh--HHHHHHHHHHcCCEEEEE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSF--TYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~--~~~~~~~l~~~G~~~~v~ 54 (163)
.++..+.+.........+|++....+.. .......|++.|+++..+
T Consensus 56 ip~~~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l 103 (124)
T 3flh_A 56 MPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYEL 103 (124)
T ss_dssp CCHHHHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEe
Confidence 4566666666666556677777665444 567888899999974333
No 322
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=48.95 E-value=12 Score=30.44 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=26.4
Q ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
|.||..+|+|++.+ .....+.+.++++|+.+.++.
T Consensus 2 n~m~~~kiLI~g~g-~~a~~i~~aa~~~G~~~v~v~ 36 (446)
T 3ouz_A 2 NAMEIKSILIANRG-EIALRALRTIKEMGKKAICVY 36 (446)
T ss_dssp CTTCCCEEEECCCH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred CccccceEEEECCC-HHHHHHHHHHHHcCCEEEEEE
Confidence 45566789998743 456679999999999988763
No 323
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=48.07 E-value=68 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=21.0
Q ss_pred CeEEEEECC----CChHHHHHHH----HHHcC--CEEEEEeCC
Q 031223 25 NPIIVIDNY----DSFTYNLCQY----MGELG--YHFEVYRND 57 (163)
Q Consensus 25 ~~Ilvid~~----~~~~~~~~~~----l~~~G--~~~~v~~~~ 57 (163)
++|++|... .+++..+.+. +++.| .+++++...
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 478888543 2566665554 44555 888888754
No 324
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=47.81 E-value=15 Score=26.55 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=45.6
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHH----hccCCCEEEeCCCCCCCCCC-hhHHHHHHH-h
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDS-GISLQTVLE-L 94 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~-~ 94 (163)
+..++|+|||........+.+.|.. .|+.+.....+ ..+.+ ....||.||+-=. .|... -++.+.+++ .
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~--~~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~ 80 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFS--ELWLEENKPESRSIQMLVIDYS--RISDDVLTDYSSFKHIS 80 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGG--GHHHHTTCSGGGGCCEEEEEGG--GCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCC--cHHHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHHhh
Confidence 3456899998765567778888874 57766543222 12222 2236898887111 11111 134556666 5
Q ss_pred CCCCCEEEEeh
Q 031223 95 GPTVPLFGVCM 105 (163)
Q Consensus 95 ~~~~PvLGIC~ 105 (163)
..+.|++-+.-
T Consensus 81 ~~~~~ii~lt~ 91 (225)
T 3klo_A 81 CPDAKEVIINC 91 (225)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCCcEEEEEC
Confidence 56789887753
No 325
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=46.96 E-value=75 Score=25.34 Aligned_cols=65 Identities=15% Similarity=0.329 Sum_probs=38.3
Q ss_pred CeEEEEECCC------ChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCChhHHH
Q 031223 25 NPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 25 ~~Ilvid~~~------~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
.|++||-... ++...+.+.|++.|+++.+++.-+ .+.+.+ ...++|.||=.|| +++.|..+...
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 112 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKGIG 112 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHHHH
Confidence 5788883221 245567788888899887765221 223332 2347999995566 45555544433
Q ss_pred H
Q 031223 90 T 90 (163)
Q Consensus 90 ~ 90 (163)
.
T Consensus 113 ~ 113 (387)
T 3bfj_A 113 I 113 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 326
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=46.68 E-value=6.4 Score=32.78 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=34.8
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~ 79 (163)
+|+|+|+-.+ .+-..+++.|.+.|.++.++..+....+.+. .++|..++.|-+.
T Consensus 3 ~M~iiI~G~G-~vG~~la~~L~~~~~~v~vId~d~~~~~~~~-~~~~~~~i~Gd~~ 56 (461)
T 4g65_A 3 AMKIIILGAG-QVGGTLAENLVGENNDITIVDKDGDRLRELQ-DKYDLRVVNGHAS 56 (461)
T ss_dssp CEEEEEECCS-HHHHHHHHHTCSTTEEEEEEESCHHHHHHHH-HHSSCEEEESCTT
T ss_pred cCEEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HhcCcEEEEEcCC
Confidence 5788888764 4666788888888989988876522222222 2466666666544
No 327
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=46.62 E-value=70 Score=24.56 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=42.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC---CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~ 98 (163)
.+.+|++|.........+.+.....|..+..-+.-- .+.....-..||.||++.- .. -...|++. .-++
T Consensus 69 ~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp----~~---d~~ai~EA~~l~I 141 (252)
T 3u5c_A 69 NPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDP----RS---DAQAIKEASYVNI 141 (252)
T ss_dssp SGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCT----TT---THHHHHHHHTTTC
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCC----cc---chHHHHHHHHcCC
Confidence 456799997643334446666677887665433211 1111111136899998542 21 23445553 5679
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|+.|+|
T Consensus 142 P~Ial~ 147 (252)
T 3u5c_A 142 PVIALT 147 (252)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999999
No 328
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=46.33 E-value=55 Score=20.92 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=28.0
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~ 52 (163)
.++..+.++.........|+++-..+.......+.|++.|++..
T Consensus 41 ip~~~l~~~~~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~ 84 (103)
T 3iwh_A 41 IPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAV 84 (103)
T ss_dssp CCGGGGGGCGGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEE
T ss_pred CcccchhhhhhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 45566666666665666676665444445567778888888654
No 329
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=45.94 E-value=85 Score=22.93 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=39.6
Q ss_pred CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
..+|.++-. ...|-.. +.+.+++.|+.+.+...+ .+.+ .+...++||||+.+...+ ....+.
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~ 81 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEYP----EPLLAM 81 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSCCC----HHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCC-CChHHHHHHHHHHHhCCCCEEEEEeccCC----HHHHHH
Confidence 346777743 2223322 555667789998887653 2222 222357999999765321 223333
Q ss_pred HHHhCCCCCEEEE
Q 031223 91 VLELGPTVPLFGV 103 (163)
Q Consensus 91 i~~~~~~~PvLGI 103 (163)
+.+ ..++|+..+
T Consensus 82 l~~-~~~iPvV~~ 93 (289)
T 1dbq_A 82 LEE-YRHIPMVVM 93 (289)
T ss_dssp HHH-TTTSCEEEE
T ss_pred HHh-ccCCCEEEE
Confidence 432 245776654
No 330
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=45.90 E-value=12 Score=28.70 Aligned_cols=91 Identities=7% Similarity=0.079 Sum_probs=50.7
Q ss_pred CCCeEEEEECCCChH---HHHHHHHHHcCCEEEEEeCCC---CCHHHH----h-ccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223 23 NKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDE---LTVEEL----K-RKNPRGVLISPGPGAPQDSGISLQTV 91 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~---~~~~~~l~~~G~~~~v~~~~~---~~~~~~----~-~~~~dgvvl~GG~~~~~d~~~~~~~i 91 (163)
.+++|+|........ ..+.+.|++.|+++..+|.-. .+.+.+ . ..+||.||++-..+ ...+.+.+
T Consensus 20 ~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na----V~~~~~~l 95 (286)
T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA----VEAAELCL 95 (286)
T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH----HHHHHHHH
T ss_pred cCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH----HHHHHHHH
Confidence 447899997652222 578889999999988766421 122221 1 14799999965421 11111111
Q ss_pred -------------H-HhCCCCCEEEEehHHHHHHHHhCCee
Q 031223 92 -------------L-ELGPTVPLFGVCMGLQCIGEAFGGKI 118 (163)
Q Consensus 92 -------------~-~~~~~~PvLGIC~G~QlLa~a~Gg~v 118 (163)
+ .+ .+++++.|--+-.-..+.+|-.+
T Consensus 96 ~~~~~~~~~~~d~~~~l-~~~~i~aVG~~Ta~aL~~~G~~~ 135 (286)
T 1jr2_A 96 EQNNKTEVWERSLKEKW-NAKSVYVVGNATASLVSKIGLDT 135 (286)
T ss_dssp HHTTCHHHHHHHTHHHH-HHSEEEECSHHHHHHHHHTTCCC
T ss_pred HhccccccchhhHHHHh-ccCcEEEECHHHHHHHHHcCCCc
Confidence 1 12 24677776665444446778765
No 331
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.86 E-value=72 Score=24.65 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCCeEEEEECC---CChHHHHHH----HHHHcCCEEEEEeCCCCC------------HHHHhc--cCCCEEEeCCCCCC
Q 031223 22 NNKNPIIVIDNY---DSFTYNLCQ----YMGELGYHFEVYRNDELT------------VEELKR--KNPRGVLISPGPGA 80 (163)
Q Consensus 22 ~~~~~Ilvid~~---~~~~~~~~~----~l~~~G~~~~v~~~~~~~------------~~~~~~--~~~dgvvl~GG~~~ 80 (163)
+..+||++|..- .+++..+.+ .+++.|++++++...+.+ ..++.. ...|+||| +.|-=
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~-aSP~Y 134 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW-CSPER 134 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE-EEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE-EcCcc
Confidence 445789999542 356665554 445579999988654322 111111 26899999 44421
Q ss_pred CC-CChhHHHHHHHh---------CCCCCEEEEeh
Q 031223 81 PQ-DSGISLQTVLEL---------GPTVPLFGVCM 105 (163)
Q Consensus 81 ~~-d~~~~~~~i~~~---------~~~~PvLGIC~ 105 (163)
-. -...+..+|..+ -++||+.-|+-
T Consensus 135 n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~t 169 (279)
T 2fzv_A 135 HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQV 169 (279)
T ss_dssp TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEE
T ss_pred ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEE
Confidence 11 122334444332 14788776554
No 332
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=45.63 E-value=22 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=25.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
+|+|+|+..+ ....+.++++++|+++.++.++
T Consensus 2 ~m~Ililg~g--~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--hHHHHHHHHHhCCCEEEEEECC
Confidence 5789999876 5556889999999998887653
No 333
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=45.38 E-value=33 Score=26.33 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
|+.+|+|++++. +.....+.+.|.+.|+++.+..
T Consensus 4 ~~~~mki~v~~~-~~~~~~~~~~L~~~g~~v~~~~ 37 (300)
T 2rir_A 4 MLTGLKIAVIGG-DARQLEIIRKLTEQQADIYLVG 37 (300)
T ss_dssp CCCSCEEEEESB-CHHHHHHHHHHHHTTCEEEEES
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEe
Confidence 355688999965 3455567788888999987764
No 334
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=45.20 E-value=40 Score=25.36 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=38.6
Q ss_pred CCeEEEEECCC-ChHH----HHHHHHHHcCC------EEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCCh
Q 031223 24 KNPIIVIDNYD-SFTY----NLCQYMGELGY------HFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 24 ~~~Ilvid~~~-~~~~----~~~~~l~~~G~------~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~ 85 (163)
+.+|.||..-. .|.. .+.+.+++.|+ .+.+...+ .+.+ .+...++||||++|.+
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~------- 79 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQ-GNPAIAVQIARQFVGENPDVLVGIATP------- 79 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEESHH-------
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECChH-------
Confidence 35677774322 2322 36677788898 44444433 2221 2223589999997642
Q ss_pred hHHHHHHHhCCCCCEEEEe
Q 031223 86 ISLQTVLELGPTVPLFGVC 104 (163)
Q Consensus 86 ~~~~~i~~~~~~~PvLGIC 104 (163)
.. ..+.....++|+.-+.
T Consensus 80 ~~-~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 80 TA-QALVSATKTIPIVFTA 97 (302)
T ss_dssp HH-HHHHHHCSSSCEEEEE
T ss_pred HH-HHHHhcCCCcCEEEEe
Confidence 11 1122235678887664
No 335
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=45.03 E-value=54 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=29.2
Q ss_pred HHHHHHHcCCEEEEEeCCCC------CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 40 LCQYMGELGYHFEVYRNDEL------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
+.+.+++.|+.+.+...... ..+.+...++||+|+.+...+ + +.++.+ +.++|+.-+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~~~~~~~iPvV~~~ 85 (276)
T 2h0a_A 21 IEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT--E-----RFEEGRLPTERPVVLVD 85 (276)
T ss_dssp HHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------------CCSCSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC--H-----HHHHHHhhcCCCEEEEe
Confidence 55666778998877643211 122233357999999775322 1 223343 4578887664
No 336
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.51 E-value=32 Score=26.57 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=30.5
Q ss_pred CeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223 25 NPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 77 (163)
Q Consensus 25 ~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG 77 (163)
.+|.+|-. .+.|-.. +.+.+++.|+.+.+...+ .+.+ .+...++||||+.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45777732 2233333 556677789998887653 2221 122357999999765
No 337
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.43 E-value=59 Score=25.75 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=39.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC---CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTV 98 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~---~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~ 98 (163)
.+.+|++|.........+.+.....|..+..-+.-- .+.....-..+|.||++. +..+ ...|++. .-++
T Consensus 74 ~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~D----p~~d---~qAI~EA~~lnI 146 (305)
T 3iz6_A 74 NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD----PRTD---HQPIKESALGNI 146 (305)
T ss_dssp SSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESC----TTTT---HHHHHHHHHHTC
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeC----cccc---hHHHHHHHHcCC
Confidence 345688886543233345556666787654322210 111111113689999853 2222 2344442 3459
Q ss_pred CEEEEe
Q 031223 99 PLFGVC 104 (163)
Q Consensus 99 PvLGIC 104 (163)
|+.|+|
T Consensus 147 PtIALv 152 (305)
T 3iz6_A 147 PTIAFC 152 (305)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999999
No 338
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=44.27 E-value=11 Score=28.69 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=25.5
Q ss_pred cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHH
Q 031223 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 107 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~ 107 (163)
.++|.||..||-+ .+...++.+..++|++||=.|.
T Consensus 40 ~~~D~vv~~GGDG------Tll~~a~~~~~~~PilGIn~G~ 74 (258)
T 1yt5_A 40 VTADLIVVVGGDG------TVLKAAKKAADGTPMVGFKAGR 74 (258)
T ss_dssp BCCSEEEEEECHH------HHHHHHTTBCTTCEEEEEESSS
T ss_pred CCCCEEEEEeCcH------HHHHHHHHhCCCCCEEEEECCC
Confidence 4799999999943 3556666642289999998773
No 339
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=44.16 E-value=52 Score=25.03 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=41.9
Q ss_pred hhhcCCCCCeEEEEECCCChHHHHHHHHHH-c-CCEEEEE------eCCCCCHHH-----------HhccCCCEEEeCCC
Q 031223 17 DKKSKNNKNPIIVIDNYDSFTYNLCQYMGE-L-GYHFEVY------RNDELTVEE-----------LKRKNPRGVLISPG 77 (163)
Q Consensus 17 ~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~-~-G~~~~v~------~~~~~~~~~-----------~~~~~~dgvvl~GG 77 (163)
|=+.||...+|.|+|-+-+-. .+.+.+.+ . ...+..+ |+-..+.++ +...++|+||+.=.
T Consensus 5 ~~~~~~~~~~IGv~DsG~Ggl-tv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCN 83 (273)
T 2oho_A 5 RGSHMMDTRPIGFLDSGVGGL-TVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACN 83 (273)
T ss_dssp TSSCBCCCCCEEEEESSSTTH-HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCH
T ss_pred CcccccCCCcEEEEeCCCcHH-HHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCc
Confidence 334454456799999875533 34555544 2 2333322 211122222 22347899998432
Q ss_pred CCCCCCChhHHHHHHHhCCCCCEEEEehH
Q 031223 78 PGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (163)
Q Consensus 78 ~~~~~d~~~~~~~i~~~~~~~PvLGIC~G 106 (163)
. ......+.+++. -++|++||.--
T Consensus 84 T----as~~~l~~lr~~-~~iPvigi~ep 107 (273)
T 2oho_A 84 T----ATAVAWEEVKAA-LDIPVLGVVLP 107 (273)
T ss_dssp H----HHHHHHHHHHHH-CSSCEEESHHH
T ss_pred h----HhHHHHHHHHHh-CCCCEEeccHH
Confidence 1 100124555553 24999997543
No 340
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=43.45 E-value=92 Score=26.13 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCeEEEEECCCChHH---HHHHHHHHc--CCEEEEEeCCCCCHHH---HhccCCCEEEeCCCCCCCCC--------ChhH
Q 031223 24 KNPIIVIDNYDSFTY---NLCQYMGEL--GYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQD--------SGIS 87 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~---~~~~~l~~~--G~~~~v~~~~~~~~~~---~~~~~~dgvvl~GG~~~~~d--------~~~~ 87 (163)
+..+++||....... .+++++++. +..+..-.. .+.+. +.....|+|++..|+++... .+.+
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v--~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~ 345 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNV--ATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQL 345 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEE--CSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeee--ccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcH
Confidence 345677765433222 244555543 333332222 22332 22347999999777766321 1111
Q ss_pred --HHHHHH-h-CCCCCEE---EEehHHHHH-HHHhCCeeee
Q 031223 88 --LQTVLE-L-GPTVPLF---GVCMGLQCI-GEAFGGKIVR 120 (163)
Q Consensus 88 --~~~i~~-~-~~~~PvL---GIC~G~QlL-a~a~Gg~v~~ 120 (163)
...+.+ . +.++|++ ||..+-++. |.++|+...-
T Consensus 346 ~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~ 386 (511)
T 3usb_A 346 TAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVM 386 (511)
T ss_dssp HHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhe
Confidence 222222 2 3469999 899999888 6788876544
No 341
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.04 E-value=99 Score=22.86 Aligned_cols=39 Identities=5% Similarity=0.158 Sum_probs=25.1
Q ss_pred HHHHHHHcCCEEEEEeCCCC-CH----HHHhccCCCEEEeCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDEL-TV----EELKRKNPRGVLISPGP 78 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~-~~----~~~~~~~~dgvvl~GG~ 78 (163)
+.+.+++.|+.+.+...+.. .. +.+...++||||+.+..
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 32 IGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp HHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred HHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 55677789999888764421 11 12223489999998764
No 342
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=42.88 E-value=18 Score=27.64 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCC---CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-C
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G 95 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~---~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~ 95 (163)
...+.+|++|.........+.+.....|..+. .-+.-- .+...-....||.||+.. +.. -...|++. .
T Consensus 63 i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~D----p~~---e~~ai~EA~~ 135 (241)
T 2xzm_B 63 VQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTD----PRS---DFQAIKEASY 135 (241)
T ss_dssp CSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESC----TTT---THHHHHHHTT
T ss_pred HhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEEC----CCc---chHHHHHHHH
Confidence 33456799887543333345555566776554 222110 011110113688888853 221 23456664 5
Q ss_pred CCCCEEEEeh
Q 031223 96 PTVPLFGVCM 105 (163)
Q Consensus 96 ~~~PvLGIC~ 105 (163)
-++|+.|+|-
T Consensus 136 l~IPvIalvD 145 (241)
T 2xzm_B 136 VNIPVIALCD 145 (241)
T ss_dssp TTCCEEECCC
T ss_pred hCCCEEEEec
Confidence 6899999983
No 343
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=42.44 E-value=36 Score=25.11 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=51.7
Q ss_pred CCeEEEE----ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCCCCh---hHHHHHH
Q 031223 24 KNPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDSG---ISLQTVL 92 (163)
Q Consensus 24 ~~~Ilvi----d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~d~~---~~~~~i~ 92 (163)
..+|++- |.++--...+...|+..|+++..+..+ .+.+++. ..++|.|.+||+........ .+.+.++
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD-VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS-CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC-CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 3566665 332222344667889999999877655 4555552 35899999955533322222 2344444
Q ss_pred HhC--CCCCEE--EEehHHHHHHHHhCCeeee
Q 031223 93 ELG--PTVPLF--GVCMGLQCIGEAFGGKIVR 120 (163)
Q Consensus 93 ~~~--~~~PvL--GIC~G~QlLa~a~Gg~v~~ 120 (163)
+.. .++|++ |...- |-.+...|+..+.
T Consensus 171 ~~~~~~~v~v~vGG~~~~-~~~a~~iGad~~~ 201 (215)
T 3ezx_A 171 EEKLRDSVKCMFGGAPVS-DKWIEEIGADATA 201 (215)
T ss_dssp HTTCGGGSEEEEESSSCC-HHHHHHHTCCBCC
T ss_pred HcCCCCCCEEEEECCCCC-HHHHHHhCCeEEE
Confidence 432 246653 22232 3455666665443
No 344
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=42.35 E-value=89 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=21.2
Q ss_pred CeEEEEECC---CChHHHHHHHHHH---cCCEEEEEeC
Q 031223 25 NPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid~~---~~~~~~~~~~l~~---~G~~~~v~~~ 56 (163)
+||++|... .|++..+.+++.+ .|.+++++..
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl 40 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSY 40 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCC
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 479999643 3567766666543 4778887754
No 345
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=41.95 E-value=38 Score=30.09 Aligned_cols=112 Identities=8% Similarity=0.049 Sum_probs=65.7
Q ss_pred hhhHhhHHhhhcCCCC--CeEEEEECC-----------------CChHHH--HHHHHHHcCCEEEEEeCCCCCHHHHhcc
Q 031223 9 ISKSLYLDDKKSKNNK--NPIIVIDNY-----------------DSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRK 67 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~--~~Ilvid~~-----------------~~~~~~--~~~~l~~~G~~~~v~~~~~~~~~~~~~~ 67 (163)
...|.+-++.++.... .+|+|++.- +++... +.++|..++++++.++.++....+. ..
T Consensus 421 ~EFR~i~~~~~~~p~~~~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdDI~e~e~-L~ 499 (759)
T 2zuv_A 421 NEFRDIHDRTGGVAAEGELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDDVLAHGI-DS 499 (759)
T ss_dssp HHHHHHHHHHTTCCCCCCSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHHHHHHCC-CT
T ss_pred HHHHHHHHhcCCCccccCceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHHhccccc-cc
Confidence 3455555666444322 689999542 121122 8889999999999998542211111 24
Q ss_pred CCCEEEeCCCCCCCCC------ChhHHHHHHHh-CCCCCEEEEeh-------H----HHHHHHHhCCeeeeCC
Q 031223 68 NPRGVLISPGPGAPQD------SGISLQTVLEL-GPTVPLFGVCM-------G----LQCIGEAFGGKIVRSP 122 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d------~~~~~~~i~~~-~~~~PvLGIC~-------G----~QlLa~a~Gg~v~~~~ 122 (163)
++|.||..|-..+..- .+...+.||++ .++--++||.- | +| ||..||.......
T Consensus 500 d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFq-LADVLGVd~e~g~ 571 (759)
T 2zuv_A 500 DIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQ-LADVIGVDEERYQ 571 (759)
T ss_dssp TCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEET-THHHHSEEECCSS
T ss_pred cCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCccccc-HHhhcCcccccCC
Confidence 8999997663433321 13456777874 45555555532 1 35 8888987766543
No 346
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=41.54 E-value=1.2e+02 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=20.5
Q ss_pred HHHHHHH-hCCCCCEEEEehHH---HHHHHHhCC
Q 031223 87 SLQTVLE-LGPTVPLFGVCMGL---QCIGEAFGG 116 (163)
Q Consensus 87 ~~~~i~~-~~~~~PvLGIC~G~---QlLa~a~Gg 116 (163)
..+.++. +..+.+++-++.|+ +.|...++.
T Consensus 85 ~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~ 118 (312)
T 3hn2_A 85 YEELIRPLVEEGTQILTLQNGLGNEEALATLFGA 118 (312)
T ss_dssp HHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG
T ss_pred HHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC
Confidence 3444544 35678899999887 467778874
No 347
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=41.29 E-value=71 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=26.2
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
|++.++|+|+..+ .....+.+.++++|+.+.++..
T Consensus 4 m~~~~~ilI~g~g-~~~~~~~~a~~~~G~~~v~v~~ 38 (403)
T 4dim_A 4 MYDNKRLLILGAG-RGQLGLYKAAKELGIHTIAGTM 38 (403)
T ss_dssp --CCCEEEEECCC-GGGHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEECCc-HhHHHHHHHHHHCCCEEEEEcC
Confidence 4456789999875 3466789999999999888753
No 348
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=41.12 E-value=83 Score=22.47 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCCeEEEEEC---CCChHHHHHHHHHH---cCCEEE-EEeCCCCC------------HHH---Hhc--cCCCEEEeCCCC
Q 031223 23 NKNPIIVIDN---YDSFTYNLCQYMGE---LGYHFE-VYRNDELT------------VEE---LKR--KNPRGVLISPGP 78 (163)
Q Consensus 23 ~~~~Ilvid~---~~~~~~~~~~~l~~---~G~~~~-v~~~~~~~------------~~~---~~~--~~~dgvvl~GG~ 78 (163)
..|||++|.- ..|++..+.+++.+ .|++++ ++...+.+ .++ +.. ...|+||+ +.|
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~-~sP 81 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVI-VTP 81 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEE-EEC
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEE-Eec
Confidence 4578999943 24677778887765 367777 54432111 011 111 26899999 544
Q ss_pred CCCC-CChh---HHHHHHH----hCCCCCEEEEeh--HH----------HHHHHHhCCeeeeC
Q 031223 79 GAPQ-DSGI---SLQTVLE----LGPTVPLFGVCM--GL----------QCIGEAFGGKIVRS 121 (163)
Q Consensus 79 ~~~~-d~~~---~~~~i~~----~~~~~PvLGIC~--G~----------QlLa~a~Gg~v~~~ 121 (163)
---. -... +.+++.. .-.+||+.-|+- |. .-+...+|+.+.+.
T Consensus 82 ~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~ 144 (193)
T 3svl_A 82 EYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNK 144 (193)
T ss_dssp CBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCS
T ss_pred ccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCC
Confidence 2111 1222 3444432 126788876653 31 12233578877654
No 349
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=40.86 E-value=1.1e+02 Score=23.91 Aligned_cols=67 Identities=22% Similarity=0.171 Sum_probs=41.3
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh-------c-cCCCEEE
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELK-------R-KNPRGVL 73 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~-------~-~~~dgvv 73 (163)
....+.-++.++..+..+.+++|.-++. |..+-.++.++.|+..+.+... ..+.+++. . .+.+||+
T Consensus 17 ~~~~~~~v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIl 96 (285)
T 3p2o_A 17 KEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGIL 96 (285)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 3455566666666555677777755433 4445566778899998877643 23333331 1 3689999
Q ss_pred e
Q 031223 74 I 74 (163)
Q Consensus 74 l 74 (163)
+
T Consensus 97 v 97 (285)
T 3p2o_A 97 V 97 (285)
T ss_dssp E
T ss_pred e
Confidence 6
No 350
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=40.56 E-value=27 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=23.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
++|+|+-.+ .+-..+.+.|.+.|+++.++..+
T Consensus 7 ~~v~I~G~G-~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSE-AAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCS-HHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCC-HHHHHHHHHHHHCCCeEEEEECC
Confidence 468888753 35556888888889888887654
No 351
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=40.38 E-value=64 Score=23.26 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=5.6
Q ss_pred HHHHHHHHHHcC
Q 031223 37 TYNLCQYMGELG 48 (163)
Q Consensus 37 ~~~~~~~l~~~G 48 (163)
+..+...|+.+|
T Consensus 104 TK~~~~~l~~l~ 115 (175)
T 2ftc_D 104 PQYLTELAHYRR 115 (175)
T ss_pred HHHHHHHHHHCC
Confidence 334445555544
No 352
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=40.05 E-value=1.1e+02 Score=22.58 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=42.8
Q ss_pred ccCCChhhHhhHHhhhcCCCCCe-EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-C--------HHHHhccCCCEEE
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNP-IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T--------VEELKRKNPRGVL 73 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-~--------~~~~~~~~~dgvv 73 (163)
+|.+=++...+.+..++...... ++||-+... ....++.++.|+++.++++... + .+.+...++|.+|
T Consensus 9 ~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~~~--a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv 86 (211)
T 3p9x_A 9 ASGSGTNAEAIIQSQKAGQLPCEVALLITDKPG--AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVV 86 (211)
T ss_dssp CCTTCHHHHHHHHHHHTTCCSSEEEEEEESCSS--SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EeCCchHHHHHHHHHHcCCCCcEEEEEEECCCC--cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEE
Confidence 57777888888888866554434 445544221 1344566778988876654211 1 1223446899888
Q ss_pred eCC
Q 031223 74 ISP 76 (163)
Q Consensus 74 l~G 76 (163)
+.|
T Consensus 87 ~ag 89 (211)
T 3p9x_A 87 LAG 89 (211)
T ss_dssp ESS
T ss_pred EeC
Confidence 855
No 353
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=39.92 E-value=51 Score=25.15 Aligned_cols=35 Identities=6% Similarity=0.140 Sum_probs=25.7
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
++.+|+|+|++. +.....+.+.|.+.|+++.+...
T Consensus 2 ~~~~m~i~v~~~-~~~~~~~~~~L~~~g~~v~~~~~ 36 (293)
T 3d4o_A 2 MLTGKHVVIIGG-DARQLEIIRKLSTFDAKISLVGF 36 (293)
T ss_dssp CCTTCEEEEECB-CHHHHHHHHHHHHTTCEEEEESC
T ss_pred CccCcEEEEECC-CHHHHHHHHHHHhCCCEEEEecc
Confidence 456788999964 34555677889899999877643
No 354
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=39.88 E-value=54 Score=25.83 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=40.1
Q ss_pred eEEEEECCCC---hHHHHHHHHHHcCCEEEEEe-CCCCCHHH---H---hccCCCEEEeCCCCCCCCCChhHHHHHHHhC
Q 031223 26 PIIVIDNYDS---FTYNLCQYMGELGYHFEVYR-NDELTVEE---L---KRKNPRGVLISPGPGAPQDSGISLQTVLELG 95 (163)
Q Consensus 26 ~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~-~~~~~~~~---~---~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~ 95 (163)
|++||-.... +...+.+.|++.|+++.++. ....+.+. + ...++|.||=.|| +++.|..+.... .
T Consensus 36 ~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~vA~----~ 110 (354)
T 3ce9_A 36 RVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAF----L 110 (354)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHH----H
T ss_pred eEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHhhhcCCCEEEEECC-hHHHHHHHHHHh----h
Confidence 7777743222 23346667777888876654 21123322 2 2247899995566 444444333332 2
Q ss_pred CCCCEEEEe
Q 031223 96 PTVPLFGVC 104 (163)
Q Consensus 96 ~~~PvLGIC 104 (163)
+++|+..|-
T Consensus 111 ~~~p~i~IP 119 (354)
T 3ce9_A 111 RKLPFISVP 119 (354)
T ss_dssp HTCCEEEEE
T ss_pred cCCCEEEec
Confidence 457777664
No 355
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=39.86 E-value=52 Score=25.07 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=29.5
Q ss_pred CCCCCeEEEEECCCChHHH-HHHHHHH-cCCEEE-EEeCCC---------------CCHHHHhccCCCEEEeCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYN-LCQYMGE-LGYHFE-VYRNDE---------------LTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~-~~~~l~~-~G~~~~-v~~~~~---------------~~~~~~~~~~~dgvvl~GG 77 (163)
+|+++||.||-.+ ..-.. +.+.|.. .++++. ++..+. .+.+++.. ++|.|++.-.
T Consensus 3 ~M~~~~igiIG~G-~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~-~~D~V~i~tp 75 (308)
T 3uuw_A 3 AMKNIKMGMIGLG-SIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAK-KCDCIFLHSS 75 (308)
T ss_dssp --CCCEEEEECCS-HHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHT-TCSEEEECCC
T ss_pred ccccCcEEEEecC-HHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHh-cCCEEEEeCC
Confidence 4456788888774 23333 5666655 456655 333221 12344433 7899998443
No 356
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=39.54 E-value=50 Score=25.45 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=24.0
Q ss_pred hhcCCCCCeEEEEECC-----CC---hHHHHHHHHHHcCCEEEEEeCC
Q 031223 18 KKSKNNKNPIIVIDNY-----DS---FTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 18 ~~~~~~~~~Ilvid~~-----~~---~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
++.....|||++|... ++ +...+.+.|.+.|+++.++...
T Consensus 14 ~~~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 61 (406)
T 2gek_A 14 LVPRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPA 61 (406)
T ss_dssp -------CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cccCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3444555889999643 11 3445888899999999988643
No 357
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=39.22 E-value=94 Score=22.34 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=34.7
Q ss_pred CCeEEEE----ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCC
Q 031223 24 KNPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvi----d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG 77 (163)
+.+|++. |.++--...+...|+..|+++..+..+ .+.+++. ..++|.|.+|..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~-vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD-IEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS-BCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecc
Confidence 4467666 322212444667889999999877654 4555542 348999999876
No 358
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=39.19 E-value=48 Score=25.65 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=24.0
Q ss_pred CCCCeEEEEECC---CChHHH----HHHHHHHcCCEEEEEeCC
Q 031223 22 NNKNPIIVIDNY---DSFTYN----LCQYMGELGYHFEVYRND 57 (163)
Q Consensus 22 ~~~~~Ilvid~~---~~~~~~----~~~~l~~~G~~~~v~~~~ 57 (163)
+..||||||... .|++.. +.+.+++.|.++++++..
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 456899999543 356554 445667789999998753
No 359
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=39.02 E-value=84 Score=23.11 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeCCCCCHHHHh---------------ccCCCEEEeCCCCCCC
Q 031223 24 KNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELK---------------RKNPRGVLISPGPGAP 81 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~~~~~~~~~~---------------~~~~dgvvl~GG~~~~ 81 (163)
.++|+|.- . ++.+ .+.+.|.+.|+++..+.-.......+. ..++|.||-+.|+...
T Consensus 5 ~~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~ 76 (286)
T 3ius_A 5 TGTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPDSG 76 (286)
T ss_dssp CCEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred cCcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcccc
Confidence 46799997 3 6655 488889888998877643211111110 1258999988886543
No 360
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=38.85 E-value=1.4e+02 Score=23.45 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=26.7
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
++++|+||..+ ..-..+.++++++|+++.++.++
T Consensus 11 ~~~~IlIlG~G-~lg~~la~aa~~lG~~viv~d~~ 44 (377)
T 3orq_A 11 FGATIGIIGGG-QLGKMMAQSAQKMGYKVVVLDPS 44 (377)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECC
Confidence 45679999753 46667999999999999888754
No 361
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=38.84 E-value=40 Score=22.65 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=38.9
Q ss_pred eEEEEEC-CCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC-CCCC----hhHHHHHHHh-
Q 031223 26 PIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS----GISLQTVLEL- 94 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~-~~d~----~~~~~~i~~~- 94 (163)
+++|+=. ..+++.. +.+.+.+.|+++++++.. +..++ .++|.+|+ |.|-- ..+. ..+.+.+...
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l--~~~d~vi~-g~pt~g~g~~p~~~~~f~~~l~~~~ 77 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDL--PASGIWLV-ISSTHGAGDIPDNLSPFYEALQEQK 77 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSS--CSEEEEEE-ECCTTTTCCTTSSCHHHHHHHHHHC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHc--ccCCeEEE-EECccCCCCCChhHHHHHHHHHhhc
Confidence 5666622 1224444 445555668888777532 22233 26888887 44321 1121 2234444332
Q ss_pred --CCCCCEEEEehHHH
Q 031223 95 --GPTVPLFGVCMGLQ 108 (163)
Q Consensus 95 --~~~~PvLGIC~G~Q 108 (163)
-+++++.-++.|-+
T Consensus 78 ~~l~~~~~avfg~G~~ 93 (147)
T 2hna_A 78 PDLSAVRFGAIGIGSR 93 (147)
T ss_dssp CCTTEEEEEEESCCHH
T ss_pred cccCCCEEEEEecccC
Confidence 14566666677765
No 362
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=38.73 E-value=1.1e+02 Score=22.36 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCeEEEEEC--CC--ChHHH----HHHHHHHcCCEEEEEeCCCC--CHHH----HhccCCCEEEeCCC
Q 031223 24 KNPIIVIDN--YD--SFTYN----LCQYMGELGYHFEVYRNDEL--TVEE----LKRKNPRGVLISPG 77 (163)
Q Consensus 24 ~~~Ilvid~--~~--~~~~~----~~~~l~~~G~~~~v~~~~~~--~~~~----~~~~~~dgvvl~GG 77 (163)
..+|.||-. .+ .|-.. +.+.+++.|+.+.+...+.. .... +...++||||+.+.
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 345777722 22 45444 44566678998887754311 1111 22358999999764
No 363
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=38.60 E-value=91 Score=23.79 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=39.9
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCC------CCCHHH-----------HhccCCCEEEeCCCCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRND------ELTVEE-----------LKRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~------~~~~~~-----------~~~~~~dgvvl~GG~~~~~ 82 (163)
|++...|.|+|.+-+-...+...++.+ ..++..+... ..+.++ +...++|+||+.=.-
T Consensus 4 ~~~~~pIgvfDSGvGGLtv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNT---- 79 (268)
T 3out_A 4 MLDNRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNT---- 79 (268)
T ss_dssp -CTTSCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHH----
T ss_pred cCCCCcEEEEECCCChHHHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCC----
Confidence 445567999998755443333333333 3445444321 122332 223478999993221
Q ss_pred CChhHHHHHHH-hCCCCCEEEEe
Q 031223 83 DSGISLQTVLE-LGPTVPLFGVC 104 (163)
Q Consensus 83 d~~~~~~~i~~-~~~~~PvLGIC 104 (163)
......+.+++ + .++|++||.
T Consensus 80 a~~~al~~lr~~~-~~iPvigii 101 (268)
T 3out_A 80 ISAIAKDIVQEIA-KAIPVIDVI 101 (268)
T ss_dssp HHHHHHHHHHHHH-TTSCEEEHH
T ss_pred hHHHHHHHHHHhc-CCCCEEecc
Confidence 11112355555 4 149999963
No 364
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=38.16 E-value=52 Score=25.30 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=35.4
Q ss_pred CeEEEEECCCC------hHH----HHHHHHHHcCCEEEEEeCCC----CCHHHHhccCCCEEEeCCCC
Q 031223 25 NPIIVIDNYDS------FTY----NLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~~~------~~~----~~~~~l~~~G~~~~v~~~~~----~~~~~~~~~~~dgvvl~GG~ 78 (163)
|+|+||+.+.. .+. -+.+.+.++|..+++++... ..+++++.-.||.+++..+.
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vvn~s 68 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSS 68 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEECCC
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEEece
Confidence 57888855421 222 26678999999999987532 23556655579998875543
No 365
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=37.99 E-value=26 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=23.6
Q ss_pred HHHHHHHcCCEEEEEeCCCC-C-HHHHh--ccCCCEEEeCCCC
Q 031223 40 LCQYMGELGYHFEVYRNDEL-T-VEELK--RKNPRGVLISPGP 78 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~-~-~~~~~--~~~~dgvvl~GG~ 78 (163)
+.+...++|.+++.+..+.. . .+.+. ..++|+|||-+|.
T Consensus 40 l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA 82 (156)
T 1gtz_A 40 CVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAA 82 (156)
T ss_dssp HHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTT
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchh
Confidence 33444557999998876521 0 12221 1369999998774
No 366
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=37.86 E-value=13 Score=29.92 Aligned_cols=51 Identities=6% Similarity=-0.038 Sum_probs=28.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhc-cCCCEEEe
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLI 74 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~-~~~dgvvl 74 (163)
.++|+|||........+.+.|+. .|+.+..........+.+.. ..||.|++
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~Dlvll 55 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAIC 55 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEE
Confidence 46899998754455567778877 45554433211001222223 25777776
No 367
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=37.20 E-value=43 Score=20.64 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=24.0
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCE
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYH 50 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~ 50 (163)
.++..+.++.+.... .+|++....+.........|++.|++
T Consensus 39 ip~~~l~~~~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~ 79 (94)
T 1wv9_A 39 VPLEKIQKGEHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYE 79 (94)
T ss_dssp CCHHHHTTTCCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCc
Confidence 345555555544444 55666655433455567778888876
No 368
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=37.15 E-value=1e+02 Score=21.30 Aligned_cols=91 Identities=14% Similarity=0.025 Sum_probs=52.3
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCCCh--HHHHHHHHHHcCCEEEEEeCCCCCH-HHHhccC-CCEEEe-CCCCCCCC
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTV-EELKRKN-PRGVLI-SPGPGAPQ 82 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~~~--~~~~~~~l~~~G~~~~v~~~~~~~~-~~~~~~~-~dgvvl-~GG~~~~~ 82 (163)
...+...++.+.+. .+|.++-.+.+. ...+...|...|..+..++.+.... ......+ =|.+|+ |-+ +
T Consensus 26 ~~~l~~~~~~i~~a---~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~s-G--- 98 (187)
T 3sho_A 26 PEAIEAAVEAICRA---DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVW-R--- 98 (187)
T ss_dssp HHHHHHHHHHHHHC---SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCS-S---
T ss_pred HHHHHHHHHHHHhC---CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCC-C---
Confidence 34566667777554 489999887764 2336677788999888876321111 1122222 244443 332 2
Q ss_pred CChhHHHHHHHh-CCCCCEEEEeh
Q 031223 83 DSGISLQTVLEL-GPTVPLFGVCM 105 (163)
Q Consensus 83 d~~~~~~~i~~~-~~~~PvLGIC~ 105 (163)
......+.++.+ +++.|+++|+-
T Consensus 99 ~t~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 99 YLRDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHCCCCEEEEeC
Confidence 223345555554 57899999984
No 369
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=36.94 E-value=15 Score=27.53 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCCEEEEehHHHHHHHH
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGEA 113 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIC~G~QlLa~a 113 (163)
+.|+|.++-||++..-.---....+. +.-++|++||+. ++.++..
T Consensus 66 dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~~ 112 (218)
T 2a6a_A 66 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAKS 112 (218)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHHT
T ss_pred HCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHhh
Confidence 68999999999875432111222232 245799999995 5555553
No 370
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.92 E-value=27 Score=23.66 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=52.3
Q ss_pred cccCCChhhHhhHHhhhcCCCCCeEEEEECCCChHHH---HHHHHHHcCCEEEEEeCCCCCH-HHHh----c-cCCCEEE
Q 031223 3 VAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYN---LCQYMGELGYHFEVYRNDELTV-EELK----R-KNPRGVL 73 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~---~~~~l~~~G~~~~v~~~~~~~~-~~~~----~-~~~dgvv 73 (163)
|.+++|..+++++..+|..+. ++.++-. ++-... -...+...|.++..+... .++ +.+. . -+.|.++
T Consensus 7 vfssdpeilkeivreikrqgv--rvvllys-dqdekrrrerleefekqgvdvrtvedk-edfrenireiwerypqldvvv 82 (162)
T 2l82_A 7 VFSSDPEILKEIVREIKRQGV--RVVLLYS-DQDEKRRRERLEEFEKQGVDVRTVEDK-EDFRENIREIWERYPQLDVVV 82 (162)
T ss_dssp EEESCHHHHHHHHHHHHHTTC--EEEEEEC-CSCHHHHHHHHHHHHTTTCEEEECCSH-HHHHHHHHHHHHHCTTCCEEE
T ss_pred EecCCHHHHHHHHHHHHhCCe--EEEEEec-CchHHHHHHHHHHHHHcCCceeeeccH-HHHHHHHHHHHHhCCCCcEEE
Confidence 568899999999999998865 4444432 222222 223345578888766421 111 1111 0 1678888
Q ss_pred eCCCCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 74 ISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 74 l~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
|.-- .|...+.++|.+. +++.-++-+-
T Consensus 83 ivtt----ddkewikdfieeakergvevfvvy 110 (162)
T 2l82_A 83 IVTT----DDKEWIKDFIEEAKERGVEVFVVY 110 (162)
T ss_dssp EEEC----CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEec----CcHHHHHHHHHHHHhcCcEEEEEe
Confidence 7332 2333445555554 5677777654
No 371
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=36.83 E-value=1.6e+02 Score=24.48 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEeCCCCC---------HHHHhccCCCEEEeCC
Q 031223 23 NKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRNDELT---------VEELKRKNPRGVLISP 76 (163)
Q Consensus 23 ~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~---------~~~~~~~~~dgvvl~G 76 (163)
.+.+|+|+ |...|-.-.+.+.|.+.|+++.++++.... .++. ..++|+|||.-
T Consensus 352 ~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~-~~~ad~vvi~t 422 (478)
T 3g79_A 352 DGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEV-VRNADAIVVLA 422 (478)
T ss_dssp TTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHH-HTTCSEEEECS
T ss_pred CCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHH-HhcCCEEEEec
Confidence 45789999 444555566899999999999999765311 1111 13789999844
No 372
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=36.82 E-value=72 Score=25.39 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=26.8
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh-ccCCCEEEeC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLIS 75 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~-~~~~dgvvl~ 75 (163)
|||++.+..+.....+.+++++.|+++...+.. .+.+.+. ..++|++++.
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~li~~ 52 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA-LTSATVDLAEGCSSVSLK 52 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC-CSTTGGGGGTTCSEEEEC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC-CCHHHHHHhcCCcEEEEc
Confidence 678888754434444556666678877665432 1111111 1256666664
No 373
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=36.65 E-value=75 Score=19.98 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=18.9
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGY 49 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~ 49 (163)
+..+.+.........+|+++...+.........|++.|+
T Consensus 45 ~~~l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~ 83 (108)
T 1gmx_A 45 NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGY 83 (108)
T ss_dssp HHHHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCC
Confidence 334444443333334455554443344455566666665
No 374
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=36.46 E-value=1.7e+02 Score=23.55 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=58.4
Q ss_pred HhhHHhhhcCCCCCeEEEEECCCChH---HHHHHHHHHc--CCEEEEEeCCCCCHHHH---hccCCCEEEeCCCCCCCCC
Q 031223 12 SLYLDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGEL--GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQD 83 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~Ilvid~~~~~~---~~~~~~l~~~--G~~~~v~~~~~~~~~~~---~~~~~dgvvl~GG~~~~~d 83 (163)
..+++++...+ ..++.||...++. ...++++++. +..+..-.. .+.++. .....|+|+++.|++...+
T Consensus 102 ~e~~~~a~~aG--vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V--~T~e~A~~a~~aGaD~I~Vg~g~G~~~~ 177 (361)
T 3r2g_A 102 LQRAEALRDAG--ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNV--ATYAGADYLASCGADIIKAGIGGGSVCS 177 (361)
T ss_dssp HHHHHHHHHTT--CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEE--CSHHHHHHHHHTTCSEEEECCSSSSCHH
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCc--CCHHHHHHHHHcCCCEEEEcCCCCcCcc
Confidence 44555554443 3488887432332 3466777765 555443111 233332 2347999999766654311
Q ss_pred -------ChhHHHHHHHh-CCCCCEE---EEehHHHHH-HHHhCCeeeeC
Q 031223 84 -------SGISLQTVLEL-GPTVPLF---GVCMGLQCI-GEAFGGKIVRS 121 (163)
Q Consensus 84 -------~~~~~~~i~~~-~~~~PvL---GIC~G~QlL-a~a~Gg~v~~~ 121 (163)
.....+.|.+. +...||+ ||..|-++. +.++|+...-.
T Consensus 178 tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 178 TRIKTGFGVPMLTCIQDCSRADRSIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHCCCCCHHHHHHHHTTSSSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccCCccHHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 01134555654 3223999 788787777 55788875543
No 375
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=35.74 E-value=78 Score=24.34 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=42.5
Q ss_pred hhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHH-cC-CEEEEE------eCCCCCHHH-----------HhccCCCEEE
Q 031223 13 LYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGE-LG-YHFEVY------RNDELTVEE-----------LKRKNPRGVL 73 (163)
Q Consensus 13 ~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~-~G-~~~~v~------~~~~~~~~~-----------~~~~~~dgvv 73 (163)
++|-+-..+|...+|.|+|-+-+-. .+.+.+.+ .- .....+ |+-..+.++ +...++|+||
T Consensus 13 ~~~~~~~~~~~~~~IGvfDsG~Ggl-tv~~~i~~~~P~~~~iy~~D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d~IV 91 (290)
T 2vvt_A 13 GLVPRGSHMSNQEAIGLIDSGVGGL-TVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLV 91 (290)
T ss_dssp --CTTSSCCGGGSCEEEEESSSTTH-HHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred CCCCCCccccCCCcEEEEeCCCcHH-HHHHHHHHHCCCccEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3343334444345799999876543 34555544 22 222222 211112222 2234789999
Q ss_pred eCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHH
Q 031223 74 ISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 107 (163)
Q Consensus 74 l~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~ 107 (163)
+.=.. +.....+.+++. -++|++||.--.
T Consensus 92 IACNT----as~~~l~~lr~~-~~iPVigiiepa 120 (290)
T 2vvt_A 92 IACNT----ATAVALEEIKAA-LPIPVVGVILPG 120 (290)
T ss_dssp ECCHH----HHHHHHHHHHHH-CSSCEEESSHHH
T ss_pred EeCcc----hhHHHHHHHHHh-CCCCEEcccHHH
Confidence 83321 110124555553 249999976433
No 376
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=35.73 E-value=81 Score=25.09 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=48.0
Q ss_pred eEEEEECCCChHHHHHHHHHHcCCEE-EEEeC--C---CCCHHHHh-----ccCCCEEEeC---CCCCCCCCChhHHHHH
Q 031223 26 PIIVIDNYDSFTYNLCQYMGELGYHF-EVYRN--D---ELTVEELK-----RKNPRGVLIS---PGPGAPQDSGISLQTV 91 (163)
Q Consensus 26 ~Ilvid~~~~~~~~~~~~l~~~G~~~-~v~~~--~---~~~~~~~~-----~~~~dgvvl~---GG~~~~~d~~~~~~~i 91 (163)
+|.+|.--+.....+.+++.+.|.-+ ..+.. + ..+..++. +.+-+.|++- ||. .+ .++.+.+
T Consensus 170 ~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~---~e-~~~~~~~ 245 (334)
T 3mwd_B 170 SVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGT---EE-YKICRGI 245 (334)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSS---HH-HHHHHHH
T ss_pred CEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCCh---HH-HHHHHHH
Confidence 59999876567888888887765422 23322 1 12343432 1256778774 553 12 3456667
Q ss_pred HHhCCCCCEEEEehHH
Q 031223 92 LELGPTVPLFGVCMGL 107 (163)
Q Consensus 92 ~~~~~~~PvLGIC~G~ 107 (163)
++...+|||..++-|-
T Consensus 246 r~~~~~KPVV~~kaGr 261 (334)
T 3mwd_B 246 KEGRLTKPIVCWCIGT 261 (334)
T ss_dssp HTTSCCSCEEEEEECT
T ss_pred HhhcCCCCEEEEEcCC
Confidence 7656789999999775
No 377
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=35.61 E-value=63 Score=24.30 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=35.0
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-----CCH----HHHhccCCCEEEeCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-----LTV----EELKRKNPRGVLISPG 77 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-----~~~----~~~~~~~~dgvvl~GG 77 (163)
...+.+|+++.-. .-...+.+.|++.|+++..++.+. .+. +.+...++|.|+++-+
T Consensus 138 ~~~g~~vLi~rg~-~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 202 (269)
T 3re1_A 138 AVPGSRVLIMRGN-EGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSG 202 (269)
T ss_dssp CSSSCEEEEEECS-SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSH
T ss_pred cCCCCEEEEEccC-ccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCH
Confidence 4456789998643 234467889999999887654321 111 1223347899998544
No 378
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=35.60 E-value=1.7e+02 Score=23.96 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=27.6
Q ss_pred CCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.+.+|+|+ |..+|-.-.+.+.|.+.|+++.++++.
T Consensus 328 ~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~ 371 (467)
T 2q3e_A 328 TDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPK 371 (467)
T ss_dssp TTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCc
Confidence 45789999 445555566899999999999999875
No 379
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=35.52 E-value=82 Score=24.52 Aligned_cols=45 Identities=7% Similarity=0.106 Sum_probs=28.5
Q ss_pred hHhhHHhhhcCCCCCeEEEEECCC---C---hHHHHHHHHHHcCCEEEEEeC
Q 031223 11 KSLYLDDKKSKNNKNPIIVIDNYD---S---FTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~~Ilvid~~~---~---~~~~~~~~l~~~G~~~~v~~~ 56 (163)
|+.+-+-.+. +.+|||+++.... + +...+.+.|.+.|+++.++-.
T Consensus 28 ~~~~~~~~~~-~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~ 78 (416)
T 2x6q_A 28 VSKIQEKAEK-LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVI 78 (416)
T ss_dssp HHHHHHHHHT-TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHhhhh-hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 4444443343 4568999995532 2 233577889899999987643
No 380
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=35.30 E-value=1.2e+02 Score=22.42 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCeEEEE-ECCCChHHHHHHHHHH---cCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 24 KNPIIVI-DNYDSFTYNLCQYMGE---LGYHFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 24 ~~~Ilvi-d~~~~~~~~~~~~l~~---~G~~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
.++|+|+ .-..+.+..+++.|.+ .|+.+.+++.++.+.+++. +++.+|+
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~~l~--~~~~vI~ 92 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLE--EERLLLV 92 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGGGGG--TCSEEEE
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHhHhc--cCCeEEE
Confidence 3456666 2223456666665543 5788888876544455554 6777777
No 381
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=35.28 E-value=1.2e+02 Score=21.70 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=31.4
Q ss_pred CeEEEEECCC-------ChHHHHHHH----HHHcCCEEEEEeCCC-CCHHHHhc--cCCCEEEeCCCC
Q 031223 25 NPIIVIDNYD-------SFTYNLCQY----MGELGYHFEVYRNDE-LTVEELKR--KNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~~-------~~~~~~~~~----l~~~G~~~~v~~~~~-~~~~~~~~--~~~dgvvl~GG~ 78 (163)
.+||||.... +++..+.++ +++.|.+++++..++ .+..++.. ...|+||+ +.|
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~-~~P 79 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW-QMP 79 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE-EEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE-ECC
Confidence 5799995422 354445544 445689999887642 22333221 37899998 444
No 382
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=35.09 E-value=1.3e+02 Score=24.63 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCeEEEE---------ECCCChHHHHHHHHHHc-CCEEEEEeCCCC------CHHHHhccCCCEEEeCCC
Q 031223 23 NKNPIIVI---------DNYDSFTYNLCQYMGEL-GYHFEVYRNDEL------TVEELKRKNPRGVLISPG 77 (163)
Q Consensus 23 ~~~~Ilvi---------d~~~~~~~~~~~~l~~~-G~~~~v~~~~~~------~~~~~~~~~~dgvvl~GG 77 (163)
.+.+|+|+ |..+|-.-.+.+.|.+. |+++.++++... +.++. ..++|+|||.-.
T Consensus 314 ~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~~~~~~~~~~-~~~ad~vvi~t~ 383 (431)
T 3ojo_A 314 SGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHA-VKDASLVLILSD 383 (431)
T ss_dssp SCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCTTBCSTTHHH-HTTCSEEEECSC
T ss_pred CCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccccccCCHHHH-HhCCCEEEEecC
Confidence 45689999 44455555688999999 999999977521 11111 137999999544
No 383
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=34.78 E-value=66 Score=23.87 Aligned_cols=53 Identities=13% Similarity=0.328 Sum_probs=31.4
Q ss_pred CeEEEEECCC-------ChHHHHHH----HHHHcCCEEEEEeCCC-CCHHHH-hc-cCCCEEEeCCCC
Q 031223 25 NPIIVIDNYD-------SFTYNLCQ----YMGELGYHFEVYRNDE-LTVEEL-KR-KNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~~-------~~~~~~~~----~l~~~G~~~~v~~~~~-~~~~~~-~~-~~~dgvvl~GG~ 78 (163)
++|+||.... ++...+.+ .+++.|.+++++..++ .+.++. .. ..+|+||+ +.|
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~-~~P 92 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY-QMP 92 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE-EEE
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE-ECC
Confidence 4799996432 35554444 4455799999887542 223222 11 37999998 444
No 384
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=34.75 E-value=1.7e+02 Score=25.41 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=35.9
Q ss_pred HhhHHhhhcCCCCCeEEEE-ECCCChHHHHH----HHHH-HcCCEEEEEeCCCCCHHHHhccCC-CEEEe
Q 031223 12 SLYLDDKKSKNNKNPIIVI-DNYDSFTYNLC----QYMG-ELGYHFEVYRNDELTVEELKRKNP-RGVLI 74 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~Ilvi-d~~~~~~~~~~----~~l~-~~G~~~~v~~~~~~~~~~~~~~~~-dgvvl 74 (163)
+.++++.+..++ +|+|+ .-..+++..++ +.+. +.|+.+.+.+.++.+.+++. ++ +.+|+
T Consensus 39 ~~~~~~~~~~~~--ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~--~~~~~vi~ 104 (682)
T 2bpo_A 39 RDIAQVVTENNK--NYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLN--DVPVIVSI 104 (682)
T ss_dssp CCHHHHHHHTTC--SEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGG--GCCSEEEE
T ss_pred hhHHHHHhcCCC--eEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHh--hcCCeEEE
Confidence 466766655443 46665 22234555555 4555 66899988887654555554 57 88887
No 385
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=34.72 E-value=1.1e+02 Score=22.46 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.7
Q ss_pred CeEEEEECC-CChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCC
Q 031223 25 NPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~-~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~ 78 (163)
.+|.++-.. +.|-.. +.+++++.|+.+.+...+ .+.+ .+...++||||+.+..
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSE-ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECT-TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 457776432 223333 455667789988877653 2221 1223479999997753
No 386
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=34.61 E-value=43 Score=24.22 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG 77 (163)
+.+.+++.|+.+.+...+ .+. +.+...++||+|+.+.
T Consensus 24 i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 24 MLPAFYEQGYDPIMMESQ-FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHcCCEEEEEeCC-CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 556677789998887643 222 1222357999999775
No 387
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=34.20 E-value=1.1e+02 Score=21.70 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHcCCEEEEEeCCCC-C-HHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 40 LCQYMGELGYHFEVYRNDEL-T-VEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~-~-~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
+.+...+.|++++.+..+.. . .+.+. ..++|+|||-+|..+- ..-.+.+.+..+. +|+.=|
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~TH-tSvAlrDAl~~~~--~P~VEV 105 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTH-TSVALRDALLGVQ--IPFIEI 105 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGG-TCHHHHHHHHHHT--CCEEEE
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEcccccee-chHHHHHHHHhcC--CCEEEE
Confidence 33444558999988875421 0 12221 2479999998875321 1223455555554 787644
No 388
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=34.19 E-value=93 Score=23.83 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.0
Q ss_pred hhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 9 ISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+-|.+|++.++..+ +.+++||-.+ +.-..+...|.+.|.++.++.-
T Consensus 104 TD~~Gf~~~L~~~~-~k~vlvlGaG-Gaaraia~~L~~~G~~v~V~nR 149 (269)
T 3phh_A 104 TDALGFYLSLKQKN-YQNALILGAG-GSAKALACELKKQGLQVSVLNR 149 (269)
T ss_dssp CHHHHHHHHCC----CCEEEEECCS-HHHHHHHHHHHHTTCEEEEECS
T ss_pred ChHHHHHHHHHHcC-CCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeC
Confidence 45888998887655 7889999874 4666788899999988877743
No 389
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=34.18 E-value=1.7e+02 Score=22.97 Aligned_cols=56 Identities=5% Similarity=0.008 Sum_probs=37.8
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
.-.+.+++||-.+...-..+...|...|+++.+.+....++.+.. .+.|-||..=|
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 217 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV-NKGDILVVATG 217 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEECCC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHh-ccCCEEEECCC
Confidence 345678999987544556678888889999998865433454432 37887775433
No 390
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=34.13 E-value=31 Score=25.00 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=32.6
Q ss_pred HHHHHHHcCCEEEEEeCCCC-C-HHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223 40 LCQYMGELGYHFEVYRNDEL-T-VEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 40 ~~~~l~~~G~~~~v~~~~~~-~-~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI 103 (163)
+.+...+.|++++.+..+.. . .+.+. ..++|+|||-+|..+-+ .-.+.+.+.. -++|+.=|
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHt-SvAlrDAL~~--v~~P~VEV 126 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHT-SVALRDACAE--LSAPLIEV 126 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGT-CHHHHHHHTT--CCSCEEEE
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhh-hHHHHHHHHh--CCCCEEEE
Confidence 33444558999998876521 0 12221 13689999988753211 1123444433 34787644
No 391
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=34.02 E-value=36 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=24.7
Q ss_pred CCeEEEEECC-----------------CC---hHHHHHHHHHHcCCEEEEEeCC
Q 031223 24 KNPIIVIDNY-----------------DS---FTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 24 ~~~Ilvid~~-----------------~~---~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.|||+++... ++ +...+.+.|.+.|+++.++...
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3789999654 22 3445788898999999988643
No 392
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=33.92 E-value=95 Score=20.00 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=28.1
Q ss_pred CeEEEE-ECCC--Ch-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCC
Q 031223 25 NPIIVI-DNYD--SF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (163)
Q Consensus 25 ~~Ilvi-d~~~--~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~G 76 (163)
++|+++ ..+- |. ...+.+.+.+.|+++++........++. ..++|.|+.+.
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~-~~~~D~Ii~t~ 59 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEV-VDRFDVVLLAP 59 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHH-TTTCSEEEECS
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh-cCCCCEEEECC
Confidence 567666 3332 22 3346667777888766554332334433 24799776644
No 393
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=33.61 E-value=52 Score=22.97 Aligned_cols=47 Identities=6% Similarity=0.013 Sum_probs=28.4
Q ss_pred eEEEEEC-CCChHHHHHHHHHH-cCC--EEEEEeCCCCCHHHHhccCCCEEEe
Q 031223 26 PIIVIDN-YDSFTYNLCQYMGE-LGY--HFEVYRNDELTVEELKRKNPRGVLI 74 (163)
Q Consensus 26 ~Ilvid~-~~~~~~~~~~~l~~-~G~--~~~v~~~~~~~~~~~~~~~~dgvvl 74 (163)
+|+|+-. ..+++..+++.+.+ ++. ++++++....+.+++. ++|.|||
T Consensus 3 kilIiY~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~ 53 (182)
T 2wc1_A 3 KIGLFFGSDTGTTRKIAKQIKDMFDDEVMAKPLNVNRADVADFM--AYDFLIL 53 (182)
T ss_dssp SEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--HCSEEEE
T ss_pred EEEEEEECCCchHHHHHHHHHHHhcccCceEEEEcccCCHHHHh--hCCeEEE
Confidence 5777743 23467788888865 333 3555554333445554 6899988
No 394
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=33.23 E-value=1.4e+02 Score=23.62 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCCEEEeCC-CCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 68 NPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 68 ~~dgvvl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
.++||||-| |.++.. ..+.+.++++ ++++||.-+
T Consensus 245 g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~Gi~VV~~ 280 (334)
T 3nxk_A 245 GTKGIVVAGSGAGSIH--KNQKDVLKELLKKGLKVVVS 280 (334)
T ss_dssp TCCEEEEEEBTTTBCC--HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCEEEEeeECCCCCc--HHHHHHHHHHHHCCCEEEEe
Confidence 688999855 444433 4567777774 788998854
No 395
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=32.57 E-value=1.2e+02 Score=23.23 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=20.0
Q ss_pred CCeEEEEECCCChHH-HHHHHHHHcCCEEEEE
Q 031223 24 KNPIIVIDNYDSFTY-NLCQYMGELGYHFEVY 54 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~ 54 (163)
+++|+|.-.. ++.+ .+.+.|.+.|.++.++
T Consensus 10 ~~~IlVtGat-G~iG~~l~~~L~~~g~~V~~l 40 (346)
T 3i6i_A 10 KGRVLIAGAT-GFIGQFVATASLDAHRPTYIL 40 (346)
T ss_dssp -CCEEEECTT-SHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCC-cHHHHHHHHHHHHCCCCEEEE
Confidence 4578888754 4544 4778887778777655
No 396
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=32.39 E-value=62 Score=28.24 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=25.3
Q ss_pred HhhHHhhhcCC----CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 12 SLYLDDKKSKN----NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 12 ~~~~~~~~~~~----~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
++++-+-.-|+ |.++|+|++. +.....+.+.++++|+.+.++..+
T Consensus 12 ~~~~~~~~~mm~~~~m~~kILI~g~-Geia~~iiraar~lGi~~vav~s~ 60 (675)
T 3u9t_A 12 SGLVPRGSHMNPDYRSIQRLLVANR-GEIACRVMRSARALGIGSVAVHSD 60 (675)
T ss_dssp -------------CCCCSEEEECCC-HHHHHHHHHHHHHHTCEEEEEECS
T ss_pred cccccCcccccccccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Confidence 34555543332 3357888874 346667999999999998877543
No 397
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=32.26 E-value=68 Score=21.52 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.+.+|+|+-. +..-..+.+.|.+.|.++.++..+
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 3456888854 335556888888888888887653
No 398
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=31.89 E-value=34 Score=25.45 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=34.1
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC---CHHHH----hc--cCCCEEEeCCC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEEL----KR--KNPRGVLISPG 77 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~---~~~~~----~~--~~~dgvvl~GG 77 (163)
-.+++|+|.... . ...+.+.|++.|+++..+|.-.. +.+.+ .. .+||.||++..
T Consensus 6 l~g~~vlvtr~~-~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~ 68 (261)
T 1wcw_A 6 EDAVRVAYAGLR-R-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTG 68 (261)
T ss_dssp --CCEEEECCST-T-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCH
T ss_pred CCCCEEEEeCCC-c-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCH
Confidence 346789988754 3 67789999999998876543211 11221 11 26999999654
No 399
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=31.58 E-value=1.4e+02 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=35.4
Q ss_pred CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCChh
Q 031223 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGI 86 (163)
Q Consensus 25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~ 86 (163)
.|++||-...+ +...+.+.|++.|+++.+++--. .+.+.+ ...++|.||=.|| +++.|..+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHH
Confidence 47888743222 34456777888899887775311 223332 2357999995566 44545433
No 400
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=31.14 E-value=80 Score=22.59 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=34.8
Q ss_pred CCCCCeEEEEECCCChH-HHHHHHHHHcCCEEEEEeCCCCCHH-----------------HHhc--cCCCEEEeCCCCCC
Q 031223 21 KNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVE-----------------ELKR--KNPRGVLISPGPGA 80 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~-~~~~~~l~~~G~~~~v~~~~~~~~~-----------------~~~~--~~~dgvvl~GG~~~ 80 (163)
..++++|+|.-.. ++. ..+.+.|.+.|+++.++.-+....+ .+.. .++|.||..-|...
T Consensus 18 ~l~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~ 96 (236)
T 3e8x_A 18 YFQGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGP 96 (236)
T ss_dssp ---CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCCT
T ss_pred CcCCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCCC
Confidence 3345678877654 454 4588888888988876643211111 1111 26899998888654
Q ss_pred C
Q 031223 81 P 81 (163)
Q Consensus 81 ~ 81 (163)
.
T Consensus 97 ~ 97 (236)
T 3e8x_A 97 H 97 (236)
T ss_dssp T
T ss_pred C
Confidence 3
No 401
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=30.89 E-value=1.8e+02 Score=22.59 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=39.9
Q ss_pred HHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 15 LDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 15 ~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
+++....-.+.+++||-.+...-..+...|...|+++.+.+....++.+.. .+.|-||..=|
T Consensus 150 l~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 211 (288)
T 1b0a_A 150 LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV-ENADLLIVAVG 211 (288)
T ss_dssp HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH-HHCSEEEECSC
T ss_pred HHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-ccCCEEEECCC
Confidence 333333446678999987544456678888889999999875434454432 26787775433
No 402
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.65 E-value=1.8e+02 Score=22.50 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=31.0
Q ss_pred CCCCCeEEEEECCCChHHH-HHHHHHHc-CCEEEE-EeCCC-------------CCHHHHhc-cCCCEEEeCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYN-LCQYMGEL-GYHFEV-YRNDE-------------LTVEELKR-KNPRGVLISPG 77 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~-~~~~l~~~-G~~~~v-~~~~~-------------~~~~~~~~-~~~dgvvl~GG 77 (163)
|++++||.||-.+ ..-.. ..+.+.+. ++++.- ...+. .+.+++.. .++|+|+|+--
T Consensus 4 M~~~~rvgiiG~G-~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 76 (352)
T 3kux_A 4 MADKIKVGLLGYG-YASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTP 76 (352)
T ss_dssp TTCCEEEEEECCS-HHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSC
T ss_pred ccCCceEEEECCC-HHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence 4456889999874 22332 55666664 555542 22210 13444432 36999999553
No 403
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=30.54 E-value=59 Score=19.48 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=24.2
Q ss_pred hhHhhHHhhhcC--CCCCeEEEEECCCChHHHHHHHHHHcCCE
Q 031223 10 SKSLYLDDKKSK--NNKNPIIVIDNYDSFTYNLCQYMGELGYH 50 (163)
Q Consensus 10 ~~~~~~~~~~~~--~~~~~Ilvid~~~~~~~~~~~~l~~~G~~ 50 (163)
++..+.+..... ....+|+++...+.........|++.|++
T Consensus 25 p~~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 25 PLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp CHHHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 444454444332 44456777765443455677888888874
No 404
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=30.54 E-value=59 Score=26.09 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
++++|+|+..+ ..-..+.+.++++|+++.++.
T Consensus 23 ~~~~I~ilGgG-~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 23 NSRKVGVLGGG-QLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp SCCEEEEECCS-HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEE
Confidence 45789999853 456678899999999998887
No 405
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=29.66 E-value=1.5e+02 Score=23.31 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred ccccCCChhhHhhHHhhhcC-CCCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEe-CCCCCHHHHh--------c
Q 031223 2 AVAEAVPISKSLYLDDKKSK-NNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYR-NDELTVEELK--------R 66 (163)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~-~~~~~~~~~~--------~ 66 (163)
+++++-....+.-++.++.. +..+.+++|--++. |..+-.+..++.|+..+.+. +...+.+++. +
T Consensus 30 ~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 30 ALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC
Q ss_pred cCCCEEEe
Q 031223 67 KNPRGVLI 74 (163)
Q Consensus 67 ~~~dgvvl 74 (163)
.+.+||++
T Consensus 110 ~~V~GIlV 117 (303)
T 4b4u_A 110 PDVHGILL 117 (303)
T ss_dssp TTCCEEEE
T ss_pred CCccEEEE
No 406
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=29.50 E-value=62 Score=22.88 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=20.6
Q ss_pred EEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223 71 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (163)
Q Consensus 71 gvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G 106 (163)
.|+|+-|..+.. ...+.++.+ ..+++++.|.+|
T Consensus 115 ivllTDG~~~~~---~~~~~~~~~~~~~i~v~~igig 148 (218)
T 3ibs_A 115 IIVITDGENHEG---GAVEAAKAAAEKGIQVSVLGVG 148 (218)
T ss_dssp EEEEECCTTCCS---CHHHHHHHHHTTTEEEEEEEES
T ss_pred EEEEcCCCCCCC---cHHHHHHHHHhcCCEEEEEEec
Confidence 455677754322 234445554 578999999988
No 407
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=29.46 E-value=1.1e+02 Score=22.85 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=35.3
Q ss_pred CCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeC----CCCCHHHHhc--c--CCCEEEeCCCCCC
Q 031223 24 KNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRN----DELTVEELKR--K--NPRGVLISPGPGA 80 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~----~~~~~~~~~~--~--~~dgvvl~GG~~~ 80 (163)
+++|+|.-.. ++.+ .+.+.|.+.|+++.++.. |..+.+.+.. . ++|.||-..|...
T Consensus 3 ~~~ilVtGat-G~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 67 (321)
T 1e6u_A 3 KQRVFIAGHR-GMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVG 67 (321)
T ss_dssp CEEEEEETTT-SHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CCEEEEECCC-cHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence 4678877643 5654 588888888988766532 2122333321 2 7999998888653
No 408
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=29.21 E-value=1e+02 Score=20.65 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.+++|+|+-. +..-..+.+.|.+.|.++.++..+
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 3468999965 345556889999999988888654
No 409
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=29.13 E-value=1.9e+02 Score=21.89 Aligned_cols=47 Identities=9% Similarity=-0.090 Sum_probs=31.3
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECCCChHH-HHHHHHHHcCCEEEEEe
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYR 55 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~ 55 (163)
.+++.|+++.+.... +.++|+|.-. .+|.+ .+++.|.+.|.++..+.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~ 56 (351)
T 3ruf_A 9 IYMSRYEEITQQLIF--SPKTWLITGV-AGFIGSNLLEKLLKLNQVVIGLD 56 (351)
T ss_dssp -CCHHHHHHHHHHHH--SCCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhhHHhhCCC--CCCeEEEECC-CcHHHHHHHHHHHHCCCEEEEEe
Confidence 466778887766432 3457887764 35655 48888888898877653
No 410
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=28.37 E-value=50 Score=26.37 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=37.5
Q ss_pred CeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCChhHHHH
Q 031223 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQT 90 (163)
Q Consensus 25 ~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~~~~ 90 (163)
.|++||-... ++...+.+.|++.|+++.+++.-+ .+.+.+ ...++|.||=.|| +++.|..+....
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~ 109 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCKAIGI 109 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHHHHHH
Confidence 4788884211 244557778888899887765211 223332 2347899995566 555565444333
No 411
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=28.36 E-value=2.1e+02 Score=22.25 Aligned_cols=81 Identities=7% Similarity=-0.018 Sum_probs=44.0
Q ss_pred CCeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHH---
Q 031223 24 KNPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE--- 93 (163)
Q Consensus 24 ~~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~--- 93 (163)
.++++|+-.- .+++..+++ .+.+.|++++++.....+..++.. .++|++|+.-+...-.....+..++.+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~ 331 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG 331 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHHHHhhh
Confidence 4678888432 235555444 455568888888765444444321 379999993332222223334444444
Q ss_pred h-CCCCCEEEEe
Q 031223 94 L-GPTVPLFGVC 104 (163)
Q Consensus 94 ~-~~~~PvLGIC 104 (163)
. -+++++.-+|
T Consensus 332 ~~l~~k~~~~f~ 343 (402)
T 1e5d_A 332 LRPQNKIGGAFG 343 (402)
T ss_dssp TCCCSCEEEEEE
T ss_pred cccCCCEEEEEE
Confidence 2 2567765443
No 412
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=28.28 E-value=1.8e+02 Score=21.56 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeCCC--------------CCHHHHhc--cCCCEEEeCCCCCCC
Q 031223 24 KNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDE--------------LTVEELKR--KNPRGVLISPGPGAP 81 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~~~--------------~~~~~~~~--~~~dgvvl~GG~~~~ 81 (163)
.++|+|.-.. ++.+ .+.+.|.+.|.++..+.-.. ...+.+.. .++|.||-..|....
T Consensus 2 ~~~vlVtGat-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~~~ 75 (311)
T 3m2p_A 2 SLKIAVTGGT-GFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGS 75 (311)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCCCCS
T ss_pred CCEEEEECCC-cHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEccccCCC
Confidence 4678887653 5654 58888888898877653210 11223321 379999988886544
No 413
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=28.03 E-value=2.1e+02 Score=22.21 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=41.9
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
++++....-.+.+++||-.+...-..+...|...|+.+.+......++++.. .+.|-||..=|
T Consensus 151 lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~-~~ADIVI~Avg 213 (286)
T 4a5o_A 151 LLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHV-SRADLVVVAAG 213 (286)
T ss_dssp HHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-HTCSEEEECCC
T ss_pred HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHh-ccCCEEEECCC
Confidence 3444444456788999987544566788888889999998865434454432 27887776444
No 414
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=28.03 E-value=51 Score=26.50 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=25.3
Q ss_pred cCCCEEEeCC-CCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223 67 KNPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (163)
Q Consensus 67 ~~~dgvvl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGI 103 (163)
..++||||-| |.++......+.+.++++ ++++||.-+
T Consensus 252 ~g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~~ 290 (358)
T 2him_A 252 QPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNL 290 (358)
T ss_dssp SSCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3689999965 556555334566777774 688998743
No 415
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=27.85 E-value=71 Score=23.51 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=32.1
Q ss_pred hhHhhHHhh-hcCCCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeC
Q 031223 10 SKSLYLDDK-KSKNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~ 56 (163)
.|....+.+ +....+.+|++++.+|.. ...+.+.+++.|++++++|-
T Consensus 60 ~~~~~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPG 111 (239)
T 1va0_A 60 KQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPG 111 (239)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEECC
T ss_pred CHHHHHHHHHHHHHCCCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECC
Confidence 456655554 222345679999887764 33467778888999999974
No 416
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=27.72 E-value=60 Score=26.39 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=32.0
Q ss_pred HhhHHhhhcCCCCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 12 SLYLDDKKSKNNKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+-.++++... .+.+|+|+ |...|-.-.+.+.|.+.|+++.++++
T Consensus 302 ~~~~~~~~~~-~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP 354 (436)
T 1mv8_A 302 QKAFDLITSH-DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDR 354 (436)
T ss_dssp HHHHHHHTTS-SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECH
T ss_pred HHHHHHHHHh-cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECC
Confidence 4456666554 56789999 44445555689999999999998865
No 417
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=27.56 E-value=2.1e+02 Score=21.94 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=20.4
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEV 53 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v 53 (163)
.+||.||-.++.......+.+.+.+.++..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVS 32 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 468899987544556677777777766543
No 418
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=27.32 E-value=90 Score=19.28 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRN 56 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~ 56 (163)
+.++|+|+-. +..-..+.+.|.+.| .++.++..
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEES
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeC
Confidence 3467888866 334445788888888 67766653
No 419
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=27.32 E-value=2.2e+02 Score=22.11 Aligned_cols=63 Identities=8% Similarity=0.123 Sum_probs=42.0
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
++++....-.+.+++||-.+...-..+...|...|+++.+.+....++++.. .+.|-||..=|
T Consensus 150 lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~-~~ADIVI~Avg 212 (285)
T 3p2o_A 150 LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYT-RQADLIIVAAG 212 (285)
T ss_dssp HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHH-TTCSEEEECSS
T ss_pred HHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHh-hcCCEEEECCC
Confidence 3344444446678999987544566788888899999988865434455442 37887776444
No 420
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.21 E-value=1.4e+02 Score=20.03 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=28.0
Q ss_pred hhHhhHH-hhhcCCCCCeEEEEECCC--ChHHHHHHHHHHcCCEEEEEe
Q 031223 10 SKSLYLD-DKKSKNNKNPIIVIDNYD--SFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 10 ~~~~~~~-~~~~~~~~~~Ilvid~~~--~~~~~~~~~l~~~G~~~~v~~ 55 (163)
+|..+.. +........+|+|....+ .........|++.|+++.++.
T Consensus 57 p~~~l~~~~~~~l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~ 105 (144)
T 3nhv_A 57 PGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELI 105 (144)
T ss_dssp CGGGCSTTTTTTCCTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHhHHHHhhCCCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeC
Confidence 4444442 344444455677776554 246667888999999755553
No 421
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=27.19 E-value=2.6e+02 Score=22.91 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHF 51 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~ 51 (163)
.+.+|.+|-|+++.--...+.+.+.|.++
T Consensus 292 ~g~rvaiitngGG~~~laaD~~~~~Gl~l 320 (457)
T 2csu_A 292 RGNKVAIMTNAGGPGVLTADELDKRGLKL 320 (457)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 36799999998777767788888888763
No 422
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=27.07 E-value=1.6e+02 Score=23.15 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=40.0
Q ss_pred CChhhHhhHHhhhcCC--CCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh--------ccCCC
Q 031223 7 VPISKSLYLDDKKSKN--NKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELK--------RKNPR 70 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~--~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~--------~~~~d 70 (163)
-....+.-++.++..+ ..+.+++|.-++. |..+-.+..++.|+..+.+... +.+.+++. +.+.+
T Consensus 16 i~~~~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~ 95 (301)
T 1a4i_A 16 IRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVH 95 (301)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCc
Confidence 3444556666665443 4467777755433 4445556678899998877532 23333331 23689
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 96 GIlv 99 (301)
T 1a4i_A 96 GFLV 99 (301)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 423
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=27.02 E-value=1e+02 Score=23.85 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCeEEEEECC------CC---hHHHHHHHHHHcCCEEEEEeC
Q 031223 24 KNPIIVIDNY------DS---FTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 24 ~~~Ilvid~~------~~---~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+|||++|-.. ++ +...+.+.|.+.|+++.++.+
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~ 43 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 43 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5789999532 22 355688899999999998864
No 424
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.96 E-value=1.2e+02 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=22.6
Q ss_pred CeEEEEECC---CChHHHHHHHHHHcCCEEEEEeC
Q 031223 25 NPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid~~---~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
.+|+||-.. +..-..+.+.|.+.|+++..+.+
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp 48 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSP 48 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCC
Confidence 459999653 34666788889999987555544
No 425
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=26.86 E-value=22 Score=26.46 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=27.3
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCCEEEEehHHHHHHH
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGE 112 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIC~G~QlLa~ 112 (163)
+.|+|.++-||++..-..--....+. +..++|+.||+. ++.++.
T Consensus 56 dld~Iav~~GPGsfTglRig~~~AkgLa~~~~iPl~gVst-L~a~a~ 101 (213)
T 3r6m_A 56 DLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVST-LAAMAQ 101 (213)
T ss_dssp TCSEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHH
T ss_pred HccEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEEEEcC-HHHHHH
Confidence 68999999999886422111122222 245699999985 444444
No 426
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=26.83 E-value=2.5e+02 Score=22.63 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=50.8
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHH--HHHHHHHcCCEEEEEeCCCCCHHH-HhccCCCEEEeCCCCCCCCC-------
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQD------- 83 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~--~~~~l~~~G~~~~v~~~~~~~~~~-~~~~~~dgvvl~GG~~~~~d------- 83 (163)
++...+..+...+|.+.+-...+.+. ....|.+.|++++++... ...- +...++|.||+ |- .....
T Consensus 197 ~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Ds--a~~~~M~~~~Vd~ViV-GA-D~V~aNG~v~NK 272 (374)
T 2yvk_A 197 PFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDS--MAAHTMKEKQISAVIV-GA-DRIAKNGDTANK 272 (374)
T ss_dssp HHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGG--GHHHHHHHTTCCEEEE-CC-SEEETTCCEEEE
T ss_pred HHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehh--HHHHHhhhcCCCEEEE-Cc-cEEecCCCEEec
Confidence 44444556667788888776666553 578899999999988632 2222 23235888887 43 32211
Q ss_pred ChhH-HHHHHHhCCCCCEEEEe
Q 031223 84 SGIS-LQTVLELGPTVPLFGVC 104 (163)
Q Consensus 84 ~~~~-~~~i~~~~~~~PvLGIC 104 (163)
.+.. ...+.+ ..++|++-.|
T Consensus 273 iGTy~lAl~Ak-~~~vPfyV~a 293 (374)
T 2yvk_A 273 IGTYGLAILAN-AFDIPFFVAA 293 (374)
T ss_dssp TTHHHHHHHHH-HTTCCEEEEC
T ss_pred ccHHHHHHHHH-HcCCCEEEec
Confidence 1222 233322 3569999877
No 427
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=26.74 E-value=68 Score=25.86 Aligned_cols=35 Identities=6% Similarity=0.263 Sum_probs=23.8
Q ss_pred CCCCeEEEEECC----------------CC---hHHHHHHHHHHcCCEEEEEeC
Q 031223 22 NNKNPIIVIDNY----------------DS---FTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 22 ~~~~~Ilvid~~----------------~~---~~~~~~~~l~~~G~~~~v~~~ 56 (163)
++.|||++|... ++ +...+.+.|.+.|+++.++..
T Consensus 5 ~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~ 58 (499)
T 2r60_A 5 TRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITR 58 (499)
T ss_dssp --CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeC
Confidence 344899999642 11 344578888889999998754
No 428
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=26.72 E-value=86 Score=29.58 Aligned_cols=34 Identities=3% Similarity=0.116 Sum_probs=25.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
+|..+|+|++.+ .....+.+.++++|+++.++..
T Consensus 29 ~m~kkILI~grG-eia~~iiraar~lGi~vVaV~s 62 (1236)
T 3va7_A 29 KPFETVLIANRG-EIAVRIMKTLKRMGIKSVAVYS 62 (1236)
T ss_dssp CSCSEEEECCCH-HHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCEEEEEcCC-HHHHHHHHHHHHCCCEEEEEEc
Confidence 344578888753 4566799999999999877743
No 429
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.70 E-value=1.4e+02 Score=22.01 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCH--HHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV--EELKR-KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 99 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~--~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P 99 (163)
+.+|++|.........+.+.....|..+..-++--..+ ..+.. ..||.+|+.. +..+ ...+++. .-++|
T Consensus 64 ~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~D----p~~d---~~ai~EA~~l~IP 136 (202)
T 3j20_B 64 PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTD----PRAD---HQAMREAVEIGIP 136 (202)
T ss_dssp SSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESC----TTTS---HHHHHHHHHHTCC
T ss_pred CCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeC----Cccc---hHHHHHHHHcCCC
Confidence 45799997655555566666666776543221110000 01111 2689999863 2222 2344442 34599
Q ss_pred EEEEe
Q 031223 100 LFGVC 104 (163)
Q Consensus 100 vLGIC 104 (163)
+.|+|
T Consensus 137 ~Ial~ 141 (202)
T 3j20_B 137 IVALV 141 (202)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99999
No 430
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=26.43 E-value=66 Score=24.65 Aligned_cols=48 Identities=6% Similarity=-0.029 Sum_probs=25.8
Q ss_pred CCChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
+....|+.+..+.+++ ++|.||-.+ ..-..+.+.|.+.|+++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~m---~~I~iIG~G-~mG~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 6 HHHHHSSGLVPRGSHM---MEVGFLGLG-IMGKAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp ------------CCCS---CEEEEECCS-HHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccccccccCcccccC---CEEEEECcc-HHHHHHHHHHHHCCCeEEEEeCC
Confidence 4444555554444433 579999763 34556888899999998887543
No 431
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=26.32 E-value=54 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
++.++|+|+..+ .....+.+.++++|+++.++..
T Consensus 4 ~~~k~ILI~g~g-~~~~~i~~a~~~~G~~vv~v~~ 37 (461)
T 2dzd_A 4 RRIRKVLVANRG-EIAIRVFRACTELGIRTVAIYS 37 (461)
T ss_dssp CCCSEEEECSCH-HHHHHHHHHHHHHTCEEEEEEC
T ss_pred CcCcEEEEECCc-HHHHHHHHHHHHcCCEEEEEEC
Confidence 344679998643 3445688999999999887643
No 432
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=26.30 E-value=1.1e+02 Score=24.53 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=48.1
Q ss_pred HhhhcCCCCCeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCC--CCCHHHH-------hccCCCEEEeCCCCCCCC
Q 031223 16 DDKKSKNNKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 16 ~~~~~~~~~~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~--~~~~~~~-------~~~~~dgvvl~GG~~~~~ 82 (163)
+-++..+. .|++||-... ++...+.+.|++.|+++.+++.- ..+.+.+ ...++|.||=.|| +++.
T Consensus 24 ~~~~~~g~-~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~ 101 (383)
T 3ox4_A 24 KDLNGSGF-KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPH 101 (383)
T ss_dssp HTTTTSCC-CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHH
T ss_pred HHHHHcCC-CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHH
Confidence 33344432 4677773211 13445777888889988776421 1233332 2347999997777 5666
Q ss_pred CChhHHHHHHH-------h-------CCCCCEEEEe
Q 031223 83 DSGISLQTVLE-------L-------GPTVPLFGVC 104 (163)
Q Consensus 83 d~~~~~~~i~~-------~-------~~~~PvLGIC 104 (163)
|..+....... + .+++|+..|-
T Consensus 102 D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IP 137 (383)
T 3ox4_A 102 DCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSIN 137 (383)
T ss_dssp HHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEE
T ss_pred HHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEe
Confidence 65444333321 1 2467877765
No 433
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=26.30 E-value=53 Score=24.33 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=39.9
Q ss_pred hHhhHHhhh--c--CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-----CCHHH----HhccCCCEEEeCCC
Q 031223 11 KSLYLDDKK--S--KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-----LTVEE----LKRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~--~--~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-----~~~~~----~~~~~~dgvvl~GG 77 (163)
.+.+++-+. . ...+.+|+++.-. .-...+.+.|++.|+++..+..+. .+.++ +...++|.|+++-+
T Consensus 116 ~e~L~~~l~~~~~~~~~~~~vL~~rg~-~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 194 (254)
T 4es6_A 116 SEALLALPAFQDSLRVHDPKVLIMRGE-GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSG 194 (254)
T ss_dssp HHHHHTCHHHHHHTCSSSCEEEEEECS-SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSH
T ss_pred HHHHHHhHhhcccccCCCCEEEEEcCC-ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCH
Confidence 445555554 2 4456789998643 234467889999999887654331 11111 22347899998543
No 434
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=26.27 E-value=1.9e+02 Score=22.65 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=38.9
Q ss_pred hhhHhhHHhhhcC-C-CCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh-------c-cCCCEE
Q 031223 9 ISKSLYLDDKKSK-N-NKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELK-------R-KNPRGV 72 (163)
Q Consensus 9 ~~~~~~~~~~~~~-~-~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~-------~-~~~dgv 72 (163)
...+.-++.++.. + ..+.+++|.-++. |..+-.++.++.|++.+.+... +.+.+++. . .+.+||
T Consensus 20 ~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GI 99 (300)
T 4a26_A 20 SELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGI 99 (300)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEE
Confidence 3445555555433 3 4566777754432 4555667778899998877632 23434432 1 368999
Q ss_pred Ee
Q 031223 73 LI 74 (163)
Q Consensus 73 vl 74 (163)
++
T Consensus 100 lV 101 (300)
T 4a26_A 100 IV 101 (300)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 435
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=26.25 E-value=2.1e+02 Score=21.54 Aligned_cols=58 Identities=10% Similarity=-0.054 Sum_probs=35.5
Q ss_pred CCCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeCC------------CCCHHHHhc--cCCCEEEeCCCCCCC
Q 031223 23 NKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRND------------ELTVEELKR--KNPRGVLISPGPGAP 81 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~~------------~~~~~~~~~--~~~dgvvl~GG~~~~ 81 (163)
.+++|+|.-. .++.+ .+++.|.+.|+++..+.-. ..+.+.+.. .++|.||-..|....
T Consensus 18 ~~~~vlVtGa-tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~ 90 (347)
T 4id9_A 18 GSHMILVTGS-AGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSW 90 (347)
T ss_dssp ---CEEEETT-TSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCS
T ss_pred CCCEEEEECC-CChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCc
Confidence 3456777764 35655 5888898899988776421 112333321 379999988886544
No 436
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=26.25 E-value=53 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=24.7
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
+++|+|+-++ .+-..+.+.|.+.|+++.++..+
T Consensus 4 ~~~viIiG~G-r~G~~va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 4 GMRVIIAGFG-RFGQITGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp CCSEEEECCS-HHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEECCC-HHHHHHHHHHHHCCCCEEEEECC
Confidence 3568888763 46777888888888888888654
No 437
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=26.21 E-value=20 Score=27.71 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=39.7
Q ss_pred CeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCCE
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv 100 (163)
.+|+|||........+...|.. .|+.+.........++.+....+|.||+-= ..|...+ .+.+.+++. ...+|+
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~~dlvl~D~--~mp~~~G~~~~~~l~~~~~~~~~~i 96 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDL--VMPGVDGLTLLAAYRGNPATRDIPI 96 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEES--BCSSSBHHHHHHHHTTSTTTTTSCE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHhcCcccCCCcE
Confidence 5799998766666667777753 576654432110011222234688777611 1111121 233444432 245788
Q ss_pred EEEe
Q 031223 101 FGVC 104 (163)
Q Consensus 101 LGIC 104 (163)
+-+.
T Consensus 97 i~~s 100 (358)
T 3bre_A 97 IVLS 100 (358)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 438
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=26.16 E-value=1e+02 Score=19.92 Aligned_cols=34 Identities=26% Similarity=0.187 Sum_probs=19.7
Q ss_pred HHHHHHHcCCE-EEEEeCCCCCHHHHhc--cCCCEEEeCC
Q 031223 40 LCQYMGELGYH-FEVYRNDELTVEELKR--KNPRGVLISP 76 (163)
Q Consensus 40 ~~~~l~~~G~~-~~v~~~~~~~~~~~~~--~~~dgvvl~G 76 (163)
+.+.+.+.|++ +++.... ..++.. .++|.||.+.
T Consensus 39 l~~~~~~~gi~~~~i~~~~---~~~~~~~~~~~DlIi~t~ 75 (110)
T 3czc_A 39 VENALRQLGVSDIESASCS---VGEAKGLASNYDIVVASN 75 (110)
T ss_dssp HHHHHHHTTCCCEEEEEEC---HHHHHHHGGGCSEEEEET
T ss_pred HHHHHHHcCCCeEEEEEee---HHHHhhccCCCcEEEECC
Confidence 44677778887 6554432 334332 3789666644
No 439
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=26.15 E-value=2.3e+02 Score=21.87 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCCCCeEEEEECCCChHHHHHHHHHHc-CCEEE-EEeCCC---------------CCHHHHh-ccCCCEEEeCCC
Q 031223 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFE-VYRNDE---------------LTVEELK-RKNPRGVLISPG 77 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~-v~~~~~---------------~~~~~~~-~~~~dgvvl~GG 77 (163)
|++++||.||-.+ ..-....+.+... ++++. ++..+. .+.+++. ..++|.|++.-.
T Consensus 2 M~~~~~vgiiG~G-~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp 75 (354)
T 3db2_A 2 MYNPVGVAAIGLG-RWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVP 75 (354)
T ss_dssp CCCCEEEEEECCS-HHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSC
T ss_pred CCCcceEEEEccC-HHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCC
Confidence 4556788888774 2444566667665 55544 222210 1233443 236899998544
No 440
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=26.00 E-value=15 Score=31.52 Aligned_cols=14 Identities=14% Similarity=-0.135 Sum_probs=9.5
Q ss_pred CCCeEEEEECCCCh
Q 031223 23 NKNPIIVIDNYDSF 36 (163)
Q Consensus 23 ~~~~Ilvid~~~~~ 36 (163)
..++|+|+..++..
T Consensus 71 ~~~~igIltsGGda 84 (555)
T 2f48_A 71 KALNIGIILSGGPA 84 (555)
T ss_dssp SCCEEEEEEBSSCC
T ss_pred CCcEEEEECcCCCc
Confidence 34689999776553
No 441
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=25.71 E-value=1.6e+02 Score=20.09 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=49.1
Q ss_pred hhHhhHHhhhcCCCCCeEEEEECCCCh--HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEE-eCCCCCCCCCCh
Q 031223 10 SKSLYLDDKKSKNNKNPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVL-ISPGPGAPQDSG 85 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ilvid~~~~~--~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvv-l~GG~~~~~d~~ 85 (163)
.++..++.+.+.. .+|.++-.+.+. ...+...|...|..+..+.........+.. ..=|.+| +|-+ + ...
T Consensus 37 ~i~~~~~~i~~a~--~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s-G---~t~ 110 (183)
T 2xhz_A 37 NFTLACEKMFWCK--GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS-G---ESS 110 (183)
T ss_dssp HHHHHHHHHHTCS--SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS-S---CCH
T ss_pred HHHHHHHHHHhCC--CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC-C---CCH
Confidence 5666777776542 479999886554 223555666678877665421100011111 1234444 3333 2 223
Q ss_pred hHHHHHHHh-CCCCCEEEEeh
Q 031223 86 ISLQTVLEL-GPTVPLFGVCM 105 (163)
Q Consensus 86 ~~~~~i~~~-~~~~PvLGIC~ 105 (163)
...+.++.+ +++.|+++|+-
T Consensus 111 ~~~~~~~~ak~~g~~vi~IT~ 131 (183)
T 2xhz_A 111 EITALIPVLKRLHVPLICITG 131 (183)
T ss_dssp HHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHHHHHHHHCCCCEEEEEC
Confidence 345556554 67899999985
No 442
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=25.54 E-value=1.5e+02 Score=23.13 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=40.5
Q ss_pred CCChhhHhhHHhhhcCC-CCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh--------ccCCC
Q 031223 6 AVPISKSLYLDDKKSKN-NKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELK--------RKNPR 70 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~--------~~~~d 70 (163)
+-....+.-++.++..+ ..+.+++|.-++. |..+-.++.++.|+..+.+... +.+.+++. +.+.+
T Consensus 14 ~i~~~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~ 93 (288)
T 1b0a_A 14 QVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTID 93 (288)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCc
Confidence 33445556666665554 4467777755433 3444556677899988876532 23433331 23689
Q ss_pred EEEe
Q 031223 71 GVLI 74 (163)
Q Consensus 71 gvvl 74 (163)
||++
T Consensus 94 GIlv 97 (288)
T 1b0a_A 94 GILV 97 (288)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 443
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=25.44 E-value=1.3e+02 Score=21.20 Aligned_cols=53 Identities=13% Similarity=-0.048 Sum_probs=28.8
Q ss_pred CeEEEEECC----CChHHHHHHHHHHcCCEEEEEeCCC-CCHHHH-hc-cCCCEEEeCCCC
Q 031223 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRNDE-LTVEEL-KR-KNPRGVLISPGP 78 (163)
Q Consensus 25 ~~Ilvid~~----~~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~-~~-~~~dgvvl~GG~ 78 (163)
|||+||... .|+...+.....+...++++...++ .+..+. +. ...|+||+ +.|
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~-~~P 60 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVADFNVEQEQSLLLQNDRIIL-EFP 60 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCTTCCHHHHHHHHHTCSEEEE-EEE
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCCcccHHHHHHHHHhCCEEEE-ECC
Confidence 468888432 3555554444433335677776542 233222 11 37999998 444
No 444
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=25.27 E-value=1.1e+02 Score=21.52 Aligned_cols=48 Identities=6% Similarity=-0.161 Sum_probs=27.8
Q ss_pred hccCCCEEEeCCCCCCCCC-ChhHHHHHHH-hCCCCCEEEEehHHHHHHH
Q 031223 65 KRKNPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGE 112 (163)
Q Consensus 65 ~~~~~dgvvl~GG~~~~~d-~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~ 112 (163)
...++|.||.+..|..... ..+...+.|. ...++|++--=-++..+..
T Consensus 79 ~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ 128 (152)
T 1b93_A 79 SEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQ 128 (152)
T ss_dssp HTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHT
T ss_pred HCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 3458999999888644322 2233333333 3678998754445555443
No 445
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=25.24 E-value=15 Score=31.17 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=25.0
Q ss_pred cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE-------------ehHHHHHHH
Q 031223 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI-------------C~G~QlLa~ 112 (163)
.+.|++|+-||.++......+.+.+.+..-++|+.|| |+|+.-.+.
T Consensus 188 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~ 246 (487)
T 2hig_A 188 LGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVE 246 (487)
T ss_dssp HTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHH
Confidence 3677777777754332222233333333335777775 888876544
No 446
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=25.03 E-value=1.2e+02 Score=23.33 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=35.2
Q ss_pred CeEEEEECCCChHH-HHHHHHHHcCC-EEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCC
Q 031223 25 NPIIVIDNYDSFTY-NLCQYMGELGY-HFEVYRNDELTVEELKR--KNPRGVLISPGPGAP 81 (163)
Q Consensus 25 ~~Ilvid~~~~~~~-~~~~~l~~~G~-~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~ 81 (163)
|+|+|.-.. ++.+ .+.+.|.+.|. ++..+... .+.+.+.. .++|.||-..|...+
T Consensus 1 M~VlVtGat-G~iG~~l~~~L~~~g~~~v~~~d~~-~d~~~l~~~~~~~d~Vih~a~~~~~ 59 (369)
T 3st7_A 1 MNIVITGAK-GFVGKNLKADLTSTTDHHIFEVHRQ-TKEEELESALLKADFIVHLAGVNRP 59 (369)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHHCCCEEEECCTT-CCHHHHHHHHHHCSEEEECCCSBCT
T ss_pred CEEEEECCC-CHHHHHHHHHHHhCCCCEEEEECCC-CCHHHHHHHhccCCEEEECCcCCCC
Confidence 478887654 4554 58888888887 66555431 34444432 369999988776544
No 447
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=24.96 E-value=2.5e+02 Score=22.03 Aligned_cols=82 Identities=10% Similarity=0.174 Sum_probs=46.4
Q ss_pred hhcCCCCCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC-------ChhH-H
Q 031223 18 KKSKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGIS-L 88 (163)
Q Consensus 18 ~~~~~~~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d-------~~~~-~ 88 (163)
-...+...+|.+.+....+.+ .+...|.+.|++++++... ....+- .++|.||+ |- ..... .+.. .
T Consensus 141 A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds--a~~~~m-~~vd~Viv-GA-d~i~~nG~v~nkiGT~~i 215 (315)
T 3ecs_A 141 AVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA--AVGYIM-EKADLVIV-GA-EGVVENGGIINKIGTNQM 215 (315)
T ss_dssp HHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG--GHHHHG-GGCSEEEE-EC-SEECTTSCEEEETTHHHH
T ss_pred HHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh--HHHHHH-HhCCEEEE-Cc-eEEecCCCeeehhhhHHH
Confidence 344556667777776554433 4678888999999888532 222221 26888877 43 22221 1222 2
Q ss_pred HHHHHhCCCCCEEEEeh
Q 031223 89 QTVLELGPTVPLFGVCM 105 (163)
Q Consensus 89 ~~i~~~~~~~PvLGIC~ 105 (163)
..+.+ ..++|++-.|-
T Consensus 216 Al~Ak-~~~vP~~V~a~ 231 (315)
T 3ecs_A 216 AVCAK-AQNKPFYVVAE 231 (315)
T ss_dssp HHHHH-HTTCCEEEECC
T ss_pred HHHHH-HhCCCEEEEec
Confidence 22222 35699997663
No 448
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.89 E-value=2.3e+02 Score=21.61 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCChHHHHHHHHHH-c-CCEEEEEeC------CCCCHHH-----------HhccCCCEEEeCCCCCCCCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGE-L-GYHFEVYRN------DELTVEE-----------LKRKNPRGVLISPGPGAPQD 83 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~-~-G~~~~v~~~------~~~~~~~-----------~~~~~~dgvvl~GG~~~~~d 83 (163)
+.++|.|+|.+-+-... .+.+++ + ..++..+.. -..+.++ +...++|.|||.=- .
T Consensus 23 ~~~~IgvfDSGvGGLtv-~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACN-----T 96 (274)
T 3uhf_A 23 NAMKIGVFDSGVGGLSV-LKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACN-----T 96 (274)
T ss_dssp SCCEEEEEESSSTTHHH-HHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCH-----H
T ss_pred CCCeEEEEECCCChHHH-HHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCC-----C
Confidence 34679999987554433 344433 3 445554432 1223333 22347899998221 1
Q ss_pred Chh-HHHHHHHhCCCCCEEEEe-hHHHHHHHH
Q 031223 84 SGI-SLQTVLELGPTVPLFGVC-MGLQCIGEA 113 (163)
Q Consensus 84 ~~~-~~~~i~~~~~~~PvLGIC-~G~QlLa~a 113 (163)
... ..+.+++. -++|++||- -+.+.++..
T Consensus 97 a~~~al~~lr~~-~~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 97 ASAYALDALRAK-AHFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp HHHHSHHHHHHH-CSSCEECSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh-cCCCEEcCCHHHHHHHHHh
Confidence 111 14556653 149999987 666666655
No 449
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=24.82 E-value=1.3e+02 Score=20.45 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=26.9
Q ss_pred HhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCCEEEEehHHHHHHH
Q 031223 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGE 112 (163)
Q Consensus 64 ~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIC~G~QlLa~ 112 (163)
+...++|.||.+..+.. ....-...||+ .+.++|++=-=-+++.+..
T Consensus 92 i~~g~i~lVInt~~~~~--~~~~d~~~iRR~Av~~~IP~~T~~~tA~a~~~ 140 (143)
T 2yvq_A 92 IRDGSIDLVINLPNNNT--KFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAE 140 (143)
T ss_dssp HHTTSCCEEEECCCCCG--GGHHHHHHHHHHHHHTTCCEECSHHHHHHHHH
T ss_pred HHCCCceEEEECCCCCC--cCCccHHHHHHHHHHhCCCeEcCHHHHHHHHH
Confidence 44568999999886531 11111234555 3678998754444544444
No 450
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=24.72 E-value=1.2e+02 Score=25.06 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=34.4
Q ss_pred EEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehH-------HHHHHHHhCCeeeeCC
Q 031223 71 GVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG-------LQCIGEAFGGKIVRSP 122 (163)
Q Consensus 71 gvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G-------~QlLa~a~Gg~v~~~~ 122 (163)
.|+|+-|..+..+...+...++....++++..|.+| ++-||..-||+.....
T Consensus 183 IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~ 241 (464)
T 4fx5_A 183 AILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIR 241 (464)
T ss_dssp EEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEES
T ss_pred EEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcC
Confidence 466777754332222344445555678999888888 6788888899877654
No 451
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=24.65 E-value=1.9e+02 Score=23.38 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhCC
Q 031223 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 116 (163)
Q Consensus 37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~Gg 116 (163)
...+.+.|++.|-...++-..+.+++.+.+.++|+.|+.+=|....|. -.++ .+|+|- -.-+..|+|.
T Consensus 283 ~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~iD~fV~vaCPrlsidd------~~~F--~KPvLT----PyE~evAL~~ 350 (378)
T 3lzd_A 283 AKRIVKLLKKHGREARLIVMNDVNYHKLEGFPFEAYVVVACPRVPLDD------YGAW--RKPVLT----PKEVEILLGL 350 (378)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSCCHHHHTTSCCSEEEECSCTHHHHSC------CSCC--SSCEEC----HHHHHHHTTS
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCCEEEEecCCCccccc------hhhC--CCcccC----HHHHHHHhCC
Confidence 345677778899888777666678888887789999998876321111 1123 378876 4566677776
Q ss_pred ee
Q 031223 117 KI 118 (163)
Q Consensus 117 ~v 118 (163)
+-
T Consensus 351 ~~ 352 (378)
T 3lzd_A 351 RE 352 (378)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 452
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=24.61 E-value=74 Score=23.64 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCCEEEEehHHHHH
Q 031223 68 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCI 110 (163)
Q Consensus 68 ~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~PvLGIC~G~QlL 110 (163)
+.|+|.++=||++..-..--....+. +..++|+.||+.-.-+.
T Consensus 55 did~Iav~~GPGsftglRig~~~ak~la~~~~~Pl~~V~~l~a~a 99 (231)
T 2gel_A 55 EIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMA 99 (231)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHHTTTCCEEEECHHHHHH
T ss_pred HCCEEEEEcCCChhHhHHHHHHHHHHHHHHcCCCEEEeccHHHHH
Confidence 68999999999876421111222233 35679999999644333
No 453
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=24.36 E-value=98 Score=24.92 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=30.3
Q ss_pred CeEEEEECCCChHH-----HHHHHHHHcCCEEEEEeCCC--CCHHHH-------hccCCCEEEeCCCCCCCCCCh
Q 031223 25 NPIIVIDNYDSFTY-----NLCQYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSG 85 (163)
Q Consensus 25 ~~Ilvid~~~~~~~-----~~~~~l~~~G~~~~v~~~~~--~~~~~~-------~~~~~dgvvl~GG~~~~~d~~ 85 (163)
.|++||-...+... .+.+.|+ |+++.+++.-+ .+.+.+ ...++|.||=.|| +++.|..
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~A 122 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGT 122 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHH
Confidence 57888853222332 2333343 78877775321 223332 2347899995566 4444443
No 454
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=24.35 E-value=1.2e+02 Score=19.37 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=21.2
Q ss_pred CeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
++|+|+-. +..-..+.+.|.+.|.++.++..
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEC
Confidence 57888854 23444577888888888777754
No 455
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=24.33 E-value=2.5e+02 Score=21.77 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=40.8
Q ss_pred HHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC
Q 031223 15 LDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (163)
Q Consensus 15 ~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG 77 (163)
+++..-.-.+.+++||-.+...-..+...|...|+++.+......++++.. .+.|-||..=|
T Consensus 152 L~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~-~~ADIVI~Avg 213 (285)
T 3l07_A 152 LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHT-TKADILIVAVG 213 (285)
T ss_dssp HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH-TTCSEEEECCC
T ss_pred HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhc-ccCCEEEECCC
Confidence 333333446678999986544566788888899999988864433454432 37898876444
No 456
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=24.27 E-value=97 Score=24.48 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=39.2
Q ss_pred CeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCC-CCCHHHH-------hccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
.|++||-.... +...+.+.|++.|+++...-++ +.+.+.+ ...++|.||=.|| +++.|..+.....
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~-- 108 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAVADE-- 108 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHHHH--
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHHHh--
Confidence 57888853222 2334666777788877422222 2222222 2347899995566 4444544433322
Q ss_pred hCCCCCEEEEe
Q 031223 94 LGPTVPLFGVC 104 (163)
Q Consensus 94 ~~~~~PvLGIC 104 (163)
+++|+..|=
T Consensus 109 --~~~p~i~IP 117 (370)
T 1jq5_A 109 --LDAYIVIVP 117 (370)
T ss_dssp --HTCEEEEEE
T ss_pred --cCCCEEEec
Confidence 346766554
No 457
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=24.25 E-value=2.5e+02 Score=21.67 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=33.0
Q ss_pred CCCeEEEEECCCCh-----HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCC
Q 031223 23 NKNPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (163)
Q Consensus 23 ~~~~Ilvid~~~~~-----~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~G 76 (163)
+.|||+++-.. +. .-.+.+.|++.|.++.++.. ...+.+....+..+-+.+
T Consensus 19 ~~MrIl~~~~~-~~Ghv~~~~~La~~L~~~GheV~v~~~--~~~~~~~~~G~~~~~~~~ 74 (398)
T 3oti_A 19 RHMRVLFVSSP-GIGHLFPLIQLAWGFRTAGHDVLIAVA--EHADRAAAAGLEVVDVAP 74 (398)
T ss_dssp CCCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEEES--SCHHHHHTTTCEEEESST
T ss_pred hcCEEEEEcCC-CcchHhHHHHHHHHHHHCCCEEEEecc--chHHHHHhCCCeeEecCC
Confidence 34789999653 22 22488999999999998876 233444444566555543
No 458
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=24.19 E-value=2.2e+02 Score=21.72 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCeEEEEECCCCh----HHHHHHHHHHcCCEEEEE-eC--CCCC----HHHHhccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223 24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVY-RN--DELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (163)
Q Consensus 24 ~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~-~~--~~~~----~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~ 92 (163)
..+|++|-..+.+ ...+.+.+++.|.++... .+ ...+ ...+...++|+|++.+.. .+...+.+.++
T Consensus 143 ~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~---~~a~~~~~~~~ 219 (392)
T 3lkb_A 143 GAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVA---GPVANILKDAK 219 (392)
T ss_dssp TCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHHH
T ss_pred CCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHHH
Confidence 3689998543333 224677888889876532 22 1122 223334589999985532 11122344445
Q ss_pred HhCCCCCEEEE
Q 031223 93 ELGPTVPLFGV 103 (163)
Q Consensus 93 ~~~~~~PvLGI 103 (163)
+..-+.|++|.
T Consensus 220 ~~g~~~~~~~~ 230 (392)
T 3lkb_A 220 RLGLKMRHLGA 230 (392)
T ss_dssp HTTCCCEEEEC
T ss_pred HcCCCceEEEe
Confidence 55556898886
No 459
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=24.06 E-value=2.4e+02 Score=21.49 Aligned_cols=30 Identities=7% Similarity=-0.053 Sum_probs=20.6
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEE
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEV 53 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v 53 (163)
.+||.||-.++.......+.+.+.+.++..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lva 32 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVA 32 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEE
Confidence 468999988544555677777777766553
No 460
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=24.05 E-value=58 Score=24.03 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=35.8
Q ss_pred CCCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeC---CCCCHHHHhc----cCCCEEEeCCCCCC
Q 031223 23 NKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRN---DELTVEELKR----KNPRGVLISPGPGA 80 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~---~~~~~~~~~~----~~~dgvvl~GG~~~ 80 (163)
|+|+|+|.-.. ++.+ .+.+.|.+.|+++..+.- |..+.+.+.. .++|.||-..|...
T Consensus 4 M~m~ilVtGat-G~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~ 68 (287)
T 3sc6_A 4 MKERVIITGAN-GQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTK 68 (287)
T ss_dssp -CEEEEEESTT-SHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred ceeEEEEECCC-CHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCcccC
Confidence 34578888753 5544 588888888988877642 2223333321 26999998887654
No 461
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.96 E-value=1.9e+02 Score=21.28 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=36.7
Q ss_pred CeEEEEECCC-ChH----HHHHHHHHHcCC---EEEE--EeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhH
Q 031223 25 NPIIVIDNYD-SFT----YNLCQYMGELGY---HFEV--YRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGIS 87 (163)
Q Consensus 25 ~~Ilvid~~~-~~~----~~~~~~l~~~G~---~~~v--~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~ 87 (163)
.+|.||..-. .|- ..+.+.+++.|+ .+.+ ...+ .+.+ .+...++||||++|.+ ..
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~-------~~ 74 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSE-GDQSKVATMSKQLVANGNDLVVGIATP-------AA 74 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECT-TCHHHHHHHHHHHTTSSCSEEEEESHH-------HH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCcH-------HH
Confidence 3577773221 232 236677888899 6544 3332 2221 2334589999997632 11
Q ss_pred HHHHHHhCCCCCEEEE
Q 031223 88 LQTVLELGPTVPLFGV 103 (163)
Q Consensus 88 ~~~i~~~~~~~PvLGI 103 (163)
..+.....++|+.-+
T Consensus 75 -~~~~~~~~~iPvV~~ 89 (295)
T 3lft_A 75 -QGLASATKDLPVIMA 89 (295)
T ss_dssp -HHHHHHCSSSCEEEE
T ss_pred -HHHHHcCCCCCEEEE
Confidence 122223466787764
No 462
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=23.91 E-value=75 Score=20.04 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=25.2
Q ss_pred hhhHhhHHhh-hcCCCCCeEEEEECCCChHHHHHHHHHHcCCE
Q 031223 9 ISKSLYLDDK-KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYH 50 (163)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~ 50 (163)
.++..+.++. +.......|+++...+.........|++.|+.
T Consensus 36 ip~~~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~ 78 (106)
T 3hix_A 36 MPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFE 78 (106)
T ss_dssp CCGGGHHHHHHHHSCTTSCEEEECSSHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEECCCChHHHHHHHHHHcCCc
Confidence 3455555554 34444456777765433455577788888884
No 463
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.90 E-value=1.7e+02 Score=19.63 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCCeEEEEECC---CChHHHHHHHHHHcCCEEEEEeC
Q 031223 23 NKNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 23 ~~~~Ilvid~~---~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
...+|+||-.. +..-..+.+.|.+.|+++..+.+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCC
Confidence 34679999542 34566788889999997544433
No 464
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.87 E-value=2e+02 Score=20.69 Aligned_cols=102 Identities=9% Similarity=0.013 Sum_probs=54.1
Q ss_pred ChhhHhhHHhhhc--CCCCCeEEEEECCCCh--HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEe-CCCCCCC
Q 031223 8 PISKSLYLDDKKS--KNNKNPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLI-SPGPGAP 81 (163)
Q Consensus 8 ~~~~~~~~~~~~~--~~~~~~Ilvid~~~~~--~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl-~GG~~~~ 81 (163)
.......++.+.. .....+|.++-.+.++ ...+...|...|..+..+.........+.. ..=|.+|+ |.+ +
T Consensus 41 ~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~S-G-- 117 (220)
T 3etn_A 41 TDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNS-G-- 117 (220)
T ss_dssp CTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSS-S--
T ss_pred HHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCC-C--
Confidence 3455566666644 2224679999876554 223566777889887776432110011111 12344444 333 2
Q ss_pred CCChhHHHHHHHh-C--CCCCEEEEeh-HHHHHHHH
Q 031223 82 QDSGISLQTVLEL-G--PTVPLFGVCM-GLQCIGEA 113 (163)
Q Consensus 82 ~d~~~~~~~i~~~-~--~~~PvLGIC~-G~QlLa~a 113 (163)
......+.++.+ + ++.|+++|+- .---|+..
T Consensus 118 -~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~ 152 (220)
T 3etn_A 118 -KTREIVELTQLAHNLNPGLKFIVITGNPDSPLASE 152 (220)
T ss_dssp -CCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHH
T ss_pred -CCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHh
Confidence 123445555554 4 7899999984 33344444
No 465
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=23.84 E-value=1.1e+02 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=32.0
Q ss_pred CCeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeC
Q 031223 24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLIS 75 (163)
Q Consensus 24 ~~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~ 75 (163)
+|||+||--+.|- ...+.+.|++.|+++..+..+.. ...+.. .++|.++..
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~-~~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEK-MDLIEKAKDIDFALLA 62 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSG-GGHHHHTTTCSEEEEC
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCc-hhHHHhccCCCEEEEe
Confidence 5789999754332 22366788889999888876421 111222 378988864
No 466
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=23.81 E-value=51 Score=25.57 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeC
Q 031223 23 NKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 23 ~~~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~ 56 (163)
+++||+||--+.+. ...+.++|++.|+++..+..
T Consensus 2 ~~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~ 43 (343)
T 1e4e_A 2 NRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGI 43 (343)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEE
Confidence 35789999655442 22367788888998887653
No 467
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=23.69 E-value=2.3e+02 Score=22.03 Aligned_cols=33 Identities=3% Similarity=-0.140 Sum_probs=18.4
Q ss_pred hcCCCCCeEEEEECCCChHHHHHHHHH-H-cCCEEE
Q 031223 19 KSKNNKNPIIVIDNYDSFTYNLCQYMG-E-LGYHFE 52 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~-~-~G~~~~ 52 (163)
...|+++||.||-.+ ..-....+.+. . .++++.
T Consensus 18 ~~~m~~~rvgiIG~G-~~g~~~~~~l~~~~~~~~lv 52 (357)
T 3ec7_A 18 YFQGMTLKAGIVGIG-MIGSDHLRRLANTVSGVEVV 52 (357)
T ss_dssp ----CCEEEEEECCS-HHHHHHHHHHHHTCTTEEEE
T ss_pred ccCCCeeeEEEECCc-HHHHHHHHHHHhhCCCcEEE
Confidence 444556789999874 34445666666 3 356654
No 468
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=23.69 E-value=36 Score=25.21 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEE
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~ 54 (163)
.+.+|+|++....+...+.++|...|+++..+
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~ 41 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTY 41 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEEC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34689999876667778899999999877654
No 469
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=23.54 E-value=1.9e+02 Score=21.65 Aligned_cols=63 Identities=10% Similarity=-0.091 Sum_probs=39.0
Q ss_pred hHhhHHhhhcCCCCC-eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CH---HH----HhccCCCEEEeCCC
Q 031223 11 KSLYLDDKKSKNNKN-PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TV---EE----LKRKNPRGVLISPG 77 (163)
Q Consensus 11 ~~~~~~~~~~~~~~~-~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~---~~----~~~~~~dgvvl~GG 77 (163)
.+.+++-+.. +. +|++...... ...+.+.|++.|+++..++.+.. .. +. +...++|.|+++-+
T Consensus 145 ~e~L~~~l~~---g~~~vLi~r~~~~-~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~ 217 (286)
T 3d8t_A 145 SKSLLPLLPQ---GRGVAALQLYGKP-LPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAA 217 (286)
T ss_dssp GGGGGGGCCC---CCSEEEEECSSSC-CHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSH
T ss_pred HHHHHHHHHc---CCceEEEEccCcc-cHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECH
Confidence 3444444433 56 8999875433 44688999999999887654321 11 11 22346899998654
No 470
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=23.48 E-value=1.3e+02 Score=23.89 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=38.4
Q ss_pred CeEEEEECCCCh--HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEE
Q 031223 25 NPIIVIDNYDSF--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (163)
Q Consensus 25 ~~Ilvid~~~~~--~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvL 101 (163)
-+||+|+.-+.. ...+.|.|..+.. ..-++ +..|||+ |.+........+.+.+++. ..++||+
T Consensus 246 g~ILfLEdv~E~p~~y~idRmL~qL~~-----------aG~f~--~~~Giil-G~~~~~~~~~~~~~vl~~~l~~~iPV~ 311 (346)
T 4eys_A 246 GKILLLETSEEKPKPEDFKKMLLTLKD-----------TGIFA--VINGLLV-GKPMDETFHDDYKEALLDIIDSNIPIV 311 (346)
T ss_dssp TCEEEEECCTTCCCHHHHHHHHHHHHT-----------TTGGG--TCSEEEE-ECCGGGTTHHHHHHHHHHHSCTTSCEE
T ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHH-----------cCCcc--cCCEEEE-ecCCCCCcchhHHHHHHHHHcCCCcEE
Confidence 469999665443 3666676655321 01122 6889999 5543222222356667663 3389987
Q ss_pred -EEehHH
Q 031223 102 -GVCMGL 107 (163)
Q Consensus 102 -GIC~G~ 107 (163)
++=+||
T Consensus 312 ~~~~~GH 318 (346)
T 4eys_A 312 YNLNVGH 318 (346)
T ss_dssp EEESCSS
T ss_pred ECCCCCC
Confidence 444554
No 471
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=23.27 E-value=2.8e+02 Score=22.48 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=46.7
Q ss_pred CeEEEEECCCChHH---HHHHHHHHc-CCEEEEEeCCCCCHHHH---hccCCCEEEeCCCCCCCC--C------Chh--H
Q 031223 25 NPIIVIDNYDSFTY---NLCQYMGEL-GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQ--D------SGI--S 87 (163)
Q Consensus 25 ~~Ilvid~~~~~~~---~~~~~l~~~-G~~~~v~~~~~~~~~~~---~~~~~dgvvl~GG~~~~~--d------~~~--~ 87 (163)
..+++||...+... .+++++++. +..+.+-.. .+.++. ....+|+|++..|+++.. . .+. .
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V--~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~a 234 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV--VTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITA 234 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEE--CSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeec--CCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHH
Confidence 45777765433332 345556554 665543111 233332 235799999954555321 0 111 1
Q ss_pred HHHHHH-h-CCCCCEEE---EehHHHHH-HHHhCCeeee
Q 031223 88 LQTVLE-L-GPTVPLFG---VCMGLQCI-GEAFGGKIVR 120 (163)
Q Consensus 88 ~~~i~~-~-~~~~PvLG---IC~G~QlL-a~a~Gg~v~~ 120 (163)
...+.+ + ..++|+++ |..+-.+. +.++|+.-..
T Consensus 235 l~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 235 IEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 233333 2 24799995 77777766 4467876544
No 472
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.20 E-value=2e+02 Score=22.12 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=31.4
Q ss_pred CCCCeEEEEECCCChHH-HHHHHHHHc-CCEEEEE-eCCC--------CCHHHHhc--cCCCEEEeCCC
Q 031223 22 NNKNPIIVIDNYDSFTY-NLCQYMGEL-GYHFEVY-RNDE--------LTVEELKR--KNPRGVLISPG 77 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~-~~~~~l~~~-G~~~~v~-~~~~--------~~~~~~~~--~~~dgvvl~GG 77 (163)
|.++||.||-.+ ..-. ...+.+.+. ++++.-+ ..+. .+.+++.. .++|+|+|.-.
T Consensus 23 M~~~rvgiiG~G-~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 23 MSPINLAIVGVG-KIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CCCEEEEEECCS-HHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred CCCceEEEEecC-HHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 345799999874 2333 466777764 5555432 2211 23455432 37999999543
No 473
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=23.15 E-value=87 Score=22.95 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=31.0
Q ss_pred hhHhhHHhh-hcCCCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeC
Q 031223 10 SKSLYLDDK-KSKNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~ 56 (163)
.|+...+.+ +....+.+|++++.+|.. ...+.+.+++.|++++++|-
T Consensus 63 ~~~~~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPG 114 (235)
T 1ve2_A 63 PQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPG 114 (235)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEECC
T ss_pred CHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEECC
Confidence 355555544 222334679999887764 23466778888999999985
No 474
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=23.10 E-value=83 Score=22.89 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=22.1
Q ss_pred HhhHHhhhcCCCCCeEEEE-ECCC-ChHHHHHHHHHH--cCCEEEEE
Q 031223 12 SLYLDDKKSKNNKNPIIVI-DNYD-SFTYNLCQYMGE--LGYHFEVY 54 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~Ilvi-d~~~-~~~~~~~~~l~~--~G~~~~v~ 54 (163)
+.+|-|.++|. |||+|= |+.+ .....+.++|++ .|++++=+
T Consensus 12 ~~~~~~~~~M~--MkIaIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~ 56 (179)
T 3k7p_A 12 SGLVPRGSHMT--RRVAIGTDHPAFAIHENLILYVKEAGDEFVPVYC 56 (179)
T ss_dssp ---------CC--EEEEEEECTGGGGGHHHHHHHHHHTCTTEEEEEC
T ss_pred cCcccccccCc--eEEEEEECchHHHHHHHHHHHHHhcCCCCeEEEc
Confidence 45666666665 577776 5532 246679999999 89877654
No 475
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.10 E-value=1.6e+02 Score=24.41 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCCEEEeCC-CCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223 68 NPRGVLISP-GPGAPQDSGISLQTVLEL-GPTVPLFGVC 104 (163)
Q Consensus 68 ~~dgvvl~G-G~~~~~d~~~~~~~i~~~-~~~~PvLGIC 104 (163)
.++||||-| |.++.. ..+.+.++++ ++++||.-+-
T Consensus 325 g~~GiVleg~G~Gn~p--~~~~~~l~~a~~~Gi~VV~~S 361 (435)
T 2d6f_A 325 GYRGIVIEGTGLGHCP--DTLIPVIGEAHDMGVPVAMTS 361 (435)
T ss_dssp TCSEEEEEEBTTTBCC--GGGHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEecCCCCCcC--HHHHHHHHHHHhCCCEEEEeC
Confidence 588999855 445443 4566677764 6789987443
No 476
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=23.00 E-value=90 Score=23.94 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=28.9
Q ss_pred CCeEEEEECCCChHHHHHHHHHH--cCCEEEEEeCCC-CCHHHHhccCCCEEEeCC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRNDE-LTVEELKRKNPRGVLISP 76 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~--~G~~~~v~~~~~-~~~~~~~~~~~dgvvl~G 76 (163)
.|+|+++.+...|.....+.-.+ .+.++.++.... ...+.+...++|.+|+.|
T Consensus 30 ~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~~~~pDliv~~~ 85 (260)
T 1zgh_A 30 LMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLINPEYILFPH 85 (260)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHHHHHCCSEEEESS
T ss_pred ceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHhcCCCEEEEec
Confidence 37788886643344333332222 356666664321 234555556899888754
No 477
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=22.90 E-value=1.1e+02 Score=28.59 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~ 56 (163)
++..+|+|++.+ .....+.+.++++|+.+..+..
T Consensus 2 ~~~kkVLIagrG-eia~riiraa~elGi~vVav~s 35 (1150)
T 3hbl_A 2 KQIKKLLVANRG-EIAIRIFRAAAELDISTVAIYS 35 (1150)
T ss_dssp -CCCEEEECCCH-HHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEEc
Confidence 344678887643 3556799999999999887753
No 478
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=22.86 E-value=93 Score=25.66 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=38.9
Q ss_pred eEEEEECCCC---hHHHHHHHHHHcCCEEE--EEeCCCCCHHHH-------hccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223 26 PIIVIDNYDS---FTYNLCQYMGELGYHFE--VYRNDELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (163)
Q Consensus 26 ~Ilvid~~~~---~~~~~~~~l~~~G~~~~--v~~~~~~~~~~~-------~~~~~dgvvl~GG~~~~~d~~~~~~~i~~ 93 (163)
|++||-.... +...+.+.|++.|+++. ++.. +.+.+.+ .. ++|.||=.|| +++.|..+....
T Consensus 93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~g-e~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~iA~--- 166 (450)
T 1ta9_A 93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGG-EASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKYIAH--- 166 (450)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECS-CCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHHHHH---
T ss_pred EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCC-CCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHHHHH---
Confidence 7888742211 23446677778888763 3332 2233222 23 7899995566 444444333322
Q ss_pred hCCCCCEEEEe
Q 031223 94 LGPTVPLFGVC 104 (163)
Q Consensus 94 ~~~~~PvLGIC 104 (163)
.+++|+..|=
T Consensus 167 -~~giP~I~IP 176 (450)
T 1ta9_A 167 -SMNLPSIICP 176 (450)
T ss_dssp -HTTCCEEEEE
T ss_pred -hcCCCEEEEe
Confidence 2467877665
No 479
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=22.63 E-value=1.3e+02 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.+.+|+||..+ .....+.++++++|+++.++.++
T Consensus 13 ~~k~IlIlG~G-~~g~~la~aa~~~G~~vi~~d~~ 46 (389)
T 3q2o_A 13 PGKTIGIIGGG-QLGRMMALAAKEMGYKIAVLDPT 46 (389)
T ss_dssp TTSEEEEECCS-HHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHcCCEEEEEeCC
Confidence 44689999754 45667899999999999888753
No 480
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=22.61 E-value=2.5e+02 Score=21.07 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=45.5
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHH----HHHHHHHHcCCEEEE---EeCCCCCH----HHHhccCCCEEEeCCCCCCCC
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTY----NLCQYMGELGYHFEV---YRNDELTV----EELKRKNPRGVLISPGPGAPQ 82 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~----~~~~~l~~~G~~~~v---~~~~~~~~----~~~~~~~~dgvvl~GG~~~~~ 82 (163)
.++-+... ...+|++|...+.+.. .+.+.+++.|.++.. ++....+. ..+...++|+|++.+.. .
T Consensus 130 ~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~---~ 205 (358)
T 3hut_A 130 NAAWMIGD-GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAY---E 205 (358)
T ss_dssp HHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCH---H
T ss_pred HHHHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCc---h
Confidence 33443333 4468999953333322 366678888987652 22222222 22333479999885431 1
Q ss_pred CChhHHHHHHHhCCCCCEEEE
Q 031223 83 DSGISLQTVLELGPTVPLFGV 103 (163)
Q Consensus 83 d~~~~~~~i~~~~~~~PvLGI 103 (163)
+...+.+.+++..-++|++|.
T Consensus 206 ~a~~~~~~~~~~g~~~p~~~~ 226 (358)
T 3hut_A 206 DAAPFLRALRARGSALPVYGS 226 (358)
T ss_dssp HHHHHHHHHHHTTCCCCEEEC
T ss_pred HHHHHHHHHHHcCCCCcEEec
Confidence 111234445555556898875
No 481
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.34 E-value=1.1e+02 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=29.8
Q ss_pred hHhhHHhhhc-CCCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeC
Q 031223 11 KSLYLDDKKS-KNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRN 56 (163)
Q Consensus 11 ~~~~~~~~~~-~~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~ 56 (163)
|....+.+.. ...+.+|+++-.+|.. ...+.+.+++.|++++++|-
T Consensus 80 ~~~~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPG 130 (232)
T 2qbu_A 80 WDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPG 130 (232)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCC
Confidence 5555554421 2234568888666553 34577888889999999984
No 482
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=22.32 E-value=90 Score=20.29 Aligned_cols=7 Identities=14% Similarity=-0.088 Sum_probs=3.2
Q ss_pred CCCEEEe
Q 031223 68 NPRGVLI 74 (163)
Q Consensus 68 ~~dgvvl 74 (163)
+++-.++
T Consensus 108 gi~v~vi 114 (117)
T 3hh1_A 108 GLPVVPV 114 (117)
T ss_dssp TCCEEEE
T ss_pred CCcEEEe
Confidence 3444444
No 483
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=22.28 E-value=68 Score=26.46 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=28.8
Q ss_pred hhHHhhhcCCCCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 13 LYLDDKKSKNNKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 13 ~~~~~~~~~~~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
-+++++... .+.+|+|+ |...|-...+.+.|.+.|+++.++++.
T Consensus 322 ~v~~~i~~~-~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~ 374 (432)
T 3pid_A 322 FIADSILAR-KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPV 374 (432)
T ss_dssp HHHHHHHHT-CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHhh-cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCC
Confidence 345555333 35689999 334444556889999999999999764
No 484
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=22.27 E-value=3.1e+02 Score=22.14 Aligned_cols=86 Identities=6% Similarity=-0.044 Sum_probs=49.4
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHH--HHHHHHHcCCEEEEEeCCCCCHHH-HhccCCCEEEeCCCCCCCCCC------
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQDS------ 84 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~--~~~~l~~~G~~~~v~~~~~~~~~~-~~~~~~dgvvl~GG~~~~~d~------ 84 (163)
++......+...+|.+.+-...+.+. ....|.+.|++++++... ...- +...++|.||+ |- ......
T Consensus 201 ~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Ds--a~~~~M~~~~Vd~ViV-GA-D~V~aNG~v~NK 276 (383)
T 2a0u_A 201 VVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDG--AASSLMLNRKIDAVVV-GA-DRICQNGDTANK 276 (383)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG--GHHHHHHHSCCCEEEE-CC-SEECTTCCEEEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehh--HHHHHhhcCCCCEEEE-Cc-cEEecCCCEeec
Confidence 44444555556677777766555552 577888999999888532 2222 23235898888 43 322221
Q ss_pred -hhH-HHHHHHhCCCCCEEEEe
Q 031223 85 -GIS-LQTVLELGPTVPLFGVC 104 (163)
Q Consensus 85 -~~~-~~~i~~~~~~~PvLGIC 104 (163)
+.. ...+.+ ..++|++-.|
T Consensus 277 iGTy~lAl~Ak-~~~vPfyV~a 297 (383)
T 2a0u_A 277 IGTYNLAVSAK-FHGVKLYVAA 297 (383)
T ss_dssp TTHHHHHHHHH-HTTCCEEEEC
T ss_pred ccHHHHHHHHH-HcCCCEEEeC
Confidence 222 233322 3569998877
No 485
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=22.25 E-value=2.8e+02 Score=21.54 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=39.6
Q ss_pred ChhhHhhHHhhhcCC-CCCeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh-------c-cCCCEE
Q 031223 8 PISKSLYLDDKKSKN-NKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELK-------R-KNPRGV 72 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~-------~-~~~dgv 72 (163)
....+.-++.++..+ ..+.+++|.-++. |..+-.++.++.|+..+.+... ..+.+++. . .+.+||
T Consensus 18 ~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GI 97 (286)
T 4a5o_A 18 RQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGI 97 (286)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 344555566665443 4467777754432 4445566778899998877642 23434432 1 268999
Q ss_pred Ee
Q 031223 73 LI 74 (163)
Q Consensus 73 vl 74 (163)
++
T Consensus 98 lV 99 (286)
T 4a5o_A 98 LV 99 (286)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 486
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=22.24 E-value=2.4e+02 Score=20.95 Aligned_cols=12 Identities=8% Similarity=-0.003 Sum_probs=7.7
Q ss_pred CCCEEEeCCCCC
Q 031223 68 NPRGVLISPGPG 79 (163)
Q Consensus 68 ~~dgvvl~GG~~ 79 (163)
+.|.+|-.-|..
T Consensus 75 ~iDiLVNNAG~~ 86 (247)
T 3ged_A 75 RIDVLVNNACRG 86 (247)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 578777655543
No 487
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=22.16 E-value=1.7e+02 Score=21.37 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=36.1
Q ss_pred hcCCCCCeEEEEECCCChHH-HHHHHHHHcCCEEEEEeC---CCCCHHHHhc--c--CCCEEEeCCCCCC
Q 031223 19 KSKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRN---DELTVEELKR--K--NPRGVLISPGPGA 80 (163)
Q Consensus 19 ~~~~~~~~Ilvid~~~~~~~-~~~~~l~~~G~~~~v~~~---~~~~~~~~~~--~--~~dgvvl~GG~~~ 80 (163)
+-+...++|+|.-.. +|.+ .+.+.|.+.|+++..+.- |..+.+.+.. . ++|.||-..|...
T Consensus 7 ~~~~~~~~vlVtGat-G~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~ 75 (292)
T 1vl0_A 7 HHHHHHMKILITGAN-GQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTA 75 (292)
T ss_dssp -----CEEEEEESTT-SHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred ccccccceEEEECCC-ChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccCC
Confidence 444455778877754 5655 488888888988776642 2223333321 1 6999998887643
No 488
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=22.14 E-value=1.4e+02 Score=18.14 Aligned_cols=48 Identities=6% Similarity=0.085 Sum_probs=31.2
Q ss_pred ChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEe
Q 031223 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (163)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~ 55 (163)
|.|.-.....++.+..+..+.|+-.......++.++++..|+++....
T Consensus 21 P~Pvl~~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~ 68 (82)
T 3lvj_C 21 PEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKE 68 (82)
T ss_dssp THHHHHHHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 344444555567776666555553334567788899999998876654
No 489
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=22.09 E-value=2.1e+02 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=28.0
Q ss_pred CCCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 22 NNKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 22 ~~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
-.+.+|+|+ |...|-.-.+.+.|.+.|+++.++++.
T Consensus 331 l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~ 375 (444)
T 3vtf_A 331 LRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPM 375 (444)
T ss_dssp CTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCC
Confidence 355789999 445555556889999999999999875
No 490
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=22.08 E-value=2.2e+02 Score=21.13 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=20.1
Q ss_pred cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223 67 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (163)
Q Consensus 67 ~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~ 105 (163)
.++|+|++.=...+. ...+.+++. -++|++||.-
T Consensus 61 ~g~d~iviaCnTa~~----~~~~~lr~~-~~iPvigi~e 94 (254)
T 1b73_A 61 KGVDIIVVACNTASA----YALERLKKE-INVPVFGVIE 94 (254)
T ss_dssp TTCSEEEECCHHHHT----TSHHHHHHH-SSSCEEESHH
T ss_pred CCCCEEEEeCchhhH----HHHHHHHHh-CCCCEEeeeH
Confidence 479999994432111 124455553 2499999864
No 491
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.06 E-value=2.5e+02 Score=21.02 Aligned_cols=82 Identities=13% Similarity=0.261 Sum_probs=43.2
Q ss_pred hcCCCCCeEEEE-ECCCChHHHHHHHHHH-cCCEEEE---EeCCCCC----HHHHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223 19 KSKNNKNPIIVI-DNYDSFTYNLCQYMGE-LGYHFEV---YRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (163)
Q Consensus 19 ~~~~~~~~Ilvi-d~~~~~~~~~~~~l~~-~G~~~~v---~~~~~~~----~~~~~~~~~dgvvl~GG~~~~~d~~~~~~ 89 (163)
.......+++++ ++.+.|...+.+.+++ .|.++.. ++....+ +..+...++|.|++.+.+ .+...+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~---~~~~~~~~ 214 (353)
T 4gnr_A 138 SEKLNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYY---NEAGKIVN 214 (353)
T ss_dssp HHTSCCSEEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCH---HHHHHHHH
T ss_pred HHhcCCcEEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCc---HHHHHHHH
Confidence 333444444444 5544476677776654 6776542 2332222 233445689999885542 12222344
Q ss_pred HHHHhCCCCCEEEE
Q 031223 90 TVLELGPTVPLFGV 103 (163)
Q Consensus 90 ~i~~~~~~~PvLGI 103 (163)
.+++..-+.|+++.
T Consensus 215 ~~~~~g~~~~~~~~ 228 (353)
T 4gnr_A 215 QARGMGIDKPIVGG 228 (353)
T ss_dssp HHHHTTCCSCEEEC
T ss_pred HHHHcCCCCcEEEe
Confidence 44444556788764
No 492
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=21.99 E-value=1e+02 Score=22.48 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=24.5
Q ss_pred eEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCC
Q 031223 26 PIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 26 ~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
||+|+..... ....+.++++++|+++.++.++
T Consensus 1 mI~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~ 33 (280)
T 1uc8_A 1 MLAILYDRIRPDERMLFERAEALGLPYKKVYVP 33 (280)
T ss_dssp CEEEEESSCCHHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CEEEEecCCCHHHHHHHHHHHHcCCcEEEEehh
Confidence 4888876544 3456899999999999888754
No 493
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=21.84 E-value=2.2e+02 Score=20.22 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeC
Q 031223 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (163)
Q Consensus 24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~ 75 (163)
.++|.||-.+ ..-..+...|.+.|.++.++..+. + ...+.|.||++
T Consensus 19 ~~~I~iiG~G-~mG~~la~~l~~~g~~V~~~~~~~---~--~~~~aD~vi~a 64 (209)
T 2raf_A 19 GMEITIFGKG-NMGQAIGHNFEIAGHEVTYYGSKD---Q--ATTLGEIVIMA 64 (209)
T ss_dssp -CEEEEECCS-HHHHHHHHHHHHTTCEEEEECTTC---C--CSSCCSEEEEC
T ss_pred CCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCH---H--HhccCCEEEEc
Confidence 3679999853 456678888988999887775331 1 12367888874
No 494
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=21.84 E-value=3e+02 Score=21.84 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=50.2
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHH--HHHHHHHcCCEEEEEeCCCCCHHH-HhccCCCEEEeCCCCCCCCC-------
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQD------- 83 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~--~~~~l~~~G~~~~v~~~~~~~~~~-~~~~~~dgvvl~GG~~~~~d------- 83 (163)
++..-+..+...+|.+.+....+.+. ....|.+.|++++++... ...- +...++|.||+ |- +....
T Consensus 172 ~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Ds--a~~~~M~~~~Vd~Viv-GA-d~V~aNG~v~NK 247 (347)
T 1t9k_A 172 VIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDN--MAGWLMKRGLIDAVVV-GA-DRIALNGDTANK 247 (347)
T ss_dssp HHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGG--GHHHHHHTTCCSEEEE-CC-SEEETTSCEEEE
T ss_pred HHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehh--HHHHHhhcCCCCEEEE-Cc-cEEecCCCEEec
Confidence 44444555666778777766655553 578899999999988632 2222 23235888888 43 32211
Q ss_pred ChhH-HHHHHHhCCCCCEEEEe
Q 031223 84 SGIS-LQTVLELGPTVPLFGVC 104 (163)
Q Consensus 84 ~~~~-~~~i~~~~~~~PvLGIC 104 (163)
.+.. ...+.+ ..++|++-.|
T Consensus 248 iGT~~lAl~Ak-~~~vPfyV~a 268 (347)
T 1t9k_A 248 IGTYSLAVLAK-RNNIPFYVAA 268 (347)
T ss_dssp TTHHHHHHHHH-HTTCCEEEEC
T ss_pred ccHHHHHHHHH-HcCCCEEEec
Confidence 1222 222222 3569998877
No 495
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=21.43 E-value=2.5e+02 Score=20.65 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=33.0
Q ss_pred ccCCChhhHhhHHhhhcCCCCCe-EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC----HHHHhccCCCEEEeCC
Q 031223 4 AEAVPISKSLYLDDKKSKNNKNP-IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT----VEELKRKNPRGVLISP 76 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~----~~~~~~~~~dgvvl~G 76 (163)
++.+-+....+++.++....... ++||-+...-. -.++.++.|+++..++..... .+.+...++|.+|+.|
T Consensus 15 ~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~--~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 15 ISGRGSNLEALAKAFSTEESSVVISCVISNNAEAR--GLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAG 90 (215)
T ss_dssp ESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCT--HHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESS
T ss_pred EECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchH--HHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeC
Confidence 45566666666666655433222 34444321111 124455567766555432111 1223334677666644
No 496
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=21.41 E-value=1.5e+02 Score=23.87 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
++.+|+|+..+ ..-..+.+.++++|+++.++.++
T Consensus 34 ~~~~IlIlG~G-~lg~~~~~aa~~lG~~v~v~d~~ 67 (419)
T 4e4t_A 34 PGAWLGMVGGG-QLGRMFCFAAQSMGYRVAVLDPD 67 (419)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCC
Confidence 45689999743 45567889999999999888654
No 497
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=21.37 E-value=2.2e+02 Score=23.24 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.6
Q ss_pred CCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEeCC
Q 031223 23 NKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYRND 57 (163)
Q Consensus 23 ~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~~~ 57 (163)
.+.+|+|+ |..+|-.-.+.+.|.+.|+++.++++.
T Consensus 317 ~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~ 360 (450)
T 3gg2_A 317 QGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPV 360 (450)
T ss_dssp TTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCC
Confidence 45789999 444555556899999999999999875
No 498
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=21.35 E-value=64 Score=23.27 Aligned_cols=33 Identities=0% Similarity=0.166 Sum_probs=20.1
Q ss_pred CCCCCeEEEEECCCChHH-HHHHHHHHcC-CEEEEE
Q 031223 21 KNNKNPIIVIDNYDSFTY-NLCQYMGELG-YHFEVY 54 (163)
Q Consensus 21 ~~~~~~Ilvid~~~~~~~-~~~~~l~~~G-~~~~v~ 54 (163)
+++.++|+|.-. .++.+ .+.+.|.+.| +.+.++
T Consensus 20 ~~~mk~vlVtGa-tG~iG~~l~~~L~~~G~~~V~~~ 54 (236)
T 3qvo_A 20 QGHMKNVLILGA-GGQIARHVINQLADKQTIKQTLF 54 (236)
T ss_dssp --CCEEEEEETT-TSHHHHHHHHHHTTCTTEEEEEE
T ss_pred cCcccEEEEEeC-CcHHHHHHHHHHHhCCCceEEEE
Confidence 333345666654 34544 5888898888 677665
No 499
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=21.33 E-value=3e+02 Score=21.52 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=41.2
Q ss_pred hHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHH--HHhccCCCEEEeCCC
Q 031223 14 YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVE--ELKRKNPRGVLISPG 77 (163)
Q Consensus 14 ~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~--~~~~~~~dgvvl~GG 77 (163)
++++....-.+.+++||-.+...-..+...|...|+++.+.+....+++ +.. .+.|-||..=|
T Consensus 155 lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~-~~ADIVI~Avg 219 (300)
T 4a26_A 155 LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYL-RTADIVIAAMG 219 (300)
T ss_dssp HHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHH-HTCSEEEECSC
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhh-ccCCEEEECCC
Confidence 4444444556788999976544566788888889999988864323344 332 37897776444
No 500
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=21.22 E-value=1.3e+02 Score=20.48 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=33.3
Q ss_pred CeEEEEECCCChH-HHHHHHHHHcCCEEEEEeCC------------------CCCHHHHhc--cCCCEEEeCCCCCC
Q 031223 25 NPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRND------------------ELTVEELKR--KNPRGVLISPGPGA 80 (163)
Q Consensus 25 ~~Ilvid~~~~~~-~~~~~~l~~~G~~~~v~~~~------------------~~~~~~~~~--~~~dgvvl~GG~~~ 80 (163)
++|+|.-.. ++. ..+.+.|.+.|.++..+.-+ ..+.+.+.. .++|.||..-|...
T Consensus 4 ~~ilVtGat-G~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~ 79 (206)
T 1hdo_A 4 KKIAIFGAT-GQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN 79 (206)
T ss_dssp CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCC
Confidence 678887653 454 45888888888887765321 112222321 36899998777544
Done!