Query 031225
Match_columns 163
No_of_seqs 159 out of 454
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_Z 60S ribosomal protein L 100.0 7.3E-66 2.5E-70 411.8 -2.6 161 1-163 1-162 (162)
2 2zkr_u 60S ribosomal protein L 100.0 6.7E-63 2.3E-67 393.3 2.8 156 3-159 1-156 (157)
3 4a17_T RPL24, 60S ribosomal pr 100.0 3.3E-61 1.1E-65 383.7 4.7 133 1-134 1-133 (158)
4 3izc_Z 60S ribosomal protein R 100.0 1E-57 3.4E-62 362.9 -3.8 130 3-133 1-130 (155)
5 1vq8_U 50S ribosomal protein L 100.0 2.7E-39 9.3E-44 225.7 2.8 65 3-67 1-65 (66)
6 3j21_V 50S ribosomal protein L 100.0 7.3E-36 2.5E-40 208.4 5.5 61 2-62 1-61 (66)
7 3jyw_S 60S ribosomal protein L 100.0 4.4E-30 1.5E-34 167.4 2.7 45 10-54 1-45 (45)
8 2hpu_A NOSL protein; alpha bet 94.7 0.017 5.9E-07 45.8 3.0 42 4-45 17-61 (175)
9 1mty_D Methane monooxygenase h 92.2 0.098 3.3E-06 47.9 3.8 58 6-69 402-468 (512)
10 3u52_A Phenol hydroxylase comp 86.8 0.35 1.2E-05 44.1 3.0 52 7-60 398-458 (511)
11 2l8e_A Polyhomeotic-like prote 85.2 0.18 6.3E-06 32.6 0.2 30 6-42 19-48 (49)
12 3ge3_A Toluene-4-monooxygenase 82.5 0.88 3E-05 41.5 3.5 43 7-51 396-444 (500)
13 1zfo_A LAsp-1; LIM domain, zin 79.3 0.48 1.6E-05 27.2 0.4 25 5-32 3-27 (31)
14 1ovx_A ATP-dependent CLP prote 77.1 0.79 2.7E-05 31.5 1.1 24 3-28 16-39 (67)
15 2inc_A Toluene, O-xylene monoo 70.0 2 7E-05 38.8 2.3 54 7-62 395-456 (491)
16 2ds5_A CLPX, ATP-dependent CLP 67.7 1.9 6.7E-05 27.9 1.2 22 5-28 11-32 (51)
17 1a7i_A QCRP2 (LIM1); LIM domai 64.0 4.9 0.00017 26.4 2.7 33 5-40 7-42 (81)
18 1x68_A FHL5 protein; four-and- 58.6 6.7 0.00023 25.4 2.6 34 5-39 5-42 (76)
19 2cu8_A Cysteine-rich protein 2 57.6 8.3 0.00028 24.9 2.9 32 5-39 9-43 (76)
20 2iyb_E Testin, TESS, TES; LIM 57.5 2.7 9.4E-05 26.7 0.5 34 6-41 3-41 (65)
21 2egq_A FHL1 protein; LIM domai 56.4 8.4 0.00029 24.8 2.8 28 5-32 15-43 (77)
22 2ww6_A Fibritin, T4 fibritin; 55.6 5.5 0.00019 22.9 1.5 15 16-30 6-20 (27)
23 1wyh_A SLIM 2, skeletal muscle 54.9 8.3 0.00028 24.4 2.5 34 5-40 5-41 (72)
24 2das_A Zinc finger MYM-type pr 53.8 11 0.00039 25.5 3.1 38 7-46 22-59 (62)
25 3f6q_B LIM and senescent cell 53.0 10 0.00035 23.7 2.7 26 5-32 11-36 (72)
26 1x63_A Skeletal muscle LIM-pro 52.5 9.9 0.00034 24.7 2.7 26 5-32 15-40 (82)
27 2d8y_A Eplin protein; LIM doma 49.2 12 0.00041 25.1 2.7 34 5-41 15-51 (91)
28 2dj7_A Actin-binding LIM prote 47.3 9.2 0.00032 25.4 1.9 25 4-31 14-38 (80)
29 1x4k_A Skeletal muscle LIM-pro 47.3 13 0.00046 23.4 2.6 26 5-32 5-30 (72)
30 1x64_A Alpha-actinin-2 associa 45.0 9.8 0.00034 25.4 1.7 25 4-32 24-48 (89)
31 1iml_A CRIP, cysteine rich int 43.8 11 0.00038 24.2 1.8 23 7-32 2-24 (76)
32 1x4l_A Skeletal muscle LIM-pro 42.4 12 0.00041 23.8 1.8 28 5-32 5-32 (72)
33 2ntk_A IMP cyclohydrolase; alp 42.2 6.9 0.00024 32.4 0.7 29 12-40 18-48 (222)
34 1x61_A Thyroid receptor intera 42.2 13 0.00043 23.6 1.9 25 5-31 5-29 (72)
35 1x62_A C-terminal LIM domain p 41.0 13 0.00043 24.3 1.7 25 4-32 14-38 (79)
36 1nyp_A Pinch protein; LIM doma 39.2 13 0.00044 23.2 1.5 24 5-32 5-28 (66)
37 3pn9_A Proline dipeptidase; st 38.6 17 0.00058 25.4 2.2 33 6-38 29-63 (138)
38 3o5v_A X-Pro dipeptidase; crea 38.5 18 0.0006 25.4 2.3 34 6-39 27-62 (132)
39 2cuq_A Four and A half LIM dom 38.1 16 0.00054 23.6 1.9 24 5-32 15-38 (80)
40 2cup_A Skeletal muscle LIM-pro 37.6 23 0.00079 23.7 2.7 25 6-32 67-91 (101)
41 2co8_A NEDD9 interacting prote 35.8 16 0.00056 24.1 1.7 25 5-32 15-39 (82)
42 3ooo_A Proline dipeptidase; st 35.7 22 0.00075 24.8 2.4 34 6-39 27-62 (132)
43 1wig_A KIAA1808 protein; LIM d 35.5 13 0.00045 24.0 1.1 11 6-16 6-16 (73)
44 3tgv_A Heme-binding protein HU 35.1 14 0.00046 27.2 1.3 31 19-49 31-61 (148)
45 2d8x_A Protein pinch; LIM doma 35.1 17 0.00058 22.9 1.6 24 5-32 5-28 (70)
46 1l8d_A DNA double-strand break 35.0 7.4 0.00025 27.4 -0.2 12 6-17 48-59 (112)
47 1avy_A Fibritin, gpwac M; bact 33.0 19 0.00065 25.1 1.6 17 14-30 48-64 (74)
48 2d8z_A Four and A half LIM dom 33.0 32 0.0011 21.5 2.7 24 5-32 5-28 (70)
49 2dlo_A Thyroid receptor-intera 32.6 20 0.00068 23.3 1.7 32 5-40 15-49 (81)
50 2xzl_A ATP-dependent helicase 31.0 16 0.00054 34.4 1.3 27 8-38 14-40 (802)
51 2l3k_A Rhombotin-2, linker, LI 31.0 9.6 0.00033 27.2 -0.2 25 6-32 9-33 (123)
52 2wjy_A Regulator of nonsense t 30.8 18 0.00061 34.1 1.6 28 7-38 8-35 (800)
53 1gh9_A 8.3 kDa protein (gene M 30.6 11 0.00037 25.8 0.1 23 4-27 20-42 (71)
54 2ehe_A Four and A half LIM dom 30.5 19 0.00063 23.4 1.2 25 6-32 16-40 (82)
55 4f6r_C Stathmin-like domain R1 30.1 69 0.0024 22.8 4.2 33 87-119 41-73 (87)
56 2l4z_A DNA endonuclease RBBP8, 30.0 29 0.00099 25.0 2.3 35 5-42 61-98 (123)
57 1v6g_A Actin binding LIM prote 29.8 23 0.00077 23.0 1.6 30 6-39 16-48 (81)
58 1g47_A Pinch protein; LIM doma 29.0 24 0.00083 22.4 1.6 27 4-32 10-36 (77)
59 2xqn_T Testin, TESS; metal-bin 28.1 32 0.0011 24.1 2.2 24 5-31 3-26 (126)
60 2cur_A Skeletal muscle LIM-pro 27.7 35 0.0012 21.3 2.2 11 6-16 6-16 (69)
61 1vq8_Z 50S ribosomal protein L 27.6 19 0.00067 25.1 1.0 23 6-28 28-52 (83)
62 1j2o_A FLIN2, fusion of rhombo 27.6 37 0.0012 23.7 2.4 33 5-40 3-38 (114)
63 3mcb_B Transcription factor BT 27.3 23 0.0008 23.3 1.3 17 22-38 11-27 (58)
64 1nui_A DNA primase/helicase; z 26.5 37 0.0013 26.8 2.5 30 3-40 12-41 (255)
65 1m3v_A FLIN4, fusion of the LI 26.1 21 0.00073 25.2 1.0 25 6-30 70-104 (122)
66 4ayb_P DNA-directed RNA polyme 26.1 21 0.00072 23.0 0.8 12 5-16 23-34 (48)
67 1d0q_A DNA primase; zinc-bindi 25.5 44 0.0015 23.3 2.6 28 6-39 38-65 (103)
68 1x3h_A Leupaxin; paxillin fami 24.9 32 0.0011 22.1 1.6 24 5-32 15-38 (80)
69 3lkx_A Transcription factor BT 24.8 27 0.00093 23.6 1.3 17 22-38 11-27 (66)
70 3i7m_A XAA-Pro dipeptidase; st 24.3 45 0.0015 23.4 2.4 34 6-39 28-63 (140)
71 2xjy_A Rhombotin-2; oncoprotei 23.6 44 0.0015 23.4 2.2 24 7-32 68-91 (131)
72 3ga8_A HTH-type transcriptiona 22.9 33 0.0011 22.8 1.4 28 6-33 3-31 (78)
73 1lv3_A Hypothetical protein YA 21.6 32 0.0011 23.5 1.1 31 4-41 8-38 (68)
74 1b8t_A Protein (CRP1); LIM dom 20.8 34 0.0012 25.9 1.3 26 4-32 6-31 (192)
75 2rgt_A Fusion of LIM/homeobox 20.2 42 0.0015 24.9 1.6 27 3-32 4-30 (169)
No 1
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=100.00 E-value=7.3e-66 Score=411.78 Aligned_cols=161 Identities=88% Similarity=1.312 Sum_probs=74.5
Q ss_pred CceeeccccccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhhHHHHHhhchhhhHHHHHHHhhcCCCc
Q 031225 1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKP 80 (163)
Q Consensus 1 mvmk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT~~yRr~~kK~~~~e~~kkrrr~~~~k 80 (163)
|||++++|+|||++||||||+|||+|||+||+||||||++||++++|||+|.||++||+.|+||+++|++++++|+++++
T Consensus 1 Mvmk~e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k 80 (162)
T 3iz5_Z 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKP 80 (162)
T ss_dssp CCSSCEECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHHTCCGGGTSSSCSCCCCCCCCCCSSSSSSSCC-----
T ss_pred CceEEEEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcccCcccchhHHHHHHHhccchhhHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhhhccccccCCCC-CCCCCCCCCCCCCC
Q 031225 81 YSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSM-PKGAAPKGPKLGGG 159 (163)
Q Consensus 81 ~~Raivg~Sl~~I~~kr~qkpevr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~~~~~~~~k~~~-~k~~~~~~p~~ggk 159 (163)
|||+|||+||++|+++|||+||+|+|+|||||+++||++++.++.+++++++.++.++++.++.. ++.. ..|.+||.
T Consensus 81 ~qRaivg~sL~~I~~kRnqkpevR~A~Re~air~~Kekkka~~a~kka~~a~~~~~~k~~~~~~~~~~~~--~~~~~~~~ 158 (162)
T 3iz5_Z 81 YSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGA--KGPKIGGG 158 (162)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccCcccC--CCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888776666666555544 4444 78899998
Q ss_pred CCCC
Q 031225 160 GGKR 163 (163)
Q Consensus 160 ~~~~ 163 (163)
||.+
T Consensus 159 ~~~~ 162 (162)
T 3iz5_Z 159 GGKR 162 (162)
T ss_dssp ----
T ss_pred CCCC
Confidence 8865
No 2
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.7e-63 Score=393.33 Aligned_cols=156 Identities=40% Similarity=0.718 Sum_probs=52.9
Q ss_pred eeeccccccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhhHHHHHhhchhhhHHHHHHHhhcCCCccc
Q 031225 3 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYS 82 (163)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT~~yRr~~kK~~~~e~~kkrrr~~~~k~~ 82 (163)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||++|+||+++|..++|++ .+++||
T Consensus 1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~KkR~r-~~vK~~ 79 (157)
T 2zkr_u 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTR-RAVKFQ 79 (157)
T ss_dssp ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHHHHHHHHhc-Ccccee
Confidence 7899999999999999999999999999999999999999999999999999999999999999987666554 555899
Q ss_pred hhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhhhccccccCCCCCCCCCCCCCCCCCC
Q 031225 83 RSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGGG 159 (163)
Q Consensus 83 Raivg~Sl~~I~~kr~qkpevr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~~~~~~~~k~~~~k~~~~~~p~~ggk 159 (163)
|+|||+||++|+++|||+||||.++||+||+++||++++.++.++++.++..+++++++++++++++...+|+|||+
T Consensus 80 R~ivg~sl~~I~~kR~qkpevr~a~r~~ai~~~Ke~kk~~~~~kk~~~~~~~~~~~~~~~~k~~k~~~k~a~~v~g~ 156 (157)
T 2zkr_u 80 RAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156 (157)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhccccccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999887655444445667778888888888999986
No 3
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=100.00 E-value=3.3e-61 Score=383.73 Aligned_cols=133 Identities=35% Similarity=0.565 Sum_probs=60.9
Q ss_pred CceeeccccccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhhHHHHHhhchhhhHHHHHHHhhcCCCc
Q 031225 1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKP 80 (163)
Q Consensus 1 mvmk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT~~yRr~~kK~~~~e~~kkrrr~~~~k 80 (163)
|||++++|+|||++||||||+|||+|||+||+||||||++||++++|||+|.||++||+.|+||+++|++.+|+ +.+++
T Consensus 1 Mvmk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~kkr~-~r~vK 79 (158)
T 4a17_T 1 MVVRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKK-KRNVT 79 (158)
T ss_dssp -CCCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC------------------
T ss_pred CeeEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHHHHHh-cCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999885544 56669
Q ss_pred cchhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhh
Q 031225 81 YSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVT 134 (163)
Q Consensus 81 ~~Raivg~Sl~~I~~kr~qkpevr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~~ 134 (163)
|||+|||+||++|+++|||+||+|+|+||+||+++||++++.++.++++++..+
T Consensus 80 ~~R~ivg~sl~~I~~kR~qkpe~r~a~re~ai~~~Kekkka~~~~kka~~a~~~ 133 (158)
T 4a17_T 80 VARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQG 133 (158)
T ss_dssp ------------------------------------------------------
T ss_pred cchhhhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999988776543
No 4
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=100.00 E-value=1e-57 Score=362.89 Aligned_cols=130 Identities=46% Similarity=0.777 Sum_probs=69.8
Q ss_pred eeeccccccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhhHHHHHhhchhhhHHHHHHHhhcCCCccc
Q 031225 3 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYS 82 (163)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT~~yRr~~kK~~~~e~~kkrrr~~~~k~~ 82 (163)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||+.|+||+++|++ +++++.+++||
T Consensus 1 Mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~-kkR~~~~vK~~ 79 (155)
T 3izc_Z 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVA-KKRSRKTVKAQ 79 (155)
T ss_dssp CCCEECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCSCCCCCCCCCCCSCC-CCCCC------
T ss_pred CceeEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccchhHHHHHHHhCCchhhHHH-HHHhcCCccch
Confidence 78999999999999999999999999999999999999999999999999999999999999999988 45556777999
Q ss_pred hhhhhhcHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhh
Q 031225 83 RSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEV 133 (163)
Q Consensus 83 Raivg~Sl~~I~~kr~qkpevr~a~Re~a~~~~Ker~k~~~~~kk~~~~~~ 133 (163)
|+|||+||++|+++|||+||+|.++|+++|+++||++++.++.++++.+..
T Consensus 80 R~ivg~sl~~Ik~~r~~k~e~r~a~r~~aik~~Kekkka~~~~kk~~~a~~ 130 (155)
T 3izc_Z 80 RPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKS 130 (155)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999988877643
No 5
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=100.00 E-value=2.7e-39 Score=225.75 Aligned_cols=65 Identities=26% Similarity=0.489 Sum_probs=52.9
Q ss_pred eeeccccccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhhHHHHHhhchhhhH
Q 031225 3 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAA 67 (163)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT~~yRr~~kK~~~~ 67 (163)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|+||++||++|+|+++|
T Consensus 1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~ 65 (66)
T 1vq8_U 1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE 65 (66)
T ss_dssp ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence 78999999999999999999999999999999999999999999999999999999999998875
No 6
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.3e-36 Score=208.41 Aligned_cols=61 Identities=31% Similarity=0.788 Sum_probs=58.2
Q ss_pred ceeeccccccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhhHHHHHhhc
Q 031225 2 VLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHK 62 (163)
Q Consensus 2 vmk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT~~yRr~~k 62 (163)
+|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|+||++||+..-
T Consensus 1 M~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~~ 61 (66)
T 3j21_V 1 MARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARL 61 (66)
T ss_dssp CCCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHHH
T ss_pred CCceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHhh
Confidence 3699999999999999999999999999999999999999999999999999999998753
No 7
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.96 E-value=4.4e-30 Score=167.40 Aligned_cols=45 Identities=53% Similarity=1.057 Sum_probs=44.7
Q ss_pred ccCCCccCCCCceEEecCCceeEeechHHHHhhhccCCCccchhh
Q 031225 10 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWT 54 (163)
Q Consensus 10 Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki~WT 54 (163)
|||++||||||+|||++||+||+||||||+++|++++|||+|+||
T Consensus 1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT 45 (45)
T 3jyw_S 1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45 (45)
T ss_dssp CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence 899999999999999999999999999999999999999999998
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=94.74 E-value=0.017 Score=45.84 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeccccccCCCc--cCCC-CceEEecCCceeEeechHHHHhhhcc
Q 031225 4 KTELCRFSGAKI--YPGK-GIRFIRSDSQVFLFANSKCKRYFHNR 45 (163)
Q Consensus 4 k~~~C~Fsg~~I--yPG~-G~~~Vr~Dgkvf~F~ssKc~~~f~~k 45 (163)
....|.|||-.| |||. +.++..+.|++++||+-.|--.|.+.
T Consensus 17 ~~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~ 61 (175)
T 2hpu_A 17 PETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG 61 (175)
T ss_dssp ------------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred CCceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence 457899999998 4676 56666555999999999998776643
No 9
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=92.24 E-value=0.098 Score=47.85 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=44.3
Q ss_pred ccccccCCCc----cCCCCceEE-ecCCceeEeechHHHHhhhccCCCccc----hhhHHHHHhhchhhhHHH
Q 031225 6 ELCRFSGAKI----YPGKGIRFI-RSDSQVFLFANSKCKRYFHNRLKPSKL----TWTSMYRKQHKKDIAAEA 69 (163)
Q Consensus 6 ~~C~Fsg~~I----yPG~G~~~V-r~Dgkvf~F~ssKc~~~f~~krnPRki----~WT~~yRr~~kK~~~~e~ 69 (163)
.+|..|+-++ .||....++ --+|+.|+|||.-|+..|. .||-+. .|+ | .++-++++-.
T Consensus 402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~~~~ 468 (512)
T 1mty_D 402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELSEVI 468 (512)
T ss_dssp EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHHHHH
T ss_pred eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHHHHH
Confidence 3699999984 456666665 6799999999999999998 678776 566 4 7776554443
No 10
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=86.83 E-value=0.35 Score=44.10 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=37.6
Q ss_pred cccccCCCc---cCCCCc----eEEecCCceeEeechHHHHhhhccCCCccc--hhhHHHHHh
Q 031225 7 LCRFSGAKI---YPGKGI----RFIRSDSQVFLFANSKCKRYFHNRLKPSKL--TWTSMYRKQ 60 (163)
Q Consensus 7 ~C~Fsg~~I---yPG~G~----~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki--~WT~~yRr~ 60 (163)
+|..|..+| .||... ..+--+|+.|+|||.-|+..|. .||-+. .|+..-|-+
T Consensus 398 ~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~ 458 (511)
T 3u52_A 398 LCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIY 458 (511)
T ss_dssp BCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHH
T ss_pred ccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHH
Confidence 799999999 456533 3344689999999999999998 567654 455444433
No 11
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=85.24 E-value=0.18 Score=32.61 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=23.7
Q ss_pred ccccccCCCccCCCCceEEecCCceeEeechHHHHhh
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYF 42 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f 42 (163)
..|.+||..|.|..+ ++-=.|||..|...|
T Consensus 19 ~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 19 LKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY 48 (49)
T ss_dssp EECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred CcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence 469999999998663 334469999998876
No 12
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=82.45 E-value=0.88 Score=41.54 Aligned_cols=43 Identities=16% Similarity=0.463 Sum_probs=32.5
Q ss_pred cccccCCCcc--CCCC----ceEEecCCceeEeechHHHHhhhccCCCccc
Q 031225 7 LCRFSGAKIY--PGKG----IRFIRSDSQVFLFANSKCKRYFHNRLKPSKL 51 (163)
Q Consensus 7 ~C~Fsg~~Iy--PG~G----~~~Vr~Dgkvf~F~ssKc~~~f~~krnPRki 51 (163)
+|..|..+|- ||+. ...+--+|+.|+|||.-|+..|. .||-+.
T Consensus 396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y 444 (500)
T 3ge3_A 396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQY 444 (500)
T ss_dssp BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHH
T ss_pred cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHH
Confidence 7999988885 4431 33344589999999999999998 567655
No 13
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=79.34 E-value=0.48 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=18.4
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
.+.|..||..|||.--.+ .+|++|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~H 27 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN---CLDKFWH 27 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC---SSSSCCC
T ss_pred CCcCCccCCEEecceeEE---ECCeEec
Confidence 468999999999984433 3666653
No 14
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=77.09 E-value=0.79 Score=31.53 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=13.3
Q ss_pred eeeccccccCCCccCCCCceEEecCC
Q 031225 3 LKTELCRFSGAKIYPGKGIRFIRSDS 28 (163)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dg 28 (163)
+....|||||.. ..--..+|..+|
T Consensus 16 ~~~~~CSFCGK~--e~eV~~LIaGpg 39 (67)
T 1ovx_A 16 GKLLYCSFCGKS--QHEVRKLIAGPS 39 (67)
T ss_dssp --CCCCTTTCCC--TTTSSSEEECSS
T ss_pred CCCcEecCCCCC--HHHHcccCCCCC
Confidence 345679999984 223344555454
No 15
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=69.98 E-value=2 Score=38.84 Aligned_cols=54 Identities=15% Similarity=0.354 Sum_probs=38.6
Q ss_pred cccccCCCcc--CCCCc---eEE-ecCCceeEeechHHHHhhhccCCCcc--chhhHHHHHhhc
Q 031225 7 LCRFSGAKIY--PGKGI---RFI-RSDSQVFLFANSKCKRYFHNRLKPSK--LTWTSMYRKQHK 62 (163)
Q Consensus 7 ~C~Fsg~~Iy--PG~G~---~~V-r~Dgkvf~F~ssKc~~~f~~krnPRk--i~WT~~yRr~~k 62 (163)
+|..|.-+|- ||.+. .++ --+|+.|+|||.-|+..|. .||-+ -.|+..-|-.++
T Consensus 395 ~c~~cq~P~~~~~~~~~~~~~~~~~~~G~~y~fcs~~c~~~F~--~~Pery~~~~~~~~~~~~g 456 (491)
T 2inc_A 395 ICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQ--IDPERYKNHTNLVDRFLKG 456 (491)
T ss_dssp BCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHH--HSGGGTTTCCCHHHHHHTT
T ss_pred ccCCCCCccCcCCCCccccceeEEEECCEEEeecCHHHHHHHH--HCHHHHhcccchhhHHhcC
Confidence 6888877543 55554 443 6799999999999999998 56765 356655555555
No 16
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=67.72 E-value=1.9 Score=27.88 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=13.0
Q ss_pred eccccccCCCccCCCCceEEecCC
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDS 28 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dg 28 (163)
...|||||.. ...-..+|..+|
T Consensus 11 ~~~CSFCGk~--~~ev~~LIaGpg 32 (51)
T 2ds5_A 11 LLYCSFCGKS--QHEVRKLIAGPS 32 (51)
T ss_dssp CCBCTTTCCB--TTTSSCEEECSS
T ss_pred CcEecCCCCC--HHHhcccCCCCC
Confidence 3579999984 233344555454
No 17
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=63.98 E-value=4.9 Score=26.37 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=23.6
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHHH
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (163)
...|.-|+..|+++. +|.-+|++|+ |.=+.|..
T Consensus 7 ~~~C~~C~~~I~~~~---~~~a~~~~~H~~CF~C~~C~~ 42 (81)
T 1a7i_A 7 GNKCGACGRTVYHAE---EVQCDGRSFHRCCFLCMVCRK 42 (81)
T ss_dssp -CBCSSSCCBCSSTT---EEEETTEEEESSSEECSSSCC
T ss_pred CCcCcCcCccccCce---eEEeCCcccccccCccCCCCC
Confidence 568999999999987 4666788776 44445544
No 18
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.59 E-value=6.7 Score=25.43 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=23.0
Q ss_pred eccccccCCCccC-CCCceEEecCCceeE---eechHHH
Q 031225 5 TELCRFSGAKIYP-GKGIRFIRSDSQVFL---FANSKCK 39 (163)
Q Consensus 5 ~~~C~Fsg~~IyP-G~G~~~Vr~Dgkvf~---F~ssKc~ 39 (163)
...|.-|+.+|++ | ...+|...|+.|+ |.=+.|.
T Consensus 5 ~~~C~~C~~~I~~~g-~~~~~~a~~~~wH~~CF~C~~C~ 42 (76)
T 1x68_A 5 SSGCVACSKPISGLT-GAKFICFQDSQWHSECFNCGKCS 42 (76)
T ss_dssp CCCCTTTCCCCCTTT-TCCEEEETTEEEEGGGCBCTTTC
T ss_pred CCCCccCCCcccCCC-CceeEEECCcccCcccCChhhCC
Confidence 4679999999997 4 3345777777776 4444443
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.62 E-value=8.3 Score=24.90 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=22.6
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHH
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCK 39 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~ 39 (163)
...|.-|+..|+|+. +|.-+|++|+ |.=+.|.
T Consensus 9 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~ 43 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE---KVSSLGKDWHKFCLKCERCS 43 (76)
T ss_dssp CCBCTTTCCBCCTTT---EEEETTEEEETTTCBCSSSC
T ss_pred CCCCcCCCCEeECCe---EEEECCeEeeCCCCCCCCCC
Confidence 567999999999876 4556777776 4434443
No 20
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=57.55 E-value=2.7 Score=26.68 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=23.3
Q ss_pred ccccccCCCccCCCCceEEecCCceeE-----eechHHHHh
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFL-----FANSKCKRY 41 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~-----F~ssKc~~~ 41 (163)
..|..|+.+|+|+- .+|.-.|+.|+ |.=+.|...
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp EECTTTSSEECTTS--CEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCCcCCCCeeccCc--eEEEECCCccCCCCCCEECCCCCCc
Confidence 46888899998852 24566678887 666666543
No 21
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=56.39 E-value=8.4 Score=24.77 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.7
Q ss_pred eccccccCCCccCC-CCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPG-KGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG-~G~~~Vr~Dgkvf~ 32 (163)
...|.-|+.+|+|+ .+..+|...|++|+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H 43 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWH 43 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEE
T ss_pred CccCcccCCcccCCCCCceeEEECcceeC
Confidence 46799999999973 25677777888775
No 22
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=55.61 E-value=5.5 Score=22.93 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.7
Q ss_pred cCCCCceEEecCCce
Q 031225 16 YPGKGIRFIRSDSQV 30 (163)
Q Consensus 16 yPG~G~~~Vr~Dgkv 30 (163)
-|--|..|||.||.-
T Consensus 6 AP~Dg~~Yvr~dg~W 20 (27)
T 2ww6_A 6 APRDAQAYVRKFGEW 20 (27)
T ss_dssp CCSSSCEEEEETTEE
T ss_pred CCcCcceeEEEcCeE
Confidence 477899999999963
No 23
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.91 E-value=8.3 Score=24.41 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=22.7
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHHH
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (163)
...|..|+..|+|+. .+|..+|++|+ |.=+.|..
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF~C~~C~~ 41 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHCFLCSGCEQ 41 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTTCBCTTTCC
T ss_pred CCCCccCCCccccCc--cEEEECccccCcccCeECCCCC
Confidence 467999999999852 45666777776 44444543
No 24
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=53.80 E-value=11 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=33.2
Q ss_pred cccccCCCccCCCCceEEecCCceeEeechHHHHhhhccC
Q 031225 7 LCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRL 46 (163)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~f~~kr 46 (163)
.|+-|-..++- |..=+++.|.+-.|||.-|-..|..+.
T Consensus 22 ~C~~CKk~lqK--GQtAyqrkGs~~LFCS~~CL~~fs~~~ 59 (62)
T 2das_A 22 TCANCKKPLQK--GQTAYQRKGSAHLFCSTTCLSSFSSGP 59 (62)
T ss_dssp BCTTTCCBCCT--TSCCEECTTCCCEESSHHHHHHHCCCS
T ss_pred Chhhccchhhc--CceeeeecCchhheechHHHcccCCCC
Confidence 58888888886 888899999999999999999887654
No 25
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=53.01 E-value=10 Score=23.67 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=19.5
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|+|+. .+|..+|++|+
T Consensus 11 ~~~C~~C~~~i~~~e--~~~~~~~~~~H 36 (72)
T 3f6q_B 11 SATCERCKGGFAPAE--KIVNSNGELYH 36 (72)
T ss_dssp TCBCTTTCCBCCTTC--EEEEETTEEEE
T ss_pred CccchhcCccccCCc--eEEEeCcCeeC
Confidence 457999999999875 34556777775
No 26
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.46 E-value=9.9 Score=24.73 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=19.4
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|+|+. ++|..+|++|+
T Consensus 15 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 40 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD--QNVEYKGTVWH 40 (82)
T ss_dssp SCBCSSSCCBCCSSS--CEEECSSCEEE
T ss_pred CCcCccCCcccccCc--eEEEECccccc
Confidence 467999999999863 45666777765
No 27
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.20 E-value=12 Score=25.07 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=25.1
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHHHh
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKRY 41 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~~ 41 (163)
...|..|+..|+++. +|..+|++|+ |.=+.|...
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 15 RETCVECQKTVYPME---RLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SCBCTTTCCBCCTTS---EEECSSSEEETTTCBCTTTCCB
T ss_pred CCcCccCCCccCCce---eEEECCCEECCCCCeeCCCCCC
Confidence 468999999999875 4677888886 555566543
No 28
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.33 E-value=9.2 Score=25.37 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=17.6
Q ss_pred eeccccccCCCccCCCCceEEecCCcee
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSDSQVF 31 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf 31 (163)
....|.-|+..|++|. +|...|+.|
T Consensus 14 ~~~~C~~C~~~I~~~~---~v~a~~~~w 38 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ---SLLALDKQW 38 (80)
T ss_dssp SCSCCTTTCCCCSSSC---CEEETTEEE
T ss_pred CCCCCcCcCCeeCCCe---EEEECCccc
Confidence 3567999999999875 344556655
No 29
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.29 E-value=13 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=17.2
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|+|+. .+|..+|++|+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 30 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT--RKMEYKGSSWH 30 (72)
T ss_dssp CCCBSSSCCCCCSSS--CEEEETTEEEE
T ss_pred CCCCccCCCcccCCc--eEEEECcCeec
Confidence 457999999999853 23444566555
No 30
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.00 E-value=9.8 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=18.3
Q ss_pred eeccccccCCCccCCCCceEEecCCceeE
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
....|.-|+..|++ .+|..+|++|+
T Consensus 24 ~~~~C~~C~~~I~~----~~~~a~~~~~H 48 (89)
T 1x64_A 24 RMPLCDKCGSGIVG----AVVKARDKYRH 48 (89)
T ss_dssp SCCBCTTTCCBCCS----CCEESSSCEEC
T ss_pred cCCCcccCCCEecc----cEEEECCceEC
Confidence 34678999999984 56777777765
No 31
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.78 E-value=11 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=15.0
Q ss_pred cccccCCCccCCCCceEEecCCceeE
Q 031225 7 LCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
.|.-|+..|++|. +|...|++|+
T Consensus 2 ~C~~C~~~I~~~~---~v~a~~~~~H 24 (76)
T 1iml_A 2 KCPKCDKEVYFAE---RVTSLGKDWH 24 (76)
T ss_dssp BCTTTSSBCCGGG---EEEETTEEEE
T ss_pred cCCCCCCEEECce---EEEECCcccc
Confidence 4777888888764 3455566665
No 32
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.40 E-value=12 Score=23.78 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=16.9
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|.-|+.+|++.-...+|...|+.|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH 32 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWH 32 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEEC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccC
Confidence 4568888888886223344555556554
No 33
>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A
Probab=42.24 E-value=6.9 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCCccCCCCceEEec-CCc-eeEeechHHHH
Q 031225 12 GAKIYPGKGIRFIRS-DSQ-VFLFANSKCKR 40 (163)
Q Consensus 12 g~~IyPG~G~~~Vr~-Dgk-vf~F~ssKc~~ 40 (163)
+...|||+|++.=+. ||+ |.+|+++..+.
T Consensus 18 ~~n~YpGRgIvvG~t~~G~~vaY~I~sRSfp 48 (222)
T 2ntk_A 18 GSHMYLGRILAVGRNSNGSFVAYRVSSRSFP 48 (222)
T ss_dssp TTCCCCCSEEEEEEETTEEEEEEEEECSSCC
T ss_pred hcCCCCCCeEEEeeCCCCCEEEEEEecCCCC
Confidence 457899999999999 998 66888887654
No 34
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.18 E-value=13 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=14.7
Q ss_pred eccccccCCCccCCCCceEEecCCcee
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVF 31 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf 31 (163)
...|..|+.+|+|. ..+|..+|++|
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~ 29 (72)
T 1x61_A 5 SSGCGGCGEDVVGD--GAGVVALDRVF 29 (72)
T ss_dssp CCCCSSSCSCCCSS--SCCEECSSSEE
T ss_pred CCCCccCCCccCCC--ceEEEECCCeE
Confidence 45688888888873 12344444444
No 35
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.05 E-value=13 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=19.7
Q ss_pred eeccccccCCCccCCCCceEEecCCceeE
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
....|.-|+..|++ .+|.-.|++|+
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H 38 (79)
T 1x62_A 14 KLPMCDKCGTGIVG----VFVKLRDRHRH 38 (79)
T ss_dssp CCCCCSSSCCCCCS----SCEECSSCEEC
T ss_pred CCCccccCCCCccC----cEEEECcceeC
Confidence 46789999999994 26777888776
No 36
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=39.17 E-value=13 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=16.6
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|+ |. +|...|++|+
T Consensus 5 ~~~C~~C~~~I~-~~---~~~a~~~~~H 28 (66)
T 1nyp_A 5 VPICGACRRPIE-GR---VVNAMGKQWH 28 (66)
T ss_dssp CCEETTTTEECC-SC---EECCTTSBEE
T ss_pred CCCCcccCCEec-ce---EEEECccccc
Confidence 467888888888 32 5666777664
No 37
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=38.60 E-value=17 Score=25.35 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=24.6
Q ss_pred ccccccCCCccCCC--CceEEecCCceeEeechHH
Q 031225 6 ELCRFSGAKIYPGK--GIRFIRSDSQVFLFANSKC 38 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~--G~~~Vr~Dgkvf~F~ssKc 38 (163)
.+++|||+.-.+|. +.++|..||..+.|+.+.-
T Consensus 29 ni~yltGf~g~~~er~~~lli~~~g~~~l~~d~~~ 63 (138)
T 3pn9_A 29 TINYLTGFYSDPHERQMFLFVLADQEPLLFVPALE 63 (138)
T ss_dssp HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGG
T ss_pred ceeeecCCCCCCccceEEEEEeCCCCEEEEEeccc
Confidence 45678887755543 5788999999999998754
No 38
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=38.47 E-value=18 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=26.4
Q ss_pred ccccccCCCccCC--CCceEEecCCceeEeechHHH
Q 031225 6 ELCRFSGAKIYPG--KGIRFIRSDSQVFLFANSKCK 39 (163)
Q Consensus 6 ~~C~Fsg~~IyPG--~G~~~Vr~Dgkvf~F~ssKc~ 39 (163)
.+.+|||+...|| .+.++|..||..+.|+.+--.
T Consensus 27 ni~YltGf~~~~~er~~~l~v~~~g~~~l~~~~~y~ 62 (132)
T 3o5v_A 27 TINYLTGFFCDPHERQLFLFVYHDLAPVLFVPALEV 62 (132)
T ss_dssp HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGH
T ss_pred hhhHhhCCCCCCccceEEEEEeCCCCEEEEeehhhh
Confidence 3468888887766 357899999999999987654
No 39
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.11 E-value=16 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=17.2
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|++. +|.-.|+.|+
T Consensus 15 ~~~C~~C~~~I~~~----~v~a~~~~~H 38 (80)
T 2cuq_A 15 APRCARCSKTLTQG----GVTYRDQPWH 38 (80)
T ss_dssp SCCCTTTCCCCCSC----CEESSSSEEC
T ss_pred CCcCCCCCCEecCc----EEEECCchhh
Confidence 35788888888863 5667777665
No 40
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.64 E-value=23 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=18.5
Q ss_pred ccccccCCCccCCCCceEEecCCceeE
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
..|..|+..|.||. .+|...|.+|+
T Consensus 67 ~~C~~C~~~I~~~~--~~~~a~~~~~H 91 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVEYKGTVWH 91 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEESSSCEEE
T ss_pred CccccCCCccccCC--eEEEeCCcchH
Confidence 57999999999863 45666677665
No 41
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.81 E-value=16 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=18.7
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|.-|+..||++.-. .-+|++|+
T Consensus 15 ~~~C~~C~~~I~~~e~v---~a~~~~wH 39 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL---CVNGHFFH 39 (82)
T ss_dssp SCBCSSSCCBCCTTTBC---CBTTBCCB
T ss_pred CCCCcccCCCcccceEE---EECCCeeC
Confidence 46799999999987643 35677765
No 42
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=35.73 E-value=22 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.0
Q ss_pred ccccccCCCccCC--CCceEEecCCceeEeechHHH
Q 031225 6 ELCRFSGAKIYPG--KGIRFIRSDSQVFLFANSKCK 39 (163)
Q Consensus 6 ~~C~Fsg~~IyPG--~G~~~Vr~Dgkvf~F~ssKc~ 39 (163)
.+.+|||+.-.|| .+.++|..||..+.|+.+--.
T Consensus 27 ni~YlTGf~~~~~er~~~l~v~~~g~~~l~~~~~y~ 62 (132)
T 3ooo_A 27 TVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEV 62 (132)
T ss_dssp HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGH
T ss_pred hHHHHhCCCCCCCcceEEEEEeCCCCEEEEEeccch
Confidence 3468899887665 347889999999999987643
No 43
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.47 E-value=13 Score=24.01 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=6.4
Q ss_pred ccccccCCCcc
Q 031225 6 ELCRFSGAKIY 16 (163)
Q Consensus 6 ~~C~Fsg~~Iy 16 (163)
..|.-|+..|+
T Consensus 6 ~~C~~C~~~I~ 16 (73)
T 1wig_A 6 SGCDSCEKYIT 16 (73)
T ss_dssp CSCSSSCCCCS
T ss_pred CCcccCCCEec
Confidence 34666666665
No 44
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=35.13 E-value=14 Score=27.19 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCceEEecCCceeEeechHHHHhhhccCCCc
Q 031225 19 KGIRFIRSDSQVFLFANSKCKRYFHNRLKPS 49 (163)
Q Consensus 19 ~G~~~Vr~Dgkvf~F~ssKc~~~f~~krnPR 49 (163)
.=.-||..||.++.++|....+.-.+.+|||
T Consensus 31 s~v~~~~~~~~~~~~~s~~~~~~~nl~~~pr 61 (148)
T 3tgv_A 31 SYAPFVQNQEGYFVLISHIARHARNLEVNPQ 61 (148)
T ss_dssp EEEEEEEETTEEEEEEETTSHHHHHHHHSCE
T ss_pred EEEEEEEECCEEEEEECCccHHHHHHHhCCC
Confidence 3456888899888888888888888999996
No 45
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.09 E-value=17 Score=22.88 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=16.6
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|+ | .+|..+|+.|+
T Consensus 5 ~~~C~~C~~~I~-~---~~~~a~~~~~H 28 (70)
T 2d8x_A 5 SSGCHQCGEFII-G---RVIKAMNNSWH 28 (70)
T ss_dssp SSBCSSSCCBCC-S---CCEEETTEEEC
T ss_pred CCcCccCCCEec-c---eEEEECccccc
Confidence 456888888887 2 35666777665
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.04 E-value=7.4 Score=27.37 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=10.5
Q ss_pred ccccccCCCccC
Q 031225 6 ELCRFSGAKIYP 17 (163)
Q Consensus 6 ~~C~Fsg~~IyP 17 (163)
+.|.+||.+|.|
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 579999999986
No 47
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=33.04 E-value=19 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.9
Q ss_pred CccCCCCceEEecCCce
Q 031225 14 KIYPGKGIRFIRSDSQV 30 (163)
Q Consensus 14 ~IyPG~G~~~Vr~Dgkv 30 (163)
+.-|--|..|||.||--
T Consensus 48 p~AP~DG~~YVrkDgaW 64 (74)
T 1avy_A 48 PEAPRDGQAYVRKDGEW 64 (74)
T ss_dssp CCCCCSSCCEEEETTEE
T ss_pred CCCCCCCceeEEecCee
Confidence 35688899999999963
No 48
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.96 E-value=32 Score=21.48 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=17.2
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|..|+..|++. +|...|++|+
T Consensus 5 ~~~C~~C~~~I~~~----~~~a~~~~~H 28 (70)
T 2d8z_A 5 SSGCVQCKKPITTG----GVTYREQPWH 28 (70)
T ss_dssp CCBCSSSCCBCCSS----EEESSSSEEE
T ss_pred CCCCcccCCeeccc----eEEECccccC
Confidence 45788899988842 3666777776
No 49
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.60 E-value=20 Score=23.28 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=21.1
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHHH
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (163)
...|..|+.+|+ | ++|...|++|+ |.=+.|..
T Consensus 15 ~~~C~~C~~~I~-~---~~~~a~~~~~H~~CF~C~~C~~ 49 (81)
T 2dlo_A 15 LEKCATCSQPIL-D---RILRAMGKAYHPGCFTCVVCHR 49 (81)
T ss_dssp CCBCTTTCCBCC-S---CCEEETTEEECTTTCBCSSSCC
T ss_pred CCccccCCCeec-c---eeEEECCccccHHhcCcccCCC
Confidence 457888999998 2 36777777776 44344543
No 50
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=31.04 E-value=16 Score=34.45 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=0.0
Q ss_pred ccccCCCccCCCCceEEecCCceeEeechHH
Q 031225 8 CRFSGAKIYPGKGIRFIRSDSQVFLFANSKC 38 (163)
Q Consensus 8 C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc 38 (163)
|.|||..-. .-.|+=..--.||||+++
T Consensus 14 c~yc~~~~~----~~~~~c~~~~~wfcn~~~ 40 (802)
T 2xzl_A 14 CAYCGIDSA----KCVIKCNSCKKWFCNTKN 40 (802)
T ss_dssp CTTTCCCCT----TTEEEETTTCCEEECCCS
T ss_pred CcccCCCCC----ceEEEeCCCCcEecCCCC
No 51
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.02 E-value=9.6 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=15.1
Q ss_pred ccccccCCCccCCCCceEEecCCceeE
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
+.|..|+..|+|+- ++|...|++|+
T Consensus 9 ~~C~~C~~~I~~~e--~~~~a~~~~~H 33 (123)
T 2l3k_A 9 GLCASCDKRIRAYE--MTMRVKDKVYH 33 (123)
T ss_dssp CCCSSSSCCCCTTC--CCCCCSSCCCC
T ss_pred CcccCCCCeecCCc--eEEEECCcccc
Confidence 36888888888742 23344455554
No 52
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=30.80 E-value=18 Score=34.13 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=15.0
Q ss_pred cccccCCCccCCCCceEEecCCceeEeechHH
Q 031225 7 LCRFSGAKIYPGKGIRFIRSDSQVFLFANSKC 38 (163)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc 38 (163)
-|.|||..-. .-.|+=..--.||||+++
T Consensus 8 ~c~~c~~~~~----~~~~~~~~~~~~fcn~~~ 35 (800)
T 2wjy_A 8 ACSYCGIHDP----ACVVYCNTSKKWFCNGRG 35 (800)
T ss_dssp SCTTTCCCCG----GGEEEETTTTEEEESCCT
T ss_pred hccccCCCCC----CeEEEcCCCCCccccCCC
Confidence 4677765432 234444445566666665
No 53
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=30.59 E-value=11 Score=25.81 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=18.9
Q ss_pred eeccccccCCCccCCCCceEEecC
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSD 27 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~D 27 (163)
++..|. ||..|....-+.|+..|
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~~ 42 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRAD 42 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCCS
T ss_pred cEEECC-CCCeeeeceEEEEEecC
Confidence 577897 99999999888888654
No 54
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.52 E-value=19 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=15.7
Q ss_pred ccccccCCCccCCCCceEEecCCceeE
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
..|.-|+..|+|+ ..+|.-.|+.|+
T Consensus 16 ~~C~~C~~~I~~~--~~~~~a~~~~~H 40 (82)
T 2ehe_A 16 NTCAECQQLIGHD--SRELFYEDRHFH 40 (82)
T ss_dssp CBCTTTCCBCCSS--CCBCCCSSCCCB
T ss_pred CcCccCCCccccC--cEEEEeCCcccc
Confidence 4789999999972 233444455543
No 55
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=30.10 E-value=69 Score=22.84 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=19.3
Q ss_pred hhcHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Q 031225 87 GATLEVIQKRRTEKPEVRDAAREAALREIKERI 119 (163)
Q Consensus 87 g~Sl~~I~~kr~qkpevr~a~Re~a~~~~Ker~ 119 (163)
..||++|+.+-..-.|-|+.+-.+-+..+.++.
T Consensus 41 ~~SleeIqkKLeAAeERRks~EA~~L~~Laekr 73 (87)
T 4f6r_C 41 DPSLEEIQKKLEAAEERRKAHFAAMLERLQEKD 73 (87)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999998765444555555444444444443
No 56
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.01 E-value=29 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=24.6
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHHHhh
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKRYF 42 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~~f 42 (163)
...|.-|+..|+. ..+|...|+.|+ |.=+.|...+
T Consensus 61 ~~~C~~C~~~I~~---~~~v~a~~~~wH~~CF~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIAD---RFLLYAMDSYWHSRCLKCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCS---SSEEEETTEEEETTTSBCTTTCCBG
T ss_pred CCcCcCCCCCcCC---cEEEEeCCcEEcccccCcCcCCCcc
Confidence 4689999999994 345777888886 4445665443
No 57
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.76 E-value=23 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=21.0
Q ss_pred ccccccCCCccCCCCceEEecCCceeE---eechHHH
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCK 39 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~ 39 (163)
..|..|+..|+ | .+|...|++|+ |.=..|.
T Consensus 16 ~~C~~C~~~I~-~---~~v~a~~~~wH~~CF~C~~C~ 48 (81)
T 1v6g_A 16 TRCFSCDQFIE-G---EVVSALGKTYHPDCFVCAVCR 48 (81)
T ss_dssp CBCTTTCCBCC-S---CCEEETTEEECTTTSSCSSSC
T ss_pred CcCccccCEec-c---ceEEECCceeCccCCccccCC
Confidence 57999999999 3 46777777776 4444443
No 58
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.03 E-value=24 Score=22.41 Aligned_cols=27 Identities=11% Similarity=0.416 Sum_probs=17.8
Q ss_pred eeccccccCCCccCCCCceEEecCCceeE
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
-...|..|+..|+|+. .+|..+|++|+
T Consensus 10 ~~~~C~~C~~~I~~~~--~~~~a~~~~~H 36 (77)
T 1g47_A 10 ASATCERCKGGFAPAE--KIVNSNGELYH 36 (77)
T ss_dssp CCCBCSSSCCBCCSTT--TCEEETTEEEC
T ss_pred CCCCchhcCCccCCCc--eEEEeCccEec
Confidence 3567999999999753 23444566554
No 59
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.10 E-value=32 Score=24.06 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=14.0
Q ss_pred eccccccCCCccCCCCceEEecCCcee
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVF 31 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf 31 (163)
...|.-|+..|++|. +|.-+|+.+
T Consensus 3 ~~~C~~C~~~I~~~~---~~~a~~~~~ 26 (126)
T 2xqn_T 3 KPRCAGCDELIFSNE---YTQAENQNW 26 (126)
T ss_dssp CCBBTTTSSBCCSSC---EEEETTEEE
T ss_pred CCCCccCCCEeCCce---EEeeCCCCc
Confidence 356777777777653 344444444
No 60
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.72 E-value=35 Score=21.25 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=5.5
Q ss_pred ccccccCCCcc
Q 031225 6 ELCRFSGAKIY 16 (163)
Q Consensus 6 ~~C~Fsg~~Iy 16 (163)
..|..|+..|+
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 34555555554
No 61
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.61 E-value=19 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=14.4
Q ss_pred ccccccCCCcc--CCCCceEEecCC
Q 031225 6 ELCRFSGAKIY--PGKGIRFIRSDS 28 (163)
Q Consensus 6 ~~C~Fsg~~Iy--PG~G~~~Vr~Dg 28 (163)
..|.|||...- |+.|++--..=|
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~Cg 52 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSYCD 52 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTC
T ss_pred CcCCCCCCcceeccCCCeEECCCCC
Confidence 46999987543 666655444433
No 62
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.60 E-value=37 Score=23.68 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=20.2
Q ss_pred eccccccCCCccCCCCceEEecCCceeE---eechHHHH
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL---FANSKCKR 40 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~---F~ssKc~~ 40 (163)
...|.-|+.+|+.+ .+|...|+.|+ |.=+.|..
T Consensus 3 ~~~C~~C~~~I~~~---~~~~a~~~~wH~~CF~C~~C~~ 38 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR---YFLKAIDQYWHEDCLSCDLCGC 38 (114)
T ss_dssp CBCBSSSCSCBCSS---EEEECSSSEECTTTCCCSSSCS
T ss_pred CCCCcCCCCeeCCc---EEEEECchhHHHhcCcccccCC
Confidence 35688888888843 45666677665 33344543
No 63
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=27.25 E-value=23 Score=23.34 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.1
Q ss_pred eEEecCCceeEeechHH
Q 031225 22 RFIRSDSQVFLFANSKC 38 (163)
Q Consensus 22 ~~Vr~Dgkvf~F~ssKc 38 (163)
-+.+.||.|++|-+-|-
T Consensus 11 nmfk~dg~vihF~nPkV 27 (58)
T 3mcb_B 11 NMFTNQGTVIHFNNPKV 27 (58)
T ss_dssp EEEETTSEEEEEESCEE
T ss_pred EEEecCCEEEEecCcce
Confidence 37789999999988764
No 64
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=26.52 E-value=37 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=21.0
Q ss_pred eeeccccccCCCccCCCCceEEecCCceeEeechHHHH
Q 031225 3 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKR 40 (163)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~ 40 (163)
++-..|..||.. ..+++-.|| .+||+ .|..
T Consensus 12 ~~~~~CP~Cg~~-----d~~~~~~dg--~~~C~-~Cg~ 41 (255)
T 1nui_A 12 LYHIPCDNCGSS-----DGNSLFSDG--HTFCY-VCEK 41 (255)
T ss_dssp EEEECCSSSCCS-----SCEEEETTS--CEEET-TTCC
T ss_pred ecCCcCCCCCCC-----CCceEeCCC--Ceecc-cCCC
Confidence 345679999864 235555788 48999 6864
No 65
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.12 E-value=21 Score=25.23 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=18.6
Q ss_pred ccccccCCCccCC----------CCceEEecCCce
Q 031225 6 ELCRFSGAKIYPG----------KGIRFIRSDSQV 30 (163)
Q Consensus 6 ~~C~Fsg~~IyPG----------~G~~~Vr~Dgkv 30 (163)
+.|+-|+..|.++ .|..|+-.||++
T Consensus 70 ~~C~~C~~~I~~~~~~~~g~~~l~g~~f~~~~~~~ 104 (122)
T 1m3v_A 70 GAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERL 104 (122)
T ss_dssp CSSSCSSCCSCCEESSSSSSSSCCSCTTCCTTCCC
T ss_pred CccccCCCCcCchheEEcCCcCCCCCccEecCCEe
Confidence 3799999999963 466677777764
No 66
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=26.10 E-value=21 Score=23.03 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=9.2
Q ss_pred eccccccCCCcc
Q 031225 5 TELCRFSGAKIY 16 (163)
Q Consensus 5 ~~~C~Fsg~~Iy 16 (163)
.-.|.||||.|-
T Consensus 23 ~IrCpyCGyrii 34 (48)
T 4ayb_P 23 GVRCPYCGYKII 34 (48)
T ss_dssp SSCCTTTCCSCE
T ss_pred CcccCccCcEEE
Confidence 446999999873
No 67
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=25.49 E-value=44 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=19.3
Q ss_pred ccccccCCCccCCCCceEEecCCceeEeechHHH
Q 031225 6 ELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCK 39 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~ 39 (163)
..|.||+-+ |..+.|. +++-+|+|.+ |.
T Consensus 38 ~~CPfh~e~----~pSf~V~-~~k~~~~Cf~-cg 65 (103)
T 1d0q_A 38 GLCPFHGEK----TPSFSVS-PEKQIFHCFG-CG 65 (103)
T ss_dssp ECCSSSCCS----SCCEEEE-TTTTEEEETT-TC
T ss_pred EECCCCCCC----CCcEEEE-cCCCEEEECC-CC
Confidence 468888744 4577774 5677899986 64
No 68
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.87 E-value=32 Score=22.09 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=17.1
Q ss_pred eccccccCCCccCCCCceEEecCCceeE
Q 031225 5 TELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 5 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
...|.-|+..|++ .+|...|++|+
T Consensus 15 ~~~C~~C~~~I~~----~~v~a~~~~~H 38 (80)
T 1x3h_A 15 SPKCGGCNRPVLE----NYLSAMDTVWH 38 (80)
T ss_dssp SCBCTTTCCBCCS----SCEEETTEEEC
T ss_pred CCccccCCCeecc----eeEEECCCeEe
Confidence 3578888888885 35666777665
No 69
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=24.81 E-value=27 Score=23.58 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.0
Q ss_pred eEEecCCceeEeechHH
Q 031225 22 RFIRSDSQVFLFANSKC 38 (163)
Q Consensus 22 ~~Vr~Dgkvf~F~ssKc 38 (163)
-+.+.||.|++|-+-|-
T Consensus 11 nmfk~dg~vihF~nPkV 27 (66)
T 3lkx_A 11 NMFTNQGTVIHFNNPKV 27 (66)
T ss_dssp EEEETTSEEEEEESCEE
T ss_pred EEEecCCEEEEecCcce
Confidence 36789999999988764
No 70
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=24.26 E-value=45 Score=23.43 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.8
Q ss_pred ccccccCCCccCCC--CceEEecCCceeEeechHHH
Q 031225 6 ELCRFSGAKIYPGK--GIRFIRSDSQVFLFANSKCK 39 (163)
Q Consensus 6 ~~C~Fsg~~IyPG~--G~~~Vr~Dgkvf~F~ssKc~ 39 (163)
.+.+|||+.-.||. +.++|..||..+.|+.+--.
T Consensus 28 ni~YlTGf~~~~~er~~~llv~~~g~~~l~~~~~~~ 63 (140)
T 3i7m_A 28 TIEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEV 63 (140)
T ss_dssp HHHHHHCCCCCCCSSCCEEEECSSSCCEEEEEGGGH
T ss_pred cceeecCCCCCCccceEEEEEeCCCCEEEEEecccH
Confidence 34688998866652 47888899999999987654
No 71
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.59 E-value=44 Score=23.42 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=16.9
Q ss_pred cccccCCCccCCCCceEEecCCceeE
Q 031225 7 LCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 7 ~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
.|..|+..|+|+- ++|...|.+|+
T Consensus 68 ~C~~C~~~I~~~e--~~~~a~~~~~H 91 (131)
T 2xjy_A 68 LCASCDKRIRAYE--MTMRVKDKVYH 91 (131)
T ss_dssp ECTTTCCEECTTS--EEEEETTEEEE
T ss_pred ChhhcCCccCccc--eeEeeCCceEC
Confidence 6888999998743 45555666665
No 72
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=22.88 E-value=33 Score=22.77 Aligned_cols=28 Identities=7% Similarity=-0.033 Sum_probs=20.9
Q ss_pred ccccccCCC-ccCCCCceEEecCCceeEe
Q 031225 6 ELCRFSGAK-IYPGKGIRFIRSDSQVFLF 33 (163)
Q Consensus 6 ~~C~Fsg~~-IyPG~G~~~Vr~Dgkvf~F 33 (163)
.+|.+||.. +.+|...+-+.-+|..+.+
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I 31 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVL 31 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEE
Confidence 469999865 8888877666667776544
No 73
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=21.63 E-value=32 Score=23.46 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred eeccccccCCCccCCCCceEEecCCceeEeechHHHHh
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRY 41 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~F~ssKc~~~ 41 (163)
.+..|.-||.++.-..- ..-.-|||..|...
T Consensus 8 ~~~~CP~Cgkp~~W~~~-------~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEI-------SPFRPFCSKRCQLI 38 (68)
T ss_dssp CEEECTTTCCEEECSSS-------SSCCSSSSHHHHHH
T ss_pred CcCcCCCCCCccccccc-------CCCCcccCHHHHhh
Confidence 45579999998764432 44557999999764
No 74
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.82 E-value=34 Score=25.93 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=16.5
Q ss_pred eeccccccCCCccCCCCceEEecCCceeE
Q 031225 4 KTELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 4 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
....|..|+..|++|.- |.-+|+.|+
T Consensus 6 ~~~~C~~C~~~I~~~~~---v~a~g~~wH 31 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEE---VQCEGSSFH 31 (192)
T ss_dssp CCEECTTTCCEECSSCC---EEETTEEEC
T ss_pred CCCcCccCCCeecceeE---EEeCCceec
Confidence 34678888888887662 334555554
No 75
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.20 E-value=42 Score=24.87 Aligned_cols=27 Identities=7% Similarity=0.141 Sum_probs=14.8
Q ss_pred eeeccccccCCCccCCCCceEEecCCceeE
Q 031225 3 LKTELCRFSGAKIYPGKGIRFIRSDSQVFL 32 (163)
Q Consensus 3 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkvf~ 32 (163)
+....|..|+..|+.+ .+|..+|+.|+
T Consensus 4 ~~~~~C~~C~~~I~~~---~~~~a~~~~wH 30 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDR---FILKALDRHWH 30 (169)
T ss_dssp ---CBBSSSSSBCCSS---SCEECSSCEEC
T ss_pred CCCCccccCCCccCCc---EEEEECCcEEc
Confidence 4466788888888743 23444555554
Done!