Query 031226
Match_columns 163
No_of_seqs 143 out of 1203
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 11:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 7.2E-30 1.6E-34 161.0 16.5 151 5-156 5-157 (160)
2 KOG0027 Calmodulin and related 100.0 1.4E-27 3.1E-32 153.1 15.9 141 16-156 5-150 (151)
3 PTZ00183 centrin; Provisional 99.9 1.5E-24 3.4E-29 140.2 17.0 148 8-155 5-154 (158)
4 PTZ00184 calmodulin; Provision 99.9 5.1E-24 1.1E-28 136.5 16.9 144 12-155 3-148 (149)
5 KOG0031 Myosin regulatory ligh 99.9 1.4E-23 3E-28 129.1 16.0 147 4-154 16-164 (171)
6 KOG0028 Ca2+-binding protein ( 99.9 1.2E-23 2.6E-28 130.3 14.7 143 13-155 26-170 (172)
7 KOG0030 Myosin essential light 99.9 9.2E-21 2E-25 114.9 13.2 138 16-154 8-150 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 3.5E-20 7.5E-25 121.0 14.8 139 14-156 27-176 (187)
9 KOG0037 Ca2+-binding protein, 99.8 6.8E-19 1.5E-23 114.8 14.9 132 18-155 56-188 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5.1E-19 1.1E-23 115.6 13.9 140 16-155 23-175 (193)
11 KOG0036 Predicted mitochondria 99.8 5.4E-18 1.2E-22 119.8 15.1 136 16-156 11-147 (463)
12 KOG4223 Reticulocalbin, calume 99.6 2.1E-14 4.6E-19 99.0 9.9 152 11-162 67-235 (325)
13 PLN02964 phosphatidylserine de 99.6 1.1E-13 2.4E-18 105.3 14.0 103 13-119 136-243 (644)
14 KOG0027 Calmodulin and related 99.5 2.2E-13 4.7E-18 87.4 11.7 105 54-158 7-116 (151)
15 KOG4223 Reticulocalbin, calume 99.5 1.1E-13 2.4E-18 95.6 9.3 137 16-152 160-302 (325)
16 KOG0377 Protein serine/threoni 99.5 1.6E-12 3.4E-17 93.4 13.9 138 16-155 461-615 (631)
17 KOG0037 Ca2+-binding protein, 99.5 4.3E-13 9.3E-18 88.0 10.0 84 18-107 123-206 (221)
18 COG5126 FRQ1 Ca2+-binding prot 99.5 1.4E-12 2.9E-17 82.9 11.5 103 16-119 53-156 (160)
19 KOG0044 Ca2+ sensor (EF-Hand s 99.5 5.1E-13 1.1E-17 87.6 9.8 104 16-119 61-175 (193)
20 PTZ00183 centrin; Provisional 99.5 1.9E-12 4E-17 83.6 12.5 103 17-119 51-154 (158)
21 cd05022 S-100A13 S-100A13: S-1 99.5 1.9E-13 4.1E-18 79.3 6.8 66 90-155 7-75 (89)
22 PF13499 EF-hand_7: EF-hand do 99.5 2.3E-13 5.1E-18 75.1 6.8 62 92-153 1-66 (66)
23 cd05022 S-100A13 S-100A13: S-1 99.4 9.4E-13 2E-17 76.3 7.7 70 16-85 5-77 (89)
24 PTZ00184 calmodulin; Provision 99.4 5E-12 1.1E-16 80.7 11.8 102 55-156 11-113 (149)
25 PF13499 EF-hand_7: EF-hand do 99.4 1.1E-12 2.3E-17 72.5 7.3 62 20-81 1-66 (66)
26 cd05027 S-100B S-100B: S-100B 99.4 2.5E-12 5.4E-17 74.7 7.7 66 90-155 7-79 (88)
27 cd05027 S-100B S-100B: S-100B 99.4 6.5E-12 1.4E-16 72.9 8.6 69 16-84 5-80 (88)
28 KOG0038 Ca2+-binding kinase in 99.4 6.5E-12 1.4E-16 77.3 8.1 137 16-156 25-178 (189)
29 KOG2643 Ca2+ binding protein, 99.3 3.5E-11 7.6E-16 86.3 11.7 140 16-160 315-458 (489)
30 cd05029 S-100A6 S-100A6: S-100 99.3 2.2E-11 4.8E-16 70.7 7.4 67 90-156 9-80 (88)
31 cd05029 S-100A6 S-100A6: S-100 99.3 5.1E-11 1.1E-15 69.2 8.7 69 16-84 7-80 (88)
32 smart00027 EH Eps15 homology d 99.3 3.7E-11 8E-16 71.2 8.2 70 13-84 3-73 (96)
33 cd05031 S-100A10_like S-100A10 99.3 3.4E-11 7.4E-16 71.1 7.5 66 90-155 7-79 (94)
34 cd05026 S-100Z S-100Z: S-100Z 99.3 4.2E-11 9.1E-16 70.4 7.6 67 90-156 9-82 (93)
35 cd05025 S-100A1 S-100A1: S-100 99.3 4.4E-11 9.6E-16 70.3 7.7 67 90-156 8-81 (92)
36 PF13833 EF-hand_8: EF-hand do 99.3 1.7E-11 3.8E-16 64.8 5.4 52 104-155 1-53 (54)
37 KOG0034 Ca2+/calmodulin-depend 99.3 1.3E-10 2.8E-15 76.3 10.5 100 21-120 68-176 (187)
38 cd05026 S-100Z S-100Z: S-100Z 99.2 1.3E-10 2.7E-15 68.4 8.8 70 16-85 7-83 (93)
39 cd05025 S-100A1 S-100A1: S-100 99.2 1E-10 2.3E-15 68.7 8.5 70 16-85 6-82 (92)
40 PLN02964 phosphatidylserine de 99.2 1.7E-10 3.6E-15 88.3 11.6 120 33-156 118-244 (644)
41 KOG0028 Ca2+-binding protein ( 99.2 4E-10 8.7E-15 70.6 11.2 104 16-119 66-170 (172)
42 cd05031 S-100A10_like S-100A10 99.2 1.3E-10 2.8E-15 68.6 8.2 68 17-84 6-80 (94)
43 cd00052 EH Eps15 homology doma 99.2 7.7E-11 1.7E-15 65.1 6.7 60 94-155 2-61 (67)
44 cd00213 S-100 S-100: S-100 dom 99.2 1.8E-10 3.9E-15 67.2 7.8 69 16-84 5-80 (88)
45 cd00052 EH Eps15 homology doma 99.2 1.5E-10 3.2E-15 63.9 7.1 61 22-84 2-62 (67)
46 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.7E-15 60.9 6.5 52 32-83 1-53 (54)
47 smart00027 EH Eps15 homology d 99.2 2.2E-10 4.7E-15 67.9 7.6 65 89-155 8-72 (96)
48 cd00213 S-100 S-100: S-100 dom 99.2 2E-10 4.3E-15 67.0 7.1 67 90-156 7-80 (88)
49 cd00051 EFh EF-hand, calcium b 99.2 3E-10 6.5E-15 61.4 7.4 61 93-153 2-62 (63)
50 cd00252 SPARC_EC SPARC_EC; ext 99.2 3E-10 6.4E-15 69.1 7.9 64 89-156 46-109 (116)
51 cd05023 S-100A11 S-100A11: S-1 99.2 3E-10 6.6E-15 66.0 7.6 67 90-156 8-81 (89)
52 KOG0040 Ca2+-binding actin-bun 99.1 1.4E-09 3E-14 88.0 12.6 137 10-154 2243-2397(2399)
53 cd00051 EFh EF-hand, calcium b 99.1 6.8E-10 1.5E-14 59.9 7.8 61 21-81 2-62 (63)
54 KOG0036 Predicted mitochondria 99.1 2.6E-09 5.7E-14 76.5 11.9 126 17-152 49-180 (463)
55 cd05023 S-100A11 S-100A11: S-1 99.1 1.3E-09 2.7E-14 63.4 8.7 69 16-84 6-81 (89)
56 PF14658 EF-hand_9: EF-hand do 99.1 6.4E-10 1.4E-14 59.9 6.5 62 23-84 2-65 (66)
57 KOG4251 Calcium binding protei 99.1 1.2E-09 2.5E-14 73.3 8.5 139 16-154 98-308 (362)
58 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.3E-09 4.9E-14 65.3 7.8 62 16-81 45-106 (116)
59 cd05030 calgranulins Calgranul 99.0 2.4E-09 5.2E-14 62.3 6.5 68 90-157 7-81 (88)
60 PF14658 EF-hand_9: EF-hand do 99.0 2.9E-09 6.2E-14 57.4 6.0 61 95-155 2-64 (66)
61 KOG2562 Protein phosphatase 2 98.9 1.6E-08 3.4E-13 73.5 10.4 128 21-151 280-420 (493)
62 cd05030 calgranulins Calgranul 98.9 9.1E-09 2E-13 59.9 7.4 69 16-84 5-80 (88)
63 KOG2643 Ca2+ binding protein, 98.9 2.7E-08 5.9E-13 71.9 9.4 134 16-154 230-383 (489)
64 KOG0041 Predicted Ca2+-binding 98.8 7.1E-08 1.5E-12 62.9 9.5 104 14-117 93-201 (244)
65 cd05024 S-100A10 S-100A10: A s 98.8 1.4E-07 3.1E-12 54.4 8.7 69 16-85 5-78 (91)
66 cd05024 S-100A10 S-100A10: A s 98.7 1.5E-07 3.2E-12 54.4 7.8 65 90-155 7-76 (91)
67 KOG2562 Protein phosphatase 2 98.7 1.3E-07 2.8E-12 68.9 8.4 138 16-156 222-380 (493)
68 PF00036 EF-hand_1: EF hand; 98.7 4.7E-08 1E-12 44.4 3.6 28 20-47 1-28 (29)
69 KOG0169 Phosphoinositide-speci 98.7 1.4E-06 3.1E-11 67.1 13.4 141 16-160 133-279 (746)
70 KOG0041 Predicted Ca2+-binding 98.6 2.5E-07 5.4E-12 60.4 7.5 66 91-156 99-164 (244)
71 KOG0031 Myosin regulatory ligh 98.6 1.9E-06 4E-11 54.1 10.9 99 54-156 31-130 (171)
72 KOG0030 Myosin essential light 98.6 9.9E-07 2.2E-11 54.3 9.2 103 53-155 9-116 (152)
73 PF00036 EF-hand_1: EF hand; 98.6 1.1E-07 2.4E-12 43.2 3.6 25 94-118 3-27 (29)
74 KOG4666 Predicted phosphate ac 98.6 1.5E-07 3.3E-12 65.7 5.3 122 30-156 238-360 (412)
75 PF12763 EF-hand_4: Cytoskelet 98.5 8.4E-07 1.8E-11 53.0 7.0 69 13-84 3-72 (104)
76 KOG0751 Mitochondrial aspartat 98.5 3.4E-06 7.5E-11 62.3 10.5 101 18-120 32-137 (694)
77 PF14788 EF-hand_10: EF hand; 98.5 1.2E-06 2.5E-11 44.7 5.7 50 35-84 1-50 (51)
78 PF13405 EF-hand_6: EF-hand do 98.4 4.2E-07 9.2E-12 42.0 3.7 30 20-49 1-31 (31)
79 PF14788 EF-hand_10: EF hand; 98.4 1E-06 2.2E-11 44.9 4.9 47 108-154 2-48 (51)
80 KOG0377 Protein serine/threoni 98.4 2.8E-06 6.1E-11 61.9 8.1 67 17-83 545-615 (631)
81 KOG0038 Ca2+-binding kinase in 98.4 5E-06 1.1E-10 51.7 8.0 99 22-120 74-178 (189)
82 PF13405 EF-hand_6: EF-hand do 98.3 9.4E-07 2E-11 40.8 3.6 26 93-118 2-27 (31)
83 PF12763 EF-hand_4: Cytoskelet 98.3 7E-06 1.5E-10 49.0 7.2 64 88-154 7-70 (104)
84 PRK12309 transaldolase/EF-hand 98.2 1.5E-05 3.3E-10 58.5 9.3 57 86-155 329-385 (391)
85 PF10591 SPARC_Ca_bdg: Secrete 98.2 1.5E-06 3.3E-11 52.8 3.2 66 85-152 48-113 (113)
86 PF13202 EF-hand_5: EF hand; P 98.2 3E-06 6.5E-11 37.0 3.1 24 21-44 1-24 (25)
87 PF13202 EF-hand_5: EF hand; P 98.1 3.8E-06 8.3E-11 36.7 3.0 21 95-115 3-23 (25)
88 PRK12309 transaldolase/EF-hand 98.1 1.8E-05 4E-10 58.1 8.2 59 49-120 328-386 (391)
89 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.4E-06 3E-11 53.0 1.9 62 16-79 51-112 (113)
90 KOG0751 Mitochondrial aspartat 98.1 2E-05 4.3E-10 58.5 7.7 108 22-136 111-224 (694)
91 KOG0040 Ca2+-binding actin-bun 98.1 3.4E-05 7.3E-10 63.9 9.5 93 56-149 2254-2355(2399)
92 KOG0046 Ca2+-binding actin-bun 98.1 2.7E-05 5.9E-10 58.0 7.6 78 7-85 6-87 (627)
93 KOG1029 Endocytic adaptor prot 97.9 0.00013 2.7E-09 57.0 9.6 136 14-154 10-256 (1118)
94 PF09279 EF-hand_like: Phospho 97.9 2.9E-05 6.4E-10 44.5 4.8 67 93-160 2-74 (83)
95 KOG4666 Predicted phosphate ac 97.6 0.00039 8.5E-09 49.2 6.7 101 19-120 259-360 (412)
96 KOG4065 Uncharacterized conser 97.6 0.00039 8.4E-09 41.7 5.7 59 94-152 70-142 (144)
97 KOG1707 Predicted Ras related/ 97.5 0.0012 2.5E-08 50.4 9.2 140 11-154 186-376 (625)
98 smart00054 EFh EF-hand, calciu 97.4 0.00035 7.7E-09 30.6 3.1 27 21-47 2-28 (29)
99 PF09279 EF-hand_like: Phospho 97.3 0.00088 1.9E-08 38.3 5.2 64 20-84 1-70 (83)
100 KOG4251 Calcium binding protei 97.3 0.00033 7.2E-09 47.7 3.8 67 90-156 100-169 (362)
101 KOG0046 Ca2+-binding actin-bun 97.3 0.0013 2.7E-08 49.6 6.6 65 90-155 18-85 (627)
102 PF05042 Caleosin: Caleosin re 97.2 0.0032 7E-08 40.7 7.4 137 19-156 7-167 (174)
103 KOG3555 Ca2+-binding proteogly 97.2 0.00076 1.7E-08 48.1 4.8 70 87-160 246-315 (434)
104 smart00054 EFh EF-hand, calciu 97.1 0.0014 3E-08 28.6 3.5 23 95-117 4-26 (29)
105 PLN02952 phosphoinositide phos 96.8 0.028 6.1E-07 43.9 10.2 88 68-156 13-111 (599)
106 KOG0169 Phosphoinositide-speci 96.8 0.017 3.6E-07 45.6 8.9 100 53-156 134-233 (746)
107 KOG1955 Ral-GTPase effector RA 96.6 0.0074 1.6E-07 45.4 6.0 74 10-85 221-295 (737)
108 KOG0035 Ca2+-binding actin-bun 96.6 0.026 5.7E-07 45.6 9.1 103 12-115 739-848 (890)
109 KOG1265 Phospholipase C [Lipid 96.5 0.16 3.5E-06 41.2 12.9 125 29-159 158-303 (1189)
110 KOG4065 Uncharacterized conser 96.5 0.019 4E-07 34.7 6.0 59 22-80 70-142 (144)
111 KOG3555 Ca2+-binding proteogly 96.4 0.014 3E-07 41.9 5.8 64 18-85 249-312 (434)
112 KOG1955 Ral-GTPase effector RA 96.1 0.018 3.8E-07 43.4 5.6 63 90-154 230-292 (737)
113 KOG0042 Glycerol-3-phosphate d 96.0 0.022 4.7E-07 43.7 5.5 77 11-87 584-661 (680)
114 KOG4578 Uncharacterized conser 95.9 0.0094 2E-07 42.5 3.2 65 92-158 334-401 (421)
115 KOG4347 GTPase-activating prot 95.8 0.019 4E-07 44.6 4.6 77 36-113 535-612 (671)
116 PF05517 p25-alpha: p25-alpha 95.6 0.082 1.8E-06 34.1 6.4 48 71-118 18-68 (154)
117 PF05517 p25-alpha: p25-alpha 95.6 0.13 2.8E-06 33.2 7.2 64 22-85 2-71 (154)
118 KOG0998 Synaptic vesicle prote 95.5 0.019 4.1E-07 46.8 3.9 137 14-155 123-345 (847)
119 PF09069 EF-hand_3: EF-hand; 95.4 0.25 5.4E-06 28.7 7.3 64 90-156 2-76 (90)
120 KOG2243 Ca2+ release channel ( 95.3 0.04 8.6E-07 46.8 5.1 60 24-84 4062-4121(5019)
121 PF08726 EFhand_Ca_insen: Ca2+ 95.1 0.011 2.4E-07 32.5 1.1 57 89-153 4-67 (69)
122 KOG0042 Glycerol-3-phosphate d 94.8 0.059 1.3E-06 41.5 4.4 68 92-159 594-661 (680)
123 PF08976 DUF1880: Domain of un 94.7 0.04 8.6E-07 33.3 2.7 33 124-156 4-36 (118)
124 KOG1029 Endocytic adaptor prot 94.7 0.071 1.5E-06 42.5 4.7 66 16-83 192-257 (1118)
125 KOG2243 Ca2+ release channel ( 94.4 0.088 1.9E-06 44.9 4.9 61 96-157 4062-4122(5019)
126 KOG4578 Uncharacterized conser 94.1 0.048 1E-06 39.1 2.5 63 58-120 336-399 (421)
127 PF05042 Caleosin: Caleosin re 94.0 0.44 9.5E-06 31.2 6.6 30 18-47 95-124 (174)
128 PLN02952 phosphoinositide phos 93.6 1.6 3.4E-05 34.6 10.1 87 32-119 13-110 (599)
129 KOG3866 DNA-binding protein of 93.6 0.18 3.8E-06 36.0 4.6 65 93-157 246-326 (442)
130 KOG1264 Phospholipase C [Lipid 93.0 0.52 1.1E-05 38.3 6.8 139 19-158 144-296 (1267)
131 KOG4347 GTPase-activating prot 93.0 0.8 1.7E-05 36.0 7.5 61 16-77 552-612 (671)
132 KOG0035 Ca2+-binding actin-bun 92.1 0.51 1.1E-05 38.6 5.8 68 91-158 747-819 (890)
133 PF08414 NADPH_Ox: Respiratory 91.4 1.2 2.6E-05 26.3 5.4 61 19-84 30-93 (100)
134 PLN02222 phosphoinositide phos 91.4 1.7 3.7E-05 34.2 7.8 65 90-156 24-91 (581)
135 PLN02228 Phosphoinositide phos 89.5 3.6 7.8E-05 32.4 8.1 63 91-155 24-92 (567)
136 PF09069 EF-hand_3: EF-hand; 89.5 2.8 6E-05 24.4 7.4 62 19-83 3-75 (90)
137 KOG3866 DNA-binding protein of 89.5 0.94 2E-05 32.5 4.6 89 24-118 249-353 (442)
138 PLN02230 phosphoinositide phos 89.3 3.5 7.7E-05 32.7 8.0 66 90-156 28-103 (598)
139 KOG0998 Synaptic vesicle prote 87.6 0.29 6.2E-06 40.3 1.3 67 16-84 280-346 (847)
140 cd07313 terB_like_2 tellurium 87.2 4.3 9.4E-05 23.9 6.0 80 32-113 12-94 (104)
141 KOG4286 Dystrophin-like protei 87.1 4.2 9.1E-05 33.0 7.1 137 16-155 417-580 (966)
142 PF11116 DUF2624: Protein of u 87.0 4.1 8.9E-05 23.4 7.2 50 35-84 14-63 (85)
143 KOG2871 Uncharacterized conser 86.5 0.83 1.8E-05 33.6 3.0 65 90-154 308-373 (449)
144 KOG1707 Predicted Ras related/ 86.4 2.6 5.6E-05 33.1 5.6 84 14-103 309-398 (625)
145 PF08976 DUF1880: Domain of un 85.2 1 2.2E-05 27.4 2.4 32 52-83 4-35 (118)
146 PF07308 DUF1456: Protein of u 84.6 4.9 0.00011 22.0 5.2 47 108-154 14-60 (68)
147 KOG1265 Phospholipase C [Lipid 83.8 12 0.00026 31.3 8.3 69 16-84 218-300 (1189)
148 KOG3077 Uncharacterized conser 83.7 13 0.00028 26.2 12.2 70 16-85 61-131 (260)
149 PLN02222 phosphoinositide phos 83.5 7.7 0.00017 30.8 7.1 66 16-83 22-90 (581)
150 PLN02228 Phosphoinositide phos 83.0 10 0.00022 30.1 7.6 66 16-83 21-92 (567)
151 PLN02230 phosphoinositide phos 82.9 10 0.00022 30.3 7.6 67 16-83 26-102 (598)
152 KOG0039 Ferric reductase, NADH 80.8 5.6 0.00012 32.1 5.7 77 72-154 4-88 (646)
153 KOG2871 Uncharacterized conser 80.8 1.8 3.8E-05 32.0 2.7 67 17-83 307-374 (449)
154 PF11116 DUF2624: Protein of u 79.9 9.3 0.0002 22.0 5.6 51 71-121 14-64 (85)
155 PF00404 Dockerin_1: Dockerin 79.5 3.5 7.6E-05 16.9 2.3 17 29-45 1-17 (21)
156 PF12174 RST: RCD1-SRO-TAF4 (R 79.4 4 8.7E-05 22.5 3.3 47 71-120 8-54 (70)
157 PF01023 S_100: S-100/ICaBP ty 79.2 6.1 0.00013 19.5 4.1 31 17-47 4-36 (44)
158 PF09068 EF-hand_2: EF hand; 78.3 14 0.0003 23.1 7.5 28 92-119 98-125 (127)
159 KOG4004 Matricellular protein 77.8 0.88 1.9E-05 30.5 0.4 47 68-116 201-247 (259)
160 PF03672 UPF0154: Uncharacteri 77.4 9.3 0.0002 20.7 4.4 33 32-64 28-60 (64)
161 PF02761 Cbl_N2: CBL proto-onc 76.8 12 0.00026 21.5 5.5 49 35-83 22-70 (85)
162 PF14513 DAG_kinase_N: Diacylg 76.7 7.6 0.00016 24.6 4.3 69 34-104 6-82 (138)
163 COG3763 Uncharacterized protei 76.4 11 0.00023 20.8 4.8 34 31-64 34-67 (71)
164 PLN02223 phosphoinositide phos 75.9 22 0.00047 28.1 7.3 67 90-157 15-94 (537)
165 KOG1785 Tyrosine kinase negati 75.1 34 0.00073 25.9 8.2 85 33-120 188-275 (563)
166 PRK00523 hypothetical protein; 74.2 13 0.00028 20.6 4.4 33 32-64 36-68 (72)
167 PF08414 NADPH_Ox: Respiratory 74.1 16 0.00034 21.7 5.8 62 54-120 29-93 (100)
168 PF12174 RST: RCD1-SRO-TAF4 (R 73.7 4.6 0.0001 22.3 2.5 49 35-86 8-56 (70)
169 KOG4403 Cell surface glycoprot 73.5 34 0.00073 26.2 7.5 98 31-132 40-143 (575)
170 PF14513 DAG_kinase_N: Diacylg 73.3 20 0.00043 22.7 5.6 67 70-138 6-80 (138)
171 KOG3449 60S acidic ribosomal p 73.2 18 0.00039 21.9 6.5 53 23-80 5-57 (112)
172 PLN02223 phosphoinositide phos 72.7 25 0.00054 27.8 6.9 67 16-83 13-92 (537)
173 COG4359 Uncharacterized conser 71.8 24 0.00053 23.7 5.8 15 69-83 11-25 (220)
174 cd07313 terB_like_2 tellurium 70.9 6.2 0.00013 23.2 2.9 75 69-148 13-93 (104)
175 TIGR01848 PHA_reg_PhaR polyhyd 70.3 15 0.00033 22.1 4.3 20 64-83 12-31 (107)
176 PF02761 Cbl_N2: CBL proto-onc 69.8 19 0.00041 20.7 6.4 68 52-120 4-71 (85)
177 KOG4301 Beta-dystrobrevin [Cyt 69.2 35 0.00076 25.3 6.6 93 58-156 113-216 (434)
178 KOG4403 Cell surface glycoprot 69.2 11 0.00024 28.6 4.2 53 67-119 40-96 (575)
179 PRK01844 hypothetical protein; 67.5 19 0.00041 20.0 4.3 33 32-64 35-67 (72)
180 KOG4070 Putative signal transd 65.1 19 0.00042 23.2 4.2 86 17-102 10-109 (180)
181 PF08461 HTH_12: Ribonuclease 62.4 14 0.0003 20.0 2.9 37 104-140 10-46 (66)
182 KOG3449 60S acidic ribosomal p 60.4 36 0.00078 20.6 6.2 53 95-152 5-57 (112)
183 PF07879 PHB_acc_N: PHB/PHA ac 59.7 18 0.0004 19.5 2.9 21 99-119 11-31 (64)
184 KOG2301 Voltage-gated Ca2+ cha 59.1 17 0.00037 32.6 4.2 71 13-84 1410-1485(1592)
185 cd07176 terB tellurite resista 58.4 29 0.00063 20.4 4.2 78 32-112 15-98 (111)
186 PF05099 TerB: Tellurite resis 57.5 23 0.00049 22.0 3.8 80 31-112 35-117 (140)
187 PF09336 Vps4_C: Vps4 C termin 57.4 17 0.00038 19.4 2.7 26 35-60 29-54 (62)
188 smart00549 TAFH TAF homology. 55.0 40 0.00086 19.7 4.0 18 141-158 37-54 (92)
189 TIGR01639 P_fal_TIGR01639 Plas 54.9 32 0.00069 18.3 3.6 31 106-136 8-38 (61)
190 KOG0506 Glutaminase (contains 54.6 43 0.00094 26.1 5.2 64 94-157 89-160 (622)
191 PF13623 SurA_N_2: SurA N-term 54.0 56 0.0012 20.9 6.9 40 114-153 96-145 (145)
192 PF12486 DUF3702: ImpA domain 53.6 58 0.0013 21.0 5.4 32 16-47 66-97 (148)
193 PF03979 Sigma70_r1_1: Sigma-7 52.9 17 0.00037 20.6 2.4 30 105-136 19-48 (82)
194 PF01885 PTS_2-RNA: RNA 2'-pho 52.8 35 0.00075 22.9 4.1 37 29-65 26-62 (186)
195 PF12419 DUF3670: SNF2 Helicas 50.4 37 0.00081 21.5 3.9 49 104-152 80-138 (141)
196 KOG0506 Glutaminase (contains 49.5 63 0.0014 25.3 5.3 60 23-82 90-157 (622)
197 TIGR03573 WbuX N-acetyl sugar 49.2 54 0.0012 24.3 5.0 43 105-153 300-342 (343)
198 PRK00819 RNA 2'-phosphotransfe 49.0 55 0.0012 21.8 4.6 43 30-75 28-70 (179)
199 KOG2557 Uncharacterized conser 48.9 86 0.0019 23.6 5.8 50 71-120 74-123 (427)
200 PF07531 TAFH: NHR1 homology t 48.8 11 0.00024 22.3 1.1 21 141-161 38-58 (96)
201 PF07308 DUF1456: Protein of u 48.7 45 0.00098 18.3 5.2 29 37-65 15-43 (68)
202 PF04157 EAP30: EAP30/Vps36 fa 48.0 64 0.0014 22.2 5.0 110 20-135 98-213 (223)
203 PF11829 DUF3349: Protein of u 47.8 58 0.0013 19.3 5.1 48 36-83 20-67 (96)
204 KOG1954 Endocytosis/signaling 46.5 31 0.00066 26.1 3.3 56 93-151 446-501 (532)
205 PTZ00373 60S Acidic ribosomal 46.0 68 0.0015 19.6 6.2 51 96-151 8-58 (112)
206 PF01885 PTS_2-RNA: RNA 2'-pho 45.4 43 0.00094 22.4 3.7 35 102-136 27-61 (186)
207 PF10437 Lip_prot_lig_C: Bacte 43.9 56 0.0012 18.5 3.7 42 110-153 44-86 (86)
208 PRK09430 djlA Dna-J like membr 42.5 1.2E+02 0.0027 21.6 9.5 96 31-135 67-174 (267)
209 PF07492 Trehalase_Ca-bi: Neut 42.5 7.3 0.00016 17.5 -0.2 18 131-148 3-20 (30)
210 PRK00819 RNA 2'-phosphotransfe 42.4 64 0.0014 21.5 4.1 32 66-97 28-59 (179)
211 KOG1954 Endocytosis/signaling 41.9 38 0.00082 25.7 3.2 22 92-113 478-499 (532)
212 PF04558 tRNA_synt_1c_R1: Glut 41.8 1E+02 0.0022 20.3 5.4 62 74-136 68-129 (164)
213 PF08044 DUF1707: Domain of un 41.2 53 0.0011 16.9 3.1 32 31-62 19-50 (53)
214 CHL00185 ycf59 magnesium-proto 39.9 1.1E+02 0.0023 22.7 5.1 10 92-101 111-120 (351)
215 PF05872 DUF853: Bacterial pro 39.5 1.3E+02 0.0029 23.6 5.8 37 13-49 121-158 (502)
216 PRK10945 gene expression modul 39.0 71 0.0015 17.7 3.3 42 72-120 6-47 (72)
217 PF09107 SelB-wing_3: Elongati 39.0 55 0.0012 16.7 2.7 29 33-66 8-36 (50)
218 KOG0039 Ferric reductase, NADH 38.9 1.1E+02 0.0023 25.1 5.5 77 36-118 4-88 (646)
219 PRK13654 magnesium-protoporphy 38.4 1.1E+02 0.0024 22.7 5.0 10 92-101 115-124 (355)
220 KOG0148 Apoptosis-promoting RN 38.3 13 0.00028 26.5 0.4 67 52-118 18-84 (321)
221 KOG4286 Dystrophin-like protei 38.1 67 0.0014 26.7 4.2 95 20-117 471-578 (966)
222 PF00690 Cation_ATPase_N: Cati 36.2 72 0.0016 17.1 3.4 28 94-121 7-34 (69)
223 TIGR03573 WbuX N-acetyl sugar 36.2 1.3E+02 0.0028 22.3 5.3 58 48-117 285-342 (343)
224 cd08316 Death_FAS_TNFRSF6 Deat 36.1 95 0.0021 18.4 7.4 77 35-134 17-93 (97)
225 cd00086 homeodomain Homeodomai 35.9 63 0.0014 16.3 5.3 41 16-63 10-50 (59)
226 CHL00185 ycf59 magnesium-proto 35.2 90 0.0019 23.1 4.1 67 16-82 38-106 (351)
227 cd01047 ACSF Aerobic Cyclase S 34.8 1.1E+02 0.0025 22.3 4.6 89 16-109 22-115 (323)
228 PF08100 Dimerisation: Dimeris 34.7 24 0.00051 18.1 1.0 22 25-46 12-33 (51)
229 cd07316 terB_like_DjlA N-termi 34.7 96 0.0021 18.0 7.9 79 32-112 12-94 (106)
230 COG4103 Uncharacterized protei 34.5 1.3E+02 0.0028 19.4 7.3 91 23-118 34-128 (148)
231 PRK13654 magnesium-protoporphy 34.3 77 0.0017 23.5 3.7 66 16-81 42-109 (355)
232 TIGR02029 AcsF magnesium-proto 33.9 1.2E+02 0.0027 22.3 4.6 81 18-103 34-116 (337)
233 PF07128 DUF1380: Protein of u 33.6 95 0.0021 19.8 3.6 31 108-138 27-57 (139)
234 cd05833 Ribosomal_P2 Ribosomal 33.4 1.1E+02 0.0025 18.5 6.2 56 96-156 6-61 (109)
235 TIGR03798 ocin_TIGR03798 bacte 33.3 82 0.0018 16.8 3.3 25 108-132 25-49 (64)
236 PF06648 DUF1160: Protein of u 33.2 1.2E+02 0.0027 18.8 4.1 25 108-132 51-76 (122)
237 cd01047 ACSF Aerobic Cyclase S 33.2 1.8E+02 0.0038 21.4 5.3 88 47-139 17-106 (323)
238 PRK10391 oriC-binding nucleoid 33.1 77 0.0017 17.5 2.8 26 73-101 2-27 (71)
239 PF07862 Nif11: Nitrogen fixat 33.0 69 0.0015 15.9 2.8 21 109-129 28-48 (49)
240 KOG4629 Predicted mechanosensi 32.5 1.1E+02 0.0024 25.3 4.7 57 92-155 405-461 (714)
241 PHA03155 hypothetical protein; 32.2 1.2E+02 0.0027 18.5 4.5 84 36-121 8-91 (115)
242 PF05819 NolX: NolX protein; 31.9 2.6E+02 0.0057 22.2 9.5 68 91-159 368-446 (624)
243 KOG4301 Beta-dystrobrevin [Cyt 31.4 1.1E+02 0.0023 22.9 4.1 59 25-84 116-174 (434)
244 PF02337 Gag_p10: Retroviral G 31.3 93 0.002 18.2 3.1 21 116-136 17-37 (90)
245 PLN02508 magnesium-protoporphy 30.9 1.7E+02 0.0037 21.8 4.9 9 105-113 93-101 (357)
246 PRK09430 djlA Dna-J like membr 30.8 1.3E+02 0.0028 21.5 4.4 51 69-120 69-121 (267)
247 PHA02105 hypothetical protein 30.0 93 0.002 16.4 3.2 49 35-83 4-57 (68)
248 COG5562 Phage envelope protein 30.0 36 0.00077 21.5 1.3 21 135-155 80-100 (137)
249 PF07499 RuvA_C: RuvA, C-termi 29.2 82 0.0018 15.5 4.5 41 111-155 4-44 (47)
250 PF12767 SAGA-Tad1: Transcript 28.7 1.6E+02 0.0035 20.7 4.6 15 70-84 40-54 (252)
251 PF08349 DUF1722: Protein of u 28.3 1.4E+02 0.0031 18.1 5.1 38 117-154 59-96 (117)
252 PF09373 PMBR: Pseudomurein-bi 28.2 71 0.0015 14.5 2.1 14 105-118 2-15 (33)
253 PF06384 ICAT: Beta-catenin-in 28.1 94 0.002 17.6 2.7 20 112-131 21-40 (78)
254 PF08671 SinI: Anti-repressor 27.9 60 0.0013 14.6 1.6 11 108-118 17-27 (30)
255 TIGR00135 gatC glutamyl-tRNA(G 27.9 1.3E+02 0.0028 17.4 3.8 26 108-133 1-26 (93)
256 PRK14981 DNA-directed RNA poly 26.7 1.6E+02 0.0034 17.9 3.8 13 52-64 79-91 (112)
257 COG2818 Tag 3-methyladenine DN 26.3 93 0.002 20.9 2.8 47 16-62 52-98 (188)
258 TIGR02029 AcsF magnesium-proto 26.0 1.1E+02 0.0025 22.5 3.4 16 49-64 29-44 (337)
259 PF04876 Tenui_NCP: Tenuivirus 26.0 1.9E+02 0.0042 18.7 7.1 56 56-119 84-139 (175)
260 TIGR02675 tape_meas_nterm tape 25.6 1.2E+02 0.0026 16.8 2.9 30 16-47 13-42 (75)
261 PF14848 HU-DNA_bdg: DNA-bindi 25.6 1.7E+02 0.0037 18.0 3.9 32 105-136 26-57 (124)
262 PF12872 OST-HTH: OST-HTH/LOTU 25.5 1.2E+02 0.0026 16.2 6.5 51 18-81 7-57 (74)
263 PLN02508 magnesium-protoporphy 25.5 2.1E+02 0.0047 21.3 4.7 83 16-103 38-122 (357)
264 PF05872 DUF853: Bacterial pro 25.3 3.5E+02 0.0075 21.4 8.3 101 35-148 105-220 (502)
265 PF03556 Cullin_binding: Culli 24.9 1.7E+02 0.0038 17.9 5.5 45 103-153 72-116 (117)
266 cd07177 terB_like tellurium re 24.8 1.4E+02 0.0031 16.9 5.7 16 33-48 13-28 (104)
267 PF04433 SWIRM: SWIRM domain; 24.8 56 0.0012 18.5 1.5 16 67-82 49-64 (86)
268 COG1460 Uncharacterized protei 23.8 1.4E+02 0.003 18.3 3.0 29 108-136 80-108 (114)
269 KOG2301 Voltage-gated Ca2+ cha 23.6 94 0.002 28.4 3.1 69 86-155 1412-1484(1592)
270 cd04411 Ribosomal_P1_P2_L12p R 23.3 1.8E+02 0.0039 17.5 7.3 45 108-157 17-61 (105)
271 cd03521 Link_domain_KIAA0527_l 23.3 1.4E+02 0.0031 17.5 2.9 39 97-135 3-42 (95)
272 cd07894 Adenylation_RNA_ligase 22.9 2.3E+02 0.005 21.1 4.7 96 25-120 131-239 (342)
273 COG0721 GatC Asp-tRNAAsn/Glu-t 22.7 1.8E+02 0.0038 17.2 3.6 30 107-136 2-31 (96)
274 PF14178 YppF: YppF-like prote 22.5 89 0.0019 16.7 1.8 16 33-48 34-49 (60)
275 TIGR01529 argR_whole arginine 22.2 2.2E+02 0.0048 18.2 4.6 35 31-65 12-46 (146)
276 TIGR02787 codY_Gpos GTP-sensin 22.0 3E+02 0.0065 19.6 4.8 34 11-45 174-208 (251)
277 KOG1264 Phospholipase C [Lipid 21.9 3.2E+02 0.007 23.5 5.5 92 65-157 154-251 (1267)
278 PF12631 GTPase_Cys_C: Catalyt 21.9 1.5E+02 0.0033 16.2 4.1 49 16-64 20-72 (73)
279 PF10025 DUF2267: Uncharacteri 21.7 1.9E+02 0.0041 17.7 3.5 14 144-157 69-82 (125)
280 PF11848 DUF3368: Domain of un 21.5 1.3E+02 0.0027 15.0 3.9 31 33-63 15-46 (48)
281 PRK00034 gatC aspartyl/glutamy 21.5 1.8E+02 0.0039 16.8 3.8 27 108-134 3-29 (95)
282 PF10281 Ish1: Putative stress 21.4 1.1E+02 0.0024 14.3 3.7 9 145-153 26-34 (38)
283 PF05321 HHA: Haemolysin expre 21.1 68 0.0015 16.9 1.2 12 124-135 23-34 (57)
284 PF13608 Potyvirid-P3: Protein 21.1 1.1E+02 0.0025 23.7 2.9 67 16-84 286-356 (445)
285 PRK09462 fur ferric uptake reg 20.9 2.3E+02 0.0051 17.9 5.5 46 16-64 17-62 (148)
286 KOG4629 Predicted mechanosensi 20.6 3.3E+02 0.0071 22.8 5.3 56 58-120 407-462 (714)
287 PF12238 MSA-2c: Merozoite sur 20.3 3E+02 0.0065 18.9 6.4 101 16-121 10-115 (205)
288 cd07357 HN_L-whirlin_R2_like S 20.3 97 0.0021 17.6 1.8 31 124-154 16-46 (81)
289 KOG2116 Protein involved in pl 20.1 1E+02 0.0023 25.2 2.5 39 103-141 536-575 (738)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=7.2e-30 Score=160.99 Aligned_cols=151 Identities=34% Similarity=0.564 Sum_probs=140.2
Q ss_pred hhhhhhhhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 5 TEADSNRKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
.+......+++ .++++|+++|..+|++++|.|+..+|..+++.++.+++..++.+++..+|. +.+.|+|.+|+.++..
T Consensus 5 ~~~~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 5 ISDLLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred hhhhhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHH
Confidence 33345556677 999999999999999999999999999999999999999999999999998 8899999999999998
Q ss_pred cC-CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 84 SS-GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 84 ~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
.. .....+.+.++|+.||.|++|+|+..++..+++.+|..+++++++.+++.+|.+++|.|+|++|.+.+...
T Consensus 84 ~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 84 KLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 77 55668999999999999999999999999999999999999999999999999999999999999987654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=153.07 Aligned_cols=141 Identities=43% Similarity=0.700 Sum_probs=132.4
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCc-----hH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA-----GE 90 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-----~~ 90 (163)
.++..+..+|..+|.+++|+|+..++..+++.++..++..++..++..+|.+++|.|++.+|+.++....... ..
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 6788999999999999999999999999999999999999999999999999999999999999998765321 24
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
+.++.+|+.||.+++|+|+.+||+.++..+|.+++.+++..++..+|.+++|.|+|++|++++...
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999999998754
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=1.5e-24 Score=140.23 Aligned_cols=148 Identities=32% Similarity=0.518 Sum_probs=134.9
Q ss_pred hhhhhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-
Q 031226 8 DSNRKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS- 85 (163)
Q Consensus 8 ~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~- 85 (163)
..+...++ .++..+..+|..+|.+++|.|+..+|..++..++..++...+..++..+|.+++|.|++.+|+.++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 84 (158)
T PTZ00183 5 RSERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG 84 (158)
T ss_pred ccccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc
Confidence 44555677 8899999999999999999999999999999998888999999999999999999999999999876643
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 86 GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 86 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
.....+.++.+|+.+|.+++|.|+.++|..++...+..++.+++..++..+|.+++|.|++++|..++.+
T Consensus 85 ~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 85 ERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3445678999999999999999999999999999999999999999999999999999999999999876
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=5.1e-24 Score=136.45 Aligned_cols=144 Identities=39% Similarity=0.653 Sum_probs=131.5
Q ss_pred hhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCch
Q 031226 12 KQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GAAG 89 (163)
Q Consensus 12 ~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~ 89 (163)
.+++ .++..++..|..+|.+++|.|+..+|..++..++..++...+..++..+|.+++|.|++++|+.++.... ....
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 3456 7788999999999999999999999999999999888899999999999999999999999999987653 3344
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
.+.+..+|..+|.+++|.|+.++|..++...+..++.+++..++..+|.+++|.|+++||+.++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 567899999999999999999999999999998999999999999999999999999999998865
No 5
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.93 E-value=1.4e-23 Score=129.12 Aligned_cols=147 Identities=24% Similarity=0.399 Sum_probs=135.4
Q ss_pred chhhhhhhhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 031226 4 TTEADSNRKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICR 82 (163)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 82 (163)
++..+.....++ .++++++++|..+|.|++|.|..++++..+..+|...++++++.++... +|.|+|.-|+.++-
T Consensus 16 ~rasSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfG 91 (171)
T KOG0031|consen 16 KRASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFG 91 (171)
T ss_pred ccccchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHH
Confidence 444555666777 8999999999999999999999999999999999999999999999765 78999999999998
Q ss_pred hcC-CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 83 TSS-GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 83 ~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
... ....++.+..+|..||.+++|.|..+.++++|...|.++++++|..+|+.+..+..|.|+|..|+..+.
T Consensus 92 ekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 92 EKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 755 556688899999999999999999999999999999999999999999999999999999999999987
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-23 Score=130.32 Aligned_cols=143 Identities=32% Similarity=0.586 Sum_probs=133.8
Q ss_pred hhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCchH
Q 031226 13 QLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GAAGE 90 (163)
Q Consensus 13 ~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~ 90 (163)
.++ ++.+.++..|..+|++++|+|+..||.-+++.+|..+..+++.+++..+|.++.|.|+|++|+..+.... .....
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 345 7779999999999999999999999999999999999999999999999999999999999999976654 55578
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
+.+..+|+.+|.|++|.|+..+|+.+.+.+|..++++++.+++..+|.+++|.|+-+||...+.+
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999988764
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=9.2e-21 Score=114.87 Aligned_cols=138 Identities=25% Similarity=0.425 Sum_probs=126.1
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHHhcC---CCchH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTD--KDGFISLSEFETICRTSS---GAAGE 90 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~---~~~~~ 90 (163)
++..+++.+|..+|..++|.|+..+...+|+.+|.+++..++.+.+..++.+ +-.+|+|++|+.++..+. .....
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 6678999999999999999999999999999999999999999999888776 447899999999988765 44557
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
+.+-+.++.||+.++|.|...|+++++..+|..++++++..++.-. .|.+|.|.|+.|++-+.
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999888 78899999999998764
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.86 E-value=3.5e-20 Score=120.99 Aligned_cols=139 Identities=29% Similarity=0.462 Sum_probs=117.5
Q ss_pred hH-HhHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCCCchH
Q 031226 14 LI-VSREEMQKIFNQFDAN-KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGF-ISLSEFETICRTSSGAAGE 90 (163)
Q Consensus 14 ~~-~~~~~~~~~f~~~d~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~ 90 (163)
++ .++..+...|.+++.+ ++|.|+.+||..+.... . ..-..++++.++..++|. |+|++|+..+.........
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~---Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-L---NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-c---CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 66 8999999999999999 99999999999998432 2 234557888888888888 9999999999998855544
Q ss_pred H-HHHHHHHHhcCCCCCcccHHHHHHHHHHh-CCCCC--HHH----HHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 91 A-ELREAFDLYDQDKNGLISAEELNLVLNRL-GIKCS--VDG----CVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 91 ~-~~~~~f~~~d~~~~g~i~~~e~~~~~~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
+ +++.+|+.||.+++|.|+.+|+.+++..+ +...+ ++. ++.++..+|.++||.|+++||++++.+.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 4 99999999999999999999999999886 33334 333 5678999999999999999999998875
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=6.8e-19 Score=114.84 Aligned_cols=132 Identities=25% Similarity=0.442 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHH
Q 031226 18 REEMQKIFNQFDANKDGKISLTELATVLKSMG-SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREA 96 (163)
Q Consensus 18 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 96 (163)
-..+...|...|.++.|.|+.+|+..+|.... ...+.+.+..++..+|.+..|.|++.||..++.. ...++.+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~------i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY------INQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH------HHHHHHH
Confidence 45788899999999999999999999998544 4578899999999999999999999999999999 6689999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 97 FDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 97 f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
|+.+|+|++|.|+..||++++..+|..++++-.+.+++.+|....|.|.+++|++++..
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888999999999998764
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=5.1e-19 Score=115.62 Aligned_cols=140 Identities=26% Similarity=0.416 Sum_probs=120.1
Q ss_pred HhHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHH
Q 031226 16 VSREEMQKIFNQFDAN-KDGKISLTELATVLKSMGS-SYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAEL 93 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~-~~g~i~~~ef~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 93 (163)
-+..+++.+++.+-.+ .+|.++..+|+.++..+.. .-+..-+..+|+.+|.+++|.|+|.||+..++........+.+
T Consensus 23 f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl 102 (193)
T KOG0044|consen 23 FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKL 102 (193)
T ss_pred CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHh
Confidence 5667777777777554 4899999999999999886 4456678889999999999999999999999999988889999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHh----CC------C-CCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLNRL----GI------K-CSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~~~----~~------~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
..+|+.||.|++|+|+++|+..+++.+ +. . ...+.+..+|..+|.|+||.||++||......
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 999999999999999999999988764 21 1 13455788999999999999999999987654
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.80 E-value=5.4e-18 Score=119.75 Aligned_cols=136 Identities=24% Similarity=0.434 Sum_probs=126.6
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSS-YKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELR 94 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 94 (163)
+...+++.+|..+|.+++|.++..++...+..+... +..+....+++.+|.+.+|.++|.+|..++... +..+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~ 85 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELY 85 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHH
Confidence 556788999999999999999999999999998876 778889999999999999999999999999873 56789
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 95 EAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
++|...|.+++|.|+.+|+.+.++..+..+++++++.+++.+|.++.+.|+++||.+++.-+
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999987643
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.1e-14 Score=99.02 Aligned_cols=152 Identities=25% Similarity=0.332 Sum_probs=124.2
Q ss_pred hhhhH--HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC---
Q 031226 11 RKQLI--VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS--- 85 (163)
Q Consensus 11 ~~~~~--~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~--- 85 (163)
..+++ .+...+..++.++|.+++|.|+..|+...+..........+..+-+..+|.+.+|.|+|++++.......
T Consensus 67 fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~ 146 (325)
T KOG4223|consen 67 FDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLP 146 (325)
T ss_pred hhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCc
Confidence 34455 6778899999999999999999999999998877777777888889999999999999999998876421
Q ss_pred -----CC------chHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHhhhhcCCCCCccchHHHHHHh
Q 031226 86 -----GA------AGEAELREAFDLYDQDKNGLISAEELNLVLNRLG-IKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 153 (163)
Q Consensus 86 -----~~------~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 153 (163)
.. .....-++-|+..|.|++|.++++||..++-..- ..+.+-.+..-+.-.|.|++|.|+++||+.=+
T Consensus 147 ~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 147 DEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred cccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 00 0112356689999999999999999999997653 45666678888999999999999999999998
Q ss_pred hccCCCCCC
Q 031226 154 TTSLKPGPA 162 (163)
Q Consensus 154 ~~~~~~~~~ 162 (163)
......+.+
T Consensus 227 ~~~~~~~~e 235 (325)
T KOG4223|consen 227 YSHEGNEEE 235 (325)
T ss_pred hhccCCCCC
Confidence 887765443
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.57 E-value=1.1e-13 Score=105.32 Aligned_cols=103 Identities=22% Similarity=0.390 Sum_probs=92.9
Q ss_pred hhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHhcCCC
Q 031226 13 QLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMG-SSYKEEE---LVRVMEDLDTDKDGFISLSEFETICRTSSGA 87 (163)
Q Consensus 13 ~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 87 (163)
.++ .++.++.++|..+|++++|.+ +..+++.++ ..+++.+ +..+|..+|.+++|.|+++||+.++..+...
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~ 211 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL 211 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC
Confidence 344 788999999999999999997 888888899 5788777 8999999999999999999999999887666
Q ss_pred chHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 88 AGEAELREAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 88 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
...+.+..+|+.+|.|++|.|+.+||..++..
T Consensus 212 ~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 212 VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 66788999999999999999999999999987
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.55 E-value=2.2e-13 Score=87.41 Aligned_cols=105 Identities=29% Similarity=0.392 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC-----CHHH
Q 031226 54 EEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKC-----SVDG 128 (163)
Q Consensus 54 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~-----~~~~ 128 (163)
..++..+|..+|.+++|.|+..++..+++.+........+..++..+|.+++|.|+.++|..++....... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 45678899999999999999999999999999888899999999999999999999999999998765432 3458
Q ss_pred HHHHhhhhcCCCCCccchHHHHHHhhccCC
Q 031226 129 CVAMIKPVDADGDGNVNFEEFRSMMTTSLK 158 (163)
Q Consensus 129 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 158 (163)
+...|+.+|.+++|.|+..|+..+|.....
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 999999999999999999999999987654
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-13 Score=95.57 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=110.8
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-Cch----
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMG-SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG-AAG---- 89 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~---- 89 (163)
..+..-++.|...|.|++|.++.+||...|.--- ..+..-.+..-+.-.|++++|.|+++||+.=+..... ...
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 4466678889999999999999999999876532 2344556777788899999999999999986655432 111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHH
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSM 152 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 152 (163)
...-.+.+...|.|++|+++.+|++..+...+......++..|+...|.|++|++|++|.+.-
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 123456788889999999999999999887777778899999999999999999999998753
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-12 Score=93.36 Aligned_cols=138 Identities=21% Similarity=0.342 Sum_probs=109.7
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC-------
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKS-MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGA------- 87 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~------- 87 (163)
.-..++...|+++|+...|+|+...+..++.. ++.+++...+..-+ ...+.+|.|.|......+..-...
T Consensus 461 s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 461 SHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred hhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHH
Confidence 55678899999999999999999999999988 46677665554432 334556788888877665432200
Q ss_pred -----chHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 88 -----AGEAELREAFDLYDQDKNGLISAEELNLVLNRL----GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 88 -----~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
.....+..+|+.+|.|++|.|+.+||.++++-+ +..+++.++..+.+.+|.|+||+|++.||+..++=
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 012358889999999999999999999988765 56789999999999999999999999999998863
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=4.3e-13 Score=87.95 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHH
Q 031226 18 REEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAF 97 (163)
Q Consensus 18 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 97 (163)
+..|+.+|..+|.|++|.|+..||+.+|..+|..++.+..+.|++.+|..+.|.|.|++|+.++.. ...+.++|
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~------L~~lt~~F 196 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV------LQRLTEAF 196 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH------HHHHHHHH
Confidence 444455555555555555555555555555555555555555555554444445555555555444 33444455
Q ss_pred HHhcCCCCCc
Q 031226 98 DLYDQDKNGL 107 (163)
Q Consensus 98 ~~~d~~~~g~ 107 (163)
+.+|++..|.
T Consensus 197 r~~D~~q~G~ 206 (221)
T KOG0037|consen 197 RRRDTAQQGS 206 (221)
T ss_pred HHhcccccee
Confidence 5555544444
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=82.91 Aligned_cols=103 Identities=28% Similarity=0.484 Sum_probs=94.6
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMG-SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELR 94 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 94 (163)
.+...+.++|..+|. ++|.|+..+|..+|.... ...+.+++...|+.+|.+++|+|+..++...+..+......+.+.
T Consensus 53 ~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~ 131 (160)
T COG5126 53 PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVE 131 (160)
T ss_pred CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHH
Confidence 667888999999998 999999999999998854 566799999999999999999999999999999998888899999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 95 EAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
.+++.+|.+++|.|++++|.+.+..
T Consensus 132 ~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 132 KLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999999987754
No 19
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=5.1e-13 Score=87.61 Aligned_cols=104 Identities=26% Similarity=0.360 Sum_probs=91.6
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC----------
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS---------- 85 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~---------- 85 (163)
......+.+|+.+|.+++|.|+..||..++..+.....++.+.-.|+.+|.+++|+|+++|++.++....
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~ 140 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPE 140 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCc
Confidence 5667788999999999999999999999999988888888888899999999999999999999876532
Q ss_pred -CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 86 -GAAGEAELREAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 86 -~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
.....+....+|..+|.|+||.||.+||...+++
T Consensus 141 ~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 141 DEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 1224677899999999999999999999988865
No 20
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=1.9e-12 Score=83.61 Aligned_cols=103 Identities=26% Similarity=0.491 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHH
Q 031226 17 SREEMQKIFNQFDANKDGKISLTELATVLKSM-GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELRE 95 (163)
Q Consensus 17 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 95 (163)
....+..+|..+|.+++|.|+..+|..++... ........+..+|..+|.+++|.|+..+|..++...........+..
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~ 130 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQE 130 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 34568899999999999999999999987653 34456788999999999999999999999999988766666788999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
+|..+|.+++|.|+.++|..++..
T Consensus 131 ~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 131 MIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999998865
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.48 E-value=1.9e-13 Score=79.27 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 90 EAELREAFDLYDQ-DKNGLISAEELNLVLNR-LGIKCSV-DGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 90 ~~~~~~~f~~~d~-~~~g~i~~~e~~~~~~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
...+..+|+.||. +++|.|+..||+.+++. ++..+++ +++..+++.+|.|++|.|+|+||+.++..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4568899999999 99999999999999999 8877888 99999999999999999999999999875
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=2.3e-13 Score=75.13 Aligned_cols=62 Identities=40% Similarity=0.687 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHhhhhcCCCCCccchHHHHHHh
Q 031226 92 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVD----GCVAMIKPVDADGDGNVNFEEFRSMM 153 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~l 153 (163)
.++.+|..+|.+++|.|+.+||..++...+...+.. .++.+|..+|.+++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999999999999999999999998665544 45556999999999999999999875
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=9.4e-13 Score=76.34 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=64.0
Q ss_pred HhHHHHHHHHHhhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 16 VSREEMQKIFNQFDA-NKDGKISLTELATVLKS-MGSSYKE-EELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~-~~~g~i~~~ef~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
..+..+..+|+.||+ +++|+|+..||+.++.. ++..++. .+++.+++.+|.+++|.|+|+||+.++..+.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 457889999999999 99999999999999999 8877777 8999999999999999999999999887653
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.44 E-value=5e-12 Score=80.73 Aligned_cols=102 Identities=29% Similarity=0.367 Sum_probs=86.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHh
Q 031226 55 EELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLG-IKCSVDGCVAMI 133 (163)
Q Consensus 55 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~-~~~~~~~~~~~~ 133 (163)
..+...|..+|.+++|.|++.+|..++.........+.+..+|..+|.+++|.|++++|..++.... .....+.+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 3466788899999999999999999988766555567899999999999999999999999887652 334556788999
Q ss_pred hhhcCCCCCccchHHHHHHhhcc
Q 031226 134 KPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 134 ~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
..+|.+++|.|+.++|..++...
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999999999988653
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=1.1e-12 Score=72.47 Aligned_cols=62 Identities=35% Similarity=0.619 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 20 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKE----EELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 20 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~----~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
+++.+|..+|.+++|+|+..||..++..++...+. ..+..+|+.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999998876544 445556888999999999999998764
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.40 E-value=2.5e-12 Score=74.66 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 90 EAELREAFDLYD-QDKNG-LISAEELNLVLNR-----LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 90 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
...+..+|+.|| .+++| .|+.+||+.+++. .+...+++++..+++.+|.|++|.|+|++|+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456889999998 79999 5999999999999 788889999999999999999999999999998865
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.38 E-value=6.5e-12 Score=72.91 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFD-ANKDG-KISLTELATVLKS-----MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
..+..+..+|+.+| .+++| .|+..+|+.+|+. ++...++.++..+++.+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45788999999998 79999 5999999999999 8888999999999999999999999999999887664
No 28
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.36 E-value=6.5e-12 Score=77.35 Aligned_cols=137 Identities=23% Similarity=0.374 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHhhcCCC-----CC------cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFDANK-----DG------KISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~-----~g------~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.++-.+...|..+.++- .| .++.+.+.. |..+.-++-. +++...+..+|.|.++|++|+.+++..
T Consensus 25 KdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELkenpfk---~ri~e~FSeDG~GnlsfddFlDmfSV~ 100 (189)
T KOG0038|consen 25 KDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKENPFK---RRICEVFSEDGRGNLSFDDFLDMFSVF 100 (189)
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcChHH---HHHHHHhccCCCCcccHHHHHHHHHHH
Confidence 45555666666665541 11 344444333 3334333333 356667778999999999999999887
Q ss_pred C-CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHH----HHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 85 S-GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLG-IKCSVDGCV----AMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 85 ~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~-~~~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
. .....-++..+|+.||-|+++.|...++...+..+- ..++++++. .++...|.+++|++++.||..++.+.
T Consensus 101 sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 101 SEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6 333444678899999999999999999999998864 568888865 45677799999999999999998764
No 29
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.33 E-value=3.5e-11 Score=86.33 Aligned_cols=140 Identities=22% Similarity=0.336 Sum_probs=109.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCC---HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYK---EEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAE 92 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~---~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 92 (163)
.+.+-++--|..+|+..+|.|+..+|..++-......+ ...+.++-+.++.++.| |+++||..++..+.+-..-+.
T Consensus 315 Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~Ff~Fl~~l~dfd~ 393 (489)
T KOG2643|consen 315 LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKAFFRFLNNLNDFDI 393 (489)
T ss_pred HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC-cCHHHHHHHHHHHhhhhHHHH
Confidence 44455566799999999999999999998877543222 22456677777666544 999999999988776555455
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhccCCCC
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKPG 160 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 160 (163)
+..+|.. ..+.|+..+|+++... .|..+++..++.+|..||.|+||.|+++||+.+|.++.+++
T Consensus 394 Al~fy~~----Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrg 458 (489)
T KOG2643|consen 394 ALRFYHM----AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHRG 458 (489)
T ss_pred HHHHHHH----cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhcc
Confidence 5555543 4578999999988876 47899998999999999999999999999999999988774
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.29 E-value=2.2e-11 Score=70.68 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQ-DK-NGLISAEELNLVLNR---LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
...+-.+|+.|+. ++ +|.|+.+||+.+++. .|..++++++..+++.+|.+++|.|+|+||+.++.+-
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3457789999998 66 899999999999974 5888999999999999999999999999999998764
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.29 E-value=5.1e-11 Score=69.15 Aligned_cols=69 Identities=25% Similarity=0.469 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh---cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFDA-NK-DGKISLTELATVLKS---MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~-~~-~g~i~~~ef~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
..+..+-.+|++|+. ++ +|+|+..||+.++.. ++...+.+++..+++.+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 567788899999997 66 899999999999973 6888999999999999999999999999999887764
No 32
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=3.7e-11 Score=71.21 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=63.1
Q ss_pred hhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 13 QLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 13 ~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.++ .++..+..+|..+|.+++|.|+..++..+++.++ .+..++..++..+|.+++|.|++++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 456 7889999999999999999999999999999865 678899999999999999999999999987763
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.27 E-value=3.4e-11 Score=71.07 Aligned_cols=66 Identities=29% Similarity=0.426 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 90 EAELREAFDLYDQ-DK-NGLISAEELNLVLNR-----LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 90 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
...+..+|..+|. ++ +|.|+.+|+..+++. ++...+.+++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4568899999997 87 699999999999986 456778999999999999999999999999988864
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=4.2e-11 Score=70.42 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYD-QDKNG-LISAEELNLVLNRL-----GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
...+..+|+.|| .+++| .|+..||+.++... ....++.++..++..+|.|++|.|+|+||+.++.+-
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456788899999 67998 59999999999763 334477899999999999999999999999988753
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.26 E-value=4.4e-11 Score=70.32 Aligned_cols=67 Identities=25% Similarity=0.444 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYD-QDKNG-LISAEELNLVLNR-LG----IKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~~~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
.+.+.++|+.|| .+++| .|+..|++.+++. .+ ...+++++..++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 5999999999986 43 34588999999999999999999999999988753
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.26 E-value=1.7e-11 Score=64.81 Aligned_cols=52 Identities=42% Similarity=0.705 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 104 KNGLISAEELNLVLNRLGIK-CSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 104 ~~g~i~~~e~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
++|.|+.++|..++..+|.. ++++++..+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999999864
No 37
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.26 E-value=1.3e-10 Score=76.28 Aligned_cols=100 Identities=28% Similarity=0.447 Sum_probs=85.4
Q ss_pred HHHHHHhhcCCCCCc-ccHHHHHHHHHhcCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCc-------hHH
Q 031226 21 MQKIFNQFDANKDGK-ISLTELATVLKSMGSSYKEE-ELVRVMEDLDTDKDGFISLSEFETICRTSSGAA-------GEA 91 (163)
Q Consensus 21 ~~~~f~~~d~~~~g~-i~~~ef~~~l~~~~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-------~~~ 91 (163)
..+++..++.+++|. |+.++|...+.......+.. .+.-.|+.+|.+++|.|+.+++..++....... ..+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 367789999998888 99999999999987766655 899999999999999999999999988866421 234
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 92 ELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
.+...|..+|.++||.|+.+||+.++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 57788999999999999999999988653
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.24 E-value=1.3e-10 Score=68.38 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 16 VSREEMQKIFNQFD-ANKDG-KISLTELATVLKS-M----GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 16 ~~~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
..+..+.++|+.|| .+++| .|+..||+.++.. + ....+..++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 56788899999999 78998 5999999999976 2 3345778999999999999999999999999987753
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=1e-10 Score=68.71 Aligned_cols=70 Identities=21% Similarity=0.447 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-cC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 16 VSREEMQKIFNQFD-ANKDG-KISLTELATVLKS-MG----SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 16 ~~~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
..+..+.++|..+| .+++| .|+..+|..+|+. ++ ..++..+++.++..+|.+++|.|+|++|+.++..+.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 44678999999997 99999 5999999999985 43 356889999999999999999999999999887643
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=99.24 E-value=1.7e-10 Score=88.32 Aligned_cols=120 Identities=19% Similarity=0.312 Sum_probs=91.6
Q ss_pred CCcccHHHHHHHHHh-c-C-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCchHHH---HHHHHHHhcCCCC
Q 031226 33 DGKISLTELATVLKS-M-G-SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GAAGEAE---LREAFDLYDQDKN 105 (163)
Q Consensus 33 ~g~i~~~ef~~~l~~-~-~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~---~~~~f~~~d~~~~ 105 (163)
...++..++...... + . .....+++.+.|..+|++++|.+ +..++..+. .....+. +..+|..+|.+++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 345666666655433 1 1 11233567788999999999987 444444444 1222333 8999999999999
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 106 GLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 106 g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
|.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||..++...
T Consensus 194 G~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 194 GQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999988877889999999999999999999999999998874
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=4e-10 Score=70.61 Aligned_cols=104 Identities=24% Similarity=0.439 Sum_probs=93.9
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKS-MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELR 94 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 94 (163)
....++.++...+|+++.|.|+..+|...+.. ++..-+.+++...|+.+|.+++|.|++.+|+.+...+......+.+.
T Consensus 66 ~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~ 145 (172)
T KOG0028|consen 66 PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELM 145 (172)
T ss_pred cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHH
Confidence 45577788889999999999999999999776 56666999999999999999999999999999999998777788999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 95 EAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
....-+|.+++|-|+.+||..+++.
T Consensus 146 eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 146 EMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999988865
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.22 E-value=1.3e-10 Score=68.57 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 17 SREEMQKIFNQFDA-NK-DGKISLTELATVLKS-----MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 17 ~~~~~~~~f~~~d~-~~-~g~i~~~ef~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
....+..+|..+|. ++ +|.|+..|+..+++. ++..++..++..++..+|.+++|.|++++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46778999999997 87 699999999999986 4667899999999999999999999999999888763
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=7.7e-11 Score=65.08 Aligned_cols=60 Identities=30% Similarity=0.439 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
+.+|..+|.+++|.|+.+|+..++...+. +.+++..++..+|.+++|.|+++||+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999988764 8888999999999999999999999988753
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.19 E-value=1.8e-10 Score=67.19 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=61.1
Q ss_pred HhHHHHHHHHHhhcC--CCCCcccHHHHHHHHHh-cCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFDA--NKDGKISLTELATVLKS-MGSS----YKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~--~~~g~i~~~ef~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.++..++.+|..+|. +++|.|+..+|..+++. ++.. .+..++..++..+|.+++|.|++++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 567889999999999 89999999999999986 4433 458999999999999999999999999988764
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=1.5e-10 Score=63.93 Aligned_cols=61 Identities=31% Similarity=0.409 Sum_probs=54.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 22 QKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 22 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
+.+|..+|.+++|.|+..|+..++..++. +...+..++..+|.+++|.|++++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998764 78889999999999999999999999887653
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=1.7e-10 Score=60.94 Aligned_cols=52 Identities=40% Similarity=0.698 Sum_probs=47.9
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 32 KDGKISLTELATVLKSMGSS-YKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
.+|.|+.++|+.++..++.. ++.+++..+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999998764
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=2.2e-10 Score=67.91 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 89 GEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 89 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
....+..+|..+|.+++|.|+.+++..+++..+ ++.+++..++..+|.+++|.|+++||+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 356788999999999999999999999998865 68889999999999999999999999987764
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=2e-10 Score=67.00 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQ--DKNGLISAEELNLVLNR-LGIK----CSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~--~~~g~i~~~e~~~~~~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
.+.+..+|..+|. +++|.|+.++|..+++. .+.. .+.+++..++..+|.+++|.|++++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4568889999999 89999999999999976 4433 458999999999999999999999999988753
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=3e-10 Score=61.35 Aligned_cols=61 Identities=51% Similarity=0.807 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHh
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 153 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 153 (163)
+..+|..+|.+++|.|+.+++..++...+...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999988899999999999999999999999998876
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.16 E-value=3e-10 Score=69.09 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 89 GEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 89 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
....+..+|..+|.|++|.|+.+|+..+. .......+..++..+|.|++|.||++||+.++.+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 35678999999999999999999999876 22346778899999999999999999999999443
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=3e-10 Score=66.04 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=56.5
Q ss_pred HHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDL-YDQDKNG-LISAEELNLVLNRL-----GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~-~d~~~~g-~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
...+..+|+. +|.+++| .|+.+||+.++... +...++.++..+++.+|.|++|.|+|+||+.++..-
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999 6777865 99999999999886 334567899999999999999999999999988653
No 52
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.14 E-value=1.4e-09 Score=88.03 Aligned_cols=137 Identities=19% Similarity=0.425 Sum_probs=108.8
Q ss_pred hhhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCC--H-----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 10 NRKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYK--E-----EELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 10 ~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~--~-----~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
.....| .+..++..+|..||.+.+|.++..+|..+|+.+|++++ + .+++.++..+|++.+|+|++.+|..++
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 334566 88899999999999999999999999999999998763 3 379999999999999999999999998
Q ss_pred HhcC--CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh----cC----CCCCccchHHHHH
Q 031226 82 RTSS--GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPV----DA----DGDGNVNFEEFRS 151 (163)
Q Consensus 82 ~~~~--~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~----d~----~~~g~i~~~ef~~ 151 (163)
.... +....+.+..+|+.+|. +..+|+.+++..-| +.+++.-.+..+ ++ ...+.+.|.+|.+
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~ 2394 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVN 2394 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHH
Confidence 8754 44556689999999998 78889999875544 555555444444 22 2234588889887
Q ss_pred Hhh
Q 031226 152 MMT 154 (163)
Q Consensus 152 ~l~ 154 (163)
.+.
T Consensus 2395 sl~ 2397 (2399)
T KOG0040|consen 2395 SLF 2397 (2399)
T ss_pred HHh
Confidence 764
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.13 E-value=6.8e-10 Score=59.93 Aligned_cols=61 Identities=38% Similarity=0.653 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 21 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 21 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
+..+|..+|.+++|.|+..+|..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999989999999999999999999999999998764
No 54
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.11 E-value=2.6e-09 Score=76.47 Aligned_cols=126 Identities=22% Similarity=0.298 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHH
Q 031226 17 SREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREA 96 (163)
Q Consensus 17 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 96 (163)
.-.....+|..+|.|.+|.++.+||...+.. .+.++.++|...|.+++|.|+..|....+......-..+.+..+
T Consensus 49 ~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~ 123 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKF 123 (463)
T ss_pred chHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHH
Confidence 4456778899999999999999999999975 77888999999999999999999999999999877778899999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh------cCCCCCccchHHHHHH
Q 031226 97 FDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPV------DADGDGNVNFEEFRSM 152 (163)
Q Consensus 97 f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~g~i~~~ef~~~ 152 (163)
|+..|+++++.|+.+|+++++.-. +++.+..++..+ |...+..|. ++|...
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~ll~----p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~ 180 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLLLY----PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKL 180 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhhcC----ChhHHHHHHHhhhhheEEEccccccCC-cchHHH
Confidence 999999999999999999988654 255555553333 555565555 555443
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.11 E-value=1.3e-09 Score=63.44 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQ-FDANKDG-KISLTELATVLKSM-----GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~-~d~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
..+..|..+|+. +|.+++| .|+..||..++..- +...+..+++.++..+|.+++|.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567889999999 6677876 99999999999885 335567899999999999999999999999887764
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=99.10 E-value=6.4e-10 Score=59.94 Aligned_cols=62 Identities=29% Similarity=0.560 Sum_probs=57.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHHhc
Q 031226 23 KIFNQFDANKDGKISLTELATVLKSMGS-SYKEEELVRVMEDLDTDKD-GFISLSEFETICRTS 84 (163)
Q Consensus 23 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~ef~~~~~~~ 84 (163)
.+|..+|.++.|.+...++..+|+.++. .+++.+++.+...+|+++. |.|+++.|+..++.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3699999999999999999999999998 8999999999999999998 999999999988753
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.08 E-value=1.2e-09 Score=73.34 Aligned_cols=139 Identities=25% Similarity=0.288 Sum_probs=96.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchH--
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMG---SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGE-- 90 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-- 90 (163)
...+.+..+|.+.|.|.+|+|+..|+...+..-. ..-..++.+.-|+..|++++|.|+|+||...+......+..
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 4578899999999999999999999999876621 12234455668888999999999999998765432211110
Q ss_pred ----------------------------------------------------------HHHHHHHHHhcCCCCCcccHHH
Q 031226 91 ----------------------------------------------------------AELREAFDLYDQDKNGLISAEE 112 (163)
Q Consensus 91 ----------------------------------------------------------~~~~~~f~~~d~~~~g~i~~~e 112 (163)
..++.+-..+|++++..++..+
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 1155566677888888888888
Q ss_pred HHHHHHH-----hCCCCCH----HHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 113 LNLVLNR-----LGIKCSV----DGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 113 ~~~~~~~-----~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
|....-. .+..+.+ ....++-..+|.|.+|.++++|+..++.
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 7553321 1222222 2234566667889999999999888754
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.03 E-value=2.3e-09 Score=65.25 Aligned_cols=62 Identities=37% Similarity=0.482 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
.....+...|..+|.|++|.|+.+|+..+. ....+..+..++..+|.+++|.||++||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 344555566666666666666666666544 22334555556666666666666666666655
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.99 E-value=2.4e-09 Score=62.29 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHhhhhcCCCCCccchHHHHHHhhccC
Q 031226 90 EAELREAFDLYDQD--KNGLISAEELNLVLN-RLGIKCS----VDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 157 (163)
Q Consensus 90 ~~~~~~~f~~~d~~--~~g~i~~~e~~~~~~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 157 (163)
-..+...|+.|+.. ++|.|+.+||..++. ..+..++ ++++..+|..+|.+++|.|+|++|+.++....
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 34577889999866 478999999999997 4555555 89999999999999999999999999987653
No 60
>PF14658 EF-hand_9: EF-hand domain
Probab=98.98 E-value=2.9e-09 Score=57.43 Aligned_cols=61 Identities=28% Similarity=0.483 Sum_probs=56.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHhhhhcCCCC-CccchHHHHHHhhc
Q 031226 95 EAFDLYDQDKNGLISAEELNLVLNRLGI-KCSVDGCVAMIKPVDADGD-GNVNFEEFRSMMTT 155 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 155 (163)
.+|..||.++.|.|...++..++++.+. ..++.+++.+...+|+++. |.|+++.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999987 7889999999999999998 99999999999875
No 61
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.94 E-value=1.6e-08 Score=73.53 Aligned_cols=128 Identities=16% Similarity=0.299 Sum_probs=103.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHHhcCCCchHHHHHHH
Q 031226 21 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMED----LDTDKDGFISLSEFETICRTSSGAAGEAELREA 96 (163)
Q Consensus 21 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~----~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 96 (163)
+...|-.+|.+++|.|+.+++...-.. .++.--++++|+. .-...+|+++|++|+.++.....+....-+...
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 344488899999999999999987543 4567888999993 334567899999999999998877778889999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHh-------C-CCCC-HHHHHHHhhhhcCCCCCccchHHHHH
Q 031226 97 FDLYDQDKNGLISAEELNLVLNRL-------G-IKCS-VDGCVAMIKPVDADGDGNVNFEEFRS 151 (163)
Q Consensus 97 f~~~d~~~~g~i~~~e~~~~~~~~-------~-~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~ 151 (163)
|+.+|-+++|.|+..|++-+.... + ..++ +..+.+++..+.+...++|++++|..
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999999999998777542 2 2333 34456788888888899999999987
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.93 E-value=9.1e-09 Score=59.85 Aligned_cols=69 Identities=22% Similarity=0.437 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHhhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFDAN--KDGKISLTELATVLK-SMGSSYK----EEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~--~~g~i~~~ef~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
..+..+-.+|+.|+.. ++|.|+..||..++. .++..++ ..+++.++..+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567788899999865 479999999999997 4555555 8999999999999999999999999988764
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.7e-08 Score=71.85 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=98.1
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc------CC--------CCC-HHHHH--HHHHhhCCCCCCcccHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSM------GS--------SYK-EEELV--RVMEDLDTDKDGFISLSEFE 78 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~------~~--------~~~-~~~~~--~l~~~~d~~~~g~i~~~ef~ 78 (163)
...+.++-+|..+|.|+||-|+.+||...+.-. +. ..+ ..+++ -+...+..++++.+++++|+
T Consensus 230 ~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~ 309 (489)
T KOG2643|consen 230 IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFL 309 (489)
T ss_pred cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHH
Confidence 455777888999999999999999999987442 11 000 11111 23344688999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC-CCCCH--HHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 79 TICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLG-IKCSV--DGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~-~~~~~--~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
.++..+. .+.+..-|..+|....|.|+..+|..++-... .+... -...++-+.++.+ +..|+++||.+++.
T Consensus 310 ~F~e~Lq----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 310 KFQENLQ----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHHHH----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 9998865 67788889999999999999999999887654 22222 2345666667444 66799999988864
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.83 E-value=7.1e-08 Score=62.90 Aligned_cols=104 Identities=25% Similarity=0.419 Sum_probs=81.3
Q ss_pred hH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCc-hH-
Q 031226 14 LI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA-GE- 90 (163)
Q Consensus 14 ~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~- 90 (163)
++ .++..+..+|..||.+.||+|+..|++.+|.+||-+-+.--+..++...|.+.+|+|+|.+|+-++....... ..
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~d 172 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQED 172 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccc
Confidence 44 7788999999999999999999999999999999999999999999999999999999999999988754211 11
Q ss_pred HHHHHH--HHHhcCCCCCcccHHHHHHHH
Q 031226 91 AELREA--FDLYDQDKNGLISAEELNLVL 117 (163)
Q Consensus 91 ~~~~~~--f~~~d~~~~g~i~~~e~~~~~ 117 (163)
..+..+ ....|..+-|......|.++-
T Consensus 173 s~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 173 SGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred hHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 112222 223577777777777765544
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.77 E-value=1.4e-07 Score=54.45 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKS-----MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
..+..+-.+|++|. .+.+.|+..||+.++.. +........++.++..+|.+++|.|+|.||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34677888999996 55679999999999966 34445688899999999999999999999999987753
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.73 E-value=1.5e-07 Score=54.38 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRL-----GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
...+..+|+.|. .+.+.+++.||+.++... ...-++..++.+++..|.|+||.|+|+||+.++..
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 345677888888 445789999999999763 23446788999999999999999999999998865
No 67
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.70 E-value=1.3e-07 Score=68.94 Aligned_cols=138 Identities=19% Similarity=0.289 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHH-----Hhc---------CCCCCHHHHHHH---HHhhCCCCCCcccHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVL-----KSM---------GSSYKEEELVRV---MEDLDTDKDGFISLSEFE 78 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l-----~~~---------~~~~~~~~~~~l---~~~~d~~~~g~i~~~ef~ 78 (163)
.....++++|-.+++.++|.|+..++.... ..+ ....+.+-...+ |..+|.+++|.|+.++..
T Consensus 222 Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ 301 (493)
T KOG2562|consen 222 YAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLK 301 (493)
T ss_pred HHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHH
Confidence 345567889999999999999999887632 111 111222333344 677899999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHH----HhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 79 TICRTSSGAAGEAELREAFD----LYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
.+...... .-.+.++|. .+-...+|.+++.+|..++-+...+-+++-++.+|+.+|.+++|.|+..|...++.
T Consensus 302 ry~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 302 RYGDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred HHhccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 88766554 556788888 33445689999999999999988777888999999999999999999999887776
Q ss_pred cc
Q 031226 155 TS 156 (163)
Q Consensus 155 ~~ 156 (163)
..
T Consensus 379 eq 380 (493)
T KOG2562|consen 379 EQ 380 (493)
T ss_pred HH
Confidence 54
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=4.7e-08 Score=44.41 Aligned_cols=28 Identities=36% Similarity=0.755 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031226 20 EMQKIFNQFDANKDGKISLTELATVLKS 47 (163)
Q Consensus 20 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 47 (163)
+++.+|+.+|.|++|+|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3566777777777777777777777664
No 69
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.66 E-value=1.4e-06 Score=67.14 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=119.2
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELRE 95 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 95 (163)
.....+..+|+..|.+.+|.++..+...++..++..+....+..+|+..+..+.+.+.+.+|..+........ .+..
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHH
Confidence 6677889999999999999999999999999999999999999999999888999999999999988877644 6777
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHhhhhcC----CCCCccchHHHHHHhhccCCCC
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNRLG--IKCSVDGCVAMIKPVDA----DGDGNVNFEEFRSMMTTSLKPG 160 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~~~--~~~~~~~~~~~~~~~d~----~~~g~i~~~ef~~~l~~~~~~~ 160 (163)
+|..+-.+ .+.++.+++..++...+ ...+.+.++.++..+.. ...+.++++.|..+|...-.+.
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 88877655 89999999999998874 34567777777766633 2456699999999999876554
No 70
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.63 E-value=2.5e-07 Score=60.41 Aligned_cols=66 Identities=33% Similarity=0.568 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
+.+..+|+.||.+.||+|+..|++.+|..+|-+.|-=-+..+++.+|.|.+|+|++.||+-.+...
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 456667777777777777777777777777765555556677777777777777777777666543
No 71
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=1.9e-06 Score=54.09 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 031226 54 EEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL-GIKCSVDGCVAM 132 (163)
Q Consensus 54 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~ 132 (163)
-+++.+.|..+|++++|.|+.++...++..+......+.+...+. ...|.|++.-|..++..- ...-+++.+...
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 356777888999999999999999999999987777777877776 567999999888877653 222245667889
Q ss_pred hhhhcCCCCCccchHHHHHHhhcc
Q 031226 133 IKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 133 ~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
|..||.++.|.|..+.+..+|...
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHHh
Confidence 999999999999999998888764
No 72
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.61 E-value=9.9e-07 Score=54.34 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=88.7
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHhC---CCCCHH
Q 031226 53 KEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQD--KNGLISAEELNLVLNRLG---IKCSVD 127 (163)
Q Consensus 53 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~~~~~~---~~~~~~ 127 (163)
...++..+|..||..++|.|+..+--.+++.+...+....+......++.+ +-..|++++|.-+++.++ ...+-+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 347888999999999999999999999999998777777888888887766 457899999999998875 456788
Q ss_pred HHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 128 GCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 128 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
++-+-++.||++++|.|...|+...|.+
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 8889999999999999999999988765
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.58 E-value=1.1e-07 Score=43.15 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=12.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHH
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLN 118 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~ 118 (163)
+.+|+.+|.|++|.|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 4445555555555555555554443
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.56 E-value=1.5e-07 Score=65.75 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=95.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCchHHHHHHHHHHhcCCCCCcc
Q 031226 30 ANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GAAGEAELREAFDLYDQDKNGLI 108 (163)
Q Consensus 30 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i 108 (163)
..+.+.|...+|...++. +....+..+|..||.+++|.+++.+.+..+..+. .....+.++-+|+.|+.+.||.+
T Consensus 238 ~~kg~~igi~efa~~l~v----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 238 EAKGPDIGIVEFAVNLRV----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred hccCCCcceeEeeeeeec----chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccccccccc
Confidence 345566666666665442 3346677899999999999999999988887776 45567889999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 109 SAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 109 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
+..+|.-+++.... +.+=.+.-+|...+...+|+|++++|.+++..+
T Consensus 314 ge~~ls~ilq~~lg-v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 314 GEHILSLILQVVLG-VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred chHHHHHHHHHhcC-cceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 99998888876521 223335568999999999999999999998754
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.51 E-value=8.4e-07 Score=52.98 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=58.0
Q ss_pred hhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 13 QLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 13 ~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.++ ++...+..+|..+++ ++|.|+-.+...++... .++.+.+..|+...|.+++|.++++||+.+++..
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 456 788999999999985 68999999999988764 4577999999999999999999999999887663
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.46 E-value=3.4e-06 Score=62.30 Aligned_cols=101 Identities=21% Similarity=0.379 Sum_probs=74.7
Q ss_pred HHHHHHH---HHhhcCCCCCcccHHHHHHHHHhc-CCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHH
Q 031226 18 REEMQKI---FNQFDANKDGKISLTELATVLKSM-GSS-YKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAE 92 (163)
Q Consensus 18 ~~~~~~~---f~~~d~~~~g~i~~~ef~~~l~~~-~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 92 (163)
..+++.+ |...+.++.-+++.++|......+ +.+ ...+.+.-+-...|..++|.|+|+||+.+=..+..+ ...
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p--Dal 109 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP--DAL 109 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc--hHH
Confidence 3445555 455567888899999998865543 333 334444445555688899999999999886666554 346
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
...+|..||..++|.++.+++.+++...
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 7889999999999999999999999764
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.46 E-value=1.2e-06 Score=44.71 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 35 KISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.++..|+..+|+.++..+++.-+..+|..+|.+++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36788888888888888888888888888888888888888888887653
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.44 E-value=4.2e-07 Score=42.03 Aligned_cols=30 Identities=37% Similarity=0.752 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-hcC
Q 031226 20 EMQKIFNQFDANKDGKISLTELATVLK-SMG 49 (163)
Q Consensus 20 ~~~~~f~~~d~~~~g~i~~~ef~~~l~-~~~ 49 (163)
+++.+|..+|.+++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467889999999999999999999988 454
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.42 E-value=1e-06 Score=44.93 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
++..|++.+++.+++.++++.+..+|+.+|.+++|.+..+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 56778888888888888888888888888888888888888887764
No 80
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.37 E-value=2.8e-06 Score=61.94 Aligned_cols=67 Identities=33% Similarity=0.586 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 17 SREEMQKIFNQFDANKDGKISLTELATVLKSM----GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 17 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
..+.++-+|+.+|.|++|.|+.+||+.+...+ ...++...+.++.+.+|.+++|.|++.||+..+..
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 34455555555555555555555555554443 22344555555555555555555555555555544
No 81
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.37 E-value=5e-06 Score=51.73 Aligned_cols=99 Identities=17% Similarity=0.294 Sum_probs=77.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCchHH----HHHH
Q 031226 22 QKIFNQFDANKDGKISLTELATVLKSMGS-SYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GAAGEA----ELRE 95 (163)
Q Consensus 22 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~----~~~~ 95 (163)
+++...+..+|.|.++.++|..++..+.- .+..-.+...|+.+|-++++.|..++....+..+. .....+ ...+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 45667788999999999999999887543 33445667788889999999999999998887765 222233 3555
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
+....|.|++|+++..+|..++...
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6677799999999999999887653
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=9.4e-07 Score=40.84 Aligned_cols=26 Identities=50% Similarity=0.905 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLN 118 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 118 (163)
++.+|+.+|.+++|.|+.+||..+++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 56778888888888888888887776
No 83
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.28 E-value=7e-06 Score=49.02 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 88 AGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 88 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
.....+..+|...+. ++|.|+.++...++...+ ++.+.+..+|...|.+++|.++.+||+-.|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 335667788888874 578888888888887764 5678888888888888888888888876543
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.23 E-value=1.5e-05 Score=58.48 Aligned_cols=57 Identities=33% Similarity=0.471 Sum_probs=49.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 86 GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 86 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
.......+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 334466789999999999999999999842 467899999999999999999998864
No 85
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.20 E-value=1.5e-06 Score=52.80 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=46.9
Q ss_pred CCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHH
Q 031226 85 SGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSM 152 (163)
Q Consensus 85 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 152 (163)
........+...|..+|.+++|.|+..|+..+...+ ...+.-+..++..+|.|++|.|++.||..+
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 344456678889999999999999999987766543 223445788999999999999999999864
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.19 E-value=3e-06 Score=37.03 Aligned_cols=24 Identities=42% Similarity=0.797 Sum_probs=17.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHH
Q 031226 21 MQKIFNQFDANKDGKISLTELATV 44 (163)
Q Consensus 21 ~~~~f~~~d~~~~g~i~~~ef~~~ 44 (163)
|+.+|+.+|.|++|.|+..||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356677777777777777777764
No 87
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.14 E-value=3.8e-06 Score=36.67 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=10.1
Q ss_pred HHHHHhcCCCCCcccHHHHHH
Q 031226 95 EAFDLYDQDKNGLISAEELNL 115 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~ 115 (163)
.+|..+|.|++|.|+.+||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 344444444455554444444
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.14 E-value=1.8e-05 Score=58.06 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 49 GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 49 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
+.......+..+|+.+|.+++|.|+..||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4556678889999999999999999999952 4678999999999999999999988753
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.13 E-value=1.4e-06 Score=52.98 Aligned_cols=62 Identities=29% Similarity=0.372 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFET 79 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 79 (163)
.....+.-.|..+|.|++|.|+..|+..+...+ ...+.=+..+++.+|.+++|.|++.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344455555666666666666666666655433 23333455566666666666666666653
No 90
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.10 E-value=2e-05 Score=58.46 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=57.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCC------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHH
Q 031226 22 QKIFNQFDANKDGKISLTELATVLKSMGS------SYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELRE 95 (163)
Q Consensus 22 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 95 (163)
+.+|..+|+.++|.++.+++..++.+... +.+.+-+...| .....-.++|.+|..+++... .+...+
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~----~E~~~q 183 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQ----LEHAEQ 183 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHH----HHHHHH
Confidence 44555555555555555555555555321 12223333322 222233455555555555543 344677
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
+|+..|..++|.|+.=+|+..+-..-.++...-++..+-.+
T Consensus 184 afr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~v 224 (694)
T KOG0751|consen 184 AFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSV 224 (694)
T ss_pred HHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhh
Confidence 77777878888877777777776554444444444443333
No 91
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.10 E-value=3.4e-05 Score=63.90 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=73.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcC--CCc-----hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh--CCCCCH
Q 031226 56 ELVRVMEDLDTDKDGFISLSEFETICRTSS--GAA-----GEAELREAFDLYDQDKNGLISAEELNLVLNRL--GIKCSV 126 (163)
Q Consensus 56 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~--~~~-----~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~--~~~~~~ 126 (163)
++.-+|+.||.+.+|.+++.+|..++..+. -+. +...+..+....|++.+|+|+..+...+|-.- ..-++.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~ 2333 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSS 2333 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccch
Confidence 456689999999999999999999998765 222 23478899999999999999999998888653 234577
Q ss_pred HHHHHHhhhhcCCCCCccchHHH
Q 031226 127 DGCVAMIKPVDADGDGNVNFEEF 149 (163)
Q Consensus 127 ~~~~~~~~~~d~~~~g~i~~~ef 149 (163)
++|...|+..+. +...|+.++.
T Consensus 2334 ~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2334 EEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred HHHHHHHHHhhc-CCccccHHHH
Confidence 789999999987 6666766655
No 92
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.05 E-value=2.7e-05 Score=58.05 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=68.3
Q ss_pred hhhhhhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 031226 7 ADSNRKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSS---YKEEELVRVMEDLDTDKDGFISLSEFETICR 82 (163)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 82 (163)
......++| ++...+...|...| +++|+++..++..++.+.+.. ...++++.++...+.+.+|+|+|++|+..+.
T Consensus 6 ~~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 6 DPWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred chhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345667788 99999999999999 999999999999999986543 4588999999999999999999999999776
Q ss_pred hcC
Q 031226 83 TSS 85 (163)
Q Consensus 83 ~~~ 85 (163)
.+.
T Consensus 85 ~l~ 87 (627)
T KOG0046|consen 85 NLK 87 (627)
T ss_pred hhh
Confidence 654
No 93
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00013 Score=57.03 Aligned_cols=136 Identities=21% Similarity=0.329 Sum_probs=101.7
Q ss_pred hH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC------
Q 031226 14 LI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG------ 86 (163)
Q Consensus 14 ~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~------ 86 (163)
++ .+...-...|..+ ..+.|+|+-..-+.++-..+ +....+..|+...|.+++|+++..||.-.+..+..
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 44 5566666667777 56778888888887775544 45567777888888888889998888755431100
Q ss_pred --------------------------------------------------------------------------------
Q 031226 87 -------------------------------------------------------------------------------- 86 (163)
Q Consensus 87 -------------------------------------------------------------------------------- 86 (163)
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ------------------------CchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCC
Q 031226 87 ------------------------AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDG 142 (163)
Q Consensus 87 ------------------------~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g 142 (163)
....-.++.+|+.+|....|+++..+-+.++...+ +....+..++...|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 00001278899999999999999999988886654 5677889999999999999
Q ss_pred ccchHHHHHHhh
Q 031226 143 NVNFEEFRSMMT 154 (163)
Q Consensus 143 ~i~~~ef~~~l~ 154 (163)
+++-+||+-.|.
T Consensus 245 kL~~dEfilam~ 256 (1118)
T KOG1029|consen 245 KLSADEFILAMH 256 (1118)
T ss_pred cccHHHHHHHHH
Confidence 999999986553
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.92 E-value=2.9e-05 Score=44.54 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHhhhhcCC----CCCccchHHHHHHhhccCCCC
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDAD----GDGNVNFEEFRSMMTTSLKPG 160 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~~~~~ 160 (163)
+..+|..+.. +.+.|+.++|..+++.... .++.+.+..++..+..+ ..+.+++++|..+|.......
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~ 74 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSI 74 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCC
Confidence 5778889965 7899999999999987643 46889999999988654 478999999999998876443
No 95
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.57 E-value=0.00039 Score=49.17 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=82.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHH
Q 031226 19 EEMQKIFNQFDANKDGKISLTELATVLKSM-GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAF 97 (163)
Q Consensus 19 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 97 (163)
..++..|..+|.+++|.++..+....+..+ +...+..-++.-|+.++...+|.+.-.+|..+++...... .-.+.-.|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~-~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE-VLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc-eeeccccc
Confidence 667889999999999999999988777765 4566788899999999999999999888877777654322 12456689
Q ss_pred HHhcCCCCCcccHHHHHHHHHHh
Q 031226 98 DLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 98 ~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
...++..+|+|+.++|+.++...
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhC
Confidence 99999999999999999988654
No 96
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00039 Score=41.68 Aligned_cols=59 Identities=27% Similarity=0.408 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHh------C---CC-CCHHHHH----HHhhhhcCCCCCccchHHHHHH
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLNRL------G---IK-CSVDGCV----AMIKPVDADGDGNVNFEEFRSM 152 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~~~------~---~~-~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~ 152 (163)
-..|+..|.|+++.|+.-|+..++..+ | .+ .++.++. .+++.-|.|++|.|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 346888899999999999998888754 2 22 3555554 4555668899999999999874
No 97
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.53 E-value=0.0012 Score=50.44 Aligned_cols=140 Identities=21% Similarity=0.275 Sum_probs=90.8
Q ss_pred hhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHhhCC---CC--CCcccHHHHHHHHHh
Q 031226 11 RKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKS-MGSSYKEEELVRVMEDLDT---DK--DGFISLSEFETICRT 83 (163)
Q Consensus 11 ~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~l~~~~d~---~~--~g~i~~~ef~~~~~~ 83 (163)
.+.+. .-++.|.++|...|.|.+|.++-.|+...-.. ++.++...++..+....+. ++ +..++..-|+-+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 34455 77889999999999999999999888776554 5667777766665555432 11 234555556544321
Q ss_pred cC------------------------------------------CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC
Q 031226 84 SS------------------------------------------GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLG 121 (163)
Q Consensus 84 ~~------------------------------------------~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~ 121 (163)
.. +....+-+..+|..||.|+||.++..|+..++..++
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 11 111134488899999999999999999999998875
Q ss_pred CC-CCH-HHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 122 IK-CSV-DGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 122 ~~-~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
.. ++. .+... --.+..|.+++..|+..+.
T Consensus 346 ~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 346 GSPWTSSPYKDS----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCCccccc----ceecccceeehhhHHHHHH
Confidence 32 211 00000 0123678888888876543
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.35 E-value=0.00035 Score=30.63 Aligned_cols=27 Identities=37% Similarity=0.728 Sum_probs=17.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031226 21 MQKIFNQFDANKDGKISLTELATVLKS 47 (163)
Q Consensus 21 ~~~~f~~~d~~~~g~i~~~ef~~~l~~ 47 (163)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 455666666666666776666666543
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.33 E-value=0.00088 Score=38.34 Aligned_cols=64 Identities=17% Similarity=0.422 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHhc
Q 031226 20 EMQKIFNQFDANKDGKISLTELATVLKSMGSS--YKEEELVRVMEDLDTD----KDGFISLSEFETICRTS 84 (163)
Q Consensus 20 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~~~~~ 84 (163)
++..+|..+.. +.+.|+.++|...|+.-... .+...+..++..+.++ ..+.++++.|..++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46788888844 78889999999998875543 5788888888887543 35778888888887653
No 100
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.31 E-value=0.00033 Score=47.68 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hCCCC--CHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNR-LGIKC--SVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~-~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
...+..+|.+.|.+.+|+|+..|+++.+.. ...++ +-++-...|..+|+|++|+|+++||.--+...
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 456888899999999999999998776643 22221 12333457888899999999999987665543
No 101
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.26 E-value=0.0013 Score=49.55 Aligned_cols=65 Identities=28% Similarity=0.474 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIK---CSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
...+...|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|.|++++|+..+..
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 345777888899 999999999999999876543 35788999999999999999999999986554
No 102
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.23 E-value=0.0032 Score=40.75 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhC---CCCCCcccHHHHHHHHHhc-----------
Q 031226 19 EEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLD---TDKDGFISLSEFETICRTS----------- 84 (163)
Q Consensus 19 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d---~~~~g~i~~~ef~~~~~~~----------- 84 (163)
..|++=..-+|+|+||.|..-|-...++.+|.++-...+-.++-... ....+.+.---|.-.+..+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 34555567789999999999999999999998865544333222211 1112222111111111110
Q ss_pred ---CCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC-----CCC--HHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 85 ---SGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGI-----KCS--VDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 85 ---~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~-----~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
...-..+.+..+|.+++..+.+.+|..|+.++++.-.. .+. .-|-..++... .+++|.+..++-..++-
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 01222578999999999999999999999999986321 112 22223344444 67889999988877765
Q ss_pred cc
Q 031226 155 TS 156 (163)
Q Consensus 155 ~~ 156 (163)
..
T Consensus 166 GS 167 (174)
T PF05042_consen 166 GS 167 (174)
T ss_pred hH
Confidence 43
No 103
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=97.21 E-value=0.00076 Score=48.08 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhccCCCC
Q 031226 87 AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKPG 160 (163)
Q Consensus 87 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 160 (163)
+.....+..+|+.+|.+.++.++..|+..+-. .-.+.-+..+|...|..++|.|+-.||+.++.+.-.|.
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~pc 315 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPPC 315 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccCCCcc
Confidence 34567899999999999999999999876553 23566788999999999999999999999998876543
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.06 E-value=0.0014 Score=28.58 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=10.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHH
Q 031226 95 EAFDLYDQDKNGLISAEELNLVL 117 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~~~ 117 (163)
.+|..+|.+++|.|+..+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34444444444444444444443
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=96.77 E-value=0.028 Score=43.86 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCcccHHHHHHHHHhcCC--CchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHhhhhc------
Q 031226 68 KDGFISLSEFETICRTSSG--AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVD------ 137 (163)
Q Consensus 68 ~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d------ 137 (163)
+.|.++|++|..+...+.. ......+..+|..+..++ +.++.++|..++..... ..+.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3568888888777666542 224567888888886433 67888888888887643 345556666654331
Q ss_pred -CCCCCccchHHHHHHhhcc
Q 031226 138 -ADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 138 -~~~~g~i~~~ef~~~l~~~ 156 (163)
....+.++++.|..+|...
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 1123458888888888753
No 106
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.76 E-value=0.017 Score=45.59 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=81.1
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 031226 53 KEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAM 132 (163)
Q Consensus 53 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~ 132 (163)
....+..+|...|.+.+|.+++.+-..++..+........+...|+..+..+++.+...++..+....... + ++..+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~~~ 210 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVYFL 210 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHHHH
Confidence 34557789999999999999999999999988877777888999999988899999999999988876543 2 77777
Q ss_pred hhhhcCCCCCccchHHHHHHhhcc
Q 031226 133 IKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 133 ~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
|..+- ++.+.++.++++.++...
T Consensus 211 f~~~s-~~~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 211 FVQYS-HGKEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHh-CCCCccCHHHHHHHHHHh
Confidence 77774 337778888777777654
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.0074 Score=45.37 Aligned_cols=74 Identities=27% Similarity=0.296 Sum_probs=63.1
Q ss_pred hhhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 10 NRKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 10 ~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
...+++ ++++.+-..|+-+-+|.+|.|+-.--+.++.+ -.+.-.++..||..+|.+.+|-+++.||+..++...
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 456678 88899999999999999999998777777765 345678899999999999999999999999988754
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.58 E-value=0.026 Score=45.57 Aligned_cols=103 Identities=25% Similarity=0.251 Sum_probs=81.4
Q ss_pred hhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 12 KQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKE-----EELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 12 ~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
+..+ ....+++..|+.++....|.++..+|..++-.+|.+... .++..++...|...-|++++.+|...+....
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3445 777899999999999999999999999999999987763 2344455555666678999999999987754
Q ss_pred -CCchHHHHHHHHHHhcCCCCCcccHHHHHH
Q 031226 86 -GAAGEAELREAFDLYDQDKNGLISAEELNL 115 (163)
Q Consensus 86 -~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~ 115 (163)
.......+..+|..+-.++. +|..+|+..
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 45557788889999977665 788888766
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.53 E-value=0.16 Score=41.22 Aligned_cols=125 Identities=16% Similarity=0.257 Sum_probs=92.1
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCC--CCC-----cccHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 031226 29 DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTD--KDG-----FISLSEFETICRTSSGAAGEAELREAFDLYD 101 (163)
Q Consensus 29 d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g-----~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d 101 (163)
-.+..|.|....+...+.. ...+..++..+..+... .+. ..+++.|..++..+.. ...+..+|..+.
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp---R~eie~iF~ki~ 231 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP---RPEIEEIFRKIS 231 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC---chhHHHHHHHhc
Confidence 3578899999998887754 22335555555555322 222 2456666777777665 457899999999
Q ss_pred CCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHhhhhcCCC----CCccchHHHHHHhhccCCC
Q 031226 102 QDKNGLISAEELNLVLNRL----------GIKCSVDGCVAMIKPVDADG----DGNVNFEEFRSMMTTSLKP 159 (163)
Q Consensus 102 ~~~~g~i~~~e~~~~~~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~~~~~~ 159 (163)
.++..++|.++|..++..- -....+..+..++..+..+. .|.++-+.|+.++.+...+
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdEn~ 303 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDENA 303 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCccc
Confidence 9988999999999999753 23467888999999997764 5999999999999885544
No 110
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.019 Score=34.66 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=41.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCC----------CCCHHHHHHHHHh----hCCCCCCcccHHHHHHH
Q 031226 22 QKIFNQFDANKDGKISLTELATVLKSMGS----------SYKEEELVRVMED----LDTDKDGFISLSEFETI 80 (163)
Q Consensus 22 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~----------~~~~~~~~~l~~~----~d~~~~g~i~~~ef~~~ 80 (163)
-..|...|.++++.|+--|+.+++..... -.++.++..+++. -|.+++|.|+|-||+..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 35688889999999999998888876421 1345555554444 46778888888888753
No 111
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.35 E-value=0.014 Score=41.94 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 18 REEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 18 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
...+..+|.++|.|.+|.|+..|++.+-. .-.+.=++.+|+.+|...+|.|+-.||...+....
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 34556667777777777777777666542 24455566677777777777777777777666544
No 112
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.018 Score=43.44 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
.+.+..-|+.+-.|-.|+|+..--+.++... ++...|+..||...|.+.||-+++.||+..|.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4567778888899999999999888888764 46788999999999999999999999999875
No 113
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.98 E-value=0.022 Score=43.73 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=67.9
Q ss_pred hhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC
Q 031226 11 RKQLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGA 87 (163)
Q Consensus 11 ~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 87 (163)
.-.++ .+.......|..+|.++.|+++..+....|...+...+...+..++...+..-+|.+...+|..++....+.
T Consensus 584 ~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 584 PIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred ccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 33455 788888899999999999999999999999999888999999999999998889999999999998876543
No 114
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.90 E-value=0.0094 Score=42.49 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHH---HHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhccCC
Q 031226 92 ELREAFDLYDQDKNGLISAEELNL---VLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLK 158 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 158 (163)
.+..-|..+|.++++.|.+.|++- ++..-.. ...-...+++-.|.|+|..|++.||+.+|.....
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~--~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK--PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc--HHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 466679999999999999999644 4433221 2334567899999999999999999999986654
No 115
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.81 E-value=0.019 Score=44.57 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhcCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHH
Q 031226 36 ISLTELATVLKSMGS-SYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEEL 113 (163)
Q Consensus 36 i~~~ef~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~ 113 (163)
+....|..+++.+.. ..+..-+.++|+..|..++|.|+|.+++..+..+......+.+.-+|+.+|.+++ ..+.++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 444555555554332 2345567889999999999999999999999999888888999999999999998 8888887
No 116
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.57 E-value=0.082 Score=34.07 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHhcC---CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031226 71 FISLSEFETICRTSS---GAAGEAELREAFDLYDQDKNGLISAEELNLVLN 118 (163)
Q Consensus 71 ~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~ 118 (163)
.++-..|..++.... .......+..+|..+-..+...|++++|..+|.
T Consensus 18 ~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 18 EMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp EEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 455555555544432 223334444555554333334455555544443
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.55 E-value=0.13 Score=33.17 Aligned_cols=64 Identities=11% Similarity=0.256 Sum_probs=48.2
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 22 QKIFNQF---DANKDGKISLTELATVLKSMG---SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 22 ~~~f~~~---d~~~~g~i~~~ef~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
+.+|..| -......|+-..|..+++..+ ..++..++.-+|..+-..+...|+|++|+.++..+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4455555 355667899999999999964 458899999999998766667799999999987643
No 118
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.019 Score=46.79 Aligned_cols=137 Identities=21% Similarity=0.296 Sum_probs=102.7
Q ss_pred hH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc--------
Q 031226 14 LI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS-------- 84 (163)
Q Consensus 14 ~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-------- 84 (163)
++ .+...+..+|+.+.+. +|.++-...+.++. .-.+....+.+++..+|.+.+|.++..+|...++..
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~--~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILL--NSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhh--cCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 44 6667777778888544 77888777777764 345566777788888888888888888887654311
Q ss_pred -----------------------------------------------------------------------------CCC
Q 031226 85 -----------------------------------------------------------------------------SGA 87 (163)
Q Consensus 85 -----------------------------------------------------------------------------~~~ 87 (163)
...
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence 011
Q ss_pred chHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 88 AGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 88 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
.....+..+|...|.+.+|.|+..+....+.. ..++...+..+|...|..+.|.|++.+|.-.+.-
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 11234666889999999999999999888876 4567888999999999999999999988776653
No 119
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.41 E-value=0.25 Score=28.71 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRL-------G----IKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
.++++.+|..+ .|++|.++...|..++... + ....+..++..|... .....|+.++|+.++...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 35778888888 5788999999988877542 2 122667778888877 356789999999998865
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.32 E-value=0.04 Score=46.80 Aligned_cols=60 Identities=15% Similarity=0.375 Sum_probs=51.6
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 24 IFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 24 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.|..||+++.|.|+..+|..+|... ...+..+++-++.....+.+..+++++|+..++..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 4788999999999999999999763 44678889999999988999999999999887653
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.11 E-value=0.011 Score=32.47 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCC-------CCccchHHHHHHh
Q 031226 89 GEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADG-------DGNVNFEEFRSMM 153 (163)
Q Consensus 89 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~ef~~~l 153 (163)
..+.+..+|+.+ .++.++||.++|++.+. +++++.+...+..-. .|.++|..|++.|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 357889999999 67889999999988863 344455555553322 2678898887654
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.77 E-value=0.059 Score=41.48 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhccCCC
Q 031226 92 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKP 159 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 159 (163)
..+.-|..+|.++.+.++...+..+++..+..++++.++.+++..+.+.+|.+...||.+++.....+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 45667889999999999999999999999988999999999999999999999999999998766544
No 123
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=94.68 E-value=0.04 Score=33.28 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 124 CSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 124 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
+++++++.++..+-.|..|.|.|.||+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 689999999999999999999999999998744
No 124
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.071 Score=42.53 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
-+...++.+|+.+|+...|+|+-..-+.+|-.. .++...+..|+..-|.|++|+++.+||+-.+..
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 456678889999999999999999988888654 456677788888899999999999999876543
No 125
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.41 E-value=0.088 Score=44.90 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=52.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhccC
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 157 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 157 (163)
.|+.+|.|+.|.|+..+|..++... .+.+..+++-++.....+.+..++|++|+.-+..+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhepa 4122 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPA 4122 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCch
Confidence 4667899999999999999998654 346888999999999999999999999999887654
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.06 E-value=0.048 Score=39.05 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcC-CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 58 VRVMEDLDTDKDGFISLSEFETICRTSS-GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 58 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
.-.|..+|.++++.|+..||..+=..+. ........+.+|+..|.++|..|++.|++..+...
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 3467778999888888777766544443 22335678889999999999999999998877653
No 127
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.03 E-value=0.44 Score=31.16 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031226 18 REEMQKIFNQFDANKDGKISLTELATVLKS 47 (163)
Q Consensus 18 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 47 (163)
-+.++++|.+++..+.+.|+..|+..+++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 466778888887777778888888777765
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=93.59 E-value=1.6 Score=34.58 Aligned_cols=87 Identities=7% Similarity=0.078 Sum_probs=60.7
Q ss_pred CCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC--chHHHHHHHHHHh----c--
Q 031226 32 KDGKISLTELATVLKSMGS--SYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGA--AGEAELREAFDLY----D-- 101 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~----d-- 101 (163)
+.|.+++++|..+.+.+.. .....++..+|..+-.++ +.++.++|..++...... ...+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988777642 346889999999996544 679999999999886632 2234445554432 1
Q ss_pred -CCCCCcccHHHHHHHHHH
Q 031226 102 -QDKNGLISAEELNLVLNR 119 (163)
Q Consensus 102 -~~~~g~i~~~e~~~~~~~ 119 (163)
....+.++.+.|..++..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112345899999888853
No 129
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.58 E-value=0.18 Score=36.02 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh-----CCCCCHHH-----------HHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLNRL-----GIKCSVDG-----------CVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~-----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
.+..|..+|.+++|+++-.|+..++... .....+++ -..+++.+|.|.+..|+++||++.-.+.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 3445666788999999999998887653 11111111 2347889999999999999999876654
Q ss_pred C
Q 031226 157 L 157 (163)
Q Consensus 157 ~ 157 (163)
-
T Consensus 326 e 326 (442)
T KOG3866|consen 326 E 326 (442)
T ss_pred c
Confidence 4
No 130
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.04 E-value=0.52 Score=38.29 Aligned_cols=139 Identities=15% Similarity=0.207 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHH-HHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHH-
Q 031226 19 EEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELV-RVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREA- 96 (163)
Q Consensus 19 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~-~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~- 96 (163)
.-+++.+...|......|+..+++..+...+...+..... .-|.. |.-+.+.++|++|..+...+.-......+...
T Consensus 144 ~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~ 222 (1267)
T KOG1264|consen 144 RWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFK 222 (1267)
T ss_pred HHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhccc
Confidence 4446667777777777899999999998877766554432 22322 33456789999999988876533222222111
Q ss_pred --HHHh--cCCCCCcccHHHHHHHHHHhCCCCCHH---HHHHHhhhhcCC-----CCCccchHHHHHHhhccCC
Q 031226 97 --FDLY--DQDKNGLISAEELNLVLNRLGIKCSVD---GCVAMIKPVDAD-----GDGNVNFEEFRSMMTTSLK 158 (163)
Q Consensus 97 --f~~~--d~~~~g~i~~~e~~~~~~~~~~~~~~~---~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~~~~ 158 (163)
|-.- +...--.|+..+|.+++.......... .++.++..|-.| ....+.+.||+.+|-.+..
T Consensus 223 ~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSreN 296 (1267)
T KOG1264|consen 223 KDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSREN 296 (1267)
T ss_pred chhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhccc
Confidence 1111 112235799999999997653322222 355556555222 3466899999999876543
No 131
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.95 E-value=0.8 Score=36.05 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF 77 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef 77 (163)
.+..-++++|+.+|.+++|.|+..+|...+..+...-..+.+.-+|..+|..++ ..+.++-
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 445667899999999999999999999999998877778889999999999888 7777776
No 132
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.10 E-value=0.51 Score=38.60 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHhhhhcCCCCCccchHHHHHHhhccCC
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSV-----DGCVAMIKPVDADGDGNVNFEEFRSMMTTSLK 158 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 158 (163)
..++..|+.+++...|.++.+++..++...|+..-. ++...+....|.+.-|.+++.+|...|.....
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 468888999999999999999999999999887653 22333444446566689999999999987654
No 133
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=91.41 E-value=1.2 Score=26.27 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCC---CCCCcccHHHHHHHHHhc
Q 031226 19 EEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDT---DKDGFISLSEFETICRTS 84 (163)
Q Consensus 19 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~---~~~g~i~~~ef~~~~~~~ 84 (163)
..+++.|..+-. +|.|+.+.|..++ |-.-+.+-..+||..+-. -....|+.+|+..++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 345555666643 6777777777764 333455556666665521 112346666666555443
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.39 E-value=1.7 Score=34.25 Aligned_cols=65 Identities=15% Similarity=0.354 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHhhhhcC-CCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDA-DGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~ 156 (163)
...+..+|..+.. ++.++.++|..++..... ..+.+.+..++..+.. ...+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 3466777777643 357777777777766542 2355556666665422 234567777777777654
No 135
>PLN02228 Phosphoinositide phospholipase C
Probab=89.54 E-value=3.6 Score=32.45 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHhhhhcCC----CCCccchHHHHHHhhc
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDAD----GDGNVNFEEFRSMMTT 155 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 155 (163)
+++..+|..+.. ++.++.++|..++..... ..+.+.+..++..+... ..|.++++.|..+|..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 344445544432 134555555555544321 12233344444444221 2234555555555544
No 136
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=89.52 E-value=2.8 Score=24.41 Aligned_cols=62 Identities=15% Similarity=0.302 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhc-------C----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 19 EEMQKIFNQFDANKDGKISLTELATVLKSM-------G----SSYKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 19 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
++++.+|..+ .|.+|.++...|..+|+.+ + ....+..+...|... .....|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 5678889999 7899999999999988773 1 112455555555544 12345777777766654
No 137
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.47 E-value=0.94 Score=32.52 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=54.7
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHh----cCCCCC-HH-----------HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC
Q 031226 24 IFNQFDANKDGKISLTELATVLKS----MGSSYK-EE-----------ELVRVMEDLDTDKDGFISLSEFETICRTSSGA 87 (163)
Q Consensus 24 ~f~~~d~~~~g~i~~~ef~~~l~~----~~~~~~-~~-----------~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~ 87 (163)
.|...|.|++|+++-.++..++.. .....+ +. .-+.+++..|.+.+..|++++|+.........
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~ 328 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFN 328 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccC
Confidence 355667789999999998887765 222111 11 12347777899999999999999876654422
Q ss_pred chHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031226 88 AGEAELREAFDLYDQDKNGLISAEELNLVLN 118 (163)
Q Consensus 88 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~ 118 (163)
... .-|..++ ....-|-+|++++=+
T Consensus 329 ~p~----e~WEtl~--q~~~yTeEEL~~fE~ 353 (442)
T KOG3866|consen 329 PPK----EEWETLG--QKKVYTEEELQQFER 353 (442)
T ss_pred Ccc----hhhhhhc--ccccccHHHHHHHHH
Confidence 221 2333332 334556666665543
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.31 E-value=3.5 Score=32.69 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHhhhhc-------CCCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGI---KCSVDGCVAMIKPVD-------ADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~---~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~l~~~ 156 (163)
...+..+|..+..++ +.++.++|..++..... ..+.+++..++..+- .-+.+.++++.|..+|...
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 457788888885333 68888888888877642 234555555554331 1234568888888888764
No 139
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.56 E-value=0.29 Score=40.28 Aligned_cols=67 Identities=27% Similarity=0.357 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.....+.++|...|.+.+|.|+..+....+.. ..+....+..++...|..+.|.+++.+|...+..+
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 67788888999999999999999999998866 66778899999999999999999999998776553
No 140
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=87.23 E-value=4.3 Score=23.91 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=48.6
Q ss_pred CCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-CchHHHHHHHHHHhcCCCCCcc
Q 031226 32 KDGKISLTELATVLKSMG--SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG-AAGEAELREAFDLYDQDKNGLI 108 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i 108 (163)
-||.++..|...+-..+. ..++..+...++..+........++.+|...+..... ......+..+|... --||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 367788777666554422 2456677777777776655566788888888776442 22233444455554 245677
Q ss_pred cHHHH
Q 031226 109 SAEEL 113 (163)
Q Consensus 109 ~~~e~ 113 (163)
+..|-
T Consensus 90 ~~~E~ 94 (104)
T cd07313 90 DEYEE 94 (104)
T ss_pred CHHHH
Confidence 76663
No 141
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=87.11 E-value=4.2 Score=32.98 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHhhcCCC-CCcccHHHHHHHHHhc--------CC--CCC---HHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 16 VSREEMQKIFNQFDANK-DGKISLTELATVLKSM--------GS--SYK---EEELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~-~g~i~~~ef~~~l~~~--------~~--~~~---~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
....-+.++|...+..+ +..+...+...+|... +. +.+ .--++-+++.||...+|.|..-.|.-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 44556677788887554 4455665555554432 21 111 2235678999999999999999999988
Q ss_pred HhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHH-------H------HhCCCCCHHHHHHHhhhhcCCCCCccchHH
Q 031226 82 RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVL-------N------RLGIKCSVDGCVAMIKPVDADGDGNVNFEE 148 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~-------~------~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 148 (163)
..+.+....+.++.+|.....++...+ ...|..++ + ++|...-+.-++..|.. .++...|++..
T Consensus 497 i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~--v~~~pei~~~~ 573 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQF--VNNKPEIEAAL 573 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHh--cCCCCcchHHH
Confidence 888877778999999999876655443 44443333 2 23444444556677773 46677888888
Q ss_pred HHHHhhc
Q 031226 149 FRSMMTT 155 (163)
Q Consensus 149 f~~~l~~ 155 (163)
|...+.-
T Consensus 574 f~dw~~~ 580 (966)
T KOG4286|consen 574 FLDWMRL 580 (966)
T ss_pred HHHHhcc
Confidence 8887654
No 142
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.04 E-value=4.1 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 35 KISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.||..||..+..+.+.+++...++.++..+....-.-.+-++=..++..+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 47777888887777777777777777777754443334444444444433
No 143
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=0.83 Score=33.58 Aligned_cols=65 Identities=29% Similarity=0.474 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHH-HhhhhcCCCCCccchHHHHHHhh
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVA-MIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
.+.++++|+.+|+.+.|+|+-+-++.+++..+...++.+.-. +=+..|+..-|.|-.++|+.-+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 467999999999999999999999999999886566555444 44455777778887777665443
No 144
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.39 E-value=2.6 Score=33.13 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=56.6
Q ss_pred hH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCc
Q 031226 14 LI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSY----KEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA 88 (163)
Q Consensus 14 ~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 88 (163)
++ .-++.+..+|..+|.++||.++..|+..+.......+ ...+.-. ....|.+++.-|+..+......+
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~~WsL~Tlld 382 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV------KNERGWLTLNGFLSQWSLMTLLD 382 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce------ecccceeehhhHHHHHHHHhhcc
Confidence 44 6678899999999999999999999999988864332 1111100 12568999999999887755332
Q ss_pred hHHH-HHHHHHHhcCC
Q 031226 89 GEAE-LREAFDLYDQD 103 (163)
Q Consensus 89 ~~~~-~~~~f~~~d~~ 103 (163)
.... -.-+|..|..+
T Consensus 383 ~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 383 PRRTLEYLAYLGFPTD 398 (625)
T ss_pred HHHHHHHHHhcCCccc
Confidence 2222 23356566555
No 145
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.16 E-value=1 Score=27.41 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 52 YKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 52 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
++++.++.++..+-.+..|+|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67899999999999999999999999998875
No 146
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=84.60 E-value=4.9 Score=22.05 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
++-+++..++...+..++.+++..+++.-+..+--..+-+.+..|+.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 34456667777777777777777777776544444444445555443
No 147
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=83.84 E-value=12 Score=31.30 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC----------CCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMG----------SSYKEEELVRVMEDLDTDK----DGFISLSEFETIC 81 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~----------~~~~~~~~~~l~~~~d~~~----~g~i~~~ef~~~~ 81 (163)
-.+.+++++|..+-.+..-+++..+|..++++-. .......+..|+..+.++. .|.++.+-|+.++
T Consensus 218 cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 218 CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 3457889999999888889999999999998843 2355677888888886554 6899999999988
Q ss_pred Hhc
Q 031226 82 RTS 84 (163)
Q Consensus 82 ~~~ 84 (163)
..-
T Consensus 298 ~gd 300 (1189)
T KOG1265|consen 298 MGD 300 (1189)
T ss_pred hCC
Confidence 763
No 148
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.70 E-value=13 Score=26.24 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=53.1
Q ss_pred HhHHHHHHHHHhh-cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 031226 16 VSREEMQKIFNQF-DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS 85 (163)
Q Consensus 16 ~~~~~~~~~f~~~-d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 85 (163)
.+...+...|..+ |+..+..|-.+-+..+++.+|..+..-.+--+--.++...-+..+.++|+.-+..+.
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~ 131 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALG 131 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcC
Confidence 4566778888777 455556899999999999999988766665666667767778899999988665544
No 149
>PLN02222 phosphoinositide phospholipase C 2
Probab=83.51 E-value=7.7 Score=30.81 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHhhCC-CCCCcccHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSS--YKEEELVRVMEDLDT-DKDGFISLSEFETICRT 83 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~~ 83 (163)
....++..+|..+-. ++.|+.++|...|...+.. .+.+.+..|+..+.. ...+.++++.|..++..
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 345688899999843 5799999999999987653 467788888887532 23566999999998865
No 150
>PLN02228 Phosphoinositide phospholipase C
Probab=82.98 E-value=10 Score=30.05 Aligned_cols=66 Identities=14% Similarity=0.334 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHhhCCC----CCCcccHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSS--YKEEELVRVMEDLDTD----KDGFISLSEFETICRT 83 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~~~~ 83 (163)
+...++..+|..+-. ++.|+.++|...|...+.. .+.+.+..++..+... ..|.++.+.|..++..
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 456788888988843 3689999999999987643 4567788888887543 2467999999998754
No 151
>PLN02230 phosphoinositide phospholipase C 4
Probab=82.94 E-value=10 Score=30.27 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGS---SYKEEELVRVMEDLD-------TDKDGFISLSEFETICRT 83 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~~l~~~~d-------~~~~g~i~~~ef~~~~~~ 83 (163)
....++..+|..+- .+++.|+.++|...|..-+. ..+.+.+..++..+- .-..+.++++.|..++..
T Consensus 26 ~p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45678999999994 44489999999999999763 246677777775441 112346999999998754
No 152
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.84 E-value=5.6 Score=32.06 Aligned_cols=77 Identities=21% Similarity=0.409 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHhhhhcCCCCCc
Q 031226 72 ISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL---G-----IKCSVDGCVAMIKPVDADGDGN 143 (163)
Q Consensus 72 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~---~-----~~~~~~~~~~~~~~~d~~~~g~ 143 (163)
+++++|. ....+-.+.++..|..+|. .+|.++.+++..++... + ...+.+....++...|.+..|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 6666666 2333335566666666665 66667776666655432 1 1123334445666666666666
Q ss_pred cchHHHHHHhh
Q 031226 144 VNFEEFRSMMT 154 (163)
Q Consensus 144 i~~~ef~~~l~ 154 (163)
+.++++...+.
T Consensus 78 ~~~~~~~~ll~ 88 (646)
T KOG0039|consen 78 ITNEDLEILLL 88 (646)
T ss_pred eeecchhHHHH
Confidence 66555555444
No 153
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.79 E-value=1.8 Score=31.98 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCCcccHHHHHHHHHh
Q 031226 17 SREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVME-DLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 17 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~-~~d~~~~g~i~~~ef~~~~~~ 83 (163)
...++++.|+.+|+.++|+|+.+-+..+|..++...++...-.+.+ .+|+..-|.|-..+|...+..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 3578999999999999999999999999999886666555444333 356666676766776655443
No 154
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.87 E-value=9.3 Score=21.98 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC
Q 031226 71 FISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLG 121 (163)
Q Consensus 71 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~ 121 (163)
.|+..|++.+.....-+-..+.+..+...+-.+.-+..+.++-..+++.+.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 466666666666666555556666666666555556666666666665543
No 155
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.51 E-value=3.5 Score=16.90 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=10.7
Q ss_pred cCCCCCcccHHHHHHHH
Q 031226 29 DANKDGKISLTELATVL 45 (163)
Q Consensus 29 d~~~~g~i~~~ef~~~l 45 (163)
|.|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 45677777777766543
No 156
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.43 E-value=4 Score=22.52 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=24.1
Q ss_pred cccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 71 FISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 71 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
.++|......+.....+.....+...|+. =+.+.|+++||.+.++.+
T Consensus 8 ~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~---~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLPPSKMDLLQKHYEE---FKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHH
Confidence 35555555555555543333333333333 345667777766666554
No 157
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=79.20 E-value=6.1 Score=19.52 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhcC--CCCCcccHHHHHHHHHh
Q 031226 17 SREEMQKIFNQFDA--NKDGKISLTELATVLKS 47 (163)
Q Consensus 17 ~~~~~~~~f~~~d~--~~~g~i~~~ef~~~l~~ 47 (163)
.+..+-.+|++|-. .....++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 35667788888852 34568999999988875
No 158
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=78.26 E-value=14 Score=23.05 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 92 ELREAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
.+..++..||.++.|.|+.-.|+..+..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4667788888888888888888776643
No 159
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=77.77 E-value=0.88 Score=30.48 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 031226 68 KDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLV 116 (163)
Q Consensus 68 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~ 116 (163)
.+|+++-.|+.-+-..+. ..+..+...|...|.|++|.|+..|+...
T Consensus 201 ~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred ccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 356666666654432221 22445666666666666666666665443
No 160
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=77.43 E-value=9.3 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 031226 32 KDGKISLTELATVLKSMGSSYKEEELVRVMEDL 64 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~ 64 (163)
.+-.|+.+-++..+.+.|..+|+..++.+++.+
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 355799999999999999999999999988765
No 161
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=76.81 E-value=12 Score=21.54 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 35 KISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
.++..+|...|.....-.+..+...+-..+|...+++|+.=||-.+.+.
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 4555555555555444334344444555555555555555555444433
No 162
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.71 E-value=7.6 Score=24.61 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=32.3
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHHhcCC-CchHHHHHHHHHHhcCCC
Q 031226 34 GKISLTELATVLKSMGSSYKEEELVRVMEDLD-------TDKDGFISLSEFETICRTSSG-AAGEAELREAFDLYDQDK 104 (163)
Q Consensus 34 g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d-------~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~ 104 (163)
+.|+..||..+-.-.. .+...+..++..|. .+..+.|+++.|..++..... ....+....+|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4567777766533221 13334455555542 223446888888888877662 234556677777775443
No 163
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.36 E-value=11 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 031226 31 NKDGKISLTELATVLKSMGSSYKEEELVRVMEDL 64 (163)
Q Consensus 31 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~ 64 (163)
..+-.|+.+-++..+.+.|..+|+..++++++..
T Consensus 34 k~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 34 KDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3455789999999999999999999999988765
No 164
>PLN02223 phosphoinositide phospholipase C
Probab=75.93 E-value=22 Score=28.08 Aligned_cols=67 Identities=4% Similarity=-0.040 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHhhhhcC--------CCCCccchHHHHHHhhcc
Q 031226 90 EAELREAFDLYDQDKNGLISAEELNLVL---NRLG--IKCSVDGCVAMIKPVDA--------DGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 90 ~~~~~~~f~~~d~~~~g~i~~~e~~~~~---~~~~--~~~~~~~~~~~~~~~d~--------~~~g~i~~~ef~~~l~~~ 156 (163)
.+.++.+|..+. .+.|.++.+.+..++ .... ...+.++++.++..+-. ...+.++++.|..+|...
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 466777777774 556777777777766 4432 23455555555554421 122568888888888774
Q ss_pred C
Q 031226 157 L 157 (163)
Q Consensus 157 ~ 157 (163)
.
T Consensus 94 ~ 94 (537)
T PLN02223 94 E 94 (537)
T ss_pred c
Confidence 3
No 165
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=75.13 E-value=34 Score=25.92 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCc---cc
Q 031226 33 DGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGL---IS 109 (163)
Q Consensus 33 ~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~---i~ 109 (163)
.-.+.+..|..+|.......+--+.-.+-..+|...++.|+--||-.+-+.+.. -..+-+-|+.+...+.|+ +|
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP---w~tllkNWq~LavtHPGYmAFLT 264 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP---WKTLLKNWQTLAVTHPGYMAFLT 264 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc---HHHHHHhhhhhhccCCceeEEee
Confidence 446778888888888766555556666677778888888886666555444332 223555667777777776 78
Q ss_pred HHHHHHHHHHh
Q 031226 110 AEELNLVLNRL 120 (163)
Q Consensus 110 ~~e~~~~~~~~ 120 (163)
++|++.-++..
T Consensus 265 YDEVk~RLqk~ 275 (563)
T KOG1785|consen 265 YDEVKARLQKY 275 (563)
T ss_pred HHHHHHHHHHH
Confidence 99988877653
No 166
>PRK00523 hypothetical protein; Provisional
Probab=74.16 E-value=13 Score=20.63 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 031226 32 KDGKISLTELATVLKSMGSSYKEEELVRVMEDL 64 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~ 64 (163)
.+-.|+.+-++..+.+.|..+|+..++++++.+
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455788899999999999999999999988776
No 167
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=74.08 E-value=16 Score=21.69 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCC---CCCcccHHHHHHHHHHh
Q 031226 54 EEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQD---KNGLISAEELNLVLNRL 120 (163)
Q Consensus 54 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~---~~g~i~~~e~~~~~~~~ 120 (163)
...++.=|..+-. +|.+....|-.++-.. ...+-+.++|..+-.- ..+.|+.+|+..++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 5667777777755 7899999999887654 3356677777776432 25779999998888664
No 168
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=73.66 E-value=4.6 Score=22.28 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC
Q 031226 35 KISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG 86 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 86 (163)
.+++..+..++. ..+.......+...|+.-..+.|+-++|+..++....
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 444444444443 3455555555555554445677888888888777654
No 169
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=73.53 E-value=34 Score=26.18 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC-chHHHHHHHHHHhcCCCC
Q 031226 31 NKDGKISLTELATVLKSM----GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGA-AGEAELREAFDLYDQDKN 105 (163)
Q Consensus 31 ~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~ 105 (163)
.|+...+..||..+.... ...+..+.+..|-+.+|.|.+|.|+.+|--.+++.-.+- .....-...|+. .|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cc
Confidence 455556666665543321 134566778888899999999999998888887764422 222233334543 56
Q ss_pred CcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 031226 106 GLISAEELNLVLNRL-GIKCSVDGCVAM 132 (163)
Q Consensus 106 g~i~~~e~~~~~~~~-~~~~~~~~~~~~ 132 (163)
..|+.+++..++... -..+|.++.-..
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~tvqW 143 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERTVQW 143 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHHHHH
Confidence 789999998877654 456666665443
No 170
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=73.35 E-value=20 Score=22.75 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHhcCCCchHHHHHHHHHHhcC-------CCCCcccHHHHHHHHHHh-CCCCCHHHHHHHhhhhcC
Q 031226 70 GFISLSEFETICRTSSGAAGEAELREAFDLYDQ-------DKNGLISAEELNLVLNRL-GIKCSVDGCVAMIKPVDA 138 (163)
Q Consensus 70 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~-------~~~g~i~~~e~~~~~~~~-~~~~~~~~~~~~~~~~d~ 138 (163)
+.|+-.||..+-.-..-. ..+++.+...|.. +..+.|+++-|+.+|+.. ...+.++-...+|..|-.
T Consensus 6 ~~lsp~eF~qLq~y~eys--~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYS--TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred eccCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 457777777664432210 1234444444422 345689999999999985 556778888899999844
No 171
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=73.19 E-value=18 Score=21.87 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 031226 23 KIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI 80 (163)
Q Consensus 23 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 80 (163)
..|-.+...++-..+..++..++...|.....+.++.+++.+ +|+ +.+|.+..
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 445666777888899999999999999999999999999888 444 66777654
No 172
>PLN02223 phosphoinositide phospholipase C
Probab=72.69 E-value=25 Score=27.77 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHH---HhcC--CCCCHHHHHHHHHhhCCCC--------CCcccHHHHHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVL---KSMG--SSYKEEELVRVMEDLDTDK--------DGFISLSEFETICR 82 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~g~i~~~ef~~~~~ 82 (163)
..-..+..+|..+ ..+.|.++...+..++ ...+ ...+.++++.++..+-... .+.++++.|..++.
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 3456788899999 5788999999999988 4433 2466777777777653222 25699999999876
Q ss_pred h
Q 031226 83 T 83 (163)
Q Consensus 83 ~ 83 (163)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 173
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=71.75 E-value=24 Score=23.74 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=7.8
Q ss_pred CCcccHHHHHHHHHh
Q 031226 69 DGFISLSEFETICRT 83 (163)
Q Consensus 69 ~g~i~~~ef~~~~~~ 83 (163)
+|.|+++++...+..
T Consensus 11 DGTITl~Ds~~~itd 25 (220)
T COG4359 11 DGTITLNDSNDYITD 25 (220)
T ss_pred CCceEecchhHHHHh
Confidence 455555555555444
No 174
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=70.86 E-value=6.2 Score=23.23 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=39.5
Q ss_pred CCcccHHHHHHHHHhcCC--CchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHhhhhcCCCCC
Q 031226 69 DGFISLSEFETICRTSSG--AAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDG----CVAMIKPVDADGDG 142 (163)
Q Consensus 69 ~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~g 142 (163)
+|.++-.|-..+-..+.. ....+....+...+........+..++...+.... +.+. +..+|...- -||
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~l~~L~~vA~--ADG 87 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF---DYEERLELVEALWEVAY--ADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH--hcC
Confidence 677887776655433221 12234455555666555566677777766665432 3333 333444443 345
Q ss_pred ccchHH
Q 031226 143 NVNFEE 148 (163)
Q Consensus 143 ~i~~~e 148 (163)
.++..|
T Consensus 88 ~~~~~E 93 (104)
T cd07313 88 ELDEYE 93 (104)
T ss_pred CCCHHH
Confidence 555543
No 175
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=70.32 E-value=15 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.606 Sum_probs=13.9
Q ss_pred hCCCCCCcccHHHHHHHHHh
Q 031226 64 LDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 64 ~d~~~~g~i~~~ef~~~~~~ 83 (163)
+|...+.+|++++...++..
T Consensus 12 YDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cCCCccceeeHHHHHHHHHC
Confidence 46666677777777777665
No 176
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=69.77 E-value=19 Score=20.74 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 52 YKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 52 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
++..++...++..-. .+.-|.+.+|...+..............+=..+|-..+|+|+.=||--+.+-+
T Consensus 4 ITK~eA~~FW~~~Fg-~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFG-KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SSHHHHHHHHHHHT-T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHCC-CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 444555555554422 23458888888888776655544555556667788888888888876665544
No 177
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=69.22 E-value=35 Score=25.26 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=61.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC---------C--CCCH
Q 031226 58 VRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLG---------I--KCSV 126 (163)
Q Consensus 58 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~---------~--~~~~ 126 (163)
..++..+|..+.|.++.--....+.....+.-.+.++.+|.... |..|.+..-.+.+++.... . ..++
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te 191 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTE 191 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHH
Confidence 34566678888888877777777777777777889999998886 5678887777777776531 1 1223
Q ss_pred HHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 127 DGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 127 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
.-++..|. ...++.++.|+..+...
T Consensus 192 ~~a~~cf~-----qqrKv~Ln~fldtl~sd 216 (434)
T KOG4301|consen 192 LSARLCFL-----QQRKVELNQFLDTLMSD 216 (434)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhcC
Confidence 22322222 23567777777776543
No 178
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=69.16 E-value=11 Score=28.63 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCCCcccHHHHHHHHHhcC----CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 67 DKDGFISLSEFETICRTSS----GAAGEAELREAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 67 ~~~g~i~~~ef~~~~~~~~----~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
.++...+-.||+....... .....+.++.+-+.+|.|.+|.|+.+|-..+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 4566777788866543322 2334677899999999999999999998888875
No 179
>PRK01844 hypothetical protein; Provisional
Probab=67.54 E-value=19 Score=19.96 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 031226 32 KDGKISLTELATVLKSMGSSYKEEELVRVMEDL 64 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~ 64 (163)
.+-.|+.+-++..+.+.|..+|+..++++.+.+
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345688899999999999999999999888776
No 180
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=65.07 E-value=19 Score=23.17 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhhcCCC----CC-cccHHHHHHHHHhcC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--
Q 031226 17 SREEMQKIFNQFDANK----DG-KISLTELATVLKSMG----SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-- 85 (163)
Q Consensus 17 ~~~~~~~~f~~~d~~~----~g-~i~~~ef~~~l~~~~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-- 85 (163)
....+++.|+.|-..+ +| .|+-..|..++...+ ..++..+....|..+.....+.++|++|...+..+.
T Consensus 10 ~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~ 89 (180)
T KOG4070|consen 10 DMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATK 89 (180)
T ss_pred chhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHh
Confidence 3445555555554333 33 567777888887753 345555666677666555667899999977766543
Q ss_pred ---CCchHHHHHHHHHHhcC
Q 031226 86 ---GAAGEAELREAFDLYDQ 102 (163)
Q Consensus 86 ---~~~~~~~~~~~f~~~d~ 102 (163)
.....+.+..+...+..
T Consensus 90 R~k~Ks~ee~l~~I~~llag 109 (180)
T KOG4070|consen 90 RFKGKSKEEALDAICQLLAG 109 (180)
T ss_pred hhcCCCHHHHHHHHHHHHhc
Confidence 23344555555555543
No 181
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=62.44 E-value=14 Score=20.01 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCC
Q 031226 104 KNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADG 140 (163)
Q Consensus 104 ~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 140 (163)
.++.++..++.+.+...+..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888888886654
No 182
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=60.36 E-value=36 Score=20.62 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHH
Q 031226 95 EAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSM 152 (163)
Q Consensus 95 ~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 152 (163)
-+|-.+...++...+..+++.++...|....++.+..++..+ .|+ +.+|.+..
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 355566667777889999999999999999999999999888 233 56666554
No 183
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=59.65 E-value=18 Score=19.51 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=13.9
Q ss_pred HhcCCCCCcccHHHHHHHHHH
Q 031226 99 LYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 99 ~~d~~~~g~i~~~e~~~~~~~ 119 (163)
.||+..+.+|+.+++.++++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 456666777777777776653
No 184
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.10 E-value=17 Score=32.64 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=52.2
Q ss_pred hhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 13 QLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYK----EEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 13 ~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.++ ...+.+.++++.+|++..|+|...++..+++.+..++. ... +.+.-.+-...++.|++.+-+.++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 667 88999999999999999999999999999999754432 111 112222233466789999988887664
No 185
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=58.43 E-value=29 Score=20.38 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHHhcCC-----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-CchHHHHHHHHHHhcCCCC
Q 031226 32 KDGKISLTELATVLKSMGS-----SYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG-AAGEAELREAFDLYDQDKN 105 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~~-----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~ 105 (163)
-||.++..|...+.+.+.. ......+..++...-..- ...+..++...+..... ......+..++... .-|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AAD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hcc
Confidence 3677888887777666532 223444555554442210 02345666666655443 12222344444444 234
Q ss_pred CcccHHH
Q 031226 106 GLISAEE 112 (163)
Q Consensus 106 g~i~~~e 112 (163)
|.++..|
T Consensus 92 G~~~~~E 98 (111)
T cd07176 92 GEVDPEE 98 (111)
T ss_pred CCCCHHH
Confidence 6666655
No 186
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=57.49 E-value=23 Score=22.02 Aligned_cols=80 Identities=26% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-CchHHHHHHHHHHhcCCCCCc
Q 031226 31 NKDGKISLTELATVLKSM--GSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG-AAGEAELREAFDLYDQDKNGL 107 (163)
Q Consensus 31 ~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~ 107 (163)
.-||.++..|...+...+ ....+......+...++......+++.+++..+..... ......+..++..... ||.
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~ 112 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGE 112 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCC
Confidence 458889988888776655 23344555666666665444446777888776665332 2223345556666544 455
Q ss_pred ccHHH
Q 031226 108 ISAEE 112 (163)
Q Consensus 108 i~~~e 112 (163)
++..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 55555
No 187
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=57.45 E-value=17 Score=19.40 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHH
Q 031226 35 KISLTELATVLKSMGSSYKEEELVRV 60 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~~~~~~~~~~~l 60 (163)
.|+.++|..+|.......+..++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47889999999988888888887763
No 188
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=54.98 E-value=40 Score=19.71 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=9.4
Q ss_pred CCccchHHHHHHhhccCC
Q 031226 141 DGNVNFEEFRSMMTTSLK 158 (163)
Q Consensus 141 ~g~i~~~ef~~~l~~~~~ 158 (163)
+|.|+.+||..-+...+.
T Consensus 37 ~~~i~~EeF~~~Lq~~ln 54 (92)
T smart00549 37 NGTITAEEFTSRLQEALN 54 (92)
T ss_pred hCCCCHHHHHHHHHHHHc
Confidence 355555555555554443
No 189
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=54.91 E-value=32 Score=18.32 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=24.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 106 GLISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 106 g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
-.+|.+|+...+..++...+..++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578888888888888777777777777666
No 190
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=54.60 E-value=43 Score=26.08 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh---cC-----CCCCccchHHHHHHhhccC
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPV---DA-----DGDGNVNFEEFRSMMTTSL 157 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l~~~~ 157 (163)
.-+|..+-....+.++.-.|..++++.|..-++..+..++..+ +. ...+.++.+-|.+++...+
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI 160 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSI 160 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccch
Confidence 4467777656678899999999999998888877777666555 21 2235578888888776543
No 191
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=54.01 E-value=56 Score=20.90 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=25.5
Q ss_pred HHHHHHhCCCCCHHHHHHHh----------hhhcCCCCCccchHHHHHHh
Q 031226 114 NLVLNRLGIKCSVDGCVAMI----------KPVDADGDGNVNFEEFRSMM 153 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~----------~~~d~~~~g~i~~~ef~~~l 153 (163)
.+-+..+|...+++++..++ ..+-.+..|..+...|.+|+
T Consensus 96 ~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 34445567777777777666 11224567888888777664
No 192
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=53.60 E-value=58 Score=20.98 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKS 47 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 47 (163)
..+..+.......|..+.++||.++++.++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 55666677777777777788888888886544
No 193
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=52.90 E-value=17 Score=20.56 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=14.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 105 NGLISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 105 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
.|+||++++..++... .++.+.+..++..+
T Consensus 19 ~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPED--DLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCcc--CCCHHHHHHHHHHH
Confidence 4666666666666422 24556666666655
No 194
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=52.81 E-value=35 Score=22.85 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhC
Q 031226 29 DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLD 65 (163)
Q Consensus 29 d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d 65 (163)
..+.+|+++.+++...+..-+...+.+++.++...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3578999999999999888777788899988887654
No 195
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=50.43 E-value=37 Score=21.48 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=37.3
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHhhhhcCCCCC-ccchHHHHHH
Q 031226 104 KNGLISAEELNLVLNRLG---------IKCSVDGCVAMIKPVDADGDG-NVNFEEFRSM 152 (163)
Q Consensus 104 ~~g~i~~~e~~~~~~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 152 (163)
++..||.+||.+++..-. +.++.+++..+...+...+.+ .+++.|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 667899999999887632 236888999988888776555 4888887765
No 196
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=49.48 E-value=63 Score=25.27 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=42.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh---CC-----CCCCcccHHHHHHHHH
Q 031226 23 KIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDL---DT-----DKDGFISLSEFETICR 82 (163)
Q Consensus 23 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~g~i~~~ef~~~~~ 82 (163)
-+|..+....++.+++-.|..+|++.|...+...+...++.+ ++ ..-+.++.+.|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 357777555579999999999999999887766666655544 32 1234788888887643
No 197
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=49.16 E-value=54 Score=24.27 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHh
Q 031226 105 NGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 153 (163)
Q Consensus 105 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 153 (163)
.|.||++|-...++..-.....+.++.+++.+ .|+.+||.+.+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~l------g~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYL------GISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHh------CCCHHHHHHHh
Confidence 35566666555555433333345555555555 35566665543
No 198
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=48.99 E-value=55 Score=21.81 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=32.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 031226 30 ANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLS 75 (163)
Q Consensus 30 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ 75 (163)
.+.+|++..+++...++.-+...+.+.+.++...-| .++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 578999999999998876556688899988876543 4444443
No 199
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=48.86 E-value=86 Score=23.64 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 71 FISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 71 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
.+++..++-...........+....++...+.+++|.....++.+++...
T Consensus 74 ~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred cchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 57777776665555544456678888999999999999999988877653
No 200
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=48.83 E-value=11 Score=22.26 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=11.0
Q ss_pred CCccchHHHHHHhhccCCCCC
Q 031226 141 DGNVNFEEFRSMMTTSLKPGP 161 (163)
Q Consensus 141 ~g~i~~~ef~~~l~~~~~~~~ 161 (163)
+|.|+.+||..-+...+..++
T Consensus 38 ~~~i~~EeF~~~Lq~~lns~p 58 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQEELNSSP 58 (96)
T ss_dssp TTSS-HHHHHHHHHHHCTSS-
T ss_pred cCCCCHHHHHHHHHHHhcCCC
Confidence 456666666666665554433
No 201
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=48.69 E-value=45 Score=18.26 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=16.4
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHhhC
Q 031226 37 SLTELATVLKSMGSSYKEEELVRVMEDLD 65 (163)
Q Consensus 37 ~~~ef~~~l~~~~~~~~~~~~~~l~~~~d 65 (163)
+-.++..++...+..++..++..+++.-+
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 34455555555566666666666665533
No 202
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=48.03 E-value=64 Score=22.17 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=56.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CC-chH-HHH
Q 031226 20 EMQKIFNQFDANKDGKISLTELATVLKSMG---SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GA-AGE-AEL 93 (163)
Q Consensus 20 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~-~~~-~~~ 93 (163)
++-.+....-..+.|.|+..|+...+.... ..++.+++.+.+..+..-+.| +....|-.-...+. .+ ... ...
T Consensus 98 qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~~ 176 (223)
T PF04157_consen 98 QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKDQ 176 (223)
T ss_dssp HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HHH
T ss_pred HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHHH
Confidence 344444444445556777777777777643 235667777777777665555 43333331111111 11 122 445
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhh
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKP 135 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 135 (163)
..+.........|.+|..++..-+. ++...+.+.+..
T Consensus 177 ~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~ 213 (223)
T PF04157_consen 177 SRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEE 213 (223)
T ss_dssp HHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHH
Confidence 5555555345668888888765553 444444444443
No 203
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=47.79 E-value=58 Score=19.27 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 031226 36 ISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRT 83 (163)
Q Consensus 36 i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 83 (163)
+...++..++..+...++++++..+...+-..+...++-.+....+..
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~ 67 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITR 67 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 677777777777777788888777777764333333344444444433
No 204
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.54 E-value=31 Score=26.14 Aligned_cols=56 Identities=25% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHH
Q 031226 93 LREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRS 151 (163)
Q Consensus 93 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 151 (163)
..++|-.+.. -+|.|+...-+.-|- ...+....+-.+|+..|.+++|.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4555554432 356666665544442 2346677788999999999999999999953
No 205
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=46.03 E-value=68 Score=19.58 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHH
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRS 151 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 151 (163)
+|-.....++..+|.+++..++...|.......+..++..+. ..+++|.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 444444566777999999999999999888888888888883 245666665
No 206
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.37 E-value=43 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=16.5
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 102 QDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 102 ~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
.+.+|.+..+++.+.....+..++.+++..+...-
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 35666666666666665555555666666655543
No 207
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=43.89 E-value=56 Score=18.46 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhhhhcCCC-CCccchHHHHHHh
Q 031226 110 AEELNLVLNRLGIKCSVDGCVAMIKPVDADG-DGNVNFEEFRSMM 153 (163)
Q Consensus 110 ~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l 153 (163)
..++...+ .|.+++.+.+...+..++.+. =+.++.+|+.++|
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 55555555 455667777777777775442 3567777777764
No 208
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=42.54 E-value=1.2e+02 Score=21.57 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCCCcccHHHHHHHHHhcC--CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHH----HHHHHHhc
Q 031226 31 NKDGKISLTELATVLKSMG--SSYKEEE---LVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAEL----REAFDLYD 101 (163)
Q Consensus 31 ~~~g~i~~~ef~~~l~~~~--~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~----~~~f~~~d 101 (163)
.-||.++..|.. +.+.+. ..++.+. +..+|+.- .....++.+|+..+..... ...+.+ ..+|..-=
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~-~r~~l~~~lL~~l~~vA~ 141 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCG-GRFDLLRMFLEIQIQAAF 141 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 458899999987 334331 3345555 55555544 3445889999988876542 222332 33444432
Q ss_pred CCCCCcccHHHH---HHHHHHhCCCCCHHHHHHHhhh
Q 031226 102 QDKNGLISAEEL---NLVLNRLGIKCSVDGCVAMIKP 135 (163)
Q Consensus 102 ~~~~g~i~~~e~---~~~~~~~~~~~~~~~~~~~~~~ 135 (163)
-||.++..|- ..+...+ .++..+...+...
T Consensus 142 --ADG~l~~~E~~~L~~Ia~~L--gis~~df~~~~~~ 174 (267)
T PRK09430 142 --ADGSLHPNERQVLYVIAEEL--GFSRFQFDQLLRM 174 (267)
T ss_pred --hcCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 4578888883 2233333 3466666655444
No 209
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=42.51 E-value=7.3 Score=17.48 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=11.7
Q ss_pred HHhhhhcCCCCCccchHH
Q 031226 131 AMIKPVDADGDGNVNFEE 148 (163)
Q Consensus 131 ~~~~~~d~~~~g~i~~~e 148 (163)
.++..-|.|++-+|+.++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 455666777777776654
No 210
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.41 E-value=64 Score=21.50 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCCchHHHHHHHH
Q 031226 66 TDKDGFISLSEFETICRTSSGAAGEAELREAF 97 (163)
Q Consensus 66 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 97 (163)
.+.+|.++.++++..+......-..+.+.++-
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 35566677776666655322222334444333
No 211
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.93 E-value=38 Score=25.70 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHH
Q 031226 92 ELREAFDLYDQDKNGLISAEEL 113 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~ 113 (163)
.+-.+|+..|.|.+|.++-+||
T Consensus 478 vlgkiwklad~d~dg~ld~eef 499 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEF 499 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHH
Confidence 4556666666666666666665
No 212
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=41.78 E-value=1e+02 Score=20.27 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 74 LSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 74 ~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
...|+.-...-..-.....+..++..+-..+...++..+|...|- .|+..|++++......+
T Consensus 68 ~r~~iv~~I~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 68 HRPFIVKYIVDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp THHHHHHHHHTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 334443333333333456677777777655556788888876663 56778888887665554
No 213
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=41.24 E-value=53 Score=16.94 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=24.3
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 031226 31 NKDGKISLTELATVLKSMGSSYKEEELVRVME 62 (163)
Q Consensus 31 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~ 62 (163)
-..|.|+..||..-+.....-.+..++..++.
T Consensus 19 ~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 19 FAEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 36789999999988877666667777776653
No 214
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=39.91 E-value=1.1e+02 Score=22.75 Aligned_cols=10 Identities=40% Similarity=0.401 Sum_probs=4.4
Q ss_pred HHHHHHHHhc
Q 031226 92 ELREAFDLYD 101 (163)
Q Consensus 92 ~~~~~f~~~d 101 (163)
.+.++|..+.
T Consensus 111 ~lae~F~lMa 120 (351)
T CHL00185 111 LLAEGFLLMS 120 (351)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 215
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=39.50 E-value=1.3e+02 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=30.3
Q ss_pred hhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 031226 13 QLI-VSREEMQKIFNQFDANKDGKISLTELATVLKSMG 49 (163)
Q Consensus 13 ~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 49 (163)
.++ .+..-+.-+|+.+|.++=-.|+.++++.++.-++
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 355 6667778889999988888999999999988763
No 216
>PRK10945 gene expression modulator; Provisional
Probab=39.00 E-value=71 Score=17.73 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 72 ISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 72 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
.+..+|+.-++...+ .+.+..+|... ...++.+|+..+..+.
T Consensus 6 Mtk~dyL~~fRrcss---~eTLEkvie~~----~~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 6 LTKTDYLMRLRRCQT---IDTLERVIEKN----KYELSDDELAVFYSAA 47 (72)
T ss_pred ccHHHHHHHHHhcCc---HHHHHHHHHHh----hccCCHHHHHHHHHHH
Confidence 466777777776655 56677777653 3456667776666554
No 217
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.97 E-value=55 Score=16.66 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=18.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCC
Q 031226 33 DGKISLTELATVLKSMGSSYKEEELVRVMEDLDT 66 (163)
Q Consensus 33 ~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~ 66 (163)
+|.++..+|+..+. .+...+-.++..+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 66777777777763 455555566666654
No 218
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.92 E-value=1.1e+02 Score=25.12 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC--------CCchHHHHHHHHHHhcCCCCCc
Q 031226 36 ISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS--------GAAGEAELREAFDLYDQDKNGL 107 (163)
Q Consensus 36 i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~--------~~~~~~~~~~~f~~~d~~~~g~ 107 (163)
++.+|+. .....-+..++-+|..+|. .+|.++.+++..+..... .....+....++...|.+..|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 5555555 2222334455555555555 555565555555443321 1112233444555566666666
Q ss_pred ccHHHHHHHHH
Q 031226 108 ISAEELNLVLN 118 (163)
Q Consensus 108 i~~~e~~~~~~ 118 (163)
+..+.+..++.
T Consensus 78 ~~~~~~~~ll~ 88 (646)
T KOG0039|consen 78 ITNEDLEILLL 88 (646)
T ss_pred eeecchhHHHH
Confidence 66666555443
No 219
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=38.36 E-value=1.1e+02 Score=22.68 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 031226 92 ELREAFDLYD 101 (163)
Q Consensus 92 ~~~~~f~~~d 101 (163)
.+.++|..+.
T Consensus 115 ~lae~F~lMa 124 (355)
T PRK13654 115 LLAELFQLMA 124 (355)
T ss_pred HHHHHHHHHh
Confidence 3444554443
No 220
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=38.28 E-value=13 Score=26.47 Aligned_cols=67 Identities=13% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031226 52 YKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLN 118 (163)
Q Consensus 52 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~ 118 (163)
.+++-+..||..+..-...+|-++|....................|+.+-.|-.--|+.+.++..+.
T Consensus 18 vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~ 84 (321)
T KOG0148|consen 18 VTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA 84 (321)
T ss_pred hHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc
Confidence 4455555666666555555566665554443322111122233334444333344444444444443
No 221
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=38.11 E-value=67 Score=26.68 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-------------CC
Q 031226 20 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS-------------SG 86 (163)
Q Consensus 20 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-------------~~ 86 (163)
.+.-.++.||+..+|.|..-.|+..+-.+.....++....+|+..-..+.. ++-..|-.++..+ ..
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 345668999999999999999999999888888888899999988554433 4455554444322 12
Q ss_pred CchHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031226 87 AAGEAELREAFDLYDQDKNGLISAEELNLVL 117 (163)
Q Consensus 87 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~ 117 (163)
..-+.-++..|... ++.-.|....|...+
T Consensus 550 sNvepsvrsCF~~v--~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 550 SNIEPSVRSCFQFV--NNKPEIEAALFLDWM 578 (966)
T ss_pred CCCChHHHHHHHhc--CCCCcchHHHHHHHh
Confidence 22233466667622 344456666665544
No 222
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=36.24 E-value=72 Score=17.05 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhC
Q 031226 94 REAFDLYDQDKNGLISAEELNLVLNRLG 121 (163)
Q Consensus 94 ~~~f~~~d~~~~g~i~~~e~~~~~~~~~ 121 (163)
..+++.+..+....++.+|...-....|
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 3344455544445555555555555544
No 223
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=36.19 E-value=1.3e+02 Score=22.33 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031226 48 MGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVL 117 (163)
Q Consensus 48 ~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~ 117 (163)
.|.......+..+++ .|.||-+|=+..+.........+.+..+++.++ ||.+||..++
T Consensus 285 fG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 285 FGFGRATDHASIDIR------SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 455444444444443 688999988888888655555577888888887 6677776654
No 224
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=36.12 E-value=95 Score=18.36 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHH
Q 031226 35 KISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELN 114 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~ 114 (163)
.|+..+++.+.+.+| +++.+++.+-.... .+ ..+.-..++.. |-......=+...+.
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~--~d---~~Eq~~qmL~~----------------W~~~~G~~a~~~~Li 73 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNP--QD---TAEQKVQLLRA----------------WYQSHGKTGAYRTLI 73 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCC--CC---hHHHHHHHHHH----------------HHHHhCCCchHHHHH
Confidence 466667777777765 46666666543221 11 13333333333 222222222346666
Q ss_pred HHHHHhCCCCCHHHHHHHhh
Q 031226 115 LVLNRLGIKCSVDGCVAMIK 134 (163)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~ 134 (163)
..|+..+.....+.++.++.
T Consensus 74 ~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 74 KTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHccchhHHHHHHHHHH
Confidence 77777766666666666544
No 225
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=35.94 E-value=63 Score=16.27 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMED 63 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~ 63 (163)
.....|+..|.. +.+.+..+...+...+| ++...+...|..
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 667777888777 45777888888777765 455666666643
No 226
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=35.17 E-value=90 Score=23.09 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHhh--cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 031226 16 VSREEMQKIFNQF--DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICR 82 (163)
Q Consensus 16 ~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 82 (163)
....++..+...+ |.|..-.+--++|......+.......-++-|.+.|...=+|.+-|.|...-+.
T Consensus 38 ~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk 106 (351)
T CHL00185 38 SNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLK 106 (351)
T ss_pred hhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc
Confidence 4445555555444 445555555666655443332222333444455555555556666666555443
No 227
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=34.76 E-value=1.1e+02 Score=22.30 Aligned_cols=89 Identities=18% Similarity=0.333 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHhh--cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHH
Q 031226 16 VSREEMQKIFNQF--DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAEL 93 (163)
Q Consensus 16 ~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 93 (163)
....+++.+...+ |.|..-.+--++|......+.......-++-+.+.|...=+|.+-|.|...-+... ...+
T Consensus 22 ~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----nP~l 96 (323)
T cd01047 22 KNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT-----NPVV 96 (323)
T ss_pred hhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC-----CcHH
Confidence 4455666666555 56666677777777755554334444555666666666667777777776655442 2357
Q ss_pred HHHHHHhcCC---CCCccc
Q 031226 94 REAFDLYDQD---KNGLIS 109 (163)
Q Consensus 94 ~~~f~~~d~~---~~g~i~ 109 (163)
.++|..+..| +.|.|.
T Consensus 97 ae~F~lMaRDEARHAGFlN 115 (323)
T cd01047 97 AELFRLMARDEARHAGFLN 115 (323)
T ss_pred HHHHHHHhhhHHHHhhhHH
Confidence 7788777555 345543
No 228
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=34.72 E-value=24 Score=18.09 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=11.3
Q ss_pred HHhhcCCCCCcccHHHHHHHHH
Q 031226 25 FNQFDANKDGKISLTELATVLK 46 (163)
Q Consensus 25 f~~~d~~~~g~i~~~ef~~~l~ 46 (163)
|+.+...+++.+|..|+...+.
T Consensus 12 ~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 12 PDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHTTS-BEHHHHHHTST
T ss_pred HHHHHHcCCCCCCHHHHHHHcC
Confidence 3444333356777777666544
No 229
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=34.67 E-value=96 Score=18.02 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC---CCchHHHHHHHHHHhcCCCCCc
Q 031226 32 KDGKISLTELATVLKSMG-SSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS---GAAGEAELREAFDLYDQDKNGL 107 (163)
Q Consensus 32 ~~g~i~~~ef~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~ 107 (163)
-||.++..|...+-+.+. ..........+...+........++.+|...+.... .......+..+|...- .||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--ADG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--ADGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCC
Confidence 367777777555433322 122233333333333222222256777777766532 2222334444555543 3567
Q ss_pred ccHHH
Q 031226 108 ISAEE 112 (163)
Q Consensus 108 i~~~e 112 (163)
++..|
T Consensus 90 ~~~~E 94 (106)
T cd07316 90 LSEAE 94 (106)
T ss_pred CCHHH
Confidence 77766
No 230
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.55 E-value=1.3e+02 Score=19.36 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred HHHHhhcCCCCCcccHHHHHH---HHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCchHHHHHHHHH
Q 031226 23 KIFNQFDANKDGKISLTELAT---VLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS-GAAGEAELREAFD 98 (163)
Q Consensus 23 ~~f~~~d~~~~g~i~~~ef~~---~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~ 98 (163)
-+|+... -||.++..|... ++.. .+.++...+..+......-+...+++..|...+.... .....+.+..+|.
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mwe 110 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWE 110 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5677774 456677666444 4433 4567888888888887666667799999988887544 4344556666777
Q ss_pred HhcCCCCCcccHHHHHHHHH
Q 031226 99 LYDQDKNGLISAEELNLVLN 118 (163)
Q Consensus 99 ~~d~~~~g~i~~~e~~~~~~ 118 (163)
..- .||.++..|-.-+.+
T Consensus 111 Ia~--ADg~l~e~Ed~vi~R 128 (148)
T COG4103 111 IAY--ADGELDESEDHVIWR 128 (148)
T ss_pred HHH--ccccccHHHHHHHHH
Confidence 763 456677666444443
No 231
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=34.33 E-value=77 Score=23.48 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHhh--cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 16 VSREEMQKIFNQF--DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 16 ~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
....++..+...+ |.|..-.+--++|......+.......-++-|.+.|...=+|.+-|.|...-+
T Consensus 42 ~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrl 109 (355)
T PRK13654 42 PNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRL 109 (355)
T ss_pred hhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhc
Confidence 3344455554444 44444455555555544333322333334444455544445555555555444
No 232
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=33.92 E-value=1.2e+02 Score=22.26 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHHHHHHhh--cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHH
Q 031226 18 REEMQKIFNQF--DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELRE 95 (163)
Q Consensus 18 ~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 95 (163)
..++..+...+ |.|..-.+--++|......+.......-++-|.+.|...=+|.+-|.|...-+... ...+.+
T Consensus 34 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~-----~P~lae 108 (337)
T TIGR02029 34 ENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNR-----DPVVAE 108 (337)
T ss_pred HHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCC-----ChHHHH
Confidence 33444444333 33334444444444433322222222233334444443334444444443333221 123555
Q ss_pred HHHHhcCC
Q 031226 96 AFDLYDQD 103 (163)
Q Consensus 96 ~f~~~d~~ 103 (163)
+|..+..|
T Consensus 109 ~F~~MaRD 116 (337)
T TIGR02029 109 LFQLMARD 116 (337)
T ss_pred HHHHHhhh
Confidence 55555433
No 233
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=33.55 E-value=95 Score=19.78 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhhhhcC
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMIKPVDA 138 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~ 138 (163)
.|.+++..+.......+|++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 5777788777766777888888888888865
No 234
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=33.35 E-value=1.1e+02 Score=18.49 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhcc
Q 031226 96 AFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 156 (163)
Q Consensus 96 ~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 156 (163)
+|-.....++..+|.+++..+++..|.......+..+++.+. ..++++.+.--...
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~k 61 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKEK 61 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHhh
Confidence 344444466778999999999999999888888888888883 24677777765554
No 235
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=33.28 E-value=82 Score=16.77 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAM 132 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~ 132 (163)
.+.+++..+.+..|+.+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4578889999999999999988763
No 236
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=33.20 E-value=1.2e+02 Score=18.82 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHHh-CCCCCHHHHHHH
Q 031226 108 ISAEELNLVLNRL-GIKCSVDGCVAM 132 (163)
Q Consensus 108 i~~~e~~~~~~~~-~~~~~~~~~~~~ 132 (163)
|+.+.+..++... |..+|..++..+
T Consensus 51 id~e~~y~l~~~~d~~~LT~~Qi~Yl 76 (122)
T PF06648_consen 51 IDVEDMYNLFGAVDGLKLTRSQIDYL 76 (122)
T ss_pred CCHHHHHHHHhcccHhhcCHHHHHHH
Confidence 4444444444333 233444443333
No 237
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=33.17 E-value=1.8e+02 Score=21.38 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=44.1
Q ss_pred hcCCCCCHHHHHHHHHhh--CCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC
Q 031226 47 SMGSSYKEEELVRVMEDL--DTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKC 124 (163)
Q Consensus 47 ~~~~~~~~~~~~~l~~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~ 124 (163)
.+......++++.++..+ |.+..+-+--++|..............-+..+-+.+-..-+|.+=+.|+..-++..
T Consensus 17 ~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~---- 92 (323)
T cd01047 17 ALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT---- 92 (323)
T ss_pred hcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC----
Confidence 455666677777777776 44444555556665544432221111122222223333446766666665555432
Q ss_pred CHHHHHHHhhhhcCC
Q 031226 125 SVDGCVAMIKPVDAD 139 (163)
Q Consensus 125 ~~~~~~~~~~~~d~~ 139 (163)
...+.++|..+..|
T Consensus 93 -nP~lae~F~lMaRD 106 (323)
T cd01047 93 -NPVVAELFRLMARD 106 (323)
T ss_pred -CcHHHHHHHHHhhh
Confidence 24455556555443
No 238
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=33.08 E-value=77 Score=17.47 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=14.5
Q ss_pred cHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 031226 73 SLSEFETICRTSSGAAGEAELREAFDLYD 101 (163)
Q Consensus 73 ~~~ef~~~~~~~~~~~~~~~~~~~f~~~d 101 (163)
+..+|+.-++...+ .+.+.++|....
T Consensus 2 tk~eyLlkfRkcss---~eTLEkv~e~~~ 27 (71)
T PRK10391 2 TVQDYLLKFRKISS---LESLEKLFDHLN 27 (71)
T ss_pred cHHHHHHHHHhcCc---HHHHHHHHHHhh
Confidence 34555555555443 556676776654
No 239
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.96 E-value=69 Score=15.86 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 031226 109 SAEELNLVLNRLGIKCSVDGC 129 (163)
Q Consensus 109 ~~~e~~~~~~~~~~~~~~~~~ 129 (163)
+.+++..+.+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888888888887764
No 240
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=32.55 E-value=1.1e+02 Score=25.33 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 92 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
....+|+..-..+...+..+.+..++ .+++++..+..++...+..|++..|.+.+..
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 46667877776666677666665544 6788888888887766666999998887654
No 241
>PHA03155 hypothetical protein; Provisional
Probab=32.19 E-value=1.2e+02 Score=18.51 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHH
Q 031226 36 ISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNL 115 (163)
Q Consensus 36 i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~ 115 (163)
.+.+|+..-+..|. +....+.+-+..-...+++.++-.+=-.++..+.+.....-.+.+.......-.+.+|.+++..
T Consensus 8 ~tvEeLaaeL~kL~--~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~~~vTk~q~~~ 85 (115)
T PHA03155 8 ADVEELEKELQKLK--IENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLLPLVSKNQCME 85 (115)
T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 44555555544432 1223333333332223445555544444333333222233334444444445567777777777
Q ss_pred HHHHhC
Q 031226 116 VLNRLG 121 (163)
Q Consensus 116 ~~~~~~ 121 (163)
++..+-
T Consensus 86 al~~lt 91 (115)
T PHA03155 86 AIADIK 91 (115)
T ss_pred HHhcCe
Confidence 777654
No 242
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=31.87 E-value=2.6e+02 Score=22.20 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHH---------HhhhhcCCCCCccchHHHHHHhhccCCC
Q 031226 91 AELREAFDLYDQDKNGLISAEELNLVLNRLG--IKCSVDGCVA---------MIKPVDADGDGNVNFEEFRSMMTTSLKP 159 (163)
Q Consensus 91 ~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~--~~~~~~~~~~---------~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 159 (163)
+.++++|+.-| .-...++.+.|.+++.... ....++.+.. -|+.+-....+.|+.++|++.-....+-
T Consensus 368 DA~RELYrYSd-yLPK~L~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass~m~L 446 (624)
T PF05819_consen 368 DAMRELYRYSD-YLPKNLSLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASSSMHL 446 (624)
T ss_pred HHHHHHHHhhh-ccccccCHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHhhccc
Confidence 34777777655 4556788898888886432 1122333221 2344434567899999999988776543
No 243
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=31.36 E-value=1.1e+02 Score=22.87 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 031226 25 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 25 f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 84 (163)
...+|+.+.|.++..-...++.-+....-.+.+..||... .+.+|.+.+-.|..+++..
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH
Confidence 4567888999999888888887776666678888898887 4556766666666665543
No 244
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=31.28 E-value=93 Score=18.17 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=7.1
Q ss_pred HHHHhCCCCCHHHHHHHhhhh
Q 031226 116 VLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (163)
+++.-|..++..++..++...
T Consensus 17 lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 17 LLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHCCT----HHHHHHHHHHH
T ss_pred HHHHcCeeecHHHHHHHHHHH
Confidence 333334444444444444433
No 245
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=30.90 E-value=1.7e+02 Score=21.76 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=3.8
Q ss_pred CCcccHHHH
Q 031226 105 NGLISAEEL 113 (163)
Q Consensus 105 ~g~i~~~e~ 113 (163)
+|.+=+.|+
T Consensus 93 SGflLYKEl 101 (357)
T PLN02508 93 SGFLLYKEL 101 (357)
T ss_pred ccchHHHHH
Confidence 444444443
No 246
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=30.75 E-value=1.3e+02 Score=21.49 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCcccHHHHHHHHHhcC--CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 69 DGFISLSEFETICRTSS--GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 69 ~g~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
||.|+-.|.. ....+. .....+.-..+...|........+..++...+...
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSV 121 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 5667777765 323221 11112332333444444444556666666655443
No 247
>PHA02105 hypothetical protein
Probab=30.00 E-value=93 Score=16.41 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHhcC---CCCCHHHHHHHHHhhCCCCC--CcccHHHHHHHHHh
Q 031226 35 KISLTELATVLKSMG---SSYKEEELVRVMEDLDTDKD--GFISLSEFETICRT 83 (163)
Q Consensus 35 ~i~~~ef~~~l~~~~---~~~~~~~~~~l~~~~d~~~~--g~i~~~ef~~~~~~ 83 (163)
.++.++|..++-.-. .++..+.++++-..+....- -+++|+||...+..
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 356677777765532 23445555555555543322 25778888766544
No 248
>COG5562 Phage envelope protein [General function prediction only]
Probab=30.00 E-value=36 Score=21.49 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=14.5
Q ss_pred hhcCCCCCccchHHHHHHhhc
Q 031226 135 PVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 135 ~~d~~~~g~i~~~ef~~~l~~ 155 (163)
....+..|+.+|+||+..+.+
T Consensus 80 al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 80 ALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHhcCCccHHHHHHHHHh
Confidence 334456788888888877654
No 249
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=29.19 E-value=82 Score=15.55 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 111 EELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 111 ~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
+|....+..+|+ +..++..+...... ...++.++.++.-.+
T Consensus 4 ~d~~~AL~~LGy--~~~e~~~av~~~~~--~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 4 EDALEALISLGY--SKAEAQKAVSKLLE--KPGMDVEELIKQALK 44 (47)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHHHH--STTS-HHHHHHHHHC
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHhhc--CCCCCHHHHHHHHHh
Confidence 456667777765 67778777777754 445567777665443
No 250
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=28.66 E-value=1.6e+02 Score=20.69 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=6.8
Q ss_pred CcccHHHHHHHHHhc
Q 031226 70 GFISLSEFETICRTS 84 (163)
Q Consensus 70 g~i~~~ef~~~~~~~ 84 (163)
|+++..||-..+...
T Consensus 40 ~klsk~Efd~~~~~~ 54 (252)
T PF12767_consen 40 GKLSKEEFDKECRRI 54 (252)
T ss_pred hccCHHHHHHHHHHH
Confidence 444444444444443
No 251
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=28.34 E-value=1.4e+02 Score=18.07 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=21.6
Q ss_pred HHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 117 LNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
+.-+...++.+|-+.+....+.-.+|.|++...+.++.
T Consensus 59 ~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 59 FGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLK 96 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 33334445666666666666555666666655555443
No 252
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=28.17 E-value=71 Score=14.48 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=8.0
Q ss_pred CCcccHHHHHHHHH
Q 031226 105 NGLISAEELNLVLN 118 (163)
Q Consensus 105 ~g~i~~~e~~~~~~ 118 (163)
.|.|+.+++..+..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35566666655554
No 253
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=28.13 E-value=94 Score=17.62 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCCCHHHHHH
Q 031226 112 ELNLVLNRLGIKCSVDGCVA 131 (163)
Q Consensus 112 e~~~~~~~~~~~~~~~~~~~ 131 (163)
|+..+++.+|..+++++..-
T Consensus 21 EIL~ALrkLge~Ls~eE~~F 40 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAF 40 (78)
T ss_dssp HHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 35667888899999888543
No 254
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.91 E-value=60 Score=14.61 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=5.1
Q ss_pred ccHHHHHHHHH
Q 031226 108 ISAEELNLVLN 118 (163)
Q Consensus 108 i~~~e~~~~~~ 118 (163)
|+.+||+.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55666665553
No 255
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=27.90 E-value=1.3e+02 Score=17.35 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHh
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMI 133 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~ 133 (163)
|+.+++..+.+-....++++++..+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35556666666555666666654443
No 256
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=26.70 E-value=1.6e+02 Score=17.92 Aligned_cols=13 Identities=15% Similarity=0.205 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHhh
Q 031226 52 YKEEELVRVMEDL 64 (163)
Q Consensus 52 ~~~~~~~~l~~~~ 64 (163)
-+.+++..++...
T Consensus 79 ~~~dElrai~~~~ 91 (112)
T PRK14981 79 ETRDELRAIFAKE 91 (112)
T ss_pred CCHHHHHHHHHHh
Confidence 3455555555443
No 257
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.29 E-value=93 Score=20.95 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVME 62 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~ 62 (163)
.....++++|..+|+..=-.++-.++..+|...+.-.....++.+..
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 56688999999999998888999999999988776656665555443
No 258
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=26.05 E-value=1.1e+02 Score=22.46 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=6.7
Q ss_pred CCCCCHHHHHHHHHhh
Q 031226 49 GSSYKEEELVRVMEDL 64 (163)
Q Consensus 49 ~~~~~~~~~~~l~~~~ 64 (163)
.....+++++.++..+
T Consensus 29 d~s~~~~e~~A~l~E~ 44 (337)
T TIGR02029 29 DVSPVENEWDAMLAEM 44 (337)
T ss_pred CCchhHHHHHHHHHHH
Confidence 3333444444444443
No 259
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=25.99 E-value=1.9e+02 Score=18.73 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 031226 56 ELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR 119 (163)
Q Consensus 56 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 119 (163)
-++.++..-+.+.++.|++..|..+++.... +.+..-|- .+..+++.++++.++..
T Consensus 84 ~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG----dWIT~~~L----kh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 84 FLEHLLGGEDDSTNGLIDIGKFFDILQPKLG----DWITKNFL----KHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHHHhcCCcCCcccceeHHHHHHHHHHHhh----hHHHHHHH----hccchhhHHHHHHHHHH
Confidence 3444444333344677888888887766332 22333332 34566777777777654
No 260
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=25.64 E-value=1.2e+02 Score=16.85 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKS 47 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 47 (163)
++.......|... -..|++..+||..++..
T Consensus 13 e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 13 EEADGALIQLSQM--LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHHHHHHHHHHHH--HHcCcccHHHHHHHHHH
Confidence 3344444444444 45788888888888754
No 261
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=25.58 E-value=1.7e+02 Score=18.01 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=17.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 105 NGLISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 105 ~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
.|.++.+++..-+...+..++..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45566666655554445555555555544444
No 262
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.48 E-value=1.2e+02 Score=16.24 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 031226 18 REEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC 81 (163)
Q Consensus 18 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 81 (163)
...+..+.... .+.+|.++..++...+.. .+..++...=|.-++.+|+..+
T Consensus 7 ~~~l~~ll~~~-~~~~g~v~ls~l~~~~~~------------~~~~f~~~~yG~~~l~~ll~~~ 57 (74)
T PF12872_consen 7 KKLLRELLESQ-KGEDGWVSLSQLGQEYKK------------KYPDFDPRDYGFSSLSELLESL 57 (74)
T ss_dssp HHHHHHHHHHT-CTTTSSEEHHHHHHHHHH------------HHTT--TCCTTSSSHHHHHHT-
T ss_pred HHHHHHHHHhC-cCCCceEEHHHHHHHHHH------------HCCCCCccccCCCcHHHHHHhC
Confidence 34445555333 344667888888877765 2345666666777777777543
No 263
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=25.47 E-value=2.1e+02 Score=21.27 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHhh--cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHH
Q 031226 16 VSREEMQKIFNQF--DANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAEL 93 (163)
Q Consensus 16 ~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 93 (163)
....++..+...+ |.|..-.+--++|......+.......-++-|.+.|...=+|.+-|.|...-+... ...+
T Consensus 38 ~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----nP~l 112 (357)
T PLN02508 38 LDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT-----NPVV 112 (357)
T ss_pred hhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC-----ChHH
Confidence 4555666666555 55666677777777655554333344456666667766777888777776655442 2467
Q ss_pred HHHHHHhcCC
Q 031226 94 REAFDLYDQD 103 (163)
Q Consensus 94 ~~~f~~~d~~ 103 (163)
.++|..+..|
T Consensus 113 ae~F~lMaRD 122 (357)
T PLN02508 113 AEIFTLMSRD 122 (357)
T ss_pred HHHHHHhCch
Confidence 7888877655
No 264
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=25.27 E-value=3.5e+02 Score=21.44 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHh--cCCCC-CHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHH
Q 031226 35 KISLTELATVLKS--MGSSY-KEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAE 111 (163)
Q Consensus 35 ~i~~~ef~~~l~~--~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ 111 (163)
..+++||-.+|-. ++.+- .+..+.-+|+.+|..+=-.|++.++..++..... ..+..-. .-|.|+..
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e-----~~~e~~~-----~yG~is~a 174 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSE-----NAKELSA-----EYGNISSA 174 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHh-----hHHHHHH-----HcCCccHH
Confidence 5778999887765 44433 3456778999999888778999999999888632 1222222 34778877
Q ss_pred HHHHHHHHh------------CCCCCHHHHHHHhhhhcCCCCCccchHH
Q 031226 112 ELNLVLNRL------------GIKCSVDGCVAMIKPVDADGDGNVNFEE 148 (163)
Q Consensus 112 e~~~~~~~~------------~~~~~~~~~~~~~~~~d~~~~g~i~~~e 148 (163)
-.-.+++.+ |.+ .=++..+++ .|.++.|.|+.-+
T Consensus 175 S~gaI~R~ll~LE~qG~d~FFGEP--aldi~Dl~r-~~~~GrG~IniL~ 220 (502)
T PF05872_consen 175 SIGAIQRALLVLEQQGGDQFFGEP--ALDIEDLMR-TDADGRGVINILA 220 (502)
T ss_pred HHHHHHHHHHHHHHcchHhhCCCc--cCCHHHHhc-cCCCCCEEEEEEE
Confidence 776666543 211 112333333 4578888887433
No 265
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=24.91 E-value=1.7e+02 Score=17.87 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHh
Q 031226 103 DKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 153 (163)
Q Consensus 103 ~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 153 (163)
.+...|+++...+++.-. ..+..-+..+|.++.=-+-++||+.++
T Consensus 72 ~~~k~IskD~W~~~l~F~------~~~~~dls~Yde~~AWP~liDeFVe~~ 116 (117)
T PF03556_consen 72 KYKKAISKDTWNQFLDFF------KTVDEDLSNYDEEGAWPSLIDEFVEWL 116 (117)
T ss_dssp CT-SEEEHHHHHHHHHHH------HH-HCCHCC--TTSSS-HHHHHHHHHH
T ss_pred cCCcCcChhHHHHHHHHH------HhcCccccCCCCCCCCcHHHHHHHHHh
Confidence 344556666655544322 111233555555444445556665544
No 266
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=24.84 E-value=1.4e+02 Score=16.89 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=10.7
Q ss_pred CCcccHHHHHHHHHhc
Q 031226 33 DGKISLTELATVLKSM 48 (163)
Q Consensus 33 ~g~i~~~ef~~~l~~~ 48 (163)
||.++..|...+...+
T Consensus 13 DG~i~~~E~~~i~~~~ 28 (104)
T cd07177 13 DGRVDEEEIAAIEALL 28 (104)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6778877776665543
No 267
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=24.78 E-value=56 Score=18.50 Aligned_cols=16 Identities=0% Similarity=0.351 Sum_probs=6.4
Q ss_pred CCCCcccHHHHHHHHH
Q 031226 67 DKDGFISLSEFETICR 82 (163)
Q Consensus 67 ~~~g~i~~~ef~~~~~ 82 (163)
+..+.++..+-...+.
T Consensus 49 n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 49 NPNKYLTKTDARKLIK 64 (86)
T ss_dssp HTTS---HHHHHHHTT
T ss_pred CCCCcccHHHHHHHcc
Confidence 3445555555544444
No 268
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.76 E-value=1.4e+02 Score=18.34 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
-|.+|++.++...+..+++++++.++...
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35667788887777777888887776554
No 269
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.64 E-value=94 Score=28.40 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHhhhhcCCCCCccchHHHHHHhhc
Q 031226 86 GAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCS----VDGCVAMIKPVDADGDGNVNFEEFRSMMTT 155 (163)
Q Consensus 86 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 155 (163)
...+.+...++|..+|++..|.|...++..+++.+..++. ... +-+-..+....++.|++.+-...+.+
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 4455678999999999999999999999999988643321 111 22333333345555665555555444
No 270
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=23.33 E-value=1.8e+02 Score=17.49 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhhhhcCCCCCccchHHHHHHhhccC
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 157 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 157 (163)
||.+.+..++...+...+...+..+++.+ ...++++.+.-....+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL-----aGk~V~eli~~g~~kl 61 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL-----NGKNIDEVISKGKELM 61 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH-----cCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999888 2346788877666543
No 271
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=23.29 E-value=1.4e+02 Score=17.49 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=22.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHhhh
Q 031226 97 FDLYDQDKNGLISAEELNLVLNRLGIKC-SVDGCVAMIKP 135 (163)
Q Consensus 97 f~~~d~~~~g~i~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 135 (163)
|.....++...++++|-++.+...+-.+ +..++...++.
T Consensus 3 f~~~~~~G~y~l~f~eA~~AC~~~gA~lAs~~QL~~AW~~ 42 (95)
T cd03521 3 FVLELENGSQGLGLRAARQSCASLGARLASAAELRRAVVE 42 (95)
T ss_pred eeEeCCCCccccCHHHHHHHHHHcCCEeccHHHHHHHHHH
Confidence 3334456666677777777776665443 44555555544
No 272
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=22.92 E-value=2.3e+02 Score=21.14 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhcCCCCC----------HHHHHHHHHhhCCC-CCCcccHHHH--HHHHHhcCCCchHH
Q 031226 25 FNQFDANKDGKISLTELATVLKSMGSSYK----------EEELVRVMEDLDTD-KDGFISLSEF--ETICRTSSGAAGEA 91 (163)
Q Consensus 25 f~~~d~~~~g~i~~~ef~~~l~~~~~~~~----------~~~~~~l~~~~d~~-~~g~i~~~ef--~~~~~~~~~~~~~~ 91 (163)
|...+.+..+.++..+-..++..++.... ..++..++..+... +.|-|-...= ...+.-.....+-.
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~ 210 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCS 210 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcH
Confidence 44444444667889999998888765322 24556666655432 2333211110 00011111222234
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 92 ELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
.++.+|+.+-.-+.+++.-.=++..+...
T Consensus 211 di~~~~~~~~d~~~~~~~~Ri~R~~~~~~ 239 (342)
T cd07894 211 DIRYAFRYPFDLGRDFFFSRIVREGFQSV 239 (342)
T ss_pred HHHHHhhhccccCchHHHHHHHHHHHHHH
Confidence 55666665544444544444444444443
No 273
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=22.72 E-value=1.8e+02 Score=17.16 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 031226 107 LISAEELNLVLNRLGIKCSVDGCVAMIKPV 136 (163)
Q Consensus 107 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (163)
.|+.+++.++.+-....++++++..+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 466677776666655666666655444433
No 274
>PF14178 YppF: YppF-like protein
Probab=22.52 E-value=89 Score=16.69 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=11.5
Q ss_pred CCcccHHHHHHHHHhc
Q 031226 33 DGKISLTELATVLKSM 48 (163)
Q Consensus 33 ~g~i~~~ef~~~l~~~ 48 (163)
-|.|++.+++.+++.+
T Consensus 34 ~gei~i~eYR~lvreL 49 (60)
T PF14178_consen 34 QGEISINEYRNLVREL 49 (60)
T ss_pred hCcccHHHHHHHHHHH
Confidence 4677888887777764
No 275
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=22.25 E-value=2.2e+02 Score=18.16 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=30.3
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhC
Q 031226 31 NKDGKISLTELATVLKSMGSSYKEEELVRVMEDLD 65 (163)
Q Consensus 31 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~d 65 (163)
..+...+.+|+...|+..|...+...+-+.+..++
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 55667899999999999999999999988888775
No 276
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=21.96 E-value=3e+02 Score=19.56 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=20.5
Q ss_pred hhhhH-HhHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 031226 11 RKQLI-VSREEMQKIFNQFDANKDGKISLTELATVL 45 (163)
Q Consensus 11 ~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l 45 (163)
...|| .+.+.++++++.++ ..+|.++..++..-+
T Consensus 174 i~tLSySEleAv~~IL~~L~-~~egrlse~eLAerl 208 (251)
T TIGR02787 174 INTLSYSELEAVEHIFEELD-GNEGLLVASKIADRV 208 (251)
T ss_pred HHhccHhHHHHHHHHHHHhc-cccccccHHHHHHHH
Confidence 34455 66666777777772 225677776666654
No 277
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=21.95 E-value=3.2e+02 Score=23.48 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCCCCCcccHHHHHHHHHhcCCC-chHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhh-----hhcC
Q 031226 65 DTDKDGFISLSEFETICRTSSGA-AGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIK-----PVDA 138 (163)
Q Consensus 65 d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~-----~~d~ 138 (163)
|......|+..++..++...... .....+..-|.. |.-..+-+++++|..+.+.+-..-.-..+..... .-+.
T Consensus 154 d~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~ 232 (1267)
T KOG1264|consen 154 DQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDR 232 (1267)
T ss_pred cchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCC
Confidence 44455568888888887765522 222223233322 3345778999999998887643322222222211 1122
Q ss_pred CCCCccchHHHHHHhhccC
Q 031226 139 DGDGNVNFEEFRSMMTTSL 157 (163)
Q Consensus 139 ~~~g~i~~~ef~~~l~~~~ 157 (163)
-..-.|++.||.++|....
T Consensus 233 ~d~~vV~~~ef~rFL~~~Q 251 (1267)
T KOG1264|consen 233 PDASVVYLQEFQRFLIHEQ 251 (1267)
T ss_pred ccceEeeHHHHHHHHHhhh
Confidence 2235688999999987653
No 278
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.85 E-value=1.5e+02 Score=16.16 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSM----GSSYKEEELVRVMEDL 64 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~l~~~~ 64 (163)
.....+..+...++....--+-..+++.++..+ |...+++.+..+|+.|
T Consensus 20 ~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 20 QALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 445555666666654444445566666666553 5556677777777543
No 279
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=21.70 E-value=1.9e+02 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=8.5
Q ss_pred cchHHHHHHhhccC
Q 031226 144 VNFEEFRSMMTTSL 157 (163)
Q Consensus 144 i~~~ef~~~l~~~~ 157 (163)
++.++|+.-+....
T Consensus 69 ~~~~eF~~rVa~~~ 82 (125)
T PF10025_consen 69 FDLDEFLARVAERL 82 (125)
T ss_dssp -SHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHc
Confidence 67777777666543
No 280
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.52 E-value=1.3e+02 Score=15.00 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=20.2
Q ss_pred CCccc-HHHHHHHHHhcCCCCCHHHHHHHHHh
Q 031226 33 DGKIS-LTELATVLKSMGSSYKEEELVRVMED 63 (163)
Q Consensus 33 ~g~i~-~~ef~~~l~~~~~~~~~~~~~~l~~~ 63 (163)
.|.|+ ..++...|...|..+++..++.+++.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45565 55555666666777777777776654
No 281
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=21.50 E-value=1.8e+02 Score=16.76 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhh
Q 031226 108 ISAEELNLVLNRLGIKCSVDGCVAMIK 134 (163)
Q Consensus 108 i~~~e~~~~~~~~~~~~~~~~~~~~~~ 134 (163)
|+.+++..+.+-....++++++..+..
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~ 29 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAG 29 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 566666666666666666666554433
No 282
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.41 E-value=1.1e+02 Score=14.27 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.9
Q ss_pred chHHHHHHh
Q 031226 145 NFEEFRSMM 153 (163)
Q Consensus 145 ~~~ef~~~l 153 (163)
+.+++++.+
T Consensus 26 ~rd~Ll~~~ 34 (38)
T PF10281_consen 26 TRDELLKLA 34 (38)
T ss_pred CHHHHHHHH
Confidence 444444443
No 283
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=21.14 E-value=68 Score=16.93 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=4.4
Q ss_pred CCHHHHHHHhhh
Q 031226 124 CSVDGCVAMIKP 135 (163)
Q Consensus 124 ~~~~~~~~~~~~ 135 (163)
++.+++..+..+
T Consensus 23 L~~~e~~~f~~A 34 (57)
T PF05321_consen 23 LTDDELEAFNSA 34 (57)
T ss_dssp S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 344444433333
No 284
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=21.13 E-value=1.1e+02 Score=23.65 Aligned_cols=67 Identities=7% Similarity=0.104 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHHhc
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMED----LDTDKDGFISLSEFETICRTS 84 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~----~d~~~~g~i~~~ef~~~~~~~ 84 (163)
.....+..++ .+-....+.-+.+||.+.+......+. +.++.++.. +.....+.+.++..++++...
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~-~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~ 356 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELL-EFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALL 356 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHH-HHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHH
Confidence 4455666667 665666788899999999986443321 112222211 112224457777777666553
No 285
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.92 E-value=2.3e+02 Score=17.87 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDL 64 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~l~~~~ 64 (163)
.++..+.+++. ...++.++.+++...+..-+..++...+-+.++.+
T Consensus 17 ~qR~~Il~~l~---~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 17 LPRLKILEVLQ---EPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred HHHHHHHHHHH---hCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 44444444433 23456788888888888777777777666666555
No 286
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=20.64 E-value=3.3e+02 Score=22.83 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCchHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 031226 58 VRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRL 120 (163)
Q Consensus 58 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 120 (163)
..+|+.....+.-.+..+.|..++. .+.++.++..++...+..|+++.|+......
T Consensus 407 ~~iF~nv~~p~~~~i~ld~~~~f~~-------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 407 RKIFKNVAKPGVILIDLDDLLRFMG-------DEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHhccCCCCccchhhhhhhhcCC-------HHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 4566666555544555555554433 4677888888887666669999998866543
No 287
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.32 E-value=3e+02 Score=18.92 Aligned_cols=101 Identities=6% Similarity=0.095 Sum_probs=59.0
Q ss_pred HhHHHHHHHHHhhcCCCCCcccHHHHHHHHH-hcCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcC---CCchHH
Q 031226 16 VSREEMQKIFNQFDANKDGKISLTELATVLK-SMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSS---GAAGEA 91 (163)
Q Consensus 16 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~-~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~ 91 (163)
+....+..+-..+. .+--++.+.|..... .+...-.++.++.|+..+-. -......|-.++..+. .....+
T Consensus 10 d~~~~l~~v~~~iK--~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~---m~~~i~~~n~fl~~~~~~~~~~~~~ 84 (205)
T PF12238_consen 10 DALKALKKVLDLIK--ENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPL---MKHKISHMNAFLNDWPPHMLEEGRE 84 (205)
T ss_pred HHHHHHHHHHHHHc--cCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHccCchhhhhccHH
Confidence 44455555555552 333566677755433 34455566666666655411 1122233333333222 233456
Q ss_pred HHHHHHHHhcCCCCCcc-cHHHHHHHHHHhC
Q 031226 92 ELREAFDLYDQDKNGLI-SAEELNLVLNRLG 121 (163)
Q Consensus 92 ~~~~~f~~~d~~~~g~i-~~~e~~~~~~~~~ 121 (163)
.+...|+.+=.+.+..+ +.+-+..+|+.+-
T Consensus 85 ~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl 115 (205)
T PF12238_consen 85 KMTKYYKKHIYKEDSEVKDYNGLVKFCKDFL 115 (205)
T ss_pred HHHHHHHHhccCcccccccHHHHHHHHHHHh
Confidence 78888888887888888 9999999998873
No 288
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=20.30 E-value=97 Score=17.64 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=16.3
Q ss_pred CCHHHHHHHhhhhcCCCCCccchHHHHHHhh
Q 031226 124 CSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 154 (163)
Q Consensus 124 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 154 (163)
+++.+...+-...+.-..|+|+.+.|+..+.
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~ 46 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALF 46 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455555555444444555666666555443
No 289
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=20.08 E-value=1e+02 Score=25.19 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCCcccHHH-HHHHHHHhCCCCCHHHHHHHhhhhcCCCC
Q 031226 103 DKNGLISAEE-LNLVLNRLGIKCSVDGCVAMIKPVDADGD 141 (163)
Q Consensus 103 ~~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (163)
|-||.||+.+ +-+++-.+|..++-.-|..||..+-.|+-
T Consensus 536 DIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGY 575 (738)
T KOG2116|consen 536 DIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGY 575 (738)
T ss_pred cCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCe
Confidence 6689999998 56788888999999999999999876654
Done!