BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031227
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 119/145 (82%), Gaps = 2/145 (1%)
Query: 21 GMKRKGA--YCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGL 78
G + KG Y A WGLF++ FGR+DA E DPEGRVPQW KATVQE KDKF A+GL
Sbjct: 124 GNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEXKDKFIAVGL 183
Query: 79 GPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS 138
GPRQLAV SAFLGPDQAATE LLATD V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS
Sbjct: 184 GPRQLAVXSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLS 243
Query: 139 SLGQQINYEAYTYPAQKIELSKLKL 163
LGQQIN+EAYTYP ++I LSKLKL
Sbjct: 244 CLGQQINFEAYTYPVERINLSKLKL 268
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLSDQDIVALSG 160
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 90 LGPDQAATEALLATDKD------VSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSL 140
LG D ATE ++ DK+ +SP + Y T + TD LI++ +L SL
Sbjct: 14 LGADTRATEGMVVADKNCSKIHFISPNI--YCCGAGTAADTDMTTQLISSNLELHSL 68
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 90 LGPDQAATEALLATDKD------VSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSL 140
LG D ATE ++ DK+ +SP + Y T + TD LI++ +L SL
Sbjct: 14 LGADTRATEGMVVADKNCSKIHFISPNI--YCCGAGTAADTDMTTQLISSNLELHSL 68
>pdb|3L2D|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2E|B Chain B, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|D Chain D, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2F|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2G|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2
Length = 390
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 90 LGPDQAATEALLATDK--DVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQIN 145
LG E+ LATD D+S W + + RE V V+L+ K GQ I+
Sbjct: 328 LGKRGTGGESSLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSID 385
>pdb|3L2E|A Chain A, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|C Chain C, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp
Length = 374
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 90 LGPDQAATEALLATDK--DVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQIN 145
LG E+ LATD D+S W + + RE V V+L+ K GQ I+
Sbjct: 312 LGKRGTGGESSLATDSTYDISNWARLGKSERELVQVLVDGVNLLIACDKKLEAGQSID 369
>pdb|3BD0|A Chain A, Crystal Structure Of Memo, Form Ii
pdb|3BD0|B Chain B, Crystal Structure Of Memo, Form Ii
pdb|3BD0|C Chain C, Crystal Structure Of Memo, Form Ii
pdb|3BD0|D Chain D, Crystal Structure Of Memo, Form Ii
Length = 293
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 12/118 (10%)
Query: 34 AQMW--GLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAI-----GLGPRQLAVM 86
++W G+FE+ +TD E E +P KA ++ KD+F+ I L +
Sbjct: 107 GELWKTGMFERMSLQTDEDEHSIEMHLPYTAKA-MESHKDEFTIIPVLVGALSESKEQEF 165
Query: 87 SAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQI 144
A L D W Q+++ S SQ ++ + L +G I
Sbjct: 166 GKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQG----EIYRSIEHLDKMGMSI 219
>pdb|1PFO|A Chain A, Perfringolysin O
Length = 500
Score = 26.2 bits (56), Expect = 9.5, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 102 ATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSS 139
A D+ VS W +KY + ++T Y ++ + +++SS
Sbjct: 157 AIDELVSKWNEKYSSTHTLPARTQYSESMVYSKSQISS 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,698,402
Number of Sequences: 62578
Number of extensions: 174151
Number of successful extensions: 365
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 26
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)