BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031227
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82281|TL29_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=TL29 PE=1 SV=2
Length = 349
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 112/145 (77%), Positives = 121/145 (83%), Gaps = 2/145 (1%)
Query: 21 GMKRKGA--YCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGL 78
G + KG Y A WGLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+GL
Sbjct: 205 GNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGL 264
Query: 79 GPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS 138
GPRQLAVMSAFLGPDQAATE LLATD V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS
Sbjct: 265 GPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLS 324
Query: 139 SLGQQINYEAYTYPAQKIELSKLKL 163
LGQQIN+EAYTYP ++I LSKLKL
Sbjct: 325 CLGQQINFEAYTYPVERINLSKLKL 349
>sp|Q9THX6|TL29_SOLLC Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum
lycopersicum GN=CLEB3J9 PE=3 SV=1
Length = 345
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 127/159 (79%), Gaps = 2/159 (1%)
Query: 7 LRQHFWHQPSANVEGMKRKGA--YCTLHMAQMWGLFEKQFGRTDAQEPDPEGRVPQWEKA 64
++ F + G KG Y WG F++ FGR+DAQEPDPEGRVPQW+KA
Sbjct: 187 VKSTFIASAISKCGGNVEKGTLLYSAYGSNGQWGQFDRIFGRSDAQEPDPEGRVPQWDKA 246
Query: 65 TVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQT 124
+VQEMKDKF A+GLGPRQLAVMS+FLGPDQAATEALLA+D +V PW+QKYQRSRETVS+T
Sbjct: 247 SVQEMKDKFKAVGLGPRQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRT 306
Query: 125 DYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLKL 163
DYEVDLITT TKLSSLGQ INYEAYTYP +KI+++KLKL
Sbjct: 307 DYEVDLITTVTKLSSLGQVINYEAYTYPPRKIDVTKLKL 345
>sp|P82338|UT023_PEA Unknown protein from spots 23/28/205 of 2D-PAGE of thylakoid
(Fragments) OS=Pisum sativum PE=1 SV=1
Length = 45
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 13/48 (27%)
Query: 111 VQKYQRSRETVS------QTDYEVDLITTFTKLSSLGQQINYEAYTYP 152
+++ QRS S +TDYEVD++TTFTKL NYEAYTYP
Sbjct: 4 IERRQRSEFQFSAVGLGPRTDYEVDILTTFTKL-------NYEAYTYP 44
>sp|Q1PER6|APX2_ARATH L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2
PE=2 SV=3
Length = 251
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA 88
GR D EP PEGR+PQ K V ++D F +GL + + +S
Sbjct: 119 GRLDKVEPPPEGRLPQATKG-VDHLRDVFGRMGLNDKDIVALSG 161
>sp|Q8GY91|APX6_ARATH Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6
PE=2 SV=1
Length = 329
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 44 FGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA 88
GR D+ +PDPEG++P E + +K+ F G ++L +S
Sbjct: 199 LGRLDSAQPDPEGKLPP-ETLSASGLKECFKRKGFSTQELVALSG 242
>sp|P48534|APX1_PEA L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1
SV=2
Length = 250
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 88
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 118 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLSDQDIVALSG 161
>sp|A1CAU3|XKS1_ASPCL Probable D-xylulose kinase A OS=Aspergillus clavatus (strain ATCC
1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=xkiA PE=2 SV=1
Length = 573
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 59 PQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSR 118
P W+ A+ Q+ D+F A+ GP QLA + A + P + ++QR
Sbjct: 133 PNWQDASTQKECDEFDAVLGGPEQLAEATGS-----------KAHHRFTGPQILRFQRKY 181
Query: 119 ETVSQTDYEVDLITTFTKLSSLGQ 142
V + + L+++F LG
Sbjct: 182 PEVYKKTSRISLVSSFLASLLLGH 205
>sp|Q62717|CAPS1_RAT Calcium-dependent secretion activator 1 OS=Rattus norvegicus
GN=Cadps PE=1 SV=1
Length = 1289
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 48 DAQEPDPEGRVP-QWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDK 105
+A++P R P + K +Q +KD+F A G Q+ AF+ Q+ E L +D+
Sbjct: 132 NAKQPTDMARRPRKISKQQLQTVKDRFQAFLNGETQIVADEAFMNAVQSYYEVFLKSDR 190
>sp|Q21AW5|UVRC_RHOPB UvrABC system protein C OS=Rhodopseudomonas palustris (strain
BisB18) GN=uvrC PE=3 SV=1
Length = 699
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 36 MWGLFEKQFGR-------TDAQEPDPEGRVPQWE--------KATVQEMKDKFSAIGLGP 80
M + E++F R +A +P P+ VPQW + + +++ F A+GL
Sbjct: 518 MREVLERRFKRLLAPPPEAEAGKPKPDDEVPQWPDLVIIDGGRGQLNAVQEIFQALGLS- 576
Query: 81 RQLAVMSAFLGPDQ-AATEALLATDK 105
+ +M+ GPD+ A E L D+
Sbjct: 577 -TVTLMAVAKGPDRDAGRETLFMPDR 601
>sp|Q9FE01|APX2_ORYSJ L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica
GN=APX2 PE=1 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 45 GRTDAQEPDPEGRVPQWEKATVQEMKDKFSA-IGLGPRQLAVMSA 88
GR D EP PEGR+P + + ++ FSA +GL + + +S
Sbjct: 119 GRQDKPEPPPEGRLPDATQGS-DHLRQVFSAQMGLSDKDIVALSG 162
>sp|Q8CFB4|GBP5_MOUSE Guanylate-binding protein 5 OS=Mus musculus GN=Gbp5 PE=1 SV=2
Length = 590
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 111 VQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIELSKLK 162
+Q Y ++ETVS+T + D + T ++ S +Q EA AQ++E +++
Sbjct: 460 LQTYLNAKETVSRTILQTDQVLTDKEIQSKAEQERAEAARLEAQRLEAIRIQ 511
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,966,724
Number of Sequences: 539616
Number of extensions: 2173641
Number of successful extensions: 5341
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5333
Number of HSP's gapped (non-prelim): 21
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)