Query 031229
Match_columns 163
No_of_seqs 99 out of 112
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14770 TMEM18: Transmembrane 100.0 3.8E-60 8.2E-65 365.7 14.3 123 35-157 1-123 (123)
2 PF05957 DUF883: Bacterial pro 93.8 0.53 1.1E-05 34.0 7.8 65 2-70 30-94 (94)
3 PF12357 PLD_C: Phospholipase 86.4 0.57 1.2E-05 33.9 2.2 26 88-113 13-38 (74)
4 PRK10404 hypothetical protein; 85.9 7.4 0.00016 29.2 8.1 65 2-70 37-101 (101)
5 PF15086 UPF0542: Uncharacteri 76.6 7.6 0.00016 28.2 5.0 45 89-151 8-53 (74)
6 PRK10132 hypothetical protein; 66.6 54 0.0012 24.9 8.0 24 48-71 85-108 (108)
7 PF05478 Prominin: Prominin; 63.4 1E+02 0.0022 30.5 11.1 17 48-64 412-428 (806)
8 PF10669 Phage_Gp23: Protein g 60.8 21 0.00046 27.7 4.8 10 147-156 40-49 (121)
9 PRK14399 membrane protein; Pro 60.2 83 0.0018 27.6 8.9 96 33-133 119-225 (258)
10 PRK11098 microcin B17 transpor 56.3 1.7E+02 0.0037 27.1 10.7 107 43-149 53-172 (409)
11 PF12036 DUF3522: Protein of u 55.7 27 0.00059 28.5 5.0 84 37-140 43-139 (186)
12 COG4710 Predicted DNA-binding 52.8 27 0.00058 25.6 4.0 27 4-30 35-63 (80)
13 PF14144 DOG1: Seed dormancy c 51.5 29 0.00064 24.9 4.0 48 1-49 3-57 (80)
14 COG4575 ElaB Uncharacterized c 48.1 1.3E+02 0.0027 23.2 7.4 65 2-70 40-104 (104)
15 PF13295 DUF4077: Domain of un 45.3 75 0.0016 25.7 5.8 50 48-97 72-124 (175)
16 COG4325 Predicted membrane pro 42.5 3.1E+02 0.0066 26.1 11.9 75 55-139 96-184 (464)
17 PLN02292 ferric-chelate reduct 40.8 37 0.0008 33.5 4.1 43 89-132 35-78 (702)
18 PF05467 Herpes_U47: Herpesvir 38.1 16 0.00034 34.7 1.1 49 91-140 33-81 (677)
19 PF10280 Med11: Mediator compl 38.0 49 0.0011 25.0 3.6 30 2-31 40-69 (117)
20 PF14131 DUF4298: Domain of un 36.8 57 0.0012 23.7 3.7 43 6-48 3-47 (90)
21 PF14746 WASH-7_C: WASH comple 35.4 1.4E+02 0.003 24.6 6.1 38 4-44 15-52 (170)
22 KOG3491 Predicted membrane pro 35.2 27 0.00058 24.7 1.6 14 48-61 38-51 (65)
23 PF14037 YoqO: YoqO-like prote 33.1 88 0.0019 24.5 4.4 80 35-132 16-104 (117)
24 PRK13108 prolipoprotein diacyl 32.8 2.5E+02 0.0054 26.5 8.0 73 49-131 195-271 (460)
25 smart00511 ORANGE Orange domai 32.6 68 0.0015 20.0 3.1 35 25-59 2-36 (45)
26 COG3105 Uncharacterized protei 32.3 53 0.0012 26.4 3.1 25 45-69 2-27 (138)
27 PF03908 Sec20: Sec20; InterP 31.5 1.9E+02 0.0042 20.6 7.1 33 36-69 57-89 (92)
28 TIGR03141 cytochro_ccmD heme e 30.8 1.5E+02 0.0032 18.9 5.7 22 111-132 3-24 (45)
29 PRK11498 bcsA cellulose syntha 30.3 6E+02 0.013 25.9 11.5 29 99-131 202-230 (852)
30 PF08031 BBE: Berberine and be 30.1 25 0.00055 22.4 0.8 26 90-116 14-41 (47)
31 PRK10929 putative mechanosensi 29.1 6.9E+02 0.015 26.4 11.0 12 117-128 675-686 (1109)
32 PF12273 RCR: Chitin synthesis 28.3 61 0.0013 24.6 2.8 11 106-116 75-85 (130)
33 PF06472 ABC_membrane_2: ABC t 28.0 3.7E+02 0.008 22.7 7.8 50 80-132 34-83 (281)
34 PF04995 CcmD: Heme exporter p 27.9 1.7E+02 0.0036 18.6 4.8 21 112-132 3-23 (46)
35 KOG3880 Predicted small molecu 27.4 1.1E+02 0.0025 28.4 4.7 78 47-124 312-401 (409)
36 PF10444 Nbl1_Borealin_N: Nbl1 27.3 1E+02 0.0022 20.6 3.5 47 2-48 8-54 (59)
37 PF05827 ATP-synt_S1: Vacuolar 26.6 71 0.0015 26.9 3.1 29 102-131 248-276 (282)
38 TIGR03030 CelA cellulose synth 26.3 4.7E+02 0.01 25.5 8.9 38 99-140 73-110 (713)
39 PF14880 COX14: Cytochrome oxi 25.9 2.1E+02 0.0046 19.2 6.5 37 122-158 19-55 (59)
40 TIGR03834 EAGR_box EAGR box. T 25.8 26 0.00056 21.1 0.2 11 106-116 18-28 (28)
41 COG2205 KdpD Osmosensitive K+ 25.5 4.3E+02 0.0093 27.3 8.6 66 67-133 415-485 (890)
42 PF04906 Tweety: Tweety; Inte 25.0 1.3E+02 0.0029 27.4 4.8 17 3-19 118-134 (406)
43 PF10327 7TM_GPCR_Sri: Serpent 24.7 2.4E+02 0.0052 24.3 6.1 45 104-148 180-225 (303)
44 KOG3676 Ca2+-permeable cation 24.6 4.4E+02 0.0096 26.8 8.5 49 9-70 370-418 (782)
45 PHA02937 hypothetical protein; 24.4 1.9E+02 0.004 25.9 5.3 65 3-73 47-113 (310)
46 PF06365 CD34_antigen: CD34/Po 24.3 78 0.0017 26.8 2.9 31 104-134 91-121 (202)
47 PRK11281 hypothetical protein; 24.2 6E+02 0.013 26.7 9.6 14 116-129 689-702 (1113)
48 PLN02844 oxidoreductase/ferric 24.0 1.2E+02 0.0026 30.1 4.5 45 87-133 25-72 (722)
49 PF01219 DAGK_prokar: Prokaryo 23.9 3.1E+02 0.0068 20.4 9.3 41 70-112 36-76 (104)
50 PF03620 IBV_3C: IBV 3C protei 23.7 1.3E+02 0.0028 22.7 3.6 28 108-136 8-35 (93)
51 PF05399 EVI2A: Ectropic viral 23.5 1.4E+02 0.0031 25.9 4.3 38 113-151 129-166 (227)
52 PF13209 DUF4017: Protein of u 23.0 56 0.0012 22.8 1.5 31 88-133 23-53 (60)
53 PF04380 BMFP: Membrane fusoge 22.3 1.2E+02 0.0026 21.5 3.2 31 2-32 9-39 (79)
54 PF13567 DUF4131: Domain of un 21.8 2.7E+02 0.0059 19.9 5.1 12 46-57 11-22 (176)
55 PF06348 DUF1059: Protein of u 21.6 34 0.00074 23.0 0.2 32 2-34 23-54 (57)
56 PF15156 CLN6: Ceroid-lipofusc 21.6 98 0.0021 27.3 3.0 83 40-135 149-255 (284)
57 PRK10699 phosphatidylglyceroph 21.4 2.8E+02 0.0061 23.9 5.8 48 47-96 49-96 (244)
58 PF05140 ResB: ResB-like famil 21.3 3.8E+02 0.0082 24.5 6.9 59 89-150 28-86 (464)
59 PF01313 Bac_export_3: Bacteri 21.0 61 0.0013 23.3 1.4 34 111-146 8-41 (76)
60 PF14110 DUF4282: Domain of un 20.9 3.2E+02 0.007 19.5 8.0 47 108-157 42-88 (90)
61 PLN02270 phospholipase D alpha 20.4 60 0.0013 32.8 1.7 22 87-108 736-757 (808)
62 PRK11677 hypothetical protein; 20.4 1.7E+02 0.0038 23.1 4.0 30 2-31 46-75 (134)
63 PF06396 AGTRAP: Angiotensin I 20.3 2.7E+02 0.0058 22.8 5.2 39 51-89 8-47 (162)
64 PF01473 CW_binding_1: Putativ 20.1 42 0.00091 17.5 0.3 8 107-114 11-18 (19)
No 1
>PF14770 TMEM18: Transmembrane protein 18
Probab=100.00 E-value=3.8e-60 Score=365.70 Aligned_cols=123 Identities=53% Similarity=0.981 Sum_probs=121.2
Q ss_pred hhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHhhhhHhHHHhchHhhhccccccCCCcc
Q 031229 35 DNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGI 114 (163)
Q Consensus 35 ~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk~~~~Q~~lFl~ll~~Vy~aE~iNe~aa~nW~~Fs~qnYFDs~G~ 114 (163)
+++++|+++|||||||++||++||++++++++.|||++++|+++|++++++|||||+|||+||+||++||+||||||+|+
T Consensus 1 ~~~~~f~~aVdW~EPwl~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~~aE~iN~~~a~nW~~Fs~qnYFDs~G~ 80 (123)
T PF14770_consen 1 HSIWAFIHAVDWTEPWLIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVYCAEYINEYAARNWRSFSKQNYFDSSGV 80 (123)
T ss_pred CCHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 115 FLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARI 157 (163)
Q Consensus 115 FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~qlk~k~r~ 157 (163)
|||+|||+|+|+||++|+++|+++++++||++||+|+|+|+||
T Consensus 81 Fisvv~s~PlLl~~~ii~~~~l~~~~~lmv~~Kr~qlr~~~rq 123 (123)
T PF14770_consen 81 FISVVFSAPLLLNCLIILVNWLYQLCSLMVQVKRAQLRRKARQ 123 (123)
T ss_pred eehHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999986
No 2
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=93.82 E-value=0.53 Score=33.97 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=57.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHcc
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRK 70 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk 70 (163)
+++++.++++.|...+-+++...+.+.+.+...+..-.+++. .||--..+++=+-+++..+++||
T Consensus 30 ~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e----~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 30 DEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE----NPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ChHHHHHHHHHHHHHHHHHHhCC
Confidence 678889999999999999999999999999999999999885 68888888988888888888876
No 3
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=86.40 E-value=0.57 Score=33.92 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=22.0
Q ss_pred hhhhHhHHHhchHhhhccccccCCCc
Q 031229 88 FAENLNRVLGSNWKRFATQNYFDSHG 113 (163)
Q Consensus 88 ~aE~iNe~aa~nW~~Fs~qnYFDs~G 113 (163)
|..++|+.|.+||+.|++..+=|=.|
T Consensus 13 CVr~Vn~iae~nW~~y~~ee~~dl~G 38 (74)
T PF12357_consen 13 CVRRVNEIAEENWKQYASEEVTDLPG 38 (74)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCC
Confidence 67899999999999999988755554
No 4
>PRK10404 hypothetical protein; Provisional
Probab=85.95 E-value=7.4 Score=29.24 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=49.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHcc
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRK 70 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk 70 (163)
+++|+..++.++...+-+.+...+...+.+...+..-.|+|. .||=-.-++.=+-+++..+++||
T Consensus 37 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e----~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 37 VELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE----KPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHHHHHhcC
Confidence 577888888888877777777777777777788888888887 67766666666777777777665
No 5
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=76.62 E-value=7.6 Score=28.24 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=24.8
Q ss_pred hhhHhHHHhchHhhhccccccCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 89 AENLNRVLGSNWKRFATQNYFDSHGIFLSALWS-GPLLFIAIIILVNTLFSLCSLIVRWKKAEL 151 (163)
Q Consensus 89 aE~iNe~aa~nW~~Fs~qnYFDs~G~FISvv~S-~PLLl~~~iilv~~l~~~~~lmv~~Kr~ql 151 (163)
++|+=+|+|. ||.|.+.++... .|++++|-++ +..|--.+++.|-
T Consensus 8 ~~~~v~~vAk-----------dP~~Fl~~vll~LtPlfiisa~l-------SwkLaK~ie~~er 53 (74)
T PF15086_consen 8 ASYIVEWVAK-----------DPYEFLTTVLLILTPLFIISAVL-------SWKLAKAIEKEER 53 (74)
T ss_pred HHHHHHHHHc-----------ChHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3455566665 477777776654 4666665443 3344444454443
No 6
>PRK10132 hypothetical protein; Provisional
Probab=66.61 E-value=54 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHccC
Q 031229 48 EPWLMGLMAFHFVLLVVAISSRKN 71 (163)
Q Consensus 48 EPwl~gL~~FH~~~l~~~l~srk~ 71 (163)
.||--.-++.=+-+++..+++||+
T Consensus 85 ~Pw~svgiaagvG~llG~Ll~RR~ 108 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGALLSLRK 108 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccC
Confidence 688777777777778887888764
No 7
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=63.41 E-value=1e+02 Score=30.50 Aligned_cols=17 Identities=35% Similarity=0.808 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHHHH
Q 031229 48 EPWLMGLMAFHFVLLVV 64 (163)
Q Consensus 48 EPwl~gL~~FH~~~l~~ 64 (163)
-.|+.|+++.=++++++
T Consensus 412 yR~~~~lil~~~llLIv 428 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIV 428 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888888887777765
No 8
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=60.77 E-value=21 Score=27.66 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 031229 147 KKAELRHRAR 156 (163)
Q Consensus 147 Kr~qlk~k~r 156 (163)
||.|+|.+++
T Consensus 40 ~~r~~r~~MK 49 (121)
T PF10669_consen 40 DSRQVRIRMK 49 (121)
T ss_pred hHHHHHHHHH
Confidence 3344443333
No 9
>PRK14399 membrane protein; Provisional
Probab=60.23 E-value=83 Score=27.60 Aligned_cols=96 Identities=19% Similarity=0.335 Sum_probs=45.5
Q ss_pred hhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHhh-----hhHhHHH------hchHh
Q 031229 33 AFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFA-----ENLNRVL------GSNWK 101 (163)
Q Consensus 33 ~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk~~~~Q~~lFl~ll~~Vy~a-----E~iNe~a------a~nW~ 101 (163)
.+....+.+-++|| +. .++++ ++.++++.+||..+-.-++-++++...+|.- .+++-.+ ..-|+
T Consensus 119 GVATs~Gvll~l~p---~~-~li~~-~if~i~~~itryvSL~Si~a~~~~~i~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 193 (258)
T PRK14399 119 AVSCFLGLLFVVNY---LY-LIIFL-IVWFISVAISRKVSVASIFSAATILLIMWIPYLYGVSYFIWQWNGLESFIVAWK 193 (258)
T ss_pred HHHHHHHHHHHHhH---HH-HHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccceeEeecccccccchhhhh
Confidence 34555677777873 32 22222 2333445567766655544333333333322 1221111 11255
Q ss_pred hhccccccCCCcchhHHHHHHHHHHHHHHHHH
Q 031229 102 RFATQNYFDSHGIFLSALWSGPLLFIAIIILV 133 (163)
Q Consensus 102 ~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv 133 (163)
.-...+|||+.+.|-+=.+..+.+..-+++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 225 (258)
T PRK14399 194 NYILFSLLNSFHYWFSNIWASGMLEGNIIILI 225 (258)
T ss_pred cchhhhhccccccccchhhhchhHHHHHHHHH
Confidence 55677888877765554444444433333333
No 10
>PRK11098 microcin B17 transporter; Reviewed
Probab=56.30 E-value=1.7e+02 Score=27.11 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=64.8
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcc--CchhHHH--H-----HHHHHHHHHhhhhHhHHHhchHhhhc----ccccc
Q 031229 43 AIDWKEPWLMGLMAFHFVLLVVAISSRK--NLNFQMY--L-----FLLALAGVYFAENLNRVLGSNWKRFA----TQNYF 109 (163)
Q Consensus 43 aVdWsEPwl~gL~~FH~~~l~~~l~srk--~~~~Q~~--l-----Fl~ll~~Vy~aE~iNe~aa~nW~~Fs----~qnYF 109 (163)
+.=|+.|.+..-.-|-+++.+.+..-+. +.+-+.- + .++++..|+.+=.+|.|.+.=+.... +.++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~ 132 (409)
T PRK11098 53 ARFWSPDFLWFYAYYLVCVGLFAGFWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKV 132 (409)
T ss_pred hHhcCchHHHHHHHHHHHHHHHhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCC
Confidence 3447778776555554444443332221 1122222 2 22234467778888888877666543 46678
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 110 DSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKA 149 (163)
Q Consensus 110 Ds~G~FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~ 149 (163)
|.++..-.+..-+++.+..+.+.+...+-.-.+..+|.+.
T Consensus 133 d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~w 172 (409)
T PRK11098 133 TIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTA 172 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888877777766666555555666443
No 11
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=55.72 E-value=27 Score=28.45 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHhhhcCC-CCcHHHHHHHHHHHHHHHHH----------HHHcc--CchhHHHHHHHHHHHHHhhhhHhHHHhchHhhh
Q 031229 37 FIGFFHAID-WKEPWLMGLMAFHFVLLVVA----------ISSRK--NLNFQMYLFLLALAGVYFAENLNRVLGSNWKRF 103 (163)
Q Consensus 37 ~~~f~~aVd-WsEPwl~gL~~FH~~~l~~~----------l~srk--~~~~Q~~lFl~ll~~Vy~aE~iNe~aa~nW~~F 103 (163)
...+||+.| -..++..+..-.|.+=.+.+ +..-+ +......+..+.+.++......|.+
T Consensus 43 ~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~~~~~~-------- 114 (186)
T PF12036_consen 43 FSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWVTLCAMARLDEPLKSVLHYFGALVIAIFQQKDRW-------- 114 (186)
T ss_pred HHHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCcc--------
Confidence 457899999 77677777777777533222 22222 2222222222222223333334443
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 104 ATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLC 140 (163)
Q Consensus 104 s~qnYFDs~G~FISvv~S~PLLl~~~iilv~~l~~~~ 140 (163)
| ...+.+|++.-..++++.|+++..
T Consensus 115 ---------~---~~~~~~Pi~~~~~i~~~~w~~r~~ 139 (186)
T PF12036_consen 115 ---------S---LWNTIGPILIGLLILLVSWLYRCR 139 (186)
T ss_pred ---------c---chhhHHHHHHHHHHHHHHHheecc
Confidence 3 245789999999999999998753
No 12
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=52.78 E-value=27 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHH--HHHHHHHHhcCh
Q 031229 4 LRSAAEAHMDQVADL--VQKLSAELRTGL 30 (163)
Q Consensus 4 ~~~~~~~~~d~~~~~--~~~~~~~lr~~~ 30 (163)
+|+|+|+|++.|+|+ ...+-.++|.|=
T Consensus 35 vrEaIE~~ieemED~ylA~~aler~k~G~ 63 (80)
T COG4710 35 VREAIEAYIEEMEDFYLAVNALERLKDGD 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 789999999999995 455666777654
No 13
>PF14144 DOG1: Seed dormancy control
Probab=51.52 E-value=29 Score=24.91 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=33.1
Q ss_pred ChHHHHHHHHhH---HHHHHHHHHHHHH----HhcChhhhhhhHHHhhhcCCCCcH
Q 031229 1 MEELRSAAEAHM---DQVADLVQKLSAE----LRTGLRPAFDNFIGFFHAIDWKEP 49 (163)
Q Consensus 1 ~~~~~~~~~~~~---d~~~~~~~~~~~~----lr~~~~~~~~~~~~f~~aVdWsEP 49 (163)
|.|||+|+++|. +.+..+|+++.+- -|.+...+-+++..++.. .|.-|
T Consensus 3 l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~-~W~sp 57 (80)
T PF14144_consen 3 LNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSP-PWKSP 57 (80)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCC-CCCCH
Confidence 579999999998 5667777766543 445556666777766554 58755
No 14
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=48.13 E-value=1.3e+02 Score=23.23 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=39.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHcc
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRK 70 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk 70 (163)
+|+|+..++-+.+.-+-+++.+.....+=..+.+---.|++.= ||--.=++--+-+++..+++||
T Consensus 40 ~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~----PWq~VGvaAaVGlllGlLlsRR 104 (104)
T COG4575 40 EELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVREN----PWQGVGVAAAVGLLLGLLLSRR 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHhcC
Confidence 4556666655555555555555555555565666666677765 5555555555666666677765
No 15
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=45.35 E-value=75 Score=25.68 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHc---cCchhHHHHHHHHHHHHHhhhhHhHHHh
Q 031229 48 EPWLMGLMAFHFVLLVVAISSR---KNLNFQMYLFLLALAGVYFAENLNRVLG 97 (163)
Q Consensus 48 EPwl~gL~~FH~~~l~~~l~sr---k~~~~Q~~lFl~ll~~Vy~aE~iNe~aa 97 (163)
|.-..+++.|-++....+..-- ...-+|++.|-+.++++|.+|++--..+
T Consensus 72 eamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilg 124 (175)
T PF13295_consen 72 EAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILG 124 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 4455566666655544333221 2234899999999999999999876543
No 16
>COG4325 Predicted membrane protein [Function unknown]
Probab=42.50 E-value=3.1e+02 Score=26.09 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHc-----------cCchhHHHHHHHHHHHHHhhhhHhHHHhchHhhhccccccCCCcch---hHHHH
Q 031229 55 MAFHFVLLVVAISSR-----------KNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIF---LSALW 120 (163)
Q Consensus 55 ~~FH~~~l~~~l~sr-----------k~~~~Q~~lFl~ll~~Vy~aE~iNe~aa~nW~~Fs~qnYFDs~G~F---ISvv~ 120 (163)
++|-+.+..+-+.|. ++..-|+.+-..+...|||---+-..+.. ||..|-| +|++-
T Consensus 96 ~~fSItvvalqlaSsqfsPRll~~fmrd~~nqvvLa~FlctFvysl~vlrtvg~e----------~d~~g~FIp~~avtv 165 (464)
T COG4325 96 IVFSITVVALQLASSQFSPRLLRTFLRDVPNQVVLAIFLCTFVYSLGVLRTVGEE----------RDGQGAFIPKVAVTV 165 (464)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhhc----------cCccccceehHHHHH
Confidence 445555555555554 44467988888888889987766665443 3444555 57777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031229 121 SGPLLFIAIIILVNTLFSL 139 (163)
Q Consensus 121 S~PLLl~~~iilv~~l~~~ 139 (163)
+.-++++|+.+++-++..+
T Consensus 166 ~lLlaiisig~~iyfl~~l 184 (464)
T COG4325 166 SLLLAIISIGALIYFLHHL 184 (464)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7767666666655554443
No 17
>PLN02292 ferric-chelate reductase
Probab=40.80 E-value=37 Score=33.49 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=30.8
Q ss_pred hhhHhHHHhchHhhhc-cccccCCCcchhHHHHHHHHHHHHHHHH
Q 031229 89 AENLNRVLGSNWKRFA-TQNYFDSHGIFLSALWSGPLLFIAIIIL 132 (163)
Q Consensus 89 aE~iNe~aa~nW~~Fs-~qnYFDs~G~FISvv~S~PLLl~~~iil 132 (163)
++.-++.-..+|+.-. +..||-.+|... ++||.|+++++++-.
T Consensus 35 t~~~~~~~~~~~~~~~~~~t~fg~~g~~~-~~~~~p~~~~a~~~~ 78 (702)
T PLN02292 35 TSTYKTIWLPSMRAKLGKSTYFGAPGVNL-LVYMFPMILLACLGC 78 (702)
T ss_pred cHHHHhhccHHHHHhccCCceecccchhh-HHHhhHHHHHHHHHH
Confidence 4444444445566665 577999999876 789999999987644
No 18
>PF05467 Herpes_U47: Herpesvirus glycoprotein U47; InterPro: IPR008645 The function of the U47 herpesvirus proteins is unknown [].
Probab=38.12 E-value=16 Score=34.73 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=42.3
Q ss_pred hHhHHHhchHhhhccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 91 NLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLC 140 (163)
Q Consensus 91 ~iNe~aa~nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv~~l~~~~ 140 (163)
..|..-..||..|.+.-|.|=+..+++. .-.||-++|+-.++.|+++..
T Consensus 33 afktvNrhnWsdeqreHfydlrnlYt~f-Cq~nlSldCFtQILtnvFsw~ 81 (677)
T PF05467_consen 33 AFKTVNRHNWSDEQREHFYDLRNLYTQF-CQINLSLDCFTQILTNVFSWS 81 (677)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhhhhh
Confidence 3466678899999999999999999985 458999999999999998764
No 19
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=37.96 E-value=49 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChh
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLR 31 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~ 31 (163)
++-++++++|.++.-..++.+..+||++..
T Consensus 40 ~~~k~~f~~~~~~f~~~L~~V~~~Lr~qI~ 69 (117)
T PF10280_consen 40 ESSKEAFESATSEFFSTLSSVEVELRRQIK 69 (117)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999883
No 20
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=36.75 E-value=57 Score=23.69 Aligned_cols=43 Identities=16% Similarity=0.470 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHh--cChhhhhhhHHHhhhcCCCCc
Q 031229 6 SAAEAHMDQVADLVQKLSAELR--TGLRPAFDNFIGFFHAIDWKE 48 (163)
Q Consensus 6 ~~~~~~~d~~~~~~~~~~~~lr--~~~~~~~~~~~~f~~aVdWsE 48 (163)
..|++..+....+++++.+.+. +...+-+..+..||.+-+|.+
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~ 47 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWME 47 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHH
Confidence 3577777888888888777766 334677788889999888864
No 21
>PF14746 WASH-7_C: WASH complex subunit 7, C-terminal
Probab=35.39 E-value=1.4e+02 Score=24.63 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcC
Q 031229 4 LRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAI 44 (163)
Q Consensus 4 ~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aV 44 (163)
+.+.+.++-|=..-||+.++.++|+ +-.+.+-.|+.=|
T Consensus 15 l~~~~segt~YfklLv~vF~~~l~~---~~~~HL~~Fy~Iv 52 (170)
T PF14746_consen 15 LKKNFSEGTDYFKLLVDVFSPELRS---PKNHHLKNFYLIV 52 (170)
T ss_pred HHHhhcccchHHHHHHHHHHHHHhC---chHHHHHhhhhhh
Confidence 3444455555666667777777776 4444555554433
No 22
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=35.24 E-value=27 Score=24.68 Aligned_cols=14 Identities=43% Similarity=0.971 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHHHH
Q 031229 48 EPWLMGLMAFHFVL 61 (163)
Q Consensus 48 EPwl~gL~~FH~~~ 61 (163)
-|||+||..|-++-
T Consensus 38 gPwLlglFvFVVcG 51 (65)
T KOG3491|consen 38 GPWLLGLFVFVVCG 51 (65)
T ss_pred chHHHHHHHHHhhc
Confidence 69999998886553
No 23
>PF14037 YoqO: YoqO-like protein
Probab=33.07 E-value=88 Score=24.50 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=48.9
Q ss_pred hhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHH---------HccCchhHHHHHHHHHHHHHhhhhHhHHHhchHhhhcc
Q 031229 35 DNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAIS---------SRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFAT 105 (163)
Q Consensus 35 ~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~---------srk~~~~Q~~lFl~ll~~Vy~aE~iNe~aa~nW~~Fs~ 105 (163)
.-+.+.+.+-||..- +.....| +.+++ |||.--.+.+-|+++++++++ -...+
T Consensus 16 siil~~f~~~e~i~~-I~~~~~f-----VFillY~wd~~K~ySkKsl~I~~i~fvvl~~~i~f------------iL~~g 77 (117)
T PF14037_consen 16 SIILKSFSKSEWISH-IACVGGF-----VFILLYNWDEWKQYSKKSLIILGIEFVVLILGIPF------------ILLEG 77 (117)
T ss_pred HHHHHhccchhhHHH-HHHHHHH-----HHHHhhhhHHHHHhhhcceeeeEeeeeehHHHHHH------------HHHHh
Confidence 445556666677554 3333332 22222 344444566666666666652 23458
Q ss_pred ccccCCCcchhHHHHHHHHHHHHHHHH
Q 031229 106 QNYFDSHGIFLSALWSGPLLFIAIIIL 132 (163)
Q Consensus 106 qnYFDs~G~FISvv~S~PLLl~~~iil 132 (163)
|.|||+.++|-+-..++-+++...+..
T Consensus 78 q~~~~~~~if~Gw~~~akilyii~~l~ 104 (117)
T PF14037_consen 78 QDQMEKHPIFQGWESIAKILYIIIILI 104 (117)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888776554433
No 24
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=32.85 E-value=2.5e+02 Score=26.46 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-ccCc--hhHHH-HHHHHHHHHHhhhhHhHHHhchHhhhccccccCCCcchhHHHHHHHH
Q 031229 49 PWLMGLMAFHFVLLVVAISS-RKNL--NFQMY-LFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPL 124 (163)
Q Consensus 49 Pwl~gL~~FH~~~l~~~l~s-rk~~--~~Q~~-lFl~ll~~Vy~aE~iNe~aa~nW~~Fs~qnYFDs~G~FISvv~S~PL 124 (163)
|=.++=..+.++++++++.. ||+. +-|++ +|+++.++. -.+=|+.+.+=.. ++ -|+=++-+.|+|+
T Consensus 195 PTqLYEsi~~lllf~iLl~l~rk~~~~~G~lf~lYli~Ygi~---RF~iEflR~d~~~-----~~--~gl~~~Q~lSl~~ 264 (460)
T PRK13108 195 PTFLYELIWNVLVFVALIYIDRRFIIGHGRLFGFYVAFYCAG---RFCVELLRDDPAT-----LI--AGIRINSFTSTFV 264 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH---HHHhhhhccCchh-----hh--cCccHHHHHHHHH
Confidence 43444334444444444333 3322 23443 555555544 2344544444111 11 1455666788888
Q ss_pred HHHHHHH
Q 031229 125 LFIAIII 131 (163)
Q Consensus 125 Ll~~~ii 131 (163)
++.++++
T Consensus 265 il~gl~~ 271 (460)
T PRK13108 265 FIGAVVY 271 (460)
T ss_pred HHHHHHH
Confidence 8777644
No 25
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=32.63 E-value=68 Score=20.02 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=27.4
Q ss_pred HHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHH
Q 031229 25 ELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHF 59 (163)
Q Consensus 25 ~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~ 59 (163)
+-|.||..-..++..|+.+.+..+|=...-+.=|+
T Consensus 2 ~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL 36 (45)
T smart00511 2 SFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHL 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 45789999999999999999997775555555554
No 26
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.31 E-value=53 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.597 Sum_probs=21.4
Q ss_pred CCC-cHHHHHHHHHHHHHHHHHHHHc
Q 031229 45 DWK-EPWLMGLMAFHFVLLVVAISSR 69 (163)
Q Consensus 45 dWs-EPwl~gL~~FH~~~l~~~l~sr 69 (163)
+|| +||+..++++-+-+.|..++.|
T Consensus 2 nwt~~~W~~a~igLvvGi~IG~li~R 27 (138)
T COG3105 2 NWTFMTWEYALIGLVVGIIIGALIAR 27 (138)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 685 9999999999999998777665
No 27
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.52 E-value=1.9e+02 Score=20.56 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=21.3
Q ss_pred hHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHc
Q 031229 36 NFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSR 69 (163)
Q Consensus 36 ~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~sr 69 (163)
.+..-+..-||+|.+++... |=+++.++.++.+
T Consensus 57 ~ll~~l~r~~~~D~~li~~~-~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 57 KLLKKLERRDKTDRILIFFA-FLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhh
Confidence 45667778899999999855 4444444444433
No 28
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=30.82 E-value=1.5e+02 Score=18.91 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=13.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHH
Q 031229 111 SHGIFLSALWSGPLLFIAIIIL 132 (163)
Q Consensus 111 s~G~FISvv~S~PLLl~~~iil 132 (163)
.+|.|+=.-|.+-++++...++
T Consensus 3 gy~~yVW~sYg~t~l~l~~li~ 24 (45)
T TIGR03141 3 GYAFYVWLAYGITALVLAGLIL 24 (45)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 4577776666666555554433
No 29
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=30.27 E-value=6e+02 Score=25.87 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=18.0
Q ss_pred hHhhhccccccCCCcchhHHHHHHHHHHHHHHH
Q 031229 99 NWKRFATQNYFDSHGIFLSALWSGPLLFIAIII 131 (163)
Q Consensus 99 nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~ii 131 (163)
-||.+++-|+=| -.+.+++..+++.-++.
T Consensus 202 ~WR~~~tL~~~~----~~~~~~~~~ll~ae~~~ 230 (852)
T PRK11498 202 WWRYTSTLNWDD----PVSLVCGLILLFAETYA 230 (852)
T ss_pred HHHHheeeCCCc----hHHHHHHHHHHHHHHHH
Confidence 699999998633 34555665555544433
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=30.06 E-value=25 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=16.9
Q ss_pred hhHhHHHhchHhhhc--cccccCCCcchh
Q 031229 90 ENLNRVLGSNWKRFA--TQNYFDSHGIFL 116 (163)
Q Consensus 90 E~iNe~aa~nW~~Fs--~qnYFDs~G~FI 116 (163)
+....+-+.||+... |+.| ||.|+|-
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~y-DP~n~F~ 41 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKY-DPDNVFR 41 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH--TT-TS-
T ss_pred HHHHHHhchhHHHHHHHHHHh-CccceeC
Confidence 446667778887773 6777 9999994
No 31
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.07 E-value=6.9e+02 Score=26.38 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 031229 117 SALWSGPLLFIA 128 (163)
Q Consensus 117 Svv~S~PLLl~~ 128 (163)
.++..+|+.++.
T Consensus 675 ~~l~~~P~~l~~ 686 (1109)
T PRK10929 675 NLLIGAPLVAAL 686 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 344467887764
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.33 E-value=61 Score=24.55 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=7.4
Q ss_pred ccccCCCcchh
Q 031229 106 QNYFDSHGIFL 116 (163)
Q Consensus 106 qnYFDs~G~FI 116 (163)
.-|||.+|.|-
T Consensus 75 ~g~Yd~~g~~~ 85 (130)
T PF12273_consen 75 PGYYDQQGNFH 85 (130)
T ss_pred CCCCCCCCCCC
Confidence 45778777664
No 33
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=27.97 E-value=3.7e+02 Score=22.69 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhHhHHHhchHhhhccccccCCCcchhHHHHHHHHHHHHHHHH
Q 031229 80 LLALAGVYFAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIIL 132 (163)
Q Consensus 80 l~ll~~Vy~aE~iNe~aa~nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iil 132 (163)
+++++-++++=++|.+-+.-++...+ .|.++..-.++..+.+.+...++.
T Consensus 34 ~l~l~~~~lsv~~~~~~g~~~~aL~~---~d~~~f~~~l~~~~~l~~~~~~l~ 83 (281)
T PF06472_consen 34 LLLLARVYLSVRINFWNGDFYNALQQ---KDLQAFWRLLLLFLLLAIASALLN 83 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777766655 455666555555444444444333
No 34
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=27.91 E-value=1.7e+02 Score=18.64 Aligned_cols=21 Identities=19% Similarity=0.342 Sum_probs=10.9
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 031229 112 HGIFLSALWSGPLLFIAIIIL 132 (163)
Q Consensus 112 ~G~FISvv~S~PLLl~~~iil 132 (163)
+|.|+=.-|.+-++++...++
T Consensus 3 y~~yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 3 YGFYVWSSYGVTALVLAGLIV 23 (46)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 456665556555554444433
No 35
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=27.40 E-value=1.1e+02 Score=28.42 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHccCch-hHHH-HHHHHH--HHHHhhhhHhHHHhchH------hhh--ccccccCCCcc
Q 031229 47 KEPWLMGLMAFHFVLLVVAISSRKNLN-FQMY-LFLLAL--AGVYFAENLNRVLGSNW------KRF--ATQNYFDSHGI 114 (163)
Q Consensus 47 sEPwl~gL~~FH~~~l~~~l~srk~~~-~Q~~-lFl~ll--~~Vy~aE~iNe~aa~nW------~~F--s~qnYFDs~G~ 114 (163)
+=|.+..|..+..+-++.+++.-..+- -++. +|++++ ++.=.|.|.|.+-+.|= |.| +..--=||-|+
T Consensus 312 ~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi 391 (409)
T KOG3880|consen 312 TMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGI 391 (409)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhH
Confidence 457888888888887776665544443 2322 344433 34446789999988875 334 23344599999
Q ss_pred hhHHHHHHHH
Q 031229 115 FLSALWSGPL 124 (163)
Q Consensus 115 FISvv~S~PL 124 (163)
|.+...|+|+
T Consensus 392 ~lA~~lalpl 401 (409)
T KOG3880|consen 392 FLAGLLALPL 401 (409)
T ss_pred HHHHHHhccc
Confidence 9999999996
No 36
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=27.34 E-value=1e+02 Score=20.56 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=35.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCc
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKE 48 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsE 48 (163)
+++...+++....|..-.+..-.++|..++..+-.+..=++...|.|
T Consensus 8 ~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~vR~m~~~d 54 (59)
T PF10444_consen 8 QNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKAVRKMTMRD 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTSBHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHH
Confidence 45566677888888888888888888888888888887777777765
No 37
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=26.63 E-value=71 Score=26.95 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=22.3
Q ss_pred hhccccccCCCcchhHHHHHHHHHHHHHHH
Q 031229 102 RFATQNYFDSHGIFLSALWSGPLLFIAIII 131 (163)
Q Consensus 102 ~Fs~qnYFDs~G~FISvv~S~PLLl~~~ii 131 (163)
.|.++|+|.+ |.|++++.++.|+.+.++-
T Consensus 248 lf~~yQFftp-gi~mglii~~~ll~IL~~g 276 (282)
T PF05827_consen 248 LFFDYQFFTP-GIWMGLIISLVLLSILYVG 276 (282)
T ss_pred eehhheeeec-cHHHHHHHHHHHHHHHHHH
Confidence 6889997755 7999999988877665543
No 38
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=26.32 E-value=4.7e+02 Score=25.45 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=25.2
Q ss_pred hHhhhccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 99 NWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLC 140 (163)
Q Consensus 99 nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv~~l~~~~ 140 (163)
-||.+++-|+ | | ..+.+++.++++.=++..+..+....
T Consensus 73 ~wr~~~tl~~-~--~-~~~~~~~~~l~~~e~~~~~~~~~~~~ 110 (713)
T TIGR03030 73 WWRLTETLPF-D--N-TLNFIFGTLLLLAELYSITILLLGYF 110 (713)
T ss_pred HhheeeecCC-C--c-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999985 2 3 45777888877766665554443333
No 39
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=25.88 E-value=2.1e+02 Score=19.16 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031229 122 GPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARIS 158 (163)
Q Consensus 122 ~PLLl~~~iilv~~l~~~~~lmv~~Kr~qlk~k~r~~ 158 (163)
.-|+..+++.-+...++..+++...|+++..-.++++
T Consensus 19 ~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~~~~e~~~ 55 (59)
T PF14880_consen 19 LGLIGFTVYGGGLTVYTVYSYFKYNRRRRAEWIEREK 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888888888888877776653333333
No 40
>TIGR03834 EAGR_box EAGR box. The EAGR box (Enriched in Aromatic and Glycine Residues) is found in three different proteins of the Mycoplasma genitalium terminal organelle, which acts in both cytadherence and gliding motility. The presence of this domain in a genome predicts the Mycoplasma-type terminal organelle structure, gliding motility, and cytadherence. The EAGR box may occur from one to nine times in a protein.
Probab=25.75 E-value=26 Score=21.12 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=7.9
Q ss_pred ccccCCCcchh
Q 031229 106 QNYFDSHGIFL 116 (163)
Q Consensus 106 qnYFDs~G~FI 116 (163)
.-|||++|-|+
T Consensus 18 ~GyFDe~~~w~ 28 (28)
T TIGR03834 18 KGYFDEDGNWV 28 (28)
T ss_pred eeEeCccCCCC
Confidence 45888888764
No 41
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=25.49 E-value=4.3e+02 Score=27.28 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=32.8
Q ss_pred HHccCchhHHH--HHHHHHHHH-HhhhhHhHHHhchHhhhccccccC--CCcchhHHHHHHHHHHHHHHHHH
Q 031229 67 SSRKNLNFQMY--LFLLALAGV-YFAENLNRVLGSNWKRFATQNYFD--SHGIFLSALWSGPLLFIAIIILV 133 (163)
Q Consensus 67 ~srk~~~~Q~~--lFl~ll~~V-y~aE~iNe~aa~nW~~Fs~qnYFD--s~G~FISvv~S~PLLl~~~iilv 133 (163)
...+....+.+ +|++.+..+ ..+.++..+.++= -++--.|||- |++.|.-.=..-|+-+..|+++.
T Consensus 415 ~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aai-lsvl~fNyFF~ePryTf~v~d~~y~vTf~vml~va 485 (890)
T COG2205 415 QLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAAL-LSVLVFNYFFTEPRYTFAVSDPQYLVTFAVMLAVA 485 (890)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHH-HHHHHHhheecCCceEEEEecCchHHHHHHHHHHH
Confidence 34444444433 344333322 2235666666654 3445789985 56666544444444444444443
No 42
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=24.99 E-value=1.3e+02 Score=27.37 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHHHHHH
Q 031229 3 ELRSAAEAHMDQVADLV 19 (163)
Q Consensus 3 ~~~~~~~~~~d~~~~~~ 19 (163)
.+.+.+++|.+.+++.+
T Consensus 118 ~l~~~v~~~l~~Le~~~ 134 (406)
T PF04906_consen 118 ALNSTVEQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35667788877777765
No 43
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=24.75 E-value=2.4e+02 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=24.3
Q ss_pred ccccccCCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 104 ATQNYFDSHGIFLSALWSGPL-LFIAIIILVNTLFSLCSLIVRWKK 148 (163)
Q Consensus 104 s~qnYFDs~G~FISvv~S~PL-Ll~~~iilv~~l~~~~~lmv~~Kr 148 (163)
++-..+|.+-.++.+...+=. ...+.++......++.++|.++|+
T Consensus 180 ~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~ 225 (303)
T PF10327_consen 180 PNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKK 225 (303)
T ss_pred CCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888666544433322 333344444445566666666664
No 44
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.56 E-value=4.4e+02 Score=26.81 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHcc
Q 031229 9 EAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAFHFVLLVVAISSRK 70 (163)
Q Consensus 9 ~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk 70 (163)
++|.+.+.++++++ |..+|..|-... |+.+ .....+|.+|+.+++..|-
T Consensus 370 ~eHl~Ll~~~i~~L---L~~KW~~f~k~~--f~~~--------~~~~~~y~i~ft~~~y~RP 418 (782)
T KOG3676|consen 370 NEHLELLDGPIEEL---LEDKWKAFGKKQ--FFMS--------LLIYLLYMICFTLAFYYRP 418 (782)
T ss_pred HHHHHHHhHHHHHH---HHHHHHHHhHHH--HHHH--------HHHHHHHHHHHHHHHhhcc
Confidence 58999999999988 667786554431 1211 1345678888888887775
No 45
>PHA02937 hypothetical protein; Provisional
Probab=24.38 E-value=1.9e+02 Score=25.94 Aligned_cols=65 Identities=28% Similarity=0.473 Sum_probs=49.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcH--HHHHHHHHHHHHHHHHHHHccCch
Q 031229 3 ELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEP--WLMGLMAFHFVLLVVAISSRKNLN 73 (163)
Q Consensus 3 ~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEP--wl~gL~~FH~~~l~~~l~srk~~~ 73 (163)
+++++++-.+.-+.+++.+-+.+||.-.. + +|..=.||-|| -+.++.-.|+-+-+-+.+|.++.+
T Consensus 47 dl~~~~~~Nv~~vk~li~~Y~~~lrd~~k---e---d~~nF~~WIepDrHL~YlarI~AgLkiY~mLt~~di~ 113 (310)
T PHA02937 47 DLQEYLDYNVNYVKNLIRVYMKDLRDYLK---E---DFCNFCDWIEPDRHLVYLARIHAGLKIYAMLTGKDIN 113 (310)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHh---c---cccccccccCccchhhhHHHHhhhhhhhhhhccccHH
Confidence 46677777777777888887777776554 2 45555789776 799999999999998888888764
No 46
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.28 E-value=78 Score=26.77 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=23.7
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHHHHHHH
Q 031229 104 ATQNYFDSHGIFLSALWSGPLLFIAIIILVN 134 (163)
Q Consensus 104 s~qnYFDs~G~FISvv~S~PLLl~~~iilv~ 134 (163)
+.+.|=|+.|+||++|-++-++++++++...
T Consensus 91 ~~~~~~~r~~~lI~lv~~g~~lLla~~~~~~ 121 (202)
T PF06365_consen 91 SHQSSSDRYPTLIALVTSGSFLLLAILLGAG 121 (202)
T ss_pred CCCCcCccceEEEehHHhhHHHHHHHHHHHH
Confidence 4566667778999999999877777666653
No 47
>PRK11281 hypothetical protein; Provisional
Probab=24.25 E-value=6e+02 Score=26.75 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHH
Q 031229 116 LSALWSGPLLFIAI 129 (163)
Q Consensus 116 ISvv~S~PLLl~~~ 129 (163)
..++..+|+.++.+
T Consensus 689 ~~~l~~~P~~l~~l 702 (1113)
T PRK11281 689 RTVLTIAPIALIVL 702 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556678876633
No 48
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=23.99 E-value=1.2e+02 Score=30.08 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=31.1
Q ss_pred HhhhhHhHHHhchH---hhhccccccCCCcchhHHHHHHHHHHHHHHHHH
Q 031229 87 YFAENLNRVLGSNW---KRFATQNYFDSHGIFLSALWSGPLLFIAIIILV 133 (163)
Q Consensus 87 y~aE~iNe~aa~nW---~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv 133 (163)
|.-=+-|.| .+.| ...++..||-.+|... ++||.|+++++++=.+
T Consensus 25 ~~~~pt~~~-~~~~~~~~~~~~~t~fg~~g~~~-~~~~~p~~~~a~~~~~ 72 (722)
T PLN02844 25 WILKPTNLW-TRKWKQAEDSARHTVFGYYGLNF-AVYTFPPIALAIIGLV 72 (722)
T ss_pred heeeCCHHH-HhhhhhHHhcccCceecccchhh-HhHhhHHHHHHHHHHH
Confidence 333344554 3334 5556788999999866 7899999999876543
No 49
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=23.87 E-value=3.1e+02 Score=20.44 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=25.3
Q ss_pred cCchhHHHHHHHHHHHHHhhhhHhHHHhchHhhhccccccCCC
Q 031229 70 KNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDSH 112 (163)
Q Consensus 70 k~~~~Q~~lFl~ll~~Vy~aE~iNe~aa~nW~~Fs~qnYFDs~ 112 (163)
+-+..+-++-++++++|..+|-+|+--..=....+ .+ |||.
T Consensus 36 ~~s~~ew~~li~~~~~Vl~~EllNTAIE~~vD~v~-~~-~~~~ 76 (104)
T PF01219_consen 36 GLSPWEWALLILAIFLVLIAELLNTAIERLVDLVS-PE-YHPL 76 (104)
T ss_dssp ----SHHHHHHHHHHHHHHHHTHHHHHHHHHTT------S-TT
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc-hh-hcHH
Confidence 45556667777788899999999998877777665 33 4443
No 50
>PF03620 IBV_3C: IBV 3C protein; InterPro: IPR005296 These proteins are the product of ORF 3C from Infectious bronchitis virus. Currently, the function of this protein remains unknown.
Probab=23.68 E-value=1.3e+02 Score=22.67 Aligned_cols=28 Identities=39% Similarity=0.600 Sum_probs=18.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 031229 108 YFDSHGIFLSALWSGPLLFIAIIILVNTL 136 (163)
Q Consensus 108 YFDs~G~FISvv~S~PLLl~~~iilv~~l 136 (163)
.|+++|.|.+.+| +-+=++++.++..-+
T Consensus 8 sleeNG~Flt~lY-v~~gfialYllgk~L 35 (93)
T PF03620_consen 8 SLEENGSFLTALY-VLLGFIALYLLGKAL 35 (93)
T ss_pred HHHhcCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 4789999999998 334445555554433
No 51
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.49 E-value=1.4e+02 Score=25.88 Aligned_cols=38 Identities=11% Similarity=0.304 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 113 GIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAEL 151 (163)
Q Consensus 113 G~FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~ql 151 (163)
+|-|-++.=+-|+++|.++.++.+.-. .-+-.+||++.
T Consensus 129 amLIClIIIAVLfLICT~LfLSTVVLA-NKVS~LKrskQ 166 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFLSTVVLA-NKVSSLKRSKQ 166 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 455555666667777777776666533 33566777765
No 52
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=22.96 E-value=56 Score=22.78 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=22.7
Q ss_pred hhhhHhHHHhchHhhhccccccCCCcchhHHHHHHHHHHHHHHHHH
Q 031229 88 FAENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILV 133 (163)
Q Consensus 88 ~aE~iNe~aa~nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv 133 (163)
.||--|..+ |+.|-+| +|+.|+++++.+|..
T Consensus 23 aSegYN~vg---WKlfvGQ------------~YAiPif~i~aiitF 53 (60)
T PF13209_consen 23 ASEGYNTVG---WKLFVGQ------------AYAIPIFIITAIITF 53 (60)
T ss_pred cccCccccc---hhheecc------------hhHhHHHHHHHHHhh
Confidence 566666654 8877776 558999999888754
No 53
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.27 E-value=1.2e+02 Score=21.53 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=19.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChhh
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLRP 32 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~ 32 (163)
|++...+.+.+....++-+++.+.+|...+.
T Consensus 9 d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~ 39 (79)
T PF04380_consen 9 DDLAKQISEALPAAQGPREEIEKNIRARLQS 39 (79)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5666666666666666666666666655543
No 54
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=21.82 E-value=2.7e+02 Score=19.91 Aligned_cols=12 Identities=17% Similarity=-0.233 Sum_probs=4.9
Q ss_pred CCcHHHHHHHHH
Q 031229 46 WKEPWLMGLMAF 57 (163)
Q Consensus 46 WsEPwl~gL~~F 57 (163)
|-.++...++++
T Consensus 11 ~~~~~~~~l~~~ 22 (176)
T PF13567_consen 11 SLPFPLILLALL 22 (176)
T ss_pred hhHHHHHHHHHH
Confidence 334444444443
No 55
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=21.61 E-value=34 Score=22.96 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=19.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChhhhh
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLRPAF 34 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~ 34 (163)
|||-+++.+|....-|+ ..+..+++.+.+..+
T Consensus 23 dEll~~~~~Ha~~~Hg~-~~~~~el~~~ir~~I 54 (57)
T PF06348_consen 23 DELLEAVVEHAREVHGM-TEIPEELREKIRSAI 54 (57)
T ss_pred HHHHHHHHHHHHHhcCC-ccCCHHHHHHHHHHh
Confidence 78999999999877553 233344444444333
No 56
>PF15156 CLN6: Ceroid-lipofuscinosis neuronal protein 6
Probab=21.57 E-value=98 Score=27.30 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=49.2
Q ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHccC-------------------chhHHH-HH----HHHHHHHHhhhhHhHH
Q 031229 40 FFHAIDWKEPWLMGLMAFHFVLLVVAISSRKN-------------------LNFQMY-LF----LLALAGVYFAENLNRV 95 (163)
Q Consensus 40 f~~aVdWsEPwl~gL~~FH~~~l~~~l~srk~-------------------~~~Q~~-lF----l~ll~~Vy~aE~iNe~ 95 (163)
++-..-|..|++..|..++--|+..+=--.+- ...|++ +| +.++.+|.
T Consensus 149 ~lgh~mwyiPfflilf~yf~gcft~~~~e~~mp~~a~lll~ps~lyywYLVtEGQifilfifTffaM~a~v~-------- 220 (284)
T PF15156_consen 149 YLGHCMWYIPFFLILFMYFSGCFTPSKAESRMPVSAWLLLGPSALYYWYLVTEGQIFILFIFTFFAMLALVM-------- 220 (284)
T ss_pred ccchhhhHHHHHHHHhhhhccccccccccccCCccceEEecccceEEEEEEecCeeeHHHHHHHHHHHHHHH--------
Confidence 34456699999888877777665422111000 034654 33 33333332
Q ss_pred HhchHhhhccccccCCCcchhHHHHHHHHHHHHHHHHHHH
Q 031229 96 LGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNT 135 (163)
Q Consensus 96 aa~nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv~~ 135 (163)
.+=-+--.=||+|+|.---|++-|++.++...-.|
T Consensus 221 -----hqkrkgl~~dsNGlFl~~SF~~tLllVa~WV~wLW 255 (284)
T PF15156_consen 221 -----HQKRKGLFLDSNGLFLFYSFALTLLLVALWVAWLW 255 (284)
T ss_pred -----HhhccCcccCCCceEeHHHHHHHHHHHHHHHHHHh
Confidence 22234456799999998888888888877655433
No 57
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=21.41 E-value=2.8e+02 Score=23.90 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHhhhhHhHHH
Q 031229 47 KEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVL 96 (163)
Q Consensus 47 sEPwl~gL~~FH~~~l~~~l~srk~~~~Q~~lFl~ll~~Vy~aE~iNe~a 96 (163)
+-||.+...+ ++|+...+..|.+.+....+++++.+++.+++.+|+..
T Consensus 49 ~~p~~~iT~~--~l~~~~~~~~r~~~k~~l~l~~~l~~~i~~~~~~k~~i 96 (244)
T PRK10699 49 TQPWGILTHV--LLCGWFLWCLRFRLKAALVLFAILAAAILVGQGVKSWI 96 (244)
T ss_pred CCchHHHHHH--HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566544333 23333334444444444556667777777888888763
No 58
>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []. Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.
Probab=21.25 E-value=3.8e+02 Score=24.45 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=44.1
Q ss_pred hhhHhHHHhchHhhhccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 89 AENLNRVLGSNWKRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAE 150 (163)
Q Consensus 89 aE~iNe~aa~nW~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~q 150 (163)
++|..+++..-++.+-+-+-|| +|-|--|.+=+++.++=+++|.+.+.-.+.-++++..
T Consensus 28 ~~y~~~~g~~~~~i~~~Lgl~~---vy~S~wF~~ll~ll~~sL~~Cs~~R~~~~~k~~~~~~ 86 (464)
T PF05140_consen 28 EFYQQNYGPFWGPIFDRLGLFD---VYSSWWFLLLLVLLALSLIACSIDRLPPLWKALRRPP 86 (464)
T ss_pred HHHHHHhCchHHHHHHHcCCCc---eEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566666555567777777655 6778888888889999999999999888877665444
No 59
>PF01313 Bac_export_3: Bacterial export proteins, family 3; InterPro: IPR002191 The fliL operon of Escherichia coli contains seven genes (including fliO, fliP, fliQ and fliR) involved in the biosynthesis and functioning of the flagellar organelle []. The fliO, fliP, fliQ and fliR genes encode highly hydrophobic polypeptides. The fliQ gene product, a small integral membrane protein that contains two putative transmembrane (TM) regions, is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Proteins sharing an evolutionary relationship with FliQ have been found in a range of bacteria: these include Yop translocation protein S from Yersinia pestis []; surface antigen-presentation protein SpaQ from Salmonella typhimurium and Shigella flexneri []; and probable translocation protein Y4YM from Rhizobium sp. (strain NGR234) []. All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways [].; GO: 0009306 protein secretion, 0016020 membrane
Probab=21.02 E-value=61 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=23.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 111 SHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRW 146 (163)
Q Consensus 111 s~G~FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~ 146 (163)
++++...+..|+|+|+.++++ ..+....+-.+++
T Consensus 8 r~al~~~l~~~~P~L~~alvv--GlvIsi~QA~TqI 41 (76)
T PF01313_consen 8 RQALWLVLMLSAPVLLVALVV--GLVISIFQAATQI 41 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 357888999999999988764 3444444445544
No 60
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=20.95 E-value=3.2e+02 Score=19.53 Aligned_cols=47 Identities=36% Similarity=0.431 Sum_probs=31.7
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 108 YFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARI 157 (163)
Q Consensus 108 YFDs~G~FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~qlk~k~r~ 157 (163)
...+.|-+..++. +|+.+.+.++..+...... ++-.|.+|-=++.++
T Consensus 42 ~~~~~~g~~~~l~-~~~~~l~~~i~~Ri~~E~~--i~~fri~e~l~~i~~ 88 (90)
T PF14110_consen 42 GFSFGGGFLGLLL-GPLGFLLGIILWRIMLEFL--IAIFRIAENLRRIRE 88 (90)
T ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 3344455555666 9999988888888887776 666777775444443
No 61
>PLN02270 phospholipase D alpha
Probab=20.43 E-value=60 Score=32.81 Aligned_cols=22 Identities=9% Similarity=0.431 Sum_probs=19.5
Q ss_pred HhhhhHhHHHhchHhhhccccc
Q 031229 87 YFAENLNRVLGSNWKRFATQNY 108 (163)
Q Consensus 87 y~aE~iNe~aa~nW~~Fs~qnY 108 (163)
=|-.++|+.|.+||+.|++.+.
T Consensus 736 ~cv~~v~~~a~~~w~~y~~~~~ 757 (808)
T PLN02270 736 ECIQKVNQIADKYWDLYSSETL 757 (808)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4677999999999999998876
No 62
>PRK11677 hypothetical protein; Provisional
Probab=20.39 E-value=1.7e+02 Score=23.09 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhcChh
Q 031229 2 EELRSAAEAHMDQVADLVQKLSAELRTGLR 31 (163)
Q Consensus 2 ~~~~~~~~~~~d~~~~~~~~~~~~lr~~~~ 31 (163)
|+-|..+++|++.=+.|+..+..+-|.=++
T Consensus 46 e~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~ 75 (134)
T PRK11677 46 EEYRQELVSHFARSAELLDTMAKDYRQLYQ 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999888776554
No 63
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=20.34 E-value=2.7e+02 Score=22.82 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHccC-chhHHHHHHHHHHHHHhh
Q 031229 51 LMGLMAFHFVLLVVAISSRKN-LNFQMYLFLLALAGVYFA 89 (163)
Q Consensus 51 l~gL~~FH~~~l~~~l~srk~-~~~Q~~lFl~ll~~Vy~a 89 (163)
+..++.+|.++....+.+..- ...+-..|.++++++|..
T Consensus 8 lK~I~lvH~~Lttw~~~~~W~p~sY~f~Nf~~l~~gvWAi 47 (162)
T PF06396_consen 8 LKAIFLVHWLLTTWACLGNWLPGSYLFYNFLFLALGVWAI 47 (162)
T ss_pred HHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Confidence 456788899988888877433 345666777777777743
No 64
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=20.09 E-value=42 Score=17.48 Aligned_cols=8 Identities=63% Similarity=1.107 Sum_probs=6.1
Q ss_pred cccCCCcc
Q 031229 107 NYFDSHGI 114 (163)
Q Consensus 107 nYFDs~G~ 114 (163)
=|||++|.
T Consensus 11 Yy~~~~G~ 18 (19)
T PF01473_consen 11 YYFDSDGY 18 (19)
T ss_dssp EEETTTSB
T ss_pred EEeCCCcc
Confidence 48888884
Done!