Query 031229
Match_columns 163
No_of_seqs 99 out of 112
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 17:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 72.3 0.33 2.4E-05 34.5 -0.2 15 3-17 89-103 (144)
2 d1orsc_ f.14.1.1 (C:) Potassiu 43.1 38 0.0028 22.9 6.7 65 83-151 46-111 (132)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 42.0 16 0.0012 25.1 4.5 34 3-36 67-100 (144)
4 d1f16a_ f.1.4.1 (A:) Proapopto 34.0 36 0.0026 25.0 5.6 38 11-48 129-172 (192)
5 d1ce3a_ g.69.1.1 (A:) Multidom 30.2 4.9 0.00036 25.0 -0.1 13 104-116 37-49 (54)
6 d2dw4a3 d.16.1.5 (A:655-763) L 23.6 3.2 0.00023 26.1 -2.0 36 17-53 68-105 (109)
7 d2cu8a1 g.39.1.3 (A:8-37) Cyst 23.0 1.6 0.00011 24.5 -3.2 16 86-102 12-27 (30)
8 d1b5qa2 d.16.1.5 (A:294-405) P 21.9 3.4 0.00024 26.3 -2.2 36 17-53 71-108 (112)
9 d1pjua2 g.69.1.1 (A:2-15,A:75- 20.8 9.2 0.00067 23.8 -0.1 13 104-116 35-47 (56)
10 d1rtwa_ a.132.1.3 (A:) Putativ 20.0 29 0.0021 24.2 2.5 52 6-57 74-125 (206)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=72.26 E-value=0.33 Score=34.50 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=5.5
Q ss_pred HHHHHHHHhHHHHHH
Q 031229 3 ELRSAAEAHMDQVAD 17 (163)
Q Consensus 3 ~~~~~~~~~~d~~~~ 17 (163)
|++..++.|+|.+..
T Consensus 89 e~r~kl~~~~eel~~ 103 (144)
T d1gs9a_ 89 DVRGRLVQYRGEVQA 103 (144)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 2
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=43.12 E-value=38 Score=22.87 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHhhhhHhHHHhchH-hhhccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031229 83 LAGVYFAENLNRVLGSNW-KRFATQNYFDSHGIFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAEL 151 (163)
Q Consensus 83 l~~Vy~aE~iNe~aa~nW-~~Fs~qnYFDs~G~FISvv~S~PLLl~~~iilv~~l~~~~~lmv~~Kr~ql 151 (163)
...++..|++=++.+.-. ..|.+.|.+| |++++-+...++..-..-+..+.++.+++--+|-...
T Consensus 46 ~~~iF~~E~~lrl~~~~~~~~~~~~~~iD----l~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~ 111 (132)
T d1orsc_ 46 LVIILWADYAYRAYKSGDPAGYVKKTLYE----IPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLI 111 (132)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTTTTTCGGG----TGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccceeCCcchHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677898888754322 2345667777 5565544444333322223333344444433443333
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=42.04 E-value=16 Score=25.08 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcChhhhhhh
Q 031229 3 ELRSAAEAHMDQVADLVQKLSAELRTGLRPAFDN 36 (163)
Q Consensus 3 ~~~~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~ 36 (163)
|++..+..+.+.+..-++.-..++|.++.|..++
T Consensus 67 e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~ee 100 (144)
T d1gs9a_ 67 ETRARLSKELQAAQARLGADMEDVRGRLVQYRGE 100 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333
No 4
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.04 E-value=36 Score=24.97 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhcCh------hhhhhhHHHhhhcCCCCc
Q 031229 11 HMDQVADLVQKLSAELRTGL------RPAFDNFIGFFHAIDWKE 48 (163)
Q Consensus 11 ~~d~~~~~~~~~~~~lr~~~------~~~~~~~~~f~~aVdWsE 48 (163)
|-|.+..+++-+.+.|+... ++-++++..|++.-+|+.
T Consensus 129 ~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~g~~~~f~~~~w~~ 172 (192)
T d1f16a_ 129 VPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQT 172 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTHHHHHTCSTHHHHHHCCCSCCHH
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHcCCCchHH
Confidence 44566677777777677544 667788888998888853
No 5
>d1ce3a_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=30.18 E-value=4.9 Score=25.03 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=11.2
Q ss_pred ccccccCCCcchh
Q 031229 104 ATQNYFDSHGIFL 116 (163)
Q Consensus 104 s~qnYFDs~G~FI 116 (163)
.+=|||+.+|.||
T Consensus 37 KGC~yfs~dGtfv 49 (54)
T d1ce3a_ 37 KGCKYFSDDGTFV 49 (54)
T ss_dssp TTCEEECSSSCEE
T ss_pred CCeeeEcCCCcEE
Confidence 4679999999997
No 6
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.61 E-value=3.2 Score=26.09 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcChhhh-hhhHHHhhhcCCC-CcHHHHH
Q 031229 17 DLVQKLSAELRTGLRPA-FDNFIGFFHAIDW-KEPWLMG 53 (163)
Q Consensus 17 ~~~~~~~~~lr~~~~~~-~~~~~~f~~aVdW-sEPwl~g 53 (163)
.+++.+...|++-++.- .....++ ...+| +|||..|
T Consensus 68 ~~~~~~l~~L~~~~~~~~~~~~~~~-~~~~W~~dp~~~G 105 (109)
T d2dw4a3 68 VIVGRCLAILKGIFGSSAVPQPKET-VVSRWRADPWARG 105 (109)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCCSEE-EECCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHhCccccCcccEE-EEeccCCCCccCE
Confidence 34555555666555422 2233333 35689 5888644
No 7
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.02 E-value=1.6 Score=24.48 Aligned_cols=16 Identities=38% Similarity=0.931 Sum_probs=12.6
Q ss_pred HHhhhhHhHHHhchHhh
Q 031229 86 VYFAENLNRVLGSNWKR 102 (163)
Q Consensus 86 Vy~aE~iNe~aa~nW~~ 102 (163)
||+||.+|.++ .+|..
T Consensus 12 VYfaEk~~~lg-k~WHk 27 (30)
T d2cu8a1 12 VYFAEKVSSLG-KDWHK 27 (30)
T ss_dssp CCTTTEEEETT-EEEET
T ss_pred eeeHHhhccCC-ccccc
Confidence 79999999885 66743
No 8
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=21.87 E-value=3.4 Score=26.28 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcChhhhh-hhHHHhhhcCCC-CcHHHHH
Q 031229 17 DLVQKLSAELRTGLRPAF-DNFIGFFHAIDW-KEPWLMG 53 (163)
Q Consensus 17 ~~~~~~~~~lr~~~~~~~-~~~~~f~~aVdW-sEPwl~g 53 (163)
.+++.+...|++-+++.. .... =+...+| +|||..|
T Consensus 71 ~~~~~~l~~L~~~~~~~~~~~~~-~~~~t~W~~dp~~~G 108 (112)
T d1b5qa2 71 QTKAEIMQVLRKMFPGKDVPDAT-DILVPRWWSDRFYKG 108 (112)
T ss_dssp HHHHHHHHHHHHHCTTSCCCCCS-EEECCCTTTCTTTSS
T ss_pred HHHHHHHHHHHHHhCcccccCCC-EEEeccCCCCCCccc
Confidence 456677777777664322 2222 2344689 5888643
No 9
>d1pjua2 g.69.1.1 (A:2-15,A:75-116) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=20.77 E-value=9.2 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=11.3
Q ss_pred ccccccCCCcchh
Q 031229 104 ATQNYFDSHGIFL 116 (163)
Q Consensus 104 s~qnYFDs~G~FI 116 (163)
.+=|||..+|.||
T Consensus 35 KGC~Yfs~dGtFv 47 (56)
T d1pjua2 35 KGCYYFGKDGKFV 47 (56)
T ss_dssp TTCEEECTTSCEE
T ss_pred CcceeECCCCcEE
Confidence 5679999999997
No 10
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.04 E-value=29 Score=24.22 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=25.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcChhhhhhhHHHhhhcCCCCcHHHHHHHHH
Q 031229 6 SAAEAHMDQVADLVQKLSAELRTGLRPAFDNFIGFFHAIDWKEPWLMGLMAF 57 (163)
Q Consensus 6 ~~~~~~~d~~~~~~~~~~~~lr~~~~~~~~~~~~f~~aVdWsEPwl~gL~~F 57 (163)
..++++++...+..++...+....-+|.-.....|+..+--+.||..++.++
T Consensus 74 ~~~~~E~~~~~~~~~~~g~~~~~~~~p~~~~y~~~l~~~a~~~~~~~~~~al 125 (206)
T d1rtwa_ 74 YYISKELEMFEKKAQELGISLNGEIDWRAKSYVNYLLSVASLGSFLEGFTAL 125 (206)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444555554444444443333334455555555555444445555555444
Done!