Query 031230
Match_columns 163
No_of_seqs 135 out of 1246
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wme_A BADH, betaine aldehyde 100.0 2.2E-32 7.5E-37 227.5 15.9 148 7-163 4-152 (490)
2 3iwj_A Putative aminoaldehyde 100.0 5.9E-31 2E-35 219.7 20.1 159 5-163 3-161 (503)
3 3rh9_A Succinate-semialdehyde 100.0 5.4E-30 1.8E-34 213.9 20.3 147 8-163 10-157 (506)
4 3ed6_A Betaine aldehyde dehydr 100.0 8.3E-30 2.8E-34 213.4 19.6 147 9-163 32-180 (520)
5 3k2w_A Betaine-aldehyde dehydr 100.0 6.1E-30 2.1E-34 213.3 18.2 149 7-163 10-158 (497)
6 3ifg_A Succinate-semialdehyde 100.0 9.5E-30 3.2E-34 211.5 18.4 147 9-163 12-158 (484)
7 3prl_A NADP-dependent glyceral 100.0 9.4E-30 3.2E-34 212.4 18.0 157 1-163 1-162 (505)
8 3ek1_A Aldehyde dehydrogenase; 100.0 1.2E-29 4.1E-34 211.7 17.5 146 10-163 33-178 (504)
9 4f3x_A Putative aldehyde dehyd 100.0 1.2E-29 4.1E-34 211.5 17.5 146 9-163 25-171 (498)
10 1a4s_A ALDH, betaine aldehyde 100.0 2.4E-29 8.4E-34 209.9 19.0 146 9-163 19-165 (503)
11 2imp_A Lactaldehyde dehydrogen 100.0 1.4E-29 4.9E-34 210.2 17.2 147 9-163 6-152 (479)
12 3r31_A BADH, betaine aldehyde 100.0 1.4E-29 4.8E-34 211.8 17.0 151 1-163 3-160 (517)
13 3u4j_A NAD-dependent aldehyde 100.0 4.1E-29 1.4E-33 209.5 19.6 146 10-163 23-171 (528)
14 4dng_A Uncharacterized aldehyd 100.0 7.3E-29 2.5E-33 206.3 19.6 147 9-163 6-153 (485)
15 3jz4_A Succinate-semialdehyde 100.0 5.9E-29 2E-33 206.6 18.4 147 9-163 9-155 (481)
16 2d4e_A 5-carboxymethyl-2-hydro 100.0 4.1E-29 1.4E-33 209.0 17.2 146 10-163 27-172 (515)
17 4e4g_A Methylmalonate-semialde 100.0 2.6E-29 8.9E-34 210.4 15.8 146 10-163 27-172 (521)
18 2o2p_A Formyltetrahydrofolate 100.0 6.8E-29 2.3E-33 207.7 17.9 150 10-163 37-188 (517)
19 3r64_A NAD dependent benzaldeh 100.0 5.4E-29 1.8E-33 208.0 17.1 150 6-163 9-158 (508)
20 2w8n_A Succinate-semialdehyde 100.0 1.6E-28 5.5E-33 204.3 19.7 144 10-163 13-156 (487)
21 3b4w_A Aldehyde dehydrogenase; 100.0 8.1E-29 2.8E-33 206.4 17.8 148 9-163 8-156 (495)
22 1wnd_A Putative betaine aldehy 100.0 6.4E-29 2.2E-33 207.0 16.9 145 10-163 24-169 (495)
23 2ve5_A BADH, betaine aldehyde 100.0 7.9E-29 2.7E-33 206.3 15.9 147 8-163 5-152 (490)
24 1bxs_A Aldehyde dehydrogenase; 100.0 2.9E-28 9.9E-33 203.3 19.2 148 10-163 21-169 (501)
25 1t90_A MMSDH, probable methylm 100.0 1.3E-28 4.5E-33 204.7 16.8 146 10-163 6-151 (486)
26 1euh_A NADP dependent non phos 100.0 1.4E-28 4.8E-33 204.1 16.8 144 10-163 5-153 (475)
27 3qan_A 1-pyrroline-5-carboxyla 100.0 2.9E-28 9.8E-33 204.8 18.7 144 9-163 37-182 (538)
28 3i44_A Aldehyde dehydrogenase; 100.0 1.9E-28 6.4E-33 204.2 17.0 144 10-163 26-171 (497)
29 2j6l_A Aldehyde dehydrogenase 100.0 3.5E-28 1.2E-32 202.8 17.5 145 9-163 23-167 (500)
30 3pqa_A Lactaldehyde dehydrogen 100.0 2.5E-28 8.7E-33 203.0 16.0 139 12-163 2-140 (486)
31 3ty7_A Putative aldehyde dehyd 100.0 2.6E-28 9E-33 202.6 16.1 142 9-163 7-149 (478)
32 1uzb_A 1-pyrroline-5-carboxyla 100.0 6.1E-28 2.1E-32 202.0 17.8 145 10-163 38-183 (516)
33 1o04_A Aldehyde dehydrogenase, 100.0 5.7E-28 1.9E-32 201.5 17.1 147 11-163 21-168 (500)
34 3ju8_A Succinylglutamic semial 100.0 5.1E-28 1.8E-32 201.4 16.4 143 11-163 7-149 (490)
35 1uxt_A Glyceraldehyde-3-phosph 99.9 3.3E-27 1.1E-31 196.9 16.3 147 10-163 19-167 (501)
36 3v4c_A Aldehyde dehydrogenase 99.9 1.4E-26 4.7E-31 194.3 18.2 145 9-163 29-179 (528)
37 4f9i_A Proline dehydrogenase/d 99.9 2.1E-26 7E-31 204.4 16.5 145 9-163 531-676 (1026)
38 2y53_A Aldehyde dehydrogenase 99.9 6.1E-26 2.1E-30 190.6 15.5 147 10-163 8-161 (534)
39 4e3x_A Delta-1-pyrroline-5-car 99.9 4.1E-26 1.4E-30 192.4 14.2 145 9-163 63-210 (563)
40 3ros_A NAD-dependent aldehyde 99.9 1.1E-25 3.7E-30 187.1 15.4 129 26-163 5-133 (484)
41 4h7n_A Aldehyde dehydrogenase; 99.9 1.5E-25 5.1E-30 185.9 14.9 134 22-163 3-136 (474)
42 3etf_A Putative succinate-semi 99.9 2.5E-25 8.6E-30 184.0 16.1 132 23-163 5-136 (462)
43 1ez0_A ALDH, aldehyde dehydrog 99.9 1.2E-24 4.2E-29 181.8 16.2 136 22-163 4-146 (510)
44 3lns_A Benzaldehyde dehydrogen 99.9 1.9E-24 6.5E-29 178.5 15.3 134 25-163 6-140 (457)
45 2h5g_A Delta 1-pyrroline-5-car 99.9 2.7E-23 9.3E-28 171.8 7.5 131 27-163 9-150 (463)
46 3sza_A Aldehyde dehydrogenase, 99.8 4.9E-20 1.7E-24 152.6 14.2 115 44-163 15-130 (469)
47 3haz_A Proline dehydrogenase; 99.8 3E-19 1E-23 158.4 13.8 118 39-163 542-659 (1001)
48 3my7_A Alcohol dehydrogenase/a 99.7 3.7E-17 1.3E-21 134.8 11.9 111 41-163 1-113 (452)
49 1o20_A Gamma-glutamyl phosphat 99.7 1.4E-17 4.8E-22 136.4 9.2 112 45-163 12-135 (427)
50 4ghk_A Gamma-glutamyl phosphat 99.7 5.2E-17 1.8E-21 133.7 10.4 111 46-163 25-147 (444)
51 1vlu_A Gamma-glutamyl phosphat 99.7 1.4E-17 4.9E-22 137.8 6.6 111 48-163 15-136 (468)
52 3k9d_A LMO1179 protein, aldehy 99.7 6.5E-17 2.2E-21 133.7 9.2 114 39-163 4-118 (464)
53 1use_A VAsp, vasodilator-stimu 76.5 3.7 0.00013 22.3 3.4 29 76-104 13-41 (45)
54 3fgh_A Transcription factor A, 61.6 9.3 0.00032 21.9 3.4 37 55-96 29-65 (67)
55 1mul_A NS2, HU-2, DNA binding 57.6 27 0.00093 21.3 5.2 38 90-127 2-39 (90)
56 1b8z_A Protein (histonelike pr 56.3 27 0.00093 21.3 5.1 38 90-127 2-39 (90)
57 1p71_A DNA-binding protein HU; 54.8 30 0.001 21.3 5.1 38 90-127 2-39 (94)
58 2o97_B NS1, HU-1, DNA-binding 52.8 32 0.0011 21.0 5.0 38 90-127 2-39 (90)
59 1v63_A Nucleolar transcription 52.6 27 0.00092 22.0 4.7 40 55-99 37-76 (101)
60 3c4i_A DNA-binding protein HU 52.1 34 0.0012 21.3 5.1 38 90-127 2-39 (99)
61 2eqz_A High mobility group pro 51.2 24 0.0008 21.3 4.1 37 55-96 48-84 (86)
62 1owf_A IHF-alpha, integration 50.2 38 0.0013 21.1 5.1 38 90-127 4-41 (99)
63 3rhi_A DNA-binding protein HU; 48.8 27 0.00093 21.5 4.2 38 90-127 5-42 (93)
64 2qgu_A Probable signal peptide 47.7 13 0.00046 26.8 2.9 23 67-89 85-107 (211)
65 2iie_A Integration HOST factor 47.5 71 0.0024 22.8 6.8 60 69-128 17-86 (204)
66 1owf_B IHF-beta, integration H 46.0 49 0.0017 20.2 5.3 38 90-127 2-40 (94)
67 1gt0_D Transcription factor SO 44.2 25 0.00086 20.8 3.4 28 67-94 40-67 (80)
68 2crj_A SWI/SNF-related matrix- 42.8 28 0.00095 21.3 3.5 38 55-97 38-75 (92)
69 1hry_A Human SRY; DNA, DNA-bin 41.6 24 0.00081 20.6 2.9 27 67-93 42-68 (76)
70 2co9_A Thymus high mobility gr 40.9 64 0.0022 20.1 5.8 35 67-101 55-89 (102)
71 4ehp_B Catenin alpha-1; adhere 40.3 74 0.0025 20.6 5.9 51 68-120 50-100 (111)
72 1v64_A Nucleolar transcription 38.6 34 0.0012 21.8 3.5 40 55-99 44-83 (108)
73 1j46_A SRY, sex-determining re 38.3 35 0.0012 20.5 3.4 28 67-94 42-69 (85)
74 4dnd_A Syntaxin-10, SYN10; str 37.9 51 0.0017 21.9 4.4 45 44-94 81-128 (130)
75 2lef_A LEF-1 HMG, protein (lym 36.5 40 0.0014 20.2 3.5 28 67-94 40-67 (86)
76 2cs1_A PMS1 protein homolog 1; 35.9 12 0.0004 23.1 0.9 39 55-98 38-76 (92)
77 3u2b_C Transcription factor SO 35.4 25 0.00084 20.7 2.3 28 67-94 40-67 (79)
78 4euw_A Transcription factor SO 35.0 41 0.0014 21.2 3.5 35 55-94 60-94 (106)
79 1exe_A Transcription factor 1; 34.6 38 0.0013 21.1 3.2 38 91-128 3-40 (99)
80 1hme_A High mobility group pro 34.4 21 0.00072 20.9 1.9 35 56-95 38-72 (77)
81 1ckt_A High mobility group 1 p 33.5 24 0.00082 20.2 2.0 35 55-94 34-68 (71)
82 3bej_E Nuclear receptor coacti 33.1 32 0.0011 16.0 1.9 16 69-84 4-19 (26)
83 2np2_A HBB; protein-DNA comple 32.8 80 0.0027 19.9 4.6 38 90-127 10-52 (108)
84 3nok_A Glutaminyl cyclase; bet 31.5 43 0.0015 25.2 3.5 33 13-45 188-221 (268)
85 3nol_A Glutamine cyclotransfer 31.2 49 0.0017 24.7 3.8 23 23-45 190-212 (262)
86 3f27_D Transcription factor SO 31.1 30 0.001 20.5 2.2 28 67-94 44-71 (83)
87 1aab_A High mobility group pro 30.0 40 0.0014 20.0 2.7 35 56-95 41-75 (83)
88 4a3n_A Transcription factor SO 29.3 21 0.00071 20.4 1.2 27 67-93 40-66 (71)
89 2e6o_A HMG box-containing prot 28.9 46 0.0016 20.0 2.8 27 67-93 55-81 (87)
90 3mbr_X Glutamine cyclotransfer 28.3 52 0.0018 24.3 3.5 32 13-44 157-189 (243)
91 4ds1_A Dynein light chain 1, c 28.0 1.1E+02 0.0036 19.1 4.5 31 31-61 8-38 (97)
92 2l2l_A Transcriptional repress 27.5 73 0.0025 16.7 4.3 23 72-94 2-24 (43)
93 2l3i_A Aoxki4A, antimicrobial 27.1 57 0.002 15.3 2.4 22 67-90 7-28 (30)
94 2lhj_A High mobility group pro 26.0 43 0.0015 20.7 2.3 39 55-98 55-93 (97)
95 4gm2_A ATP-dependent CLP prote 25.0 91 0.0031 22.4 4.2 31 80-110 148-178 (205)
96 3nme_A Ptpkis1 protein, SEX4 g 24.2 88 0.003 23.5 4.2 65 10-83 221-286 (294)
97 1k99_A Upstream binding factor 22.8 35 0.0012 21.3 1.4 30 67-96 48-77 (99)
98 1hcw_A BBA1; growth response p 22.7 33 0.0011 15.6 0.9 15 90-104 11-25 (26)
99 1i11_A Transcription factor SO 22.1 45 0.0016 19.6 1.8 25 67-91 42-66 (81)
100 1l8y_A Upstream binding factor 22.0 89 0.003 19.4 3.2 37 55-96 34-70 (91)
101 2gzk_A Sex-determining region 21.4 93 0.0032 20.8 3.5 30 67-96 126-155 (159)
102 2ke4_A CDC42-interacting prote 21.3 1.4E+02 0.0048 18.7 4.1 24 67-90 7-30 (98)
103 1wz6_A HMG-box transcription f 20.9 87 0.003 18.4 3.0 25 67-91 45-69 (82)
104 1aie_A P53; oligomer, DNA; 1.5 20.7 91 0.0031 15.3 2.6 16 73-88 9-24 (31)
No 1
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=2.2e-32 Score=227.47 Aligned_cols=148 Identities=35% Similarity=0.578 Sum_probs=137.2
Q ss_pred CCCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Q 031230 7 IPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAK 86 (163)
Q Consensus 7 ~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~ 86 (163)
....++||||+|+.+.++.+++++||+||+++++++.++.+|++.||++|++||+ .|+.+|..+|.++|.+++++
T Consensus 4 ~~~~kl~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~A~~-----~W~~~~~~~R~~~L~~~a~~ 78 (490)
T 2wme_A 4 FEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQK-----VWAAMTAMQRSRILRRAVDI 78 (490)
T ss_dssp SCCBCEECSSSEECCSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEECCeeeCCCCCCEEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHH
Confidence 4456899999999988889999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHhHHHHHHHHHHHcCCCHHHHHH-hHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 87 ITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 87 l~~~~~~la~~~~~e~Gkp~~~a~~-ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|++|+++|+.+++.|+|||+.++.. |+..+++.++||+.+++++.+.. .+.. .+...+++|+|+|||++|+||
T Consensus 79 l~~~~~ela~~~~~e~Gk~~~ea~~~~v~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~~~P~GVv~~I~Pw 152 (490)
T 2wme_A 79 LRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQ---IPLR-ETSFVYTRREPLGVVAGIGAW 152 (490)
T ss_dssp HHHTHHHHHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHHHGGGCCEEE---EEEE-TTEEEEEEEEECSEEEEECCS
T ss_pred HHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhccccccCcc---cccc-CCcceeEEecceeEEEEeccc
Confidence 9999999999999999999999986 79999999999999999887764 2222 467789999999999999999
No 2
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=99.98 E-value=5.9e-31 Score=219.66 Aligned_cols=159 Identities=77% Similarity=1.319 Sum_probs=140.3
Q ss_pred cCCCCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH
Q 031230 5 IPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIA 84 (163)
Q Consensus 5 ~~~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~ 84 (163)
++.+..++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||..+++..|+.++..+|.++|.+++
T Consensus 3 ~~~~~~~~~i~g~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a 82 (503)
T 3iwj_A 3 IPIPTRQLFINGDWKAPVLNKRIPVINPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIA 82 (503)
T ss_dssp -CCCCCCEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHH
T ss_pred CCCCCCceeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHH
Confidence 44556789999999988778899999999999999999999999999999999999844333699999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 85 AKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 85 ~~l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
++|++|+++|+.+++.|+|||..++..|+..+++.++|++.+++++.+....+.+....+...++.|+|+|||++|+||
T Consensus 83 ~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~Pw 161 (503)
T 3iwj_A 83 AKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPW 161 (503)
T ss_dssp HHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCC
Confidence 9999999999999999999999999999999999999999999988775422222222456789999999999999999
No 3
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=99.97 E-value=5.4e-30 Score=213.88 Aligned_cols=147 Identities=29% Similarity=0.522 Sum_probs=136.5
Q ss_pred CCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 8 PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 8 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
...++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|
T Consensus 10 ~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l 84 (506)
T 3rh9_A 10 ENLTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSMPEEDVVAAVEAGQSALR-----LTNPWPIETRRKWLEDIRDGL 84 (506)
T ss_dssp SCCSEEETTEEECCCTTCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHCC-----SSSCCCHHHHHHHHHHHHHHH
T ss_pred cccCeeECCEEeeCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHH
Confidence 456899999999887788999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEE-eccceEEEEccC
Q 031230 88 TERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLK-EPIGVVGLITPW 163 (163)
Q Consensus 88 ~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r-~P~GVV~~IsPw 163 (163)
++|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+.. .+...++.| +|+|||++|+||
T Consensus 85 ~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~~~~---~~~~-~~~~~~~~~~~P~GVV~~I~Pw 157 (506)
T 3rh9_A 85 KENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKHISALDSHT---IPEK-PKDCTWTVHYRPVGVTGLIVPW 157 (506)
T ss_dssp HHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGGCCEE---CSCC-GGGCEEEEEEEECCSEEEECCS
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccC-CCceeeEeecccceEEEEECCC
Confidence 99999999999999999999999999999999999999999988763 2222 356788999 999999999999
No 4
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=99.97 E-value=8.3e-30 Score=213.36 Aligned_cols=147 Identities=42% Similarity=0.703 Sum_probs=135.7
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHh--hccCCCCCCCCCHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQAL--SRNKGKDWSSASGAFRAKYLRAIAAK 86 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~--~~~~~~~w~~~~~~~R~~~L~~~~~~ 86 (163)
.+++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++|| . .|+.++..+|.++|.+++++
T Consensus 32 ~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~~~~~dv~~Av~aA~~A~~~~-----~w~~~~~~~R~~~L~~~a~~ 106 (520)
T 3ed6_A 32 SQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFESG-----EWSQETAETRGKKVRAIADK 106 (520)
T ss_dssp CCSEEETTEEECCTTCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHT-----TTTTSCHHHHHHHHHHHHHH
T ss_pred CCceEECCEEecCCCCCEEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHhcccc-----ccccCCHHHHHHHHHHHHHH
Confidence 4578999999988778899999999999999999999999999999999999 8 99999999999999999999
Q ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 87 ITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 87 l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|++|+++|+.+++.|+|||..++..|+..+++.++|++.+++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 107 l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 180 (520)
T 3ed6_A 107 IKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFAGLADKDGGEM---IDSPIPDTESKIVKEPVGVVTQITPW 180 (520)
T ss_dssp HHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEE---ECCSSTTEEEEEEEEECCEEEEECCS
T ss_pred HHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCee---cccCCCCCcccccccCccEEEEECCC
Confidence 999999999999999999999999999999999999999999887753 22222466789999999999999999
No 5
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=99.97 E-value=6.1e-30 Score=213.29 Aligned_cols=149 Identities=31% Similarity=0.454 Sum_probs=137.4
Q ss_pred CCCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Q 031230 7 IPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAK 86 (163)
Q Consensus 7 ~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~ 86 (163)
....++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++
T Consensus 10 ~~~~~~~I~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~ 84 (497)
T 3k2w_A 10 FKNKVNFIGGQYVPSNESDTIDILSPSTGKVIGEIPAGCKADAENALEVAQAAQK-----AWAKLTARTRQNMLRTFANK 84 (497)
T ss_dssp CCTTCEEETTEEECCSSCCEEEEECSSSCSEEEEEECCCHHHHHHHHHHHHHHHH-----HHHTSCHHHHHHHHHHHHHH
T ss_pred ccccceeECCEEecCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHH
Confidence 3446899999999887778999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 87 ITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 87 l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|++|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 85 l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 158 (497)
T 3k2w_A 85 IRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDNALTIEGDI---LPSDNQDEKIYIHKVPRGVVVGITAW 158 (497)
T ss_dssp HHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTTTCCEEE---EECSSTTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCCCCcceeEEEcCCceEEEECCC
Confidence 999999999999999999999999999999999999999999988763 22222467789999999999999999
No 6
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=99.97 E-value=9.5e-30 Score=211.50 Aligned_cols=147 Identities=31% Similarity=0.522 Sum_probs=135.4
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
..++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|+
T Consensus 12 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 86 (484)
T 3ifg_A 12 RHQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWA-----GWRMKTAKERAAILRRWFDLVI 86 (484)
T ss_dssp CCSEEETTEEECCTTCCEEEEECTTTCCEEEEEECBCHHHHHHHHHHHHHHHH-----HHHTSCHHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEeeCCCCCEEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHH
Confidence 35789999999877788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++..|+..+++.++||+...+++.+.. .+....+...++.|+|+|||++|+||
T Consensus 87 ~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 158 (484)
T 3ifg_A 87 ANSDDLALILTTEQGKPLAEAKGEIAYAASFIEWFAEEGKRVAGDT---LPTPDANKRIVVVKEPIGVCAAITPW 158 (484)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEE---ECCSSTTEEEEEEEEECSSEEEECCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---ccccCCCceeEEEecCCcEEEEECCC
Confidence 9999999999999999999999999999999999999988877653 22222466789999999999999999
No 7
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=99.97 E-value=9.4e-30 Score=212.44 Aligned_cols=157 Identities=29% Similarity=0.380 Sum_probs=134.9
Q ss_pred CCcccCC--CCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 031230 1 MAMAIPI--PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAK 78 (163)
Q Consensus 1 m~~~~~~--~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~ 78 (163)
|.++... ...++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.+
T Consensus 1 ~~~~~~~~~~~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~ 75 (505)
T 3prl_A 1 MVMALQTEQFNANILRNGEWVESRTGERISISAPASGVALGSIPALSQEEVNDAIQGAKDAQK-----IWKIRPIHERVD 75 (505)
T ss_dssp --------CEECCEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHH
T ss_pred CCccccCCccccCeeECCEEecCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHH
Confidence 4444443 235889999999887778999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCC---CceeEEEEeccc
Q 031230 79 YLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME---NFKSYVLKEPIG 155 (163)
Q Consensus 79 ~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~r~P~G 155 (163)
+|.+++++|++|+++|+.+++.|+|||..++..||..+++.++|+++++.++.+... +...... +...++.|+|+|
T Consensus 76 ~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~P~G 154 (505)
T 3prl_A 76 LLYAWADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADIIRHTADEALRLNGETL-KGDQFKGGSSKKIALVEREPLG 154 (505)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE-EGGGSTTTCSSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccccccccCCceeEEEEcCCc
Confidence 999999999999999999999999999999999999999999999999998877531 1111001 456899999999
Q ss_pred eEEEEccC
Q 031230 156 VVGLITPW 163 (163)
Q Consensus 156 VV~~IsPw 163 (163)
||++|+||
T Consensus 155 VV~~I~Pw 162 (505)
T 3prl_A 155 VVLAISPF 162 (505)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99999999
No 8
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=99.97 E-value=1.2e-29 Score=211.69 Aligned_cols=146 Identities=29% Similarity=0.530 Sum_probs=134.8
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|++
T Consensus 33 ~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~~~~~dv~~Av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 107 (504)
T 3ek1_A 33 SQCLVNGRWIDAADGTTIKVTNPADGSVIGTVPSLSVATIKEAIDASAKALS-----GWAAKTAKERAGILRKWFDLIIA 107 (504)
T ss_dssp SSEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCeEECCEEeeCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----hhccCCHHHHHHHHHHHHHHHHH
Confidence 4789999999887788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..|+..+++.++||+.+..++.+.. .+....+...++.|+|+|||++|+||
T Consensus 108 ~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 178 (504)
T 3ek1_A 108 NADDIALIMTSEQGKPLAEARGEVLYAASFIEWFAEEAKRVYGDT---IPAPQNGQRLTVIRQPVGVTAAITPW 178 (504)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEE---ECCSSTTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccccccccceeeccCceEEEEECCC
Confidence 999999999999999999999999999999999999998876653 22222456789999999999999999
No 9
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=99.97 E-value=1.2e-29 Score=211.48 Aligned_cols=146 Identities=30% Similarity=0.550 Sum_probs=133.7
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
..++||||+|+.+.++ +++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|+
T Consensus 25 ~~~~~I~G~~~~~~~~-~~~v~nP~tg~~i~~v~~~~~~dv~~Av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 98 (498)
T 4f3x_A 25 DTQLLIGSRFEAGTEA-EEHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFV-----GWSQTTPAERSNALLKIADAIE 98 (498)
T ss_dssp CCCEEETTEEECCCSC-EEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCeeECCEEeeCCCC-eEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHH
Confidence 4588999999987666 899999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHH-HHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a-~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++ ..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 99 ~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~l~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 171 (498)
T 4f3x_A 99 KEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAGAVRNLHAPA---AGEYLPGHTSMIRRDPIGIVGSIAPW 171 (498)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTCCEEEC---BEEEETTEEEEEEEEECCEEEEECCS
T ss_pred HhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHhcCcc---ccCCcccccceEEEcCcceEEEECCC
Confidence 999999999999999999999 7899999999999999998877653 22112466789999999999999999
No 10
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=99.97 E-value=2.4e-29 Score=209.88 Aligned_cols=146 Identities=32% Similarity=0.542 Sum_probs=133.6
Q ss_pred CccceeCceEecCCCCCe-eeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKR-IPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~-~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
..++||||+|+.+.++.+ ++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|
T Consensus 19 ~~~~~i~g~~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l 93 (503)
T 1a4s_A 19 DDLNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYL-----KWSKMAGIERSRVMLEAARII 93 (503)
T ss_dssp SCCEEETTEEECCCTTCCCEEEECTTTCCEEEEECCCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEecCCCCCceEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----hcccCCHHHHHHHHHHHHHHH
Confidence 357899999998766677 99999999999999999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 88 TERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 88 ~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
++|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+.. .+...++.|+|+|||++|+||
T Consensus 94 ~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~-~~~~~~~~~~P~GVv~~I~Pw 165 (503)
T 1a4s_A 94 RERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLSGQH---IQLP-GGAFAYTRREPLGVCAGILAW 165 (503)
T ss_dssp HHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCEEE---EECG-GGCEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCC-CCceeEEEEecCceEEEECCC
Confidence 99999999999999999999998899999999999999999887653 1222 244679999999999999999
No 11
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=99.97 E-value=1.4e-29 Score=210.23 Aligned_cols=147 Identities=30% Similarity=0.462 Sum_probs=134.5
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
..++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|+
T Consensus 6 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 80 (479)
T 2imp_A 6 QHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQP-----EWEALPAIERASWLRKISAGIR 80 (479)
T ss_dssp ECCEEETTEEECCCCSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHHH
Confidence 34789999999876677899999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 81 ~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 152 (479)
T 2imp_A 81 ERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEI---IQSDRPGENILLFKRALGVTTGILPW 152 (479)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTTTTCCCEE---ECCSSTTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCc---cccCCCCceeEEEEeccceEEEECCC
Confidence 9999999999999999999999999999999999999998887763 22222355789999999999999999
No 12
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=99.97 E-value=1.4e-29 Score=211.83 Aligned_cols=151 Identities=30% Similarity=0.509 Sum_probs=132.4
Q ss_pred CCcccC--C-CCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 031230 1 MAMAIP--I-PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRA 77 (163)
Q Consensus 1 m~~~~~--~-~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~ 77 (163)
|.+.++ . ...++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~ 77 (517)
T 3r31_A 3 MTIATPLKAQPKASHFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQK-----EWAAMSPMARG 77 (517)
T ss_dssp -----CCTTCCSSSEEETTEEECCTTSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHH
T ss_pred cccCChhhcccccCeeECCEEecCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-----HhhhCCHHHHH
Confidence 555555 2 236899999999877788999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhh----hccccccccCCCCCCceeEEEEec
Q 031230 78 KYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEG----LDAKQKAPVSLPMENFKSYVLKEP 153 (163)
Q Consensus 78 ~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~r~P 153 (163)
++|.+++++|++|+++|+.+++.|+|||..++ ||..+++.++|+++++++ +.+.. .+.. .+. .++.|+|
T Consensus 78 ~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea--ev~~~~~~~~~~a~~~~~~~~~~~g~~---~~~~-~~~-~~~~~~P 150 (517)
T 3r31_A 78 RILKRAADIMRERNDALSTLETLDTGKPIQET--IVADPTSGADAFEFFGGIAPSALNGDY---IPLG-GDF-AYTKRVP 150 (517)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHH--HHHSHHHHHHHHHHHHHHHHHHTCCCE---EECS-SSE-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHhhhccccccCcc---cccC-CCc-ceEEEcC
Confidence 99999999999999999999999999999999 999999999999999887 55543 2222 344 8999999
Q ss_pred cceEEEEccC
Q 031230 154 IGVVGLITPW 163 (163)
Q Consensus 154 ~GVV~~IsPw 163 (163)
+|||++|+||
T Consensus 151 ~GVV~~I~Pw 160 (517)
T 3r31_A 151 LGVCVGIGAW 160 (517)
T ss_dssp CSEEEEECCS
T ss_pred ccEEEEECCC
Confidence 9999999999
No 13
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=99.97 E-value=4.1e-29 Score=209.51 Aligned_cols=146 Identities=36% Similarity=0.578 Sum_probs=134.9
Q ss_pred ccceeCceEecCCCCCeeeeecCCC-CCeeeEecCCCHHHHHHHHHHHHHHh--hccCCCCCCCCCHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTT-EEIVGDIPAATAEDVELAVDAARQAL--SRNKGKDWSSASGAFRAKYLRAIAAK 86 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~t-g~~~~~~~~~~~~~i~~av~~a~~a~--~~~~~~~w~~~~~~~R~~~L~~~~~~ 86 (163)
.++||||+|+.+.++.+++++||+| |+++++++.++.+|++.|+++|++|| . .|+.++..+|.++|.+++++
T Consensus 23 ~~~~I~G~~~~~~~~~~~~v~nP~t~g~~i~~~~~~~~~dv~~av~aA~~A~~~~-----~w~~~~~~~R~~~L~~~a~~ 97 (528)
T 3u4j_A 23 YQMLVDGKSVDAASGSTIDRVSPGHAGEVVGTWPEASADDVRKAVAAARKAFDAG-----PWPRMSGAERSRLMFKVADL 97 (528)
T ss_dssp CCEEETTEEECCTTCCEEEEECTTSTTCEEEEEECCCHHHHHHHHHHHHHHHHTS-----SGGGSCHHHHHHHHHHHHHH
T ss_pred cceeECCEEecCCCCCEEEEeCCCCCCcEEEEEeCCCHHHHHHHHHHHHHhcccc-----ccccCCHHHHHHHHHHHHHH
Confidence 5789999999887788999999999 99999999999999999999999999 7 89999999999999999999
Q ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 87 ITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 87 l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|++|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 98 l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 171 (528)
T 3u4j_A 98 ILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQARALEGQT---HNNIGDDRLGLVLREPVGVVGIITPW 171 (528)
T ss_dssp HHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEE---ECCSCTTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCee---eccCCCCceeEEEeccceEEEEECCC
Confidence 999999999999999999999998899999999999999999887653 22222466789999999999999999
No 14
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=99.96 E-value=7.3e-29 Score=206.27 Aligned_cols=147 Identities=18% Similarity=0.355 Sum_probs=134.9
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
.+++||||+|+.+.++.+++++||+||+++++++.++.++++.|++.|++||+ .|+.++..+|.++|.+++++|+
T Consensus 6 ~~~~~i~g~~~~~~~~~~~~~~~P~t~~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 80 (485)
T 4dng_A 6 LNKSFINGKWTGGESGRTEDILNPYDQSVITTASLATGKQLEDAFDIAQKAQK-----EWAKSTTEDRKAVLQKARGYLH 80 (485)
T ss_dssp CCSEEETTEEECCSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhCcCCHHHHHHHHHHHHHHHH
Confidence 35789999999877788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCC-CCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLP-MENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++..|+..+++.++|++++++.+.+.. .+.. ..+...++.|+|+|||++|+||
T Consensus 81 ~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~P~GVv~~I~Pw 153 (485)
T 4dng_A 81 ENRDDIIMMIARETGGTIIKSTIELEQTIAILDEAMTYTGELGGVK---EVPSDIEGKTNKIYRLPLGVISSISPF 153 (485)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCSCEE---CCCCSSTTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee---ccccCCCCceEEEEEecceEEEEECCC
Confidence 9999999999999999999999999999999999999998776653 2211 2357789999999999999999
No 15
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=99.96 E-value=5.9e-29 Score=206.63 Aligned_cols=147 Identities=33% Similarity=0.558 Sum_probs=135.1
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
..++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|+
T Consensus 9 ~~~~~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 83 (481)
T 3jz4_A 9 RQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALP-----AWRALTAKERATILRNWFNLMM 83 (481)
T ss_dssp CCSEEETTEEECCTTCCEEEEECTTTCCEEEEEECBCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----hcccCCHHHHHHHHHHHHHHHH
Confidence 45789999999887788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++..|+..+++.++|++....+..+.. .+....+...++.|+|+|||++|+||
T Consensus 84 ~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 155 (481)
T 3jz4_A 84 EHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDT---IPGHQADKRLIVIKQPIGVTAAITPW 155 (481)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCEEE---ECCSSTTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccccCCCceEEEEEcCccEEEEECCC
Confidence 9999999999999999999999999999999999999988776653 22222466789999999999999999
No 16
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=99.96 E-value=4.1e-29 Score=209.04 Aligned_cols=146 Identities=30% Similarity=0.499 Sum_probs=134.1
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|++
T Consensus 27 ~~~~i~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~dv~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 101 (515)
T 2d4e_A 27 ALHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQ-----RWSRTKAKERKRYLLRIAELIEK 101 (515)
T ss_dssp BCEEETTEEECCTTCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCeeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHH
Confidence 4689999999876678899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 102 ~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 172 (515)
T 2d4e_A 102 HADELAVMECLDAGQVLRIVRAQVARAAENFAFYAEYAEHAMEDR---TFPVDRDWLYYTVRVPAGPVGIITPW 172 (515)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTGGGTTCEE---ECCBTTTEEEEEEEEECCCEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCCCCceeEEEEecCCceEEECCC
Confidence 999999999999999999999999999999999999999887753 22212356789999999999999999
No 17
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=99.96 E-value=2.6e-29 Score=210.39 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=133.5
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|++
T Consensus 27 ~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 101 (521)
T 4e4g_A 27 LGHFIDGKRVAGTSGRVSNIFNPATGEVQGTVALASDADLAAAVESAKAAQP-----KWAATNPQRRARVFMKFVQLLND 101 (521)
T ss_dssp ECEEETTEEECCSSSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeeECCEEecCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHH
Confidence 5789999999887788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..||..+++.++||++....+.+.. .+....+...++.|+|+|||++|+||
T Consensus 102 ~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 172 (521)
T 4e4g_A 102 NMNELAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGIPHLQKSEF---TEGAGPGIDMYSIRQPVGIGAGITPF 172 (521)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHTHHHHTCEEE---EEEEETTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCCCCcceeEEEcCCcEEEEECCC
Confidence 999999999999999999999999999999999999877666542 11112356789999999999999999
No 18
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=99.96 E-value=6.8e-29 Score=207.71 Aligned_cols=150 Identities=27% Similarity=0.494 Sum_probs=132.9
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+.| .|+.++..+|.++|.+++++|++
T Consensus 37 ~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~av~aA~~A~~~g---~w~~~~~~~R~~~L~~~a~~l~~ 113 (517)
T 2o2p_A 37 YQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENG---LWGKINARDRGRLLYRLADVMEQ 113 (517)
T ss_dssp CSEEETTEEECCGGGCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHTS---GGGTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccC---ccccCCHHHHHHHHHHHHHHHHH
Confidence 368999999987566789999999999999999999999999999999999833 59999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHH-HhHHHHHHHHHHHHHhhhhhccccccccCC-CCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSL-PMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~-~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||+.++. .||..+++.++||+++++++.+.. .+... ...+...++.|+|+|||++|+||
T Consensus 114 ~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~-~~~~~~~~~~~~~~~~~~P~GVV~~I~Pw 188 (517)
T 2o2p_A 114 HQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGAT-IPINQARPNRNLTLTKKEPVGVCGIVIPW 188 (517)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHHHGGGCCEEE-ECCCCCTTSCEEEEEEEEECCEEEEECCS
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccccccCCCCceEEEEecCCccEEEECCC
Confidence 999999999999999999998 799999999999999999887753 11110 01234679999999999999999
No 19
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=99.96 E-value=5.4e-29 Score=208.05 Aligned_cols=150 Identities=22% Similarity=0.374 Sum_probs=136.3
Q ss_pred CCCCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 031230 6 PIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAA 85 (163)
Q Consensus 6 ~~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~ 85 (163)
..+.+++||||+|+.+.++.+++++||+||+++++++.++.++++.|++.|++||+ .|+.++..+|.++|.++++
T Consensus 9 ~~~~~~~~I~G~~~~~~~~~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~ 83 (508)
T 3r64_A 9 GIDATKHLIGGQWVEGNSDRISTNINPYDDSVIAESKQASIADVDAAYEAAKKAQA-----EWAATPAAERSAIIYRAAE 83 (508)
T ss_dssp TBCTTSEEETTEEECCCSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHH
T ss_pred CccccceeECCEEecCCCCCEEEeECCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-----HhCcCCHHHHHHHHHHHHH
Confidence 34557899999999887788999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 86 KITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 86 ~l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|++|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+ . .+.. ...+...++.|+|+|||++|+||
T Consensus 84 ~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~~~~~~~-~-~~~~-~~~~~~~~~~~~P~GVv~~I~Pw 158 (508)
T 3r64_A 84 LLEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVHG-R-ISPS-NTPGKENRVYRVAKGVVGVISPW 158 (508)
T ss_dssp HHHHTHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTSTTTCCE-E-EECC-SSTTEEEEEEEEECSEEEEECCS
T ss_pred HHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcC-c-cccc-CCCCceeEEEEecceEEEEECCC
Confidence 99999999999999999999999999999999999999999887665 2 1111 12357789999999999999999
No 20
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=99.96 E-value=1.6e-28 Score=204.28 Aligned_cols=144 Identities=29% Similarity=0.523 Sum_probs=131.8
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+. .+++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|++
T Consensus 13 ~~~~i~g~~~~~~--~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 85 (487)
T 2w8n_A 13 TDSFVGGRWLPAA--ATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFC-----RWREVSAKERSSLLRKWYNLMIQ 85 (487)
T ss_dssp CSEEETTEEECCS--CEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeeECCEEecCC--CeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHH
Confidence 5789999999764 7899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 86 ~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 156 (487)
T 2w8n_A 86 NKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI---IHTPAKDRRALVLKQPIGVAAVITPW 156 (487)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCCEE---ECCSCTTCEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCCCCceeEEEEecceEEEEECCC
Confidence 999999999999999999999999999999999999998876653 22212356789999999999999999
No 21
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=8.1e-29 Score=206.38 Aligned_cols=148 Identities=32% Similarity=0.516 Sum_probs=134.1
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
..++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||..| .|+.++..+|.++|.+++++|+
T Consensus 8 ~~~~~i~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~g---~w~~~~~~~R~~~L~~~a~~l~ 84 (495)
T 3b4w_A 8 YDKLFIGGKWTKPSTSDVIEVRCPATGEYVGKVPMAAAADVDAAVAAARAAFDNG---PWPSTPPHERAAVIAAAVKMLA 84 (495)
T ss_dssp CSSEEETTEEECCSSCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHS---STTTSCHHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccC---ccccCCHHHHHHHHHHHHHHHH
Confidence 3478999999987667789999999999999999999999999999999999843 5999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHH-HhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~-~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++. .||..+++.++|++++++++.+.. .+.+ .+...++.|+|+|||++|+||
T Consensus 85 ~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~---~~~~-~~~~~~~~~~P~GVv~~I~Pw 156 (495)
T 3b4w_A 85 ERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAADKVTWTE---TRTG-SYGQSIVSREPVGVVGAIVAW 156 (495)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHTCGGGSCSEE---EEEE-TTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCC-CCceEEEEEccCceEEEECCC
Confidence 9999999999999999999998 799999999999999999988763 2222 245679999999999999999
No 22
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=99.96 E-value=6.4e-29 Score=206.98 Aligned_cols=145 Identities=34% Similarity=0.587 Sum_probs=132.2
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.+ .+++++||+||+++++++.++.+|+++|+++|++||. .|+.++..+|.++|.+++++|++
T Consensus 24 ~~~~i~G~~~~~~~-~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 97 (495)
T 1wnd_A 24 HKLLINGELVSGEG-EKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFA-----EWGQTTPKVRAECLLKLADVIEE 97 (495)
T ss_dssp CCEEETTEEECCCS-CEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeEECCEEecCCC-CeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HhhhCCHHHHHHHHHHHHHHHHH
Confidence 57899999998655 7899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHH-hHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~-ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++.. |+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 98 ~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 169 (495)
T 1wnd_A 98 NGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLA---AGEYLEGHTSMIRRDPLGVVASIAPW 169 (495)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTCCEEEC---BEEEETTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccCCCCCceeEEeeecCCeEEEECCC
Confidence 9999999999999999999988 99999999999999998887653 12111345679999999999999999
No 23
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=99.96 E-value=7.9e-29 Score=206.30 Aligned_cols=147 Identities=35% Similarity=0.580 Sum_probs=135.4
Q ss_pred CCccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 8 PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 8 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
..+++||||+|+.+.++.+++++||+||+++++++.++.++++.++++|++||. .|+.++..+|.++|.+++++|
T Consensus 5 ~~~~~~I~G~~~~~~~~~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l 79 (490)
T 2ve5_A 5 EEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQK-----VWAAMTAMQRSRILRRAVDIL 79 (490)
T ss_dssp CCBCEECSSSEECCSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHH
T ss_pred ccCCeeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHH
Confidence 346899999999887788999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCHHHHHH-hHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 88 TERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 88 ~~~~~~la~~~~~e~Gkp~~~a~~-ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
++|+++|+.+++.|+|||..++.. |+..+++.++|+++++.++.+.. .+.. .+...++.|+|+|||++|+||
T Consensus 80 ~~~~~~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~~~P~GVv~~I~pw 152 (490)
T 2ve5_A 80 RERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQ---IPLR-ETSFVYTRREPLGVVAGIGAW 152 (490)
T ss_dssp HHTHHHHHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHHHGGGCCEEE---EEEE-TTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHhcCcc---ccCC-CCceeeEeeccccEEEEECCC
Confidence 999999999999999999999986 99999999999999998876653 2222 466789999999999999999
No 24
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=99.96 E-value=2.9e-28 Score=203.28 Aligned_cols=148 Identities=33% Similarity=0.615 Sum_probs=132.5
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+.| | .|+.++..+|.++|.+++++|++
T Consensus 21 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~-~-~w~~~~~~~R~~~L~~~a~~l~~ 98 (501)
T 1bxs_A 21 TKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIG-S-PWRTMDASERGRLLNKLADLIER 98 (501)
T ss_dssp CSEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHTSTT-S-HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCeeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhcc-c-chhhCCHHHHHHHHHHHHHHHHH
Confidence 467999999987667789999999999999999999999999999999999710 0 39999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHH-HhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~-~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++. .|+..+++.++||+++++++.+.. .+.. .+...++.|+|+|||++|+||
T Consensus 99 ~~~ela~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~-~~~~~~~~~~P~GVV~~I~Pw 169 (501)
T 1bxs_A 99 DRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRT---IPMD-GNFFTYTRSEPVGVCGQIIPW 169 (501)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHHHGGGCCEEE---ECCS-SSEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCe---eecc-CCcceeEEecCCceEEEECCC
Confidence 999999999999999999875 599999999999999999988763 2222 355679999999999999999
No 25
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=99.96 E-value=1.3e-28 Score=204.74 Aligned_cols=146 Identities=30% Similarity=0.469 Sum_probs=131.6
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
+++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++
T Consensus 6 ~~~~i~g~~~~~~~~~~~~~~~P~t~~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 80 (486)
T 1t90_A 6 LKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFK-----TWSKVAVPRRARILFNFQQLLSQ 80 (486)
T ss_dssp CCEEETTEEECCSCSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHT
T ss_pred cceeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HhhhCCHHHHHHHHHHHHHHHHH
Confidence 5789999999876677899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..|+..+++.++|++.....+.+.. .+....+...++.|+|+|||++|+||
T Consensus 81 ~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVV~~I~Pw 151 (486)
T 1t90_A 81 HKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDS---LASIATDVEAANYRYPIGVVGGIAPF 151 (486)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTHHHHHCEEE---EEEEETTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCCCCceeEEEecccCEEEEECCC
Confidence 999999999999999999999999999999999998776665542 11111355678999999999999999
No 26
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=99.96 E-value=1.4e-28 Score=204.11 Aligned_cols=144 Identities=25% Similarity=0.412 Sum_probs=130.7
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
+++||||+|+.+.+ +++++||+||+++++++.++.+|++.++++|++||. .|+.++..+|.++|.+++++|++
T Consensus 5 ~~~~i~g~~~~~~~--~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 77 (475)
T 1euh_A 5 YKNYVNGEWKLSEN--EIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQP-----AWRALSYIERAAYLHKVADILMR 77 (475)
T ss_dssp CCEEETTEEECCSS--EEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cceeECCEEecCCC--ceEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HhhhCCHHHHHHHHHHHHHHHHH
Confidence 47899999997643 899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCC----cee-EEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMEN----FKS-YVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~----~~~-~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+ ... ++.|+|+|||++|+||
T Consensus 78 ~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~P~GVv~~I~Pw 153 (475)
T 1euh_A 78 DKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEV---LEGGSFEAASKKKIAVVRREPVGLVLAISPF 153 (475)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEE---EEGGGTCGGGTTEEEEEEEEECSEEEEECCT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCCCccccceeeEEEEeccceEEEECCC
Confidence 999999999999999999998999999999999999998887653 1111123 456 8999999999999999
No 27
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=99.96 E-value=2.9e-28 Score=204.78 Aligned_cols=144 Identities=30% Similarity=0.439 Sum_probs=130.7
Q ss_pred CccceeCceEecCCCCCeeeeecCCC-CCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTT-EEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
.+++||||+|+. ++.+++++||+| |+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|
T Consensus 37 ~~~~~I~G~~~~--~~~~~~~~nP~t~~~~i~~~~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l 109 (538)
T 3qan_A 37 EYPLIINGERVT--TEDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQ-----TWRNVNPEERANILVKAAAII 109 (538)
T ss_dssp EECEEETTEEEC--CSSEEEEECSSSTTCEEEEEECBCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHH
T ss_pred ccceeECCEEec--CCCeEEEECCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHH-----hhccCCHHHHHHHHHHHHHHH
Confidence 357899999997 578899999999 999999999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh-hhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 88 TERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA-EGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 88 ~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
++|+++|+.+++.|+|||..++..|+..+++.|+|+++++ ....+.. .+.. .+...++.|+|+|||++|+||
T Consensus 110 ~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~~~~~~~~~~---~~~~-~~~~~~~~~~P~GVV~~I~Pw 182 (538)
T 3qan_A 110 RRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQMIELNRGKE---ILSR-PGEQNRYFYTPMGVTVTISPW 182 (538)
T ss_dssp HHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBC---CCCC-TTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCee---eccc-CCcceeeecCCCcEEEEECCC
Confidence 9999999999999999999999999999999999999994 4444442 2222 366789999999999999999
No 28
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=99.96 E-value=1.9e-28 Score=204.24 Aligned_cols=144 Identities=26% Similarity=0.517 Sum_probs=131.1
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.++||||+|+.+.++.+++++||+||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|++
T Consensus 26 ~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~~~~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~ 100 (497)
T 3i44_A 26 RKFYINGLWDDPSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQ-----TWKTTSPHERLGFVEKILEIYEK 100 (497)
T ss_dssp CCEEETTEEECCSSCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCeeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HHccCCHHHHHHHHHHHHHHHHH
Confidence 5789999999887778999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHH-HhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEE-EeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVL-KEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~-~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++. .|+..+++.++++++.+..+.... .. . .+...++. |+|+|||++|+||
T Consensus 101 ~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~~~~~~~~~~---~~-~-~~~~~~~~~~~P~GVv~~I~Pw 171 (497)
T 3i44_A 101 RSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYKEFSFQE---AL-I-EGNEQAILHYDAIGVVGLITPW 171 (497)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHHHHCCSEE---ES-S-TTCSSCEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cc-c-CCceeEEEeecCceEEEEECCC
Confidence 999999999999999999999 799999999999999887765442 11 1 23446777 9999999999999
No 29
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=99.96 E-value=3.5e-28 Score=202.78 Aligned_cols=145 Identities=23% Similarity=0.373 Sum_probs=131.0
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
+.+.||||+|+. ++.+++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|+
T Consensus 23 ~~~~~i~g~~~~--~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 95 (500)
T 2j6l_A 23 ENEGVYNGSWGG--RGEVITTYCPANNEPIARVRQASVADYEETVKKAREAWK-----IWADIPAPKRGEIVRQIGDALR 95 (500)
T ss_dssp EEECEESSSEEC--CSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCceECCEEec--CCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHH
Confidence 357899999994 567899999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+....+...++.|+|+|||++|+||
T Consensus 96 ~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~~~~~~~~~~~~P~GVv~~I~Pw 167 (500)
T 2j6l_A 96 EKIQVLGSLVSLEMGKILVEGVGEVQEYVDICDYAVGLSRMIGGPI---LPSERSGHALIEQWNPVGLVGIITAF 167 (500)
T ss_dssp HTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCBE---ECCSSTTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccccCCCceeEEEEecccEEEEECCC
Confidence 9999999999999999999998899999999999999988876653 22222344568899999999999999
No 30
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=99.96 E-value=2.5e-28 Score=202.96 Aligned_cols=139 Identities=29% Similarity=0.524 Sum_probs=123.0
Q ss_pred ceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhH
Q 031230 12 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERK 91 (163)
Q Consensus 12 ~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~ 91 (163)
+||||+|+.+ +. ++++||+||+++++++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|++|+
T Consensus 2 ~~I~G~~~~~--~~-~~~~nP~tg~~i~~~~~~~~~~v~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~ 73 (486)
T 3pqa_A 2 MFIDGKWINR--ED-MDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKE-----VMKNLPITKRYNILMNIAKQIKEKK 73 (486)
T ss_dssp -------CCC--CC-EEEECTTTCCEEEEECCCCHHHHHHHHHHHHHTHH-----HHHTCCHHHHHHHHHHHHHHHHHTH
T ss_pred eeECCEEecC--CC-eEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999875 45 99999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 92 SELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 92 ~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
++|+.+++.|+|||..++..|+..+++.++|+++++.++.+.. .+. .+...++.|+|+|||++|+||
T Consensus 74 ~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~~~P~GVv~~I~Pw 140 (486)
T 3pqa_A 74 EELAKILAIDAGKPIKQARVEVERSIGTFKLAAFYVKEHRDEV---IPS--DDRLIFTRREPVGIVGAITPF 140 (486)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE---ECC--TTEEEEEEEEECSEEEEEECS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCce---ecC--CCceeEEEEccccEEEEECCC
Confidence 9999999999999999999999999999999999999987763 222 256789999999999999999
No 31
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=99.96 E-value=2.6e-28 Score=202.61 Aligned_cols=142 Identities=30% Similarity=0.473 Sum_probs=132.5
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
..++||||+|+.+.++.+++++||+||+++++++.++.+|++.+++.|++||+ .|+.++..+|.++|.+++++|+
T Consensus 7 ~~~~~i~G~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 81 (478)
T 3ty7_A 7 YTKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYL-----EFRHTSVKERQALLDKIVKEYE 81 (478)
T ss_dssp CCEEEETTEEEECSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHTSCHHHHHHHHHHHHHHHH
T ss_pred hhhheECCEEecCCCCCeEEeECCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHH
Confidence 35789999999887788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHH-HHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a-~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++ ..|+..+++.++|+++.+.++.+.. .+...++.|+|+|||++|+||
T Consensus 82 ~~~~~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~P~GVv~~I~Pw 149 (478)
T 3ty7_A 82 NRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEFEE--------RRGDDLVVKEAIGVSGLITPW 149 (478)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHHHHCCSEE--------EETTEEEEEEECCCEEEECCS
T ss_pred HhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHhhccc--------CCccceEEecCceEEEEECCC
Confidence 999999999999999999999 6799999999999999998887653 123578999999999999999
No 32
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=99.96 E-value=6.1e-28 Score=202.03 Aligned_cols=145 Identities=30% Similarity=0.472 Sum_probs=131.4
Q ss_pred ccceeCceEecCCCCCeeeeecCC-CCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPT-TEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~-tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
+++||+|+|+.+ +.+++++||+ ||+++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|+
T Consensus 38 ~~~~i~G~~~~~--~~~~~~~nP~~t~~~i~~~~~~~~~~v~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~ 110 (516)
T 1uzb_A 38 YPLYIGGEWVDT--KERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFK-----TWKDWPQEDRSRLLLKAAALMR 110 (516)
T ss_dssp ECEEETTEEECC--SSEEEEEETTEEEEEEEEEECCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHH
T ss_pred cceeECCEEecC--CCeEEEECCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHH
Confidence 468999999963 5789999999 6999999999999999999999999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+|+++|+.+++.|+|||..++..|+..+++.++||++++.++.+... +. ....+...++.|+|+|||++|+||
T Consensus 111 ~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~~~~~~P~GVv~~I~Pw 183 (516)
T 1uzb_A 111 RRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAV-EV-VPYPGEDNESFYVPLGAGVVIAPW 183 (516)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHGGGCSSCC-CC-CCCTTEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cc-cCCCCceEEEEEeccceEEEECCC
Confidence 99999999999999999999999999999999999999999887631 11 112355679999999999999999
No 33
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=99.96 E-value=5.7e-28 Score=201.48 Aligned_cols=147 Identities=39% Similarity=0.699 Sum_probs=131.8
Q ss_pred cceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 031230 11 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITER 90 (163)
Q Consensus 11 ~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~ 90 (163)
++||||+|+.+.++.+++++||+||+++++++.++.+|++.|++.|++||..+ | .|+.++..+|.++|.+++++|++|
T Consensus 21 ~~~i~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~-~-~w~~~~~~~R~~~L~~~a~~l~~~ 98 (500)
T 1o04_A 21 QIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLG-S-PWRRMDASHRGRLLNRLADLIERD 98 (500)
T ss_dssp SEEETTEEECCTTCCEEEEEETTTTEEEEEEECBCHHHHHHHHHHHHHHTSTT-S-HHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CeeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhcc-c-ccccCCHHHHHHHHHHHHHHHHHH
Confidence 67999999987667889999999999999999999999999999999999710 0 399999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHH-HhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 91 KSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 91 ~~~la~~~~~e~Gkp~~~a~-~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+++|+.+++.|+|||..++. .|+..+++.++||+++++++.++. .+.. .+...++.|+|+|||++|+||
T Consensus 99 ~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~~~~g~~---~~~~-~~~~~~~~~~P~GVv~~I~Pw 168 (500)
T 1o04_A 99 RTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKT---IPID-GDFFSYTRHEPVGVCGQIIPW 168 (500)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTTCCEEE---ECCS-SSEEEEEEEEECCEEEEECCS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc---eecC-CCceEEEEEecCCcEEEECCC
Confidence 99999999999999999885 599999999999999999988763 2222 355679999999999999999
No 34
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=99.96 E-value=5.1e-28 Score=201.39 Aligned_cols=143 Identities=24% Similarity=0.388 Sum_probs=130.5
Q ss_pred cceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 031230 11 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITER 90 (163)
Q Consensus 11 ~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~ 90 (163)
++||||+|+.+. +..++++||+||+++++++.++.++++.+++.|++||. .|+.++..+|.++|.+++++|++|
T Consensus 7 ~~~I~G~~~~~~-~~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~ 80 (490)
T 3ju8_A 7 THYIAGQWLAGQ-GETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFP-----AWARRPLEQRIELLERFAATLKSR 80 (490)
T ss_dssp CEEETTEEECCC-SCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CceECCEEecCC-CCeEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHHH
Confidence 789999999863 56789999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 91 KSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 91 ~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+++|+.+++.|+|||..++..|+..+++.++|++....++.+... + ...+...++.|+|+|||++|+||
T Consensus 81 ~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~P~GVv~~I~Pw 149 (490)
T 3ju8_A 81 ADELARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGEKS---G-PLADATAVLRHKPHGVVAVFGPY 149 (490)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE---E-EETTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---c-cCCCCeeeEEECCCCEEEEECCC
Confidence 999999999999999999999999999999999999888877631 1 11345567889999999999999
No 35
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=99.95 E-value=3.3e-27 Score=196.92 Aligned_cols=147 Identities=21% Similarity=0.318 Sum_probs=130.3
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
+++||||+|+.+. .+++++||+||+++++++.++.+|++.|+++|++||.. .|+.++..+|.++|.+++++|++
T Consensus 19 ~~~~i~g~~~~~~--~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~----~w~~~~~~~R~~~L~~~a~~l~~ 92 (501)
T 1uxt_A 19 YPSYLAGEWGGSG--QEIEVKSPIDLATIAKVISPSREEVERTLDVLFKRGRW----SARDMPGTERLAVLRKAADIIER 92 (501)
T ss_dssp ECEECSSSEECCS--CEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHTHHH----HHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cceeECCEEecCC--CeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhh----hhccCCHHHHHHHHHHHHHHHHH
Confidence 4789999999763 78999999999999999999999999999999999961 39999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCC--CceeEEEEeccceEEEEccC
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME--NFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++|+.+++.|+|||..++..|+..+++.++|++++++++.+.. .+...... +...++.|+|+|||++|+||
T Consensus 93 ~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~P~GVv~~I~Pw 167 (501)
T 1uxt_A 93 NLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELDLKKIGGDY-IPGDWTYDTLETEGLVRREPLGVVAAITPF 167 (501)
T ss_dssp THHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTGGGGGGGTCCEE-EESTTSSTTTTEEEEEEEEECSEEEEECCT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccccccCCCcCceEEEEEeeccEEEEECCC
Confidence 999999999999999999999999999999999999999886653 11111012 33679999999999999999
No 36
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=99.95 E-value=1.4e-26 Score=194.31 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=125.9
Q ss_pred CccceeCceEecCCCCCeeeeecCCCCCeee-EecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTTEEIVG-DIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~-~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
..++||||+|+.+.+ ++||+||++++ +++.++.+|++.|+++|++||. .|+.++..+|.++|.+++++|
T Consensus 29 ~~~~~I~G~~~~~~~-----v~nP~tg~~i~~~~~~~~~~dv~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l 98 (528)
T 3v4c_A 29 KGKHLVAGEWLDGAG-----TFASAPAHGPAHDFAVGTVELVNRACEAAEEAFW-----TYGYSSRKERAAFLRAIADEI 98 (528)
T ss_dssp CCCEEETTEEECCSS-----EEECCCSSSCCCEEECCCHHHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHH
T ss_pred ccCceECCEEecCCC-----ccCCCCCCEeeeEeCCCCHHHHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHH
Confidence 357899999997642 99999999998 9999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhh--hcccccc-ccC--CCCCCceeEEEEeccceEEEEcc
Q 031230 88 TERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEG--LDAKQKA-PVS--LPMENFKSYVLKEPIGVVGLITP 162 (163)
Q Consensus 88 ~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~--~~~~~~~-~~~--~~~~~~~~~~~r~P~GVV~~IsP 162 (163)
++|+++|+.+++.|+|||..++..|+..+++.++||++.+++ +.+.... ..+ .+..+...++.|+|+|||++|+|
T Consensus 99 ~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P 178 (528)
T 3v4c_A 99 EARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGA 178 (528)
T ss_dssp HHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECC
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECC
Confidence 999999999999999999999999999999999999999887 3333110 001 11123457899999999999999
Q ss_pred C
Q 031230 163 W 163 (163)
Q Consensus 163 w 163 (163)
|
T Consensus 179 w 179 (528)
T 3v4c_A 179 S 179 (528)
T ss_dssp S
T ss_pred C
Confidence 9
No 37
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=99.94 E-value=2.1e-26 Score=204.36 Aligned_cols=145 Identities=31% Similarity=0.468 Sum_probs=132.6
Q ss_pred CccceeCceEecCCCCCeeeeecCCC-CCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTT-EEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
..++||||+|+.+ +.+++++||+| ++++++++.++.++++.|+++|++||. .|+.+|..+|+++|.+++++|
T Consensus 531 ~~~~~I~G~~~~~--~~~~~v~nPa~~~~~i~~v~~a~~~dv~~Av~aA~~A~~-----~W~~~~~~eRa~iL~~~Adll 603 (1026)
T 4f9i_A 531 TYPLFINGKEVRT--NDLIPTVNPNKPSEVLGQICQAGTTEVGDAIAAAKAAFP-----AWRDTDPRTRAEYLLKAAQAA 603 (1026)
T ss_dssp EECEEETTEEECC--SCEEEEEETTEEEEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHTSCHHHHHHHHHHHHHHH
T ss_pred ccCceECCEEecC--CCcEEEeCCCCCCceEEEEeCCCHHHHHHHHHHHHHHHH-----hcccCCHHHHHHHHHHHHHHH
Confidence 3578999999863 57899999998 899999999999999999999999999 999999999999999999999
Q ss_pred HHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 88 TERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 88 ~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
++|+++|+.+++.|+|||..++..||..+++.++||+.++.++.+... +....+...++.|+|+|||++|+||
T Consensus 604 ~~~~~eLa~~~~~E~GK~~~ea~~Ev~~aid~lr~~a~~~~~~~~~~~---~~~~~g~~~~~~~~PlGVV~~I~Pw 676 (1026)
T 4f9i_A 604 RKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLEYYAREMIRLGQPQR---VGHAPGELNHYFYEPKGVAAVIAPW 676 (1026)
T ss_dssp HHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTSCEE---ECCCTTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCcc---ccCCCCccceeEeecCceEEEeCCC
Confidence 999999999999999999999999999999999999999998876642 1112466788999999999999999
No 38
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=99.94 E-value=6.1e-26 Score=190.62 Aligned_cols=147 Identities=21% Similarity=0.303 Sum_probs=126.1
Q ss_pred ccceeCceEecCCCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHH-hhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQA-LSRNKGKDWSSASGAFRAKYLRAIAAKIT 88 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a-~~~~~~~~w~~~~~~~R~~~L~~~~~~l~ 88 (163)
.++||||+|+.+.+ .+++++||+||+++++++.++ +|++.|+++|++| |+ .|+.++..+|.++|.+++++|+
T Consensus 8 ~~~~i~G~~~~~~~-~~~~v~nP~tg~~i~~~~~~~-~dv~~Av~aA~~A~~~-----~w~~~~~~~R~~~L~~~a~~l~ 80 (534)
T 2y53_A 8 LKNHVAGQWIAGTG-AGITLTDPVTGVALVRVSSEG-LDLARAFSFAREDGGA-----ALRALTYAQRAARLADIVKLLQ 80 (534)
T ss_dssp CCEEETTEEECCSS-SCEEEECTTTCCEEEEECCTT-CCHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHH
T ss_pred hhhEECCEEecCCC-CeEEEECCCCCCEEEEEeCCH-HHHHHHHHHHHHHhhh-----hhhhCCHHHHHHHHHHHHHHHH
Confidence 47899999997643 579999999999999999998 8999999999999 58 8999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccc----cccCCCCC-CceeEEEEecc-ceEEEEcc
Q 031230 89 ERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQK----APVSLPME-NFKSYVLKEPI-GVVGLITP 162 (163)
Q Consensus 89 ~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~----~~~~~~~~-~~~~~~~r~P~-GVV~~IsP 162 (163)
+|+++|+.+++.|+|||..++..|+..+++.++||+..++++.+... ...+.... ....++.|+|+ |||++|+|
T Consensus 81 ~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~GVv~~I~P 160 (534)
T 2y53_A 81 AKRGDYYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINA 160 (534)
T ss_dssp HTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEECSTTSSEEEEEEEEECSSCEEEECC
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCcccceEEEecCCCEEEEECC
Confidence 99999999999999999999988999999999999998877643210 00111111 23468899997 99999999
Q ss_pred C
Q 031230 163 W 163 (163)
Q Consensus 163 w 163 (163)
|
T Consensus 161 w 161 (534)
T 2y53_A 161 F 161 (534)
T ss_dssp T
T ss_pred C
Confidence 9
No 39
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=99.94 E-value=4.1e-26 Score=192.41 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=128.7
Q ss_pred CccceeCceEecCCCCCeeeeecCCC-CCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 031230 9 SRQLFINGEWREPVLKKRIPIVNPTT-EEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKI 87 (163)
Q Consensus 9 ~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l 87 (163)
.+++||||+|+.+. ..+.++||.| ++++++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|
T Consensus 63 ~~~~~I~G~~~~~~--~~~~~~~P~~~~~~i~~~~~a~~~dv~~Av~aA~~A~~-----~W~~~~~~~R~~iL~~~a~~l 135 (563)
T 4e3x_A 63 AIPCVVGDEEVWTS--DIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARK-----EWDLKPMADRAQVFLKAADML 135 (563)
T ss_dssp ECCEEETTEEECCS--CEEEEEETTEEEEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHH
T ss_pred cCCeEECCEEeecC--CceeeeCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHH
Confidence 46899999999753 4677899998 799999999999999999999999999 999999999999999999999
Q ss_pred HHh-HHHHHHHHHHHcCCCHHHHHHh-HHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 88 TER-KSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 88 ~~~-~~~la~~~~~e~Gkp~~~a~~e-v~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+++ +++|+.+++.|+|||..++..| +..+++.++|++..+.++.+... ...+ .+...++.|.|+|||++|+||
T Consensus 136 ~~~~~~el~~~~~~e~Gk~~~ea~~e~v~~~~~~~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~r~p~GVV~~I~Pw 210 (563)
T 4e3x_A 136 SGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQP--ISVP-PSTNHTVYRGLEGFVAAISPF 210 (563)
T ss_dssp HTTTHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHHHHHHHHHHHHTTCCC--CCCT-TEEEEEECCBCSSEEEEECCS
T ss_pred HhccHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCc--cCCC-CCcceEEEecCceEEEEECCc
Confidence 999 9999999999999999999886 99999999999999999887631 1111 234467778888999999999
No 40
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=99.93 E-value=1.1e-25 Score=187.08 Aligned_cols=129 Identities=28% Similarity=0.427 Sum_probs=120.9
Q ss_pred eeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC
Q 031230 26 RIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP 105 (163)
Q Consensus 26 ~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp 105 (163)
+++++||+||+++++++.++.+|+++|+++|++||+ .|+.++..+|.++|.+++++|++|+++|+.+++.|+|||
T Consensus 5 ~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 79 (484)
T 3ros_A 5 KYQSVNPYTNEAFASYDNPTSKQIDEAINLAHALYK-----KWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKL 79 (484)
T ss_dssp CCEEEETTTTEEEEECCCCCHHHHHHHHHHHHHHHH-----HHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred ccceeCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-----HhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 589999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 106 LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 106 ~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
..++..|+..+++.++|++++++++.+... +.. .+...++.|+|+|||++|+||
T Consensus 80 ~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~~~P~GVV~~I~Pw 133 (484)
T 3ros_A 80 LSESKEEVELCVSICNYYADHGPEMLKPTK---LNS-DLGNAYYLKQSTGVIMACEPW 133 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCEE---ECC-TTSEEEEEEECCCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCee---ccC-CCceeEEEecCCceEEEECCC
Confidence 999999999999999999999999887742 212 456789999999999999999
No 41
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=99.93 E-value=1.5e-25 Score=185.89 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=119.4
Q ss_pred CCCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 031230 22 VLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETID 101 (163)
Q Consensus 22 ~~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e 101 (163)
..+++++++||+||+++++++.++.+|+++||++|++||+ .|+.+|..+|.++|.+++++|++|+++|+++++.|
T Consensus 3 a~~~t~~v~nP~tg~~~~~~~~~~~~~v~~av~~A~~A~~-----~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 77 (474)
T 4h7n_A 3 AMTKTIEVRNPRTGKFDYVIIPPPPRLLAQQCNRARRAQS-----RWQELGVEGRITTLQQWKQAILSRREQLTEALVND 77 (474)
T ss_dssp CCCCCEEEECTTTCSEEEEECCCCHHHHHHHHHHHHHHHH-----HHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCEEeeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cCCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 102 CGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 102 ~Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+||+. ++..|+..+++.+++++.++.++...... ....++...+..++|+|||++|+||
T Consensus 78 ~Gk~~-~~~~ev~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~P~GVv~~I~Pw 136 (474)
T 4h7n_A 78 TGRLS-ITVLEIDSFLASIDRWCGLAPELLQTSAK--NTSIPFIALQQSLVPYPLVGVISPW 136 (474)
T ss_dssp HSCSH-HHHHHHHHHHHHHHHHHHHHHHHHCCEEE--ECSSTTEEEEEEEEECSEEEEEECS
T ss_pred cCCcH-HHHHHHHHHHHHHHHHHhhhhhccccccc--CCCCCCccceEEEEeccEEEEECCC
Confidence 99985 55579999999999999998887665321 2222456678889999999999999
No 42
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=99.93 E-value=2.5e-25 Score=184.02 Aligned_cols=132 Identities=27% Similarity=0.446 Sum_probs=121.8
Q ss_pred CCCeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Q 031230 23 LKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDC 102 (163)
Q Consensus 23 ~~~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~ 102 (163)
+..+++++||+||+++++++.++.++++.++++|++||. .|+.++..+|.++|.+++++|++|+++|+.+++.|+
T Consensus 5 s~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 79 (462)
T 3etf_A 5 TATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFK-----KWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREM 79 (462)
T ss_dssp -CCCSEEECTTTCCEEEECCCCCHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccCccceECCCCCCEEEEecCCCHHHHHHHHHHHHHHHH-----HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 103 GKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 103 Gkp~~~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|||..++..|+..+++.++|+++.++++.+.. +....+...++.|+|+|||++|+||
T Consensus 80 Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~P~GVv~~I~Pw 136 (462)
T 3etf_A 80 GKPIKQARAEVTKSAALCDWYAEHGPAMLNPE----PTLVENQQAVIEYRPLGVILAIMPW 136 (462)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTSCE----ECSSGGGCEEEEEEECSEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcCCc----ccCCCCceeEEEeecCcEEEEECCC
Confidence 99999999999999999999999999887763 1222356789999999999999999
No 43
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=99.92 E-value=1.2e-24 Score=181.83 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=118.5
Q ss_pred CCCCeeeeecCCCCCee-eEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 031230 22 VLKKRIPIVNPTTEEIV-GDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETI 100 (163)
Q Consensus 22 ~~~~~~~v~~P~tg~~~-~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~ 100 (163)
.++.+++++||+||+++ ++++.++.+|++.|+++|++||+ .|+.++..+|.++|.+++++|++|+++|+.+++.
T Consensus 4 ~~~~~~~~~nP~tg~~i~~~~~~~~~~~v~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 78 (510)
T 1ez0_A 4 QTDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVAR-----DFRRLNNSKRASLLRTIASELEARSDDIIARAHL 78 (510)
T ss_dssp -CCCEEEEECTTTSSEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCeEEeECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-----HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35678999999999999 79999999999999999999999 9999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHhHHHHHHHHHHHHHhhhh--hcccccccc--CC--CCCCceeEEEEeccceEEEEccC
Q 031230 101 DCGKPLEEAVWDIDDVAGCFEYYADLAEG--LDAKQKAPV--SL--PMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 101 e~Gkp~~~a~~ev~~~i~~l~~~a~~~~~--~~~~~~~~~--~~--~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+|||..++..|+..+++.++||++++++ +.+.. ... +. +......++.|+|+|||++|+||
T Consensus 79 e~Gk~~~~a~~Ev~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~Pw 146 (510)
T 1ez0_A 79 ETALPEVRLTGEIARTANQLRLFADVVNSGSYHQAI-LDTPNPTRAPLPKPDIRRQQIALGPVAVFGAS 146 (510)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEE-EECCBTTCSSSCBCCEEEEEEECSCEEEECCS
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHhCcccccc-ccccccccCCCCCCCceEEEecCcEEEEECCc
Confidence 99999999988999999999999999886 55432 100 11 11112468999999999999999
No 44
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=99.92 E-value=1.9e-24 Score=178.54 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=105.4
Q ss_pred CeeeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 031230 25 KRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGK 104 (163)
Q Consensus 25 ~~~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gk 104 (163)
..+++.||.||+++++++.++.+|++.++++|++||. .|+.++..+|.++|.+++++|++|+++|+.+++.|+||
T Consensus 6 ~~~~~~~~~~~~~i~~v~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 80 (457)
T 3lns_A 6 HHHHHSSGHIDDDDKHMNYLSPAKIDSLFSAQKAYFA-----TRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGK 80 (457)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHH-----TTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCC
T ss_pred ccccccCCCCCCeeeecCCCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CHHHHH-HhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 105 PLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 105 p~~~a~-~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|..++. .|+..+++.++|+++.+.++.+....+.+....+...++.|+|+|||++|+||
T Consensus 81 ~~~ea~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~Pw 140 (457)
T 3lns_A 81 PKDVVDLAEIGAVLHEIDFALAHLDEWVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPF 140 (457)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHHHHTSCEEECCCGGGCSCEEEEEEEECCEEEEECCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCcceEEEeecceEEEEECCC
Confidence 999998 49999999999999999988765322222222356789999999999999999
No 45
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=99.88 E-value=2.7e-23 Score=171.82 Aligned_cols=131 Identities=16% Similarity=0.107 Sum_probs=96.7
Q ss_pred eeeecCCCCCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc----
Q 031230 27 IPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDC---- 102 (163)
Q Consensus 27 ~~v~~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~---- 102 (163)
--++||+||+++++++.++.+|+++|+++|++||+ .|+.++..+|.++|.+++++|++|+++|+.+++.|+
T Consensus 9 ~~~~~P~tg~~~~~~~~~~~~~v~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~ 83 (463)
T 2h5g_A 9 SGVDLGTENLYFQSMVKPAGPTVEQQGEMARSGGR-----MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE 83 (463)
T ss_dssp --------------------CCHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CCCcCCCCCCEEEEecCCCHHHHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc
Confidence 34789999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ---CCCHH----HHHHhHHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 103 ---GKPLE----EAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 103 ---Gkp~~----~a~~ev~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|||+. ++..||..+++.++|+++++.++.+... +......+...++.|+|+|||++|+||
T Consensus 84 ~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~-~~~~~~~~~~~~~~~~P~GVv~~I~p~ 150 (463)
T 2h5g_A 84 GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVL-RRTRIAKNLELEQVTVPIGVLLVIFES 150 (463)
T ss_dssp TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEE-EEEEEETTEEEEEEEEECCEEEEEESS
T ss_pred ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCccc-ccccCCCCceeEEEEEcCceEEEEecC
Confidence 79997 4678999999999999999888877631 111101345678999999999999955
No 46
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=99.83 E-value=4.9e-20 Score=152.61 Aligned_cols=115 Identities=25% Similarity=0.274 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HhHHHHHHHHHH
Q 031230 44 ATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAV-WDIDDVAGCFEY 122 (163)
Q Consensus 44 ~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~-~ev~~~i~~l~~ 122 (163)
.+.+|++.|+++|++||+ .|+.++..+|.++|.+++++|++|+++|+.+++.|+|||..++. .|+..+++.+++
T Consensus 15 ~s~~dv~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~ 89 (469)
T 3sza_A 15 SHMSKISEAVKRARAAFS-----SGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEEIEY 89 (469)
T ss_dssp ---CHHHHHHHHHHHHHH-----TTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999 99999999999999999999999999999999999999999997 499999999999
Q ss_pred HHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 123 YADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+++++.++.............+...++.|+|+|||++|+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~Pw 130 (469)
T 3sza_A 90 MIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTW 130 (469)
T ss_dssp HHHHHHHHHSCEECCCCGGGTTSEEEEEEEECSEEEEECCS
T ss_pred HHHHHHhhhcccccCccccCCCccceeeccCCCEEEEECCC
Confidence 99988877654322111112345689999999999999999
No 47
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=99.81 E-value=3e-19 Score=158.42 Aligned_cols=118 Identities=26% Similarity=0.401 Sum_probs=106.5
Q ss_pred eEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHH
Q 031230 39 GDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAG 118 (163)
Q Consensus 39 ~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~ 118 (163)
..++.++.++++.|++.|++||. .|+.+|..+|.++|.+++++|++|+++|+.+++.|+|||..++..||..+++
T Consensus 542 ~pv~~a~~~dv~~Av~aA~~A~~-----~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~~ea~~Ev~~ai~ 616 (1001)
T 3haz_A 542 KPIADATPDQAHAAVAAARAGFA-----GWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAAD 616 (1001)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHH-----HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-----HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 34899999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 119 CFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 119 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
.++||+..++++.+... ..+.. .+...++.++|+|||++|+||
T Consensus 617 ~lr~~a~~a~~~~g~~~-~~~~~-~g~~~~~~~~P~GVV~~I~Pw 659 (1001)
T 3haz_A 617 FCRYYAAQGRKLFGSET-AMPGP-TGESNALTMRGRGVFVAISPW 659 (1001)
T ss_dssp HHHHHHHHHHHHHSSCE-ECCCC-TTEEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHhhcCccc-cccCC-CCCceEEEEeCCcEEEEEcCC
Confidence 99999999988776421 12222 456789999999999999999
No 48
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=99.72 E-value=3.7e-17 Score=134.81 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred ecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH-hHHHHHHH
Q 031230 41 IPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGC 119 (163)
Q Consensus 41 ~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~~-ev~~~i~~ 119 (163)
++.++.++++.+++.|++||+ .|+.++.++|.++|.+++++|++|+++|+++++.|+|||..++.. ++..+++.
T Consensus 1 ~~~a~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~~e~~~~~~~~a~~~ 75 (452)
T 3my7_A 1 MPVTNMAELDAMIARVKKAQE-----EFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVEDKVIKNHFASEF 75 (452)
T ss_dssp -CCSSHHHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 356889999999999999999 999999999999999999999999999999999999999999986 77777777
Q ss_pred H-HHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 120 F-EYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 120 l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+ ++++.. +..+. .+.. .+...++.++|+|||++|+||
T Consensus 76 ~~~~~~~~--~~~g~----~~~~-~~~~~~~~~~P~GVv~~I~P~ 113 (452)
T 3my7_A 76 IYNKYKDE--QTCGI----LEED-DNLGTMTIAEPVGIICGIVPT 113 (452)
T ss_dssp HHHHHTTC--CCSEE----C--------CEEEEEECCEEEEEECT
T ss_pred HHHHhhhc--ccccc----ccCC-CCCceEEEecCceEEEEEcCC
Confidence 7 444331 12221 1111 244568999999999999999
No 49
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=99.72 E-value=1.4e-17 Score=136.44 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH----HHHH--------Hh
Q 031230 45 TAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPL----EEAV--------WD 112 (163)
Q Consensus 45 ~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~----~~a~--------~e 112 (163)
..+++++++++|++||. .|+.+|..+|.++|.+++++|++|+++|+.+++.|+|||. .++. .|
T Consensus 12 ~~~~~~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~e 86 (427)
T 1o20_A 12 HMDELLEKAKKVREAWD-----VLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKR 86 (427)
T ss_dssp --CHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHH
T ss_pred hhHHHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHH
Confidence 35689999999999999 9999999999999999999999999999999999999986 4553 58
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 113 IDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 113 v~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
|..+++.+++|+++.+. .+.. .+......+...++.|+|+|||++|+||
T Consensus 87 v~~~~~~l~~~a~~~~~-~g~~-~~~~~~~~~~~~~~~~~P~GVV~~I~p~ 135 (427)
T 1o20_A 87 IDEMIKACETVIGLKDP-VGEV-IDSWVREDGLRIARVRVPIGPIGIIYES 135 (427)
T ss_dssp HHHHHHHHHHHHHSCCC-TTCE-EEEEECTTSCEEEEEEEECCCEEEECCS
T ss_pred HHHHHHHHHHHHhcccc-cCcc-ccccccCCCceeEEEeecceeEEEEecC
Confidence 99999999999998765 3331 0111001245578999999999999998
No 50
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=99.70 E-value=5.2e-17 Score=133.67 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH----HHH--------HhH
Q 031230 46 AEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLE----EAV--------WDI 113 (163)
Q Consensus 46 ~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~----~a~--------~ev 113 (163)
.++++.|++.|++||+ .|+.++..+|.++|.+++++|++|+++|+.+++.|+||+.. ++. .|+
T Consensus 25 ~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v 99 (444)
T 4ghk_A 25 DQYMTDVGRRARRASR-----SIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKAL 99 (444)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHH
T ss_pred HHHHHHHHHHHHHHHH-----HhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHH
Confidence 5799999999999999 99999999999999999999999999999999999999853 444 378
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 114 DDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 114 ~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
..+++.+++++.+.+.. +.. .+......+...++.|+|+|||++|+||
T Consensus 100 ~~~~~~l~~~a~~~~~~-g~~-~~~~~~~~~~~~~~~~~P~GVV~~I~p~ 147 (444)
T 4ghk_A 100 KTMVEGLRQVATLPDPI-GEM-SNLKYRPSGIQVGQMRVPLGVIGIIYES 147 (444)
T ss_dssp HHHHHHHHHHHHSCCCT-TCE-EEEEECTTSCEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHHHHHhhcccc-Ccc-CCcccCCCCccceEEEeccEEEEEEeCC
Confidence 99999999999887543 321 1111111356789999999999999999
No 51
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=99.70 E-value=1.4e-17 Score=137.79 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH----HHHH-HhHHH-HHHHHH
Q 031230 48 DVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPL----EEAV-WDIDD-VAGCFE 121 (163)
Q Consensus 48 ~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~----~~a~-~ev~~-~i~~l~ 121 (163)
.+++|+++|++||+ .|+.++..+|.++|.+++++|++|+++|+.+++.|+|||. .++. .|+.. +++.++
T Consensus 15 ~~~~av~aA~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~ 89 (468)
T 1vlu_A 15 SSQQIAKNARKAGN-----ILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFE 89 (468)
T ss_dssp HHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHH
T ss_pred hHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHH
Confidence 57899999999999 9999999999999999999999999999999999999998 8885 79999 999999
Q ss_pred HHHHhhhhhcccccc---ccCCC-C-CCceeEEEEeccceEEEEccC
Q 031230 122 YYADLAEGLDAKQKA---PVSLP-M-ENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 122 ~~a~~~~~~~~~~~~---~~~~~-~-~~~~~~~~r~P~GVV~~IsPw 163 (163)
|+++.++++...... ..+.. . .+...++.|+|+|||++|+||
T Consensus 90 ~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pw 136 (468)
T 1vlu_A 90 VMLQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFES 136 (468)
T ss_dssp HHHHHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESS
T ss_pred HHHHHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEecc
Confidence 999999887632110 01110 0 245678999999999999999
No 52
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=99.69 E-value=6.5e-17 Score=133.72 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=91.6
Q ss_pred eEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH-hHHHHH
Q 031230 39 GDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVA 117 (163)
Q Consensus 39 ~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~~-ev~~~i 117 (163)
..++.++.++++.+++.|++||+ .|+.++.++|.++|.+++++|++|+++|+.+++.|+|||..++.. +...++
T Consensus 4 ~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~~~~~~~ 78 (464)
T 3k9d_A 4 EDKDLRSIQEVRNLIESANKAQK-----ELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQDKVIKNVFAS 78 (464)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34566788999999999999999 999999999999999999999999999999999999999988764 555566
Q ss_pred HHHHHHHHhhhhhccccccccCCCCCCceeEEEEeccceEEEEccC
Q 031230 118 GCFEYYADLAEGLDAKQKAPVSLPMENFKSYVLKEPIGVVGLITPW 163 (163)
Q Consensus 118 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~IsPw 163 (163)
+.+.++++..+ ..+. ... ..+...++.++|+|||++|+||
T Consensus 79 ~~~~~~~~~~~-~~g~----~~~-~~~~~~~~~~~P~GVv~~I~P~ 118 (464)
T 3k9d_A 79 KHVYNYIKDMK-TIGM----LKE-DNEKKVMEVAVPLGVVAGLIPS 118 (464)
T ss_dssp HHHHHHHTTCC-CSEE----EEE-ETTTTEEEEEEECCEEEEEECS
T ss_pred HHHHHhhhccc-ccce----ecc-CCCceeEEEEecceEEEEECCC
Confidence 65554444321 1111 111 1356688999999999999999
No 53
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=76.49 E-value=3.7 Score=22.27 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 031230 76 RAKYLRAIAAKITERKSELANLETIDCGK 104 (163)
Q Consensus 76 R~~~L~~~~~~l~~~~~~la~~~~~e~Gk 104 (163)
..++|.-++..|.+-+++|+.++..|..+
T Consensus 13 KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 13 KQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999998887654
No 54
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=61.63 E-value=9.3 Score=21.93 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELAN 96 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~ 96 (163)
.++.... .|+.++..+|..+...+.+.-+++..++..
T Consensus 29 i~k~lg~-----~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~ 65 (67)
T 3fgh_A 29 KLKTVKE-----NWKNLSDSEKELYIQHAKEDETRYHNEMKS 65 (67)
T ss_dssp HHHHHHH-----HHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666 799999999999999888888888777754
No 55
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=57.62 E-value=27 Score=21.30 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++..+|.+..++..-++...+.+.......
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 1mul_A 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999998888777777777776665543
No 56
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=56.30 E-value=27 Score=21.26 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++..+|.+..++..-++...+.+.......
T Consensus 2 tk~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 1b8z_A 2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKG 39 (90)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999998888777777777776665543
No 57
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=54.79 E-value=30 Score=21.34 Aligned_cols=38 Identities=11% Similarity=-0.044 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++..+|.+..++..-|+...+.+.......
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (94)
T 1p71_A 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSG 39 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999998888777777777776665543
No 58
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=52.75 E-value=32 Score=21.02 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++..+|.+..++..-|+...+.+.......
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 2o97_B 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG 39 (90)
T ss_dssp BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 46789999999999988888777777777776665543
No 59
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=52.61 E-value=27 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLET 99 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~ 99 (163)
.++..-. .|+.++..++..+...+...-+++..++.....
T Consensus 37 isK~lge-----~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 76 (101)
T 1v63_A 37 RMVEIGS-----RWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVK 76 (101)
T ss_dssp HHHHHHH-----HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 799999999999999999988898888886544
No 60
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=52.12 E-value=34 Score=21.33 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++..+|.+..++..-|+...+.+.......
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~g 39 (99)
T 3c4i_A 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKG 39 (99)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999988888777777777776665543
No 61
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.24 E-value=24 Score=21.33 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELAN 96 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~ 96 (163)
.++..-. .|+.++.++|..+...+....+++..++..
T Consensus 48 isk~lg~-----~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 48 FSKKCSE-----RWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp HHHHHHH-----HHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566 799999999999999988888888877754
No 62
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=50.17 E-value=38 Score=21.06 Aligned_cols=38 Identities=11% Similarity=-0.057 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|+..++..+|.+..++..-|+...+.+.......
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L~~G 41 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENG 41 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999998888777777777776665543
No 63
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=48.80 E-value=27 Score=21.52 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|+..++..+|.+..++..-|+...+.+.......
T Consensus 5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g 42 (93)
T 3rhi_A 5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAG 42 (93)
T ss_dssp --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 35688899999999998888777777777776655543
No 64
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=47.69 E-value=13 Score=26.83 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITE 89 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~ 89 (163)
.|+..+.++|.++...|.++|..
T Consensus 85 ~wr~at~~Qr~~F~~~F~~~L~~ 107 (211)
T 2qgu_A 85 FWSQATPEQQQQIQDGFKSLLIR 107 (211)
T ss_dssp GTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hHhhCCHHHHHHHHHHHHHHHHH
Confidence 79999999999988888887765
No 65
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=47.51 E-value=71 Score=22.84 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhh
Q 031230 69 SSASGAFRAKYLRAIAAKITER----------KSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAE 128 (163)
Q Consensus 69 ~~~~~~~R~~~L~~~~~~l~~~----------~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~ 128 (163)
..++...=..++..+.+.+.+- +.+|++.++..+|.+..++..-|+...+.+........
T Consensus 17 ~~l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~~i~~~L~~G~ 86 (204)
T 2iie_A 17 SHIPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGE 86 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445454445555555555432 67899999999999998888777777777776665443
No 66
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=46.02 E-value=49 Score=20.24 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHH-cCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLETID-CGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~~e-~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++.. +|.+..++..-|+...+.+.......
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L~~g 40 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQG 40 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 467899999988 69988888777777777776665543
No 67
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=44.25 E-value=25 Score=20.76 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.|..++.++|..+...+...-+.+..++
T Consensus 40 ~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 67 (80)
T 1gt0_D 40 EWKLLSETEKRPFIDEAKRLRALHMKEH 67 (80)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999999888887777766554
No 68
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=42.78 E-value=28 Score=21.31 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.9
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANL 97 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~ 97 (163)
.++..-. .|+.++.++|..+...+...-+++..++...
T Consensus 38 isk~lg~-----~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 75 (92)
T 2crj_A 38 ITKMLGA-----EWSKLQPAEKQRYLDEAEKEKQQYLKELWAY 75 (92)
T ss_dssp HHHHHHH-----HHHTCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 7999999999999999888888888777653
No 69
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=41.61 E-value=24 Score=20.62 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSE 93 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 93 (163)
.|+.++.++|..+...+...-+++..+
T Consensus 42 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 68 (76)
T 1hry_A 42 QWKMLTEAEKWPFFQEAQKLQAMHREK 68 (76)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999988887777666554
No 70
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.87 E-value=64 Score=20.07 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSELANLETID 101 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e 101 (163)
.|+.++.++|..+...+...-+++..++...-...
T Consensus 55 ~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 89 (102)
T 2co9_A 55 MWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASL 89 (102)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 69999999999999999988888888877655443
No 71
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=40.26 E-value=74 Score=20.63 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHhHHHHHHHH
Q 031230 68 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCF 120 (163)
Q Consensus 68 w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l 120 (163)
=+..+..+|++-+-..+..+.....+|...-+...|+. +...++..+|+.+
T Consensus 50 DS~~Tr~e~RerIv~eCnavRqaLQdLlseym~~~g~k--e~se~L~~aI~km 100 (111)
T 4ehp_B 50 DSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRK--ERSDALNSAIDKM 100 (111)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCC--CCCCHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchhHHHHHHHH
Confidence 36667778888888888888888888888888888872 2223555555544
No 72
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=38.65 E-value=34 Score=21.80 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLET 99 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~~ 99 (163)
.++..-. .|+.++..++..+...+...-+++..++.....
T Consensus 44 isk~lg~-----~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 44 RMVLCSQ-----QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp HHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666 799999999999999999988888888876543
No 73
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=38.33 E-value=35 Score=20.47 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.|..++.++|..+...+...-+++..++
T Consensus 42 ~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 69 (85)
T 1j46_A 42 QWKMLTEAEKWPFFQEAQKLQAMHREKY 69 (85)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6999999999998888877777766553
No 74
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=37.94 E-value=51 Score=21.93 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCC---HHHHHHHHHHHHHHHHHhHHHH
Q 031230 44 ATAEDVELAVDAARQALSRNKGKDWSSAS---GAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 44 ~~~~~i~~av~~a~~a~~~~~~~~w~~~~---~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.+.+|++++|..+.+-.. .+ .++ ...|.+++..+...|.+-+++|
T Consensus 81 ~dLeDLe~sI~ivE~np~-----kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 81 WDLEDLEETIGIVEANPG-----KF-KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHCHH-----HH-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHH-----hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577777776654433 22 344 6778888888888877766654
No 75
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=36.55 E-value=40 Score=20.21 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.|..++.++|..+...+...-+.+..++
T Consensus 40 ~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 67 (86)
T 2lef_A 40 RWHALSREEQAKYYELARKERQLHMQLY 67 (86)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 6999999999988888777777665554
No 76
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.91 E-value=12 Score=23.13 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=29.1
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLE 98 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~ 98 (163)
.++..-. .|+.++.++|..+...+...-+++..++...-
T Consensus 38 isk~lg~-----~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~ 76 (92)
T 2cs1_A 38 ATLQIEE-----LWKTLSEEEKLKYEEKATKDLERYNSQMKRAI 76 (92)
T ss_dssp HHHHHHH-----HHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHT
T ss_pred HHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 79999999999998888877777777766543
No 77
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=35.39 E-value=25 Score=20.69 Aligned_cols=28 Identities=4% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.|..++.++|..+...+...-+++..++
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 67 (79)
T 3u2b_C 40 RWKLLKDSDKIPFIQEAERLRLKHMADY 67 (79)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6999999999999888877777665543
No 78
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=34.99 E-value=41 Score=21.24 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=26.3
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.++..-. .|+.++.++|..+...+...-+++..++
T Consensus 60 isk~lg~-----~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 94 (106)
T 4euw_A 60 LSKTLGK-----LWRLLNESEKRPFVEEAERLRVQHKKDH 94 (106)
T ss_dssp HHHHHHH-----HHTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555 7999999999999888777776666553
No 79
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=34.60 E-value=38 Score=21.12 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHHHhhh
Q 031230 91 KSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAE 128 (163)
Q Consensus 91 ~~~la~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~~~ 128 (163)
+.+|+..++..+|.+..++..-|+...+.+........
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~G~ 40 (99)
T 1exe_A 3 KTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGD 40 (99)
T ss_dssp TTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 46788888889999888887777777777766655443
No 80
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=34.40 E-value=21 Score=20.91 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 031230 56 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELA 95 (163)
Q Consensus 56 a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la 95 (163)
++..-. .|+.++.++|..+...+...-.++..++.
T Consensus 38 sk~lg~-----~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 72 (77)
T 1hme_A 38 AKKLGE-----MWNNTAADDKQPYEKKAAKLKEKYEKDIA 72 (77)
T ss_dssp HHHHHH-----HHHHSCGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 79999999999999888888877776653
No 81
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=33.48 E-value=24 Score=20.25 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.++..-. .|+.++.++|..+...+...-+++..++
T Consensus 34 isk~lg~-----~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 68 (71)
T 1ckt_A 34 FSKKCSE-----RWKTMSAKEKGKFEDMAKADKARYEREM 68 (71)
T ss_dssp HHHHHHH-----HHHTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 7999999999999888887777776665
No 82
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=33.12 E-value=32 Score=15.98 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHH
Q 031230 69 SSASGAFRAKYLRAIA 84 (163)
Q Consensus 69 ~~~~~~~R~~~L~~~~ 84 (163)
+..+..+|-+||.++.
T Consensus 4 s~~sL~EkHkILHrLL 19 (26)
T 3bej_E 4 SHSSLTERHKILHRLL 19 (26)
T ss_pred chhhHHHHHHHHHHHH
Confidence 4567888888888764
No 83
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=32.81 E-value=80 Score=19.93 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=28.4
Q ss_pred hHHHHHHHHH-----HHcCCCHHHHHHhHHHHHHHHHHHHHhh
Q 031230 90 RKSELANLET-----IDCGKPLEEAVWDIDDVAGCFEYYADLA 127 (163)
Q Consensus 90 ~~~~la~~~~-----~e~Gkp~~~a~~ev~~~i~~l~~~a~~~ 127 (163)
++.+|++.++ ..+|.+..++..-|+...+.+.......
T Consensus 10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L~~G 52 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSN 52 (108)
T ss_dssp EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 4678888888 7888888888777777777776655543
No 84
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=31.53 E-value=43 Score=25.22 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=22.8
Q ss_pred eeCce-EecCCCCCeeeeecCCCCCeeeEecCCC
Q 031230 13 FINGE-WREPVLKKRIPIVNPTTEEIVGDIPAAT 45 (163)
Q Consensus 13 ~i~g~-~~~~~~~~~~~v~~P~tg~~~~~~~~~~ 45 (163)
|++|+ |+.......+-++||.||+++..+....
T Consensus 188 ~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~ 221 (268)
T 3nok_A 188 CANGVIYANIWHSSDVLEIDPATGTVVGVIDASA 221 (268)
T ss_dssp EETTEEEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred EeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence 44554 2222245678899999999999887654
No 85
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=31.20 E-value=49 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCCeeeeecCCCCCeeeEecCCC
Q 031230 23 LKKRIPIVNPTTEEIVGDIPAAT 45 (163)
Q Consensus 23 ~~~~~~v~~P~tg~~~~~~~~~~ 45 (163)
....+-++||.||+++..+....
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTT
T ss_pred cCCeEEEEECCCCcEEEEEECCc
Confidence 35678899999999999887653
No 86
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=31.11 E-value=30 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
.|..++.++|..+...+...-+++..++
T Consensus 44 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 71 (83)
T 3f27_D 44 SWKALTLAEKRPFVEEAERLRVQHMQDH 71 (83)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6999999999999888877777766553
No 87
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=29.98 E-value=40 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q 031230 56 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELA 95 (163)
Q Consensus 56 a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la 95 (163)
++..-. .|+.++..+|..+...+...-+++..++.
T Consensus 41 sk~lg~-----~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 75 (83)
T 1aab_A 41 SKKCSE-----RWKTMSAKEKGKFEDMAKADKARYEREMK 75 (83)
T ss_dssp HHHHHH-----HHTTSCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 79999999999998888887777766653
No 88
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=29.32 E-value=21 Score=20.45 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSE 93 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 93 (163)
.|+.++.++|..+...+...-+++..+
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 66 (71)
T 4a3n_A 40 SWKALTLAEKRPFVEEAERLRVQHMQD 66 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999888777766665543
No 89
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=28.89 E-value=46 Score=20.01 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSE 93 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 93 (163)
.|+.++.++|..+...+...-+++..+
T Consensus 55 ~Wk~ls~eeK~~y~~~A~~~k~~~~~~ 81 (87)
T 2e6o_A 55 RWKKMKNEERRMYTLEAKALAEEQKRL 81 (87)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999888877776666543
No 90
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=28.30 E-value=52 Score=24.28 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=21.8
Q ss_pred eeCce-EecCCCCCeeeeecCCCCCeeeEecCC
Q 031230 13 FINGE-WREPVLKKRIPIVNPTTEEIVGDIPAA 44 (163)
Q Consensus 13 ~i~g~-~~~~~~~~~~~v~~P~tg~~~~~~~~~ 44 (163)
+++|+ |........+-++||.||++++.+...
T Consensus 157 ~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 157 WVNGELLANVWLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp EETTEEEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred EeCCEEEEEECCCCeEEEEECCCCCEEEEEECC
Confidence 35554 222223557889999999999988754
No 91
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=27.98 E-value=1.1e+02 Score=19.15 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=21.3
Q ss_pred cCCCCCeeeEecCCCHHHHHHHHHHHHHHhh
Q 031230 31 NPTTEEIVGDIPAATAEDVELAVDAARQALS 61 (163)
Q Consensus 31 ~P~tg~~~~~~~~~~~~~i~~av~~a~~a~~ 61 (163)
|+.+++++......+.+--..|++.|.+|..
T Consensus 8 ~~~~~k~~I~~~DM~~emq~~a~~~a~~al~ 38 (97)
T 4ds1_A 8 DENKSTPIVKASDITDKLKEDILTISKDALD 38 (97)
T ss_dssp ----CCCEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cccCCccEEEECCCCHHHHHHHHHHHHHHHH
Confidence 4556667777777788788888888888887
No 92
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=27.51 E-value=73 Score=16.70 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHH
Q 031230 72 SGAFRAKYLRAIAAKITERKSEL 94 (163)
Q Consensus 72 ~~~~R~~~L~~~~~~l~~~~~~l 94 (163)
++.+|.+++.++.+.|....-.|
T Consensus 2 s~~ere~~i~~LreeLR~EEaKL 24 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEEAKL 24 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988887654443
No 93
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=27.05 E-value=57 Score=15.32 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q 031230 67 DWSSASGAFRAKYLRAIAAKITER 90 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~ 90 (163)
+|....+.+| +|.++..+|..|
T Consensus 7 swkckafkqr--vlkrllamlrqh 28 (30)
T 2l3i_A 7 SWKCKAFKQR--VLKRLLAMLRQH 28 (30)
T ss_dssp CSCCCHHHHH--HHHHHHHHHHTC
T ss_pred chhHHHHHHH--HHHHHHHHHHHh
Confidence 7877666655 677887777654
No 94
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=26.02 E-value=43 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLE 98 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~~~ 98 (163)
.++..-. .|+.++.++|..+...+...-+++..++...-
T Consensus 55 isk~lg~-----~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 93 (97)
T 2lhj_A 55 IGKMIGA-----AWNALSDEEKKPYERMSDEDRVRYEREKAEYA 93 (97)
T ss_dssp HHHHHHH-----TSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666 89999999999999888888888888776543
No 95
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=25.01 E-value=91 Score=22.38 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH
Q 031230 80 LRAIAAKITERKSELANLETIDCGKPLEEAV 110 (163)
Q Consensus 80 L~~~~~~l~~~~~~la~~~~~e~Gkp~~~a~ 110 (163)
+..-++.|.+.++.+.++.+..+|+|..+..
T Consensus 148 i~i~a~el~~~~~~i~~iya~~TG~~~e~I~ 178 (205)
T 4gm2_A 148 IEIQNKEIMNTKKKVIEIISKNTEKDTNVIS 178 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5556677888888999999999999986654
No 96
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=24.16 E-value=88 Score=23.54 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=34.0
Q ss_pred ccceeCceEecCCCCCeeeeecCCC-CCeeeEecCCCHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Q 031230 10 RQLFINGEWREPVLKKRIPIVNPTT-EEIVGDIPAATAEDVELAVDAARQALSRNKGKDWSSASGAFRAKYLRAI 83 (163)
Q Consensus 10 ~~~~i~g~~~~~~~~~~~~v~~P~t-g~~~~~~~~~~~~~i~~av~~a~~a~~~~~~~~w~~~~~~~R~~~L~~~ 83 (163)
++.+|+|+|+...+... ...|... -.-+..+.. +.+ ..++.+++-..+ .-..+.-++|..+...+
T Consensus 221 YkFiVDG~w~~d~~~~~-~~~d~~G~~nn~~~v~~-~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 286 (294)
T 3nme_A 221 YKYIIDGEWTHNEAEPF-IGPNKDGHTNNYAKVVD-DPT---SVDGTTRERLSS----EDPELLEEERSKLIQFL 286 (294)
T ss_dssp EEEEETTEEECCTTSCE-ECSCTTSCCEEEEEECC-CCC---TTCTTHHHHHSS----SSCCCCHHHHHHHHHHH
T ss_pred EEEEECCEEeeCCCCCe-eeECCCCCEeEEEEECC-CCc---chhHHHHHHhhc----CCccccHHHHHHHHHHH
Confidence 67889999987533222 1223321 123344443 221 222344444431 55789999998776544
No 97
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=22.80 E-value=35 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSELAN 96 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~la~ 96 (163)
.|+.++.++|..+...+...-++...++..
T Consensus 48 ~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~ 77 (99)
T 1k99_A 48 KYKELPEKKKMKYIQDFQREKQEFERNLAR 77 (99)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999988888887777776666653
No 98
>1hcw_A BBA1; growth response protein, de novo protein design, supersecondary motif; HET: PYA; NMR {} SCOP: k.14.1.1 PDB: 1t8j_A*
Probab=22.72 E-value=33 Score=15.63 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHcCC
Q 031230 90 RKSELANLETIDCGK 104 (163)
Q Consensus 90 ~~~~la~~~~~e~Gk 104 (163)
+.|+|++++....|.
T Consensus 11 rsdelakllrlhag~ 25 (26)
T 1hcw_A 11 RSDELAKLLRLHAGX 25 (26)
T ss_dssp SSHHHHHHHHHCCC-
T ss_pred ccHHHHHHHHHhccC
Confidence 456777777766653
No 99
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.05 E-value=45 Score=19.65 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERK 91 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~ 91 (163)
.|+.++.++|..+...+...-+++.
T Consensus 42 ~Wk~ls~eeK~~y~~~A~~~k~~~~ 66 (81)
T 1i11_A 42 RWKAMTNLEKQPYYEEQARLSKQHL 66 (81)
T ss_dssp HHTTSCSGGGHHHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999888877776655544
No 100
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=21.95 E-value=89 Score=19.38 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Q 031230 55 AARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELAN 96 (163)
Q Consensus 55 ~a~~a~~~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~la~ 96 (163)
.++..-. .|..++..++..+..++...-.+...++..
T Consensus 34 vsK~lGe-----~Wk~ls~~eK~pye~kA~~dK~rYekEm~~ 70 (91)
T 1l8y_A 34 ALKAMEM-----TWNNMEKKEKLMWIKKAAEDQKRYERELSE 70 (91)
T ss_dssp HHHHHHH-----HHHTTGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 788888888888887777777777766654
No 101
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=21.38 E-value=93 Score=20.82 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERKSELAN 96 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~~~la~ 96 (163)
.|..++..++..+...+...-+.+..++..
T Consensus 126 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~ 155 (159)
T 2gzk_A 126 MWNNTAADDKQPYEKKAAKLKEKYEKDIAA 155 (159)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999888888887764
No 102
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.32 E-value=1.4e+02 Score=18.71 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q 031230 67 DWSSASGAFRAKYLRAIAAKITER 90 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~ 90 (163)
..+++|+++|.+.|.+-.+.|...
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~e 30 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRE 30 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHH
Confidence 578999999998887655555543
No 103
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=20.86 E-value=87 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhH
Q 031230 67 DWSSASGAFRAKYLRAIAAKITERK 91 (163)
Q Consensus 67 ~w~~~~~~~R~~~L~~~~~~l~~~~ 91 (163)
.|+.++.++|..+...+...-+++.
T Consensus 45 ~Wk~ls~~eK~~y~~~A~~~k~~y~ 69 (82)
T 1wz6_A 45 WWAVLDPKEKQKYTDMAKEYKDAFM 69 (82)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999988887777666554
No 104
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=20.66 E-value=91 Score=15.34 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 031230 73 GAFRAKYLRAIAAKIT 88 (163)
Q Consensus 73 ~~~R~~~L~~~~~~l~ 88 (163)
..+|-++|.++.|.|+
T Consensus 9 GRe~yEml~ki~d~LE 24 (31)
T 1aie_A 9 GRERFEMFRELNEALE 24 (31)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4678889999998875
Done!