BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031232
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
G ++ C+ +R +E + EVL++SS + + P GG E +E AA+R
Sbjct: 38 GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 87
Query: 96 ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKW 152
E EEAGV G + L+G + + R H T Y++ L+V + L +W + N+ R R+W
Sbjct: 88 EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREW 141
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 35 QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAA 93
++G ++ C+ +R +E++ EVL++SS + + P GG E +E AA
Sbjct: 6 REGFKKRAACLCFR----------SEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAA 55
Query: 94 LRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRK 151
+RE EEAGV G + LLG + + R H T Y++ L V + L +W + N+ R R+
Sbjct: 56 VREVYEEAGVKGKL-GRLLGIFENQDRKHRT----YVYVLTVTEILEDWEDSVNIGRKRE 110
Query: 152 W 152
W
Sbjct: 111 W 111
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
ED +LV SS+ + P GG E +E AA+RE EEAGV G + LLG + +
Sbjct: 15 EDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGVFE---Q 70
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKNV---RSRKW 152
+ +++ Y++ L V + L +W E +V R R+W
Sbjct: 71 NQDPEHRTYVYVLTVTELLEDW-EDSVSIGRKREW 104
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
EVL++ + G +FPKG E ES++EAA+RE EE GV
Sbjct: 15 EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGV 53
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRE 96
G+R+ RY + +++ + +V+ P G E E+ +EA RE
Sbjct: 7 GKREETLTYQTRYAAY---IIVSKPENNTMVLVQAPNGAYFLPGGEIEGTETKEEAIHRE 63
Query: 97 TIEEAGVTGIVECELLGEWN--FKSRAHNTDY--QGYMFPLLVQDQLAEWPEKNVRSRKW 152
+EE G++ + C LGE + F S T Y GY + QL+E P + + W
Sbjct: 64 VLEELGISVEIGC-YLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSE-PLERTNTLHW 121
Query: 153 VC 154
V
Sbjct: 122 VA 123
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 51 CVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110
C+ + L+ ++ + + G FP G E DE+ E+ +RE EE G+T I +
Sbjct: 13 CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT-IQNPQ 71
Query: 111 LLG 113
L+G
Sbjct: 72 LVG 74
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
EVL++ + G +FPKG E ES++EAA+RE E+ GV
Sbjct: 15 EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEQTGV 53
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 60 EEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
+ D VL+ GK + FP G E E+ + A +RE EE GV C L
Sbjct: 17 DPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC--LAPL 74
Query: 116 NFKSRAHNT 124
F S +++T
Sbjct: 75 AFASHSYDT 83
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 65 VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
VLV + G FPKG + DES + A+RE EE G
Sbjct: 112 VLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETG 149
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 65 VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
VLV + G FPKG + DES + A+RE EE G
Sbjct: 117 VLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETG 154
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
+D EVL+I + FPKG E E +E A+RE EE GV G + + +GE ++
Sbjct: 13 KDGEVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEI-LDYIGEIHY 67
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 75 GMLFPKGGWEIDESIQEAALRETIEEAG--VTGIVECELLGEWNFKSRAH 122
G FP G E+ E AA+RE EE G ++G+ C EW R H
Sbjct: 38 GHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTC-EWFDDDRQH 86
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETI 98
+ G I +R +C+ +D N +E L++ + G PKG E E E ALRET
Sbjct: 4 RACGLIIFR-RCLIPKVDNNA--IEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQ 60
Query: 99 EEAGV 103
EEAG+
Sbjct: 61 EEAGI 65
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 58 INEEDLEVLVISSQKGKGMLF--PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
I ++D +LV +G + P G E ESI +A RE +EE G + + E L G +
Sbjct: 15 IEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV-LTGIY 73
Query: 116 NFKSRAHNTDYQGYMF 131
++ ++ T Y + F
Sbjct: 74 HWTCASNGTTYLRFTF 89
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 70 SQKGKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVE-------CELLGEWNFKS-R 120
+ GK + P G E DE+I +A +RE EE + E CE + ++ +S R
Sbjct: 228 AHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVR 287
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKN----VRSRKWV 153
+ G L V DQ PE N + KW+
Sbjct: 288 GRTISHVG----LFVFDQWPSLPEINAADDAKDVKWI 320
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
P G DES++E RE EE G+T +V ++ G+ NF+
Sbjct: 40 LPGGKVNPDESLKEGVAREVWEETGIT-MVPGDIAGQVNFE 79
>pdb|2ZON|G Chain G, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 87
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA 101
+ L+ + KGKG + P+GG DE+ AA+ ++ A
Sbjct: 49 DALLATVLKGKGAMPPRGGTAADEATLRAAVAYMMDAA 86
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 50 KCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
K ++ LD +EV ++ K +PKG E +E+ + AA+RE EE G
Sbjct: 29 KSAQEQLD----SIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 79 PKGGWEIDESIQEAALRETIEEAGVTG 105
P G E DE++ EAA RE EE G++
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISA 60
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETI 98
+ G I +R +C+ +D N +E L++ + G PKG E E E ALR T
Sbjct: 9 RACGLIIFR-RCLIPKVDNNA--IEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQ 65
Query: 99 EEAGV 103
EEAG+
Sbjct: 66 EEAGI 70
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 58 INEEDLEVLVISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGV 103
I +ED +LV Q+ G+ GGW ++D+S+++ ++E EEAG+
Sbjct: 77 IFQEDKILLV---QENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGL 120
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 19/78 (24%)
Query: 30 HLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLV----ISSQKGKGMLFPKGGWEI 85
H YQ + +VGCIP E + +VL+ I+ +GK L P G E
Sbjct: 32 HTIHYQNPK-VIVGCIP-------------EWENKVLLCKRAIAPYRGKWTL-PAGFXEN 76
Query: 86 DESIQEAALRETIEEAGV 103
+E++ + A RET+EEA
Sbjct: 77 NETLVQGAARETLEEANA 94
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 58 INEEDLEVLVISSQ-KGKGM-LFPKGGWEIDESIQEAALRETIEEAGV 103
+E ++LV+ + K K M FP G E +E I + A+RE EE G+
Sbjct: 34 FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81
>pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homology Rna-Binding
Domain
Length = 73
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGC 44
+V + PEN+VG ++ + G+ L YQ ++ GC
Sbjct: 4 VVEIAVPENLVGAILGKGGKTLVEYQ----ELTGC 34
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104
+VL+ +K K L G E++E +EA +RE EEAG+
Sbjct: 18 KVLLHLHKKAKKXLPLGGHIEVNELPEEACIREAKEEAGLN 58
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVT 104
FP+GG ES ++A RE EE G++
Sbjct: 35 FPQGGINPGESAEQAMYRELFEEVGLS 61
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 79 PKGGWEIDESIQEAALRETIEEAGVTG---IVECELLGEWNFKSRAH-------NTDYQG 128
P+GG + E + AA+RE EE GVT I E ++F + +D++G
Sbjct: 43 PQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKG 102
Query: 129 -----YMFPLLVQDQ 138
++F QDQ
Sbjct: 103 QAQKWFLFKFTGQDQ 117
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 81 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 113
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 128
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 78 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 109
FP G + E+ + AALRE EE G G I EC
Sbjct: 82 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 114
>pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|C Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|D Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
Length = 76
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQK 36
+V + PEN+VG ++ + G+ L YQ+
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQE 30
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 60 EEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
++D VL+ +GK + FP G E E+ + + +RE EE GV V+ + L
Sbjct: 38 DQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVH--VQADNLFPL 95
Query: 116 NFKSRAHNT 124
F S + T
Sbjct: 96 TFASHGYET 104
>pdb|1BM8|A Chain A, Dna-Binding Domain Of Mbp1
Length = 99
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 73 GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFP 132
G M K W I +AA +A T I+E E+L E + K + YQG P
Sbjct: 20 GSIMKRKKDDWVNATHILKAA---NFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVP 76
Query: 133 LLVQDQLAE 141
L + QLAE
Sbjct: 77 LNIAKQLAE 85
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
Length = 149
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 78 FPKGGWEIDESIQEAALRETIEE 100
F GG E +E+I E A RE+IEE
Sbjct: 35 FVAGGGEDEEAISETAKRESIEE 57
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 58 INEEDLEVLVISSQKGK---GMLFPKGGWEIDESIQEAALRETIEEAGV 103
++E+D EVL+I K + P G E E+I EA RE EEAG+
Sbjct: 28 LSEQD-EVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75
>pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
pdb|1EC6|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
Length = 87
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 10 IVSLVTPENVVGNLVSRTGRHLQRYQK 36
+V + PEN+VG ++ + G+ L YQ+
Sbjct: 4 LVEIAVPENLVGAILGKGGKTLVEYQE 30
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-------GIV------ECE 110
+VL++ + + P G E ESI E RE EE G+T GI E +
Sbjct: 16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGK 75
Query: 111 LLGEW---NFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN 146
++ EW FK+ T+++G M + +L EW +K+
Sbjct: 76 IVSEWMLFTFKA----TEHEGEMLKQSPEGKL-EWKKKD 109
>pdb|1MB1|A Chain A, Mbp1 From Saccharomyces Cerevisiae
Length = 130
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 73 GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFP 132
G M K W I +AA +A T I+E E+L E + K + YQG P
Sbjct: 23 GSIMKRKKDDWVNATHILKAA---NFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVP 79
Query: 133 LLVQDQLAE 141
L + QLAE
Sbjct: 80 LNIAKQLAE 88
>pdb|1ZX5|A Chain A, The Structure Of A Putative Mannosephosphate Isomerase
From Archaeoglobus Fulgidus
Length = 300
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 25/70 (35%)
Query: 44 CIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
PY ++ + E L VL +SS F + WE + + E E G
Sbjct: 162 TTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAYFFNENDWEKVKKVLNTKKVEEFEVKGK 221
Query: 104 TGIVECELLG 113
G E E G
Sbjct: 222 KGXAETENFG 231
>pdb|1L3G|A Chain A, Nmr Structure Of The Dna-Binding Domain Of Cell Cycle
Protein, Mbp1(2-124) From Saccharomyces Cerevisiae
Length = 136
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 73 GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFP 132
G M K W I +AA +A T I+E E+L E + K + YQG P
Sbjct: 22 GSIMKRKKDDWVNATHILKAA---NFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVP 78
Query: 133 LLVQDQLAE 141
L + QLAE
Sbjct: 79 LNIAKQLAE 87
>pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of
Caenorhabditis Elegans In The Apo-Form
Length = 278
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 21 GNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK----GM 76
G V+ TGRH +R ++ R+Q++ D+ + + ++S+ GK +
Sbjct: 30 GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDI 89
Query: 77 LFPKGGWEIDESIQEAALRETIEE 100
L G I +S + ++IE
Sbjct: 90 LVNNAGAAIPDSQSKTGTAQSIES 113
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 49 YKCVKQSLDINEEDLEVLVISSQKGKGMLFP 79
YKC+ S ++ ++++V+V+++ KG+ +P
Sbjct: 81 YKCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,715,402
Number of Sequences: 62578
Number of extensions: 178936
Number of successful extensions: 428
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 51
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)