Query 031232
Match_columns 163
No_of_seqs 186 out of 1734
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04666 Nudix_Hydrolase_9 Memb 99.9 1.8E-23 3.9E-28 149.4 12.5 112 40-161 1-115 (122)
2 cd03673 Ap6A_hydrolase Diadeno 99.9 2.3E-22 4.9E-27 143.5 11.5 112 39-160 1-115 (131)
3 cd04679 Nudix_Hydrolase_20 Mem 99.9 1.6E-21 3.5E-26 138.9 12.3 110 38-160 1-114 (125)
4 KOG2839 Diadenosine and diphos 99.9 3E-22 6.5E-27 144.3 7.7 120 32-160 1-124 (145)
5 cd04684 Nudix_Hydrolase_25 Con 99.9 7.4E-21 1.6E-25 135.1 12.5 98 63-161 11-117 (128)
6 cd03430 GDPMH GDP-mannose glyc 99.9 8.6E-21 1.9E-25 139.1 12.3 111 37-160 10-131 (144)
7 cd03428 Ap4A_hydrolase_human_l 99.9 4.2E-21 9.1E-26 137.3 10.3 112 39-161 2-115 (130)
8 PRK15434 GDP-mannose mannosyl 99.9 1.3E-20 2.8E-25 140.5 12.2 111 37-160 15-136 (159)
9 COG1051 ADP-ribose pyrophospha 99.8 1.1E-20 2.5E-25 138.8 11.3 110 37-160 8-121 (145)
10 PLN02325 nudix hydrolase 99.8 2.6E-20 5.5E-25 136.7 13.1 113 34-160 4-124 (144)
11 cd04678 Nudix_Hydrolase_19 Mem 99.8 2.5E-20 5.3E-25 133.3 12.5 110 38-160 1-116 (129)
12 cd04672 Nudix_Hydrolase_14 Mem 99.8 3.6E-20 7.9E-25 131.7 13.0 109 38-161 1-112 (123)
13 cd03675 Nudix_Hydrolase_2 Cont 99.8 2.7E-20 5.8E-25 134.0 12.0 107 41-161 2-111 (134)
14 cd04695 Nudix_Hydrolase_36 Mem 99.8 1.5E-20 3.2E-25 135.3 10.4 109 42-161 2-114 (131)
15 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.7E-20 5.8E-25 131.1 11.5 96 63-161 12-108 (120)
16 cd04689 Nudix_Hydrolase_30 Mem 99.8 5.6E-20 1.2E-24 130.9 12.8 105 40-158 2-111 (125)
17 cd04688 Nudix_Hydrolase_29 Mem 99.8 7.8E-20 1.7E-24 130.3 13.4 107 40-160 2-117 (126)
18 cd04677 Nudix_Hydrolase_18 Mem 99.8 1.4E-19 3.1E-24 129.5 13.0 111 38-161 6-122 (132)
19 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.5E-19 3.2E-24 129.4 12.7 109 39-161 1-121 (128)
20 cd04673 Nudix_Hydrolase_15 Mem 99.8 1.3E-19 2.9E-24 127.7 12.3 96 64-161 12-114 (122)
21 cd04700 DR1025_like DR1025 fro 99.8 1.3E-19 2.9E-24 132.4 12.5 110 39-162 13-126 (142)
22 cd04696 Nudix_Hydrolase_37 Mem 99.8 8.9E-20 1.9E-24 130.0 11.3 109 38-160 1-113 (125)
23 cd03674 Nudix_Hydrolase_1 Memb 99.8 1.1E-19 2.3E-24 132.1 11.9 110 39-160 2-122 (138)
24 cd04690 Nudix_Hydrolase_31 Mem 99.8 1.3E-19 2.9E-24 127.4 11.2 94 64-160 13-109 (118)
25 cd03427 MTH1 MutT homolog-1 (M 99.8 2.2E-19 4.9E-24 129.5 12.6 96 63-160 12-110 (137)
26 cd03672 Dcp2p mRNA decapping e 99.8 6.5E-20 1.4E-24 134.7 9.8 107 40-161 2-111 (145)
27 cd04683 Nudix_Hydrolase_24 Mem 99.8 2.8E-19 6.2E-24 126.2 12.0 97 64-162 12-115 (120)
28 cd04670 Nudix_Hydrolase_12 Mem 99.8 2.5E-19 5.5E-24 127.9 11.6 107 39-160 2-112 (127)
29 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.2E-19 2.7E-24 129.8 9.8 110 41-161 3-118 (129)
30 cd04686 Nudix_Hydrolase_27 Mem 99.8 1.9E-19 4.1E-24 129.7 10.8 106 41-160 2-118 (131)
31 cd04676 Nudix_Hydrolase_17 Mem 99.8 6.7E-19 1.4E-23 124.7 13.0 109 39-160 2-116 (129)
32 PRK09438 nudB dihydroneopterin 99.8 8.7E-20 1.9E-24 133.8 8.5 111 38-161 6-129 (148)
33 cd04691 Nudix_Hydrolase_32 Mem 99.8 3.5E-19 7.6E-24 125.9 10.8 92 64-161 12-108 (117)
34 cd04671 Nudix_Hydrolase_13 Mem 99.8 5.2E-19 1.1E-23 126.4 11.6 101 41-159 2-108 (123)
35 cd04681 Nudix_Hydrolase_22 Mem 99.8 5.3E-19 1.2E-23 126.4 11.1 96 63-159 13-113 (130)
36 cd04669 Nudix_Hydrolase_11 Mem 99.8 9.5E-19 2.1E-23 124.4 12.3 101 41-160 2-113 (121)
37 PF00293 NUDIX: NUDIX domain; 99.8 3.7E-19 8.1E-24 126.7 10.1 110 38-160 1-118 (134)
38 cd04682 Nudix_Hydrolase_23 Mem 99.8 3.4E-19 7.4E-24 126.5 9.4 96 63-161 12-114 (122)
39 cd04511 Nudix_Hydrolase_4 Memb 99.8 1.7E-18 3.6E-23 124.5 12.4 104 37-159 11-117 (130)
40 cd04667 Nudix_Hydrolase_10 Mem 99.8 7.9E-19 1.7E-23 122.9 10.4 89 64-160 12-100 (112)
41 cd03426 CoAse Coenzyme A pyrop 99.8 7.5E-19 1.6E-23 130.5 10.1 110 40-161 2-118 (157)
42 cd03671 Ap4A_hydrolase_plant_l 99.8 2.3E-18 5.1E-23 126.3 11.5 111 38-161 2-131 (147)
43 PRK15472 nucleoside triphospha 99.8 2.9E-18 6.2E-23 124.7 11.6 96 64-160 16-124 (141)
44 cd03429 NADH_pyrophosphatase N 99.8 2.2E-18 4.7E-23 124.3 8.6 94 62-160 11-106 (131)
45 cd04661 MRP_L46 Mitochondrial 99.8 3.6E-18 7.7E-23 123.4 9.7 99 62-161 12-120 (132)
46 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 2.8E-18 6.2E-23 123.8 8.9 106 40-160 3-114 (137)
47 cd04662 Nudix_Hydrolase_5 Memb 99.8 2.3E-17 4.9E-22 118.3 12.7 57 41-106 2-65 (126)
48 cd02885 IPP_Isomerase Isopente 99.8 6.5E-18 1.4E-22 126.3 9.7 110 39-161 30-148 (165)
49 cd04665 Nudix_Hydrolase_8 Memb 99.7 2.8E-17 6.1E-22 116.9 12.2 91 64-158 12-102 (118)
50 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.8E-17 4E-22 117.7 10.8 95 63-159 13-112 (129)
51 cd04693 Nudix_Hydrolase_34 Mem 99.7 8.3E-18 1.8E-22 120.1 8.0 95 63-161 12-113 (127)
52 cd04692 Nudix_Hydrolase_33 Mem 99.7 1.6E-17 3.4E-22 121.4 9.6 114 39-161 2-127 (144)
53 cd04697 Nudix_Hydrolase_38 Mem 99.7 1.4E-17 3.1E-22 119.1 9.0 94 63-160 12-111 (126)
54 PRK00714 RNA pyrophosphohydrol 99.7 2.3E-17 5E-22 122.5 10.0 112 37-161 6-135 (156)
55 cd02883 Nudix_Hydrolase Nudix 99.7 8.4E-17 1.8E-21 111.9 11.9 97 63-160 12-111 (123)
56 PRK05379 bifunctional nicotina 99.7 5E-17 1.1E-21 134.5 11.6 108 39-160 203-321 (340)
57 PRK15393 NUDIX hydrolase YfcD; 99.7 3.9E-17 8.4E-22 124.0 9.7 136 10-161 8-149 (180)
58 PRK10546 pyrimidine (deoxy)nuc 99.7 1.9E-16 4.2E-21 113.8 12.5 92 64-160 16-111 (135)
59 PRK00241 nudC NADH pyrophospha 99.7 8.6E-17 1.9E-21 128.3 11.5 93 63-160 143-237 (256)
60 cd04694 Nudix_Hydrolase_35 Mem 99.7 1.5E-16 3.4E-21 116.6 9.3 98 63-161 13-131 (143)
61 PRK11762 nudE adenosine nucleo 99.7 2.2E-16 4.7E-21 120.3 10.1 95 63-160 59-158 (185)
62 PRK03759 isopentenyl-diphospha 99.7 2.5E-16 5.4E-21 119.8 10.3 110 38-160 33-151 (184)
63 PRK10707 putative NUDIX hydrol 99.7 9E-16 1.9E-20 117.5 12.6 111 38-161 29-146 (190)
64 cd04685 Nudix_Hydrolase_26 Mem 99.7 5.6E-16 1.2E-20 112.3 10.1 107 41-160 2-122 (133)
65 cd04663 Nudix_Hydrolase_6 Memb 99.7 2.3E-15 4.9E-20 108.1 13.0 100 61-163 12-118 (126)
66 PRK10776 nucleoside triphospha 99.7 2.2E-15 4.7E-20 106.9 12.9 93 63-160 16-112 (129)
67 PRK10729 nudF ADP-ribose pyrop 99.7 9.9E-16 2.1E-20 118.3 10.6 108 40-161 50-171 (202)
68 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 2.2E-15 4.8E-20 114.7 11.4 45 60-104 46-90 (186)
69 cd03425 MutT_pyrophosphohydrol 99.6 6E-15 1.3E-19 103.4 12.7 93 63-160 13-109 (124)
70 TIGR00052 nudix-type nucleosid 99.6 1.1E-15 2.3E-20 116.7 9.2 109 39-161 44-165 (185)
71 TIGR00586 mutt mutator mutT pr 99.6 9.9E-15 2.1E-19 103.7 13.6 93 63-160 16-112 (128)
72 cd04674 Nudix_Hydrolase_16 Mem 99.6 7E-15 1.5E-19 104.5 12.6 106 37-158 2-112 (118)
73 TIGR02705 nudix_YtkD nucleosid 99.6 4.1E-15 9E-20 110.4 11.7 89 64-159 36-125 (156)
74 cd03676 Nudix_hydrolase_3 Memb 99.6 2.8E-15 6.1E-20 113.5 11.0 100 62-161 47-158 (180)
75 TIGR02150 IPP_isom_1 isopenten 99.6 1.1E-14 2.4E-19 108.2 10.8 108 38-160 26-141 (158)
76 PRK15009 GDP-mannose pyrophosp 99.6 2.4E-14 5.2E-19 109.7 10.0 107 40-161 46-166 (191)
77 PLN02709 nudix hydrolase 99.5 1.1E-13 2.4E-18 107.9 10.5 115 37-159 30-153 (222)
78 PRK08999 hypothetical protein; 99.5 5.5E-13 1.2E-17 108.8 12.4 93 63-160 17-113 (312)
79 COG0494 MutT NTP pyrophosphohy 99.5 4.9E-13 1.1E-17 94.9 10.5 98 63-161 24-134 (161)
80 COG2816 NPY1 NTP pyrophosphohy 99.4 1E-13 2.2E-18 110.6 5.4 93 64-161 156-250 (279)
81 PLN03143 nudix hydrolase; Prov 99.4 6.7E-12 1.4E-16 101.6 11.0 46 61-106 141-191 (291)
82 PLN02791 Nudix hydrolase homol 99.2 7.6E-11 1.6E-15 105.8 10.2 134 12-159 4-156 (770)
83 PLN02552 isopentenyl-diphospha 99.2 2.9E-10 6.3E-15 90.2 10.7 111 37-160 54-202 (247)
84 KOG3084 NADH pyrophosphatase I 99.2 4.8E-11 1E-15 96.2 5.9 65 34-110 183-249 (345)
85 COG4119 Predicted NTP pyrophos 99.1 2E-10 4.4E-15 81.5 6.1 69 38-115 2-77 (161)
86 KOG3041 Nucleoside diphosphate 99.0 5.5E-09 1.2E-13 79.3 11.6 50 60-109 85-138 (225)
87 KOG3069 Peroxisomal NUDIX hydr 98.9 2.6E-09 5.7E-14 83.1 7.2 112 39-159 42-161 (246)
88 KOG0648 Predicted NUDIX hydrol 98.8 8.6E-10 1.9E-14 88.7 1.5 111 37-160 113-230 (295)
89 cd03431 DNA_Glycosylase_C DNA 98.7 1.8E-07 3.8E-12 64.9 10.1 86 63-159 14-103 (118)
90 PLN02839 nudix hydrolase 98.6 2.8E-07 6E-12 76.6 9.2 99 61-160 216-326 (372)
91 KOG4195 Transient receptor pot 98.4 4.6E-07 1E-11 70.1 5.0 65 37-101 110-177 (275)
92 COG1443 Idi Isopentenyldiphosp 98.3 1.4E-06 3E-11 65.2 4.8 111 39-162 33-154 (185)
93 PF14815 NUDIX_4: NUDIX domain 97.9 0.00011 2.4E-09 51.2 8.5 91 62-160 8-102 (114)
94 PF13869 NUDIX_2: Nucleotide h 97.6 0.0002 4.4E-09 54.5 6.3 63 32-104 35-98 (188)
95 KOG2937 Decapping enzyme compl 97.5 3.5E-05 7.7E-10 62.9 1.1 59 37-106 80-138 (348)
96 COG4112 Predicted phosphoester 97.4 0.0011 2.4E-08 49.3 8.0 95 64-159 73-185 (203)
97 KOG4432 Uncharacterized NUDIX 97.1 0.0023 5E-08 52.0 6.9 64 76-140 81-144 (405)
98 KOG1689 mRNA cleavage factor I 96.3 0.0038 8.2E-08 46.8 3.2 59 33-102 62-122 (221)
99 KOG4313 Thiamine pyrophosphoki 94.9 0.039 8.4E-07 43.9 4.0 99 61-159 146-256 (306)
100 KOG4432 Uncharacterized NUDIX 94.4 0.2 4.4E-06 41.0 7.2 82 76-160 286-375 (405)
101 KOG4548 Mitochondrial ribosoma 94.4 0.18 3.8E-06 40.2 6.7 97 63-160 139-246 (263)
102 KOG0142 Isopentenyl pyrophosph 93.5 0.086 1.9E-06 40.7 3.3 73 88-160 104-182 (225)
103 PF14443 DBC1: DBC1 87.2 4.4 9.6E-05 29.0 7.0 46 62-107 7-60 (126)
104 PRK10880 adenine DNA glycosyla 87.1 5.1 0.00011 33.7 8.5 34 64-104 243-280 (350)
105 PF03487 IL13: Interleukin-13; 74.0 3.3 7.2E-05 23.5 2.1 23 79-101 14-36 (43)
106 PF07026 DUF1317: Protein of u 72.0 8.8 0.00019 23.7 3.7 14 74-87 22-35 (60)
107 COG4111 Uncharacterized conser 70.0 30 0.00065 28.0 7.3 72 60-136 34-108 (322)
108 TIGR01084 mutY A/G-specific ad 45.0 67 0.0014 26.0 5.6 19 63-81 239-261 (275)
109 PRK13910 DNA glycosylase MutY; 30.8 73 0.0016 26.1 3.7 17 64-80 198-217 (289)
110 PF14044 NETI: NETI protein 26.1 64 0.0014 19.8 2.0 21 82-104 3-23 (57)
111 KOG2937 Decapping enzyme compl 25.7 18 0.00039 30.2 -0.6 33 74-106 264-296 (348)
112 PF06453 LT-IIB: Type II heat- 24.5 60 0.0013 22.5 1.9 26 60-86 55-80 (122)
113 KOG0648 Predicted NUDIX hydrol 24.3 42 0.0009 27.6 1.2 34 74-108 55-88 (295)
114 PF09505 Dimeth_Pyl: Dimethyla 21.6 57 0.0012 27.4 1.6 25 82-106 408-432 (466)
115 PF13014 KH_3: KH domain 20.6 99 0.0022 17.0 2.0 17 93-109 12-28 (43)
116 COG4353 Uncharacterized conser 20.4 1E+02 0.0022 23.2 2.5 15 75-89 128-142 (192)
No 1
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.91 E-value=1.8e-23 Score=149.40 Aligned_cols=112 Identities=39% Similarity=0.645 Sum_probs=89.4
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee-ceeeeEEEEe
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFK 118 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~-~~~l~~~~~~ 118 (163)
.++|+|+++.+ ++..+|||+++...+.|.+|||++++|||+++||+||++||||+.+... .. ++.+.+.
T Consensus 1 ~~~g~v~~~~~---------~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~-l~~~~~~ 70 (122)
T cd04666 1 LQAGAIPYRET---------GGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP-LGRFEYR 70 (122)
T ss_pred CEEEEEEEEEc---------CCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE-EEEEEee
Confidence 36899999875 3467899999987789999999999999999999999999999998776 66 8888776
Q ss_pred eCCC--CceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 119 SRAH--NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 119 ~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.... ......++|.+.+......+++.+..+++|++++++...
T Consensus 71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~ 115 (122)
T cd04666 71 KRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALL 115 (122)
T ss_pred ecCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHh
Confidence 5532 235667888888765544445555678999999998654
No 2
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.89 E-value=2.3e-22 Score=143.48 Aligned_cols=112 Identities=23% Similarity=0.294 Sum_probs=85.4
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~ 118 (163)
+.+|++|+++.+ +++++|||++++..+.|.||||++++|||+++||.||++||||+.+..... ++.+.+.
T Consensus 1 ~~~a~~ii~~~~---------~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 70 (131)
T cd03673 1 VLAAGGVVFRGS---------DGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYW 70 (131)
T ss_pred CeeEEEEEEEcc---------CCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEEEEEe
Confidence 368899999875 456799999998878999999999999999999999999999999887776 7766654
Q ss_pred eCCC--CceEEEEEEEEEeccccCCC-CcCcceeEEEEecCCCcc
Q 031232 119 SRAH--NTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 119 ~~~~--~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~e~~~ 160 (163)
.... ......++|.+......... ++.+..+++|++++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 115 (131)
T cd03673 71 FSSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARD 115 (131)
T ss_pred ccCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHH
Confidence 4321 22455666776655432221 344568999999988754
No 3
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=1.6e-21 Score=138.87 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=82.9
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~ 114 (163)
||++|++++++.+ ++|||++|.. .+.|.+|||++++|||+++||+||++||||+.+..... ++.
T Consensus 1 ~~~~~~~~i~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~-~~~ 67 (125)
T cd04679 1 PRVGCGAAILRDD------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL-LCV 67 (125)
T ss_pred CceEEEEEEECCC------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceE-EEE
Confidence 5789999998752 3799999864 37899999999999999999999999999999877666 666
Q ss_pred EEEeeCCCCceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCcc
Q 031232 115 WNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~ 160 (163)
+.+.......+...++|.+........ ...++..+++|++++++..
T Consensus 68 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~ 114 (125)
T cd04679 68 VDHIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQ 114 (125)
T ss_pred EeecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCc
Confidence 554433334456667787766543222 2233457899999998764
No 4
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.87 E-value=3e-22 Score=144.26 Aligned_cols=120 Identities=48% Similarity=0.769 Sum_probs=100.2
Q ss_pred cccC-CCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232 32 QRYQ-KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (163)
Q Consensus 32 ~~~~-~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~ 109 (163)
|+|+ .++|+++|||+++.+ ....+||||+..+ +..|.+|+|++|++|+..+||.||..||+|+.....+
T Consensus 1 qry~~~G~r~vagCi~~r~~---------~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~ 71 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSD---------KEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR 71 (145)
T ss_pred CccCCCCcEEEEEeeeeeec---------CcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence 5788 599999999999985 2357899999887 4689999999999999999999999999999999888
Q ss_pred eeeeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCc--ceeEEEEecCCCcc
Q 031232 110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWVCTFMPVT 160 (163)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~~~~e~~~ 160 (163)
...+...+.+....+.+..+.|.+.+.+..+.+|+.+ ..+.+|++++||+.
T Consensus 72 ~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~ 124 (145)
T KOG2839|consen 72 LLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIE 124 (145)
T ss_pred cccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHH
Confidence 6255454555545556777889988888888888877 58999999999875
No 5
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.86 E-value=7.4e-21 Score=135.12 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=74.1
Q ss_pred eEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCC----ceEEEEEEEEEe
Q 031232 63 LEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN----TDYQGYMFPLLV 135 (163)
Q Consensus 63 ~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~----~~~~~~~f~~~~ 135 (163)
++|||+++++. +.|.+|||++++|||+++||+||++||||+.+..... ++.+.+...... .....++|.+..
T Consensus 11 ~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 89 (128)
T cd04684 11 GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR-LGSASRYFYSPDGDYDAHHLCVFYDARV 89 (128)
T ss_pred CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeeccee-eeEEEEEEECCCCCeeccEEEEEEEEEE
Confidence 37999999874 7899999999999999999999999999999877666 776554332221 245667788877
Q ss_pred ccccC--CCCcCcceeEEEEecCCCccC
Q 031232 136 QDQLA--EWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 136 ~~~~~--~~~~~e~~~~~W~~~~e~~~~ 161 (163)
..... ..+..+..+++|++++++...
T Consensus 90 ~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 90 VGGALPVQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred ecCccccCCCCCCceeeEEECHHHhhcc
Confidence 65432 334445578999999988743
No 6
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.86 E-value=8.6e-21 Score=139.10 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee--cee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CEL 111 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~--~~~ 111 (163)
.|+++|++||++.+ ++|||++|+. .|.|.||||++++|||+++||+||++||||+++... +.
T Consensus 10 ~p~v~v~~vI~~~~------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~- 76 (144)
T cd03430 10 TPLVSIDLIVENED------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL- 76 (144)
T ss_pred CCeEEEEEEEEeCC------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE-
Confidence 46789999998752 4799999864 378999999999999999999999999999998765 44
Q ss_pred eeEEEEeeC------CCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 112 LGEWNFKSR------AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 112 l~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
++.+..... ....++...+|.+.........+..+..+++|++++++..
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 131 (144)
T cd03430 77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLA 131 (144)
T ss_pred EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhc
Confidence 565543221 1223456667777665433233444568999999988764
No 7
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.85 E-value=4.2e-21 Score=137.28 Aligned_cols=112 Identities=22% Similarity=0.238 Sum_probs=82.0
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE--
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-- 116 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~-- 116 (163)
..++++|+|..+ +++.+|||+++++ +.|.+|||++++|||+.+||.||++||||+.+..... ++.+.
T Consensus 2 ~~~~g~vi~~~~---------~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 70 (130)
T cd03428 2 ERSAGAIIYRRL---------NNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI-VLGFKET 70 (130)
T ss_pred ceEEEEEEEEec---------CCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh-hccceeE
Confidence 367899999875 4667899999987 8999999999999999999999999999999776555 43222
Q ss_pred EeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 117 FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 117 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
+...........++|.+.+..........+..+++|++++++...
T Consensus 71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 115 (130)
T cd03428 71 LNYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKL 115 (130)
T ss_pred EEccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHH
Confidence 211112234556677777663322233345689999999987654
No 8
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.85 E-value=1.3e-20 Score=140.48 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=79.6
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--ecee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECEL 111 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~ 111 (163)
.+.++|++|+++. .++|||+||... +.|.||||+|++|||+++||+||++||||+.+.. ...
T Consensus 15 ~~~~~v~~vI~~~------------~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~- 81 (159)
T PRK15434 15 TPLISLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF- 81 (159)
T ss_pred CceEEEEEEEECC------------CCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceE-
Confidence 4567888888753 348999998752 7899999999999999999999999999998643 233
Q ss_pred eeEEEEeeCC------CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 112 LGEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 112 l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
++.+.+.... ...++..++|.+............+..+++|++++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~ 136 (159)
T PRK15434 82 YGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLA 136 (159)
T ss_pred EEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhh
Confidence 5544332221 122466778888765433333334568999999998865
No 9
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=138.83 Aligned_cols=110 Identities=21% Similarity=0.181 Sum_probs=85.5
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~ 113 (163)
.|...|++++.+.+ +|||++|+.. |.|.||||++|.|||+++||.||++||||+++...++ ++
T Consensus 8 ~p~~~v~~~i~~~~-------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~-~~ 73 (145)
T COG1051 8 TPLVAVGALIVRNG-------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLEL-LA 73 (145)
T ss_pred CcceeeeEEEEeCC-------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeE-EE
Confidence 67889999998763 7999999876 7899999999999999999999999999999888888 88
Q ss_pred EEEEeeCCCCceEEEEEEEEEec-cccCCCCcCcceeEEEEecCCCcc
Q 031232 114 EWNFKSRAHNTDYQGYMFPLLVQ-DQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
++....++...++..++|..... +.....+.++...+.|++++++..
T Consensus 74 v~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~ 121 (145)
T COG1051 74 VFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPE 121 (145)
T ss_pred EecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccc
Confidence 88777665444555555555443 323333333457899999998765
No 10
>PLN02325 nudix hydrolase
Probab=99.85 E-value=2.6e-20 Score=136.67 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=81.1
Q ss_pred cCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232 34 YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (163)
Q Consensus 34 ~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~ 110 (163)
+...+++.|++++++.+ +|||++|+. .+.|.+|||++++|||+++||+||++||||+++.....
T Consensus 4 ~~~~p~~~v~~vi~~~~-------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~ 70 (144)
T PLN02325 4 GEPIPRVAVVVFLLKGN-------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIEL 70 (144)
T ss_pred CCCCCeEEEEEEEEcCC-------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE
Confidence 44567888888888642 799999875 36899999999999999999999999999999887777
Q ss_pred eeeEEEEeeCC--CCceEEEEEEEEEeccccC--CCCc-CcceeEEEEecCCCcc
Q 031232 111 LLGEWNFKSRA--HNTDYQGYMFPLLVQDQLA--EWPE-KNVRSRKWVCTFMPVT 160 (163)
Q Consensus 111 ~l~~~~~~~~~--~~~~~~~~~f~~~~~~~~~--~~~~-~e~~~~~W~~~~e~~~ 160 (163)
++.+.+.... ...++..++|.+....... ...+ ++..+++||++++...
T Consensus 71 -l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~ 124 (144)
T PLN02325 71 -LTVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE 124 (144)
T ss_pred -EEEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence 7665433221 2234566677776543221 1112 2236789999998754
No 11
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=2.5e-20 Score=133.34 Aligned_cols=110 Identities=24% Similarity=0.153 Sum_probs=82.2
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~ 114 (163)
|+.+|++|+++.+ +++||++|.. .+.|.+|||++++|||+++||.||++||||+++..... ++.
T Consensus 1 p~~~v~~ii~~~~------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~-~~~ 67 (129)
T cd04678 1 PRVGVGVFVLNPK------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQF-LTV 67 (129)
T ss_pred CceEEEEEEECCC------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEE-EEE
Confidence 5788999999752 4799999873 47899999999999999999999999999999877666 665
Q ss_pred EEEeeCCCCceEEEEEEEEEeccccCCC---CcCcceeEEEEecCCCcc
Q 031232 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W~~~~e~~~ 160 (163)
+..........+...+|.+......... ..++..+++|++++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (129)
T cd04678 68 TNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS 116 (129)
T ss_pred EeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence 5443333344567778877766432221 123346889999998765
No 12
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=3.6e-20 Score=131.74 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=79.4
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEE
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~ 117 (163)
|++.|.+++++.+ +|||++++..+.|.+|||++++|||+++||.||++||||+.+..... ++.+..
T Consensus 1 p~~~v~~~i~~~~-------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~-~~~~~~ 66 (123)
T cd04672 1 PKVDVRAAIFKDG-------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL-AAVDDR 66 (123)
T ss_pred CcceEEEEEEECC-------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEE-EEEecc
Confidence 5678888888642 79999998888999999999999999999999999999999865555 555433
Q ss_pred eeCC---CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 118 KSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 118 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.... ...+....+|.+...... ..+..+..+++|+++++...+
T Consensus 67 ~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~l 112 (123)
T cd04672 67 NKHHPPPQPYQVYKLFFLCEILGGE-FKPNIETSEVGFFALDDLPPL 112 (123)
T ss_pred ccccCCCCceEEEEEEEEEEecCCc-ccCCCceeeeEEECHHHCccc
Confidence 2111 112344566777765432 223345688999999987553
No 13
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.84 E-value=2.7e-20 Score=133.96 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=78.4
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~ 118 (163)
+|++|+...+ ++||++|.+. +.|.+|||++++|||+++||.||++||||+++..... ++.+.+.
T Consensus 2 ~v~~ii~~~~-------------~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 67 (134)
T cd03675 2 TVAAVVERDG-------------RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LGIYQWT 67 (134)
T ss_pred eEEEEEEECC-------------EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EEEEEee
Confidence 5667766542 7999998754 5799999999999999999999999999999876666 6666554
Q ss_pred eCCCCceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCccC
Q 031232 119 SRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 119 ~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~~ 161 (163)
.......+..++|.+.+...... ..+.+..++.|++++++...
T Consensus 68 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 111 (134)
T cd03675 68 APDSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILAL 111 (134)
T ss_pred cCCCCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhh
Confidence 43323345566777776654322 23345678999999887643
No 14
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=1.5e-20 Score=135.30 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=77.2
Q ss_pred EEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE--EEE
Q 031232 42 VGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE--WNF 117 (163)
Q Consensus 42 v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~--~~~ 117 (163)
+|+|++... +++.+|||++|.. .|.|.+|||++++|||+.+||+||++||||+++..... .+. ..+
T Consensus 2 ~~~v~~~~~---------~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~ 71 (131)
T cd04695 2 VSGVLLRSL---------DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYN-ADYLEQFY 71 (131)
T ss_pred ceEEEEEEc---------CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccccc-ccceeeEe
Confidence 678888775 3567899999987 68999999999999999999999999999998764322 111 112
Q ss_pred eeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 118 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.. .....+...+|.+.........+.++..+++|++++++.+.
T Consensus 72 ~~-~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 114 (131)
T cd04695 72 EA-NDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALEL 114 (131)
T ss_pred ec-CCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHh
Confidence 21 22234455667766543322333445689999999988653
No 15
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.7e-20 Score=131.10 Aligned_cols=96 Identities=24% Similarity=0.270 Sum_probs=73.7
Q ss_pred eEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee-eeceeeeEEEEeeCCCCceEEEEEEEEEeccccCC
Q 031232 63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 141 (163)
Q Consensus 63 ~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 141 (163)
+++||++++..+.|.+|||++++|||+++||+||++||||+.+. .... ++.+.+.... .....++|.+........
T Consensus 12 ~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~-~~~~~~~~~~--~~~~~~~f~~~~~~~~~~ 88 (120)
T cd04680 12 GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSASG--SWDHVIVFRARADTQPVI 88 (120)
T ss_pred CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEecCCCC--CceEEEEEEecccCCCcc
Confidence 47999999877799999999999999999999999999999988 6666 7766654332 234556777766543323
Q ss_pred CCcCcceeEEEEecCCCccC
Q 031232 142 WPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 142 ~~~~e~~~~~W~~~~e~~~~ 161 (163)
.++.+..+++|++++++...
T Consensus 89 ~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 89 RPSHEISEARFFPPDALPEP 108 (120)
T ss_pred CCcccEEEEEEECHHHCccc
Confidence 34455689999999988653
No 16
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.84 E-value=5.6e-20 Score=130.93 Aligned_cols=105 Identities=20% Similarity=0.096 Sum_probs=76.9
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~ 119 (163)
++|++|+++.+ +|||++++..+.|.+|||++++|||+.+||.||++||||+++..... ++.+.+..
T Consensus 2 ~~~~~vi~~~~-------------~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~ 67 (125)
T cd04689 2 LRARAIVRAGN-------------KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRF-LGAIENQW 67 (125)
T ss_pred eEEEEEEEeCC-------------EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEE-EEEEeeee
Confidence 57888888642 79999998778999999999999999999999999999999887666 77655433
Q ss_pred CCCC--ceEEEEEEEEEecccc---CCCCcCcceeEEEEecCCC
Q 031232 120 RAHN--TDYQGYMFPLLVQDQL---AEWPEKNVRSRKWVCTFMP 158 (163)
Q Consensus 120 ~~~~--~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~e~ 158 (163)
...+ .....++|.+...... ....+.+..+++|+++++.
T Consensus 68 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 111 (125)
T cd04689 68 HEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDL 111 (125)
T ss_pred ccCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHc
Confidence 3222 2344567776654321 1222334578999999874
No 17
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=7.8e-20 Score=130.35 Aligned_cols=107 Identities=20% Similarity=0.122 Sum_probs=79.4
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~ 119 (163)
.+|.+|+++.+ +|||+++...+.|.+|||++++|||+.+||.||++||||+.+..... ++.+....
T Consensus 2 ~~v~~vi~~~~-------------~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~ 67 (126)
T cd04688 2 VRAAAIIIHNG-------------KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRL-LGVVENIF 67 (126)
T ss_pred eEEEEEEEECC-------------EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceeccee-eEEEEEee
Confidence 46777777642 79999887768899999999999999999999999999999887776 66654322
Q ss_pred C--CCCceEEEEEEEEEeccccCCC-------CcCcceeEEEEecCCCcc
Q 031232 120 R--AHNTDYQGYMFPLLVQDQLAEW-------PEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 120 ~--~~~~~~~~~~f~~~~~~~~~~~-------~~~e~~~~~W~~~~e~~~ 160 (163)
. ........++|.+......... ++.+..+++|++++++..
T Consensus 68 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 117 (126)
T cd04688 68 TYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE 117 (126)
T ss_pred ccCCcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence 2 2223456778888776543221 334468999999988764
No 18
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.4e-19 Score=129.53 Aligned_cols=111 Identities=19% Similarity=0.082 Sum_probs=75.7
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE-
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN- 116 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~- 116 (163)
+...|++++++. +++|||++|...+.|.||||++++|||+++||.||++||||+.+..... ++.+.
T Consensus 6 ~~~~~~~~v~~~------------~~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~-~~~~~~ 72 (132)
T cd04677 6 ILVGAGVILLNE------------QGEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL-LGVYSG 72 (132)
T ss_pred cccceEEEEEeC------------CCCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE-EEEecC
Confidence 345566666643 2479999988778899999999999999999999999999999887666 55432
Q ss_pred ---EeeCCCC-c-eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 117 ---FKSRAHN-T-DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 117 ---~~~~~~~-~-~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
+...... . ....++|.+.........+..+..+++|++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 122 (132)
T cd04677 73 KEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPEL 122 (132)
T ss_pred CceeecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccc
Confidence 2111111 1 2333444444433222334455688999999998764
No 19
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.5e-19 Score=129.37 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=77.8
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~ 116 (163)
|.+|++|+++.+ +|||+++.+. +.|.+|||++++|||+++||.||++||||+.+..... ++.+.
T Consensus 1 r~~a~~iv~~~~-------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~-~~~~~ 66 (128)
T cd04687 1 RNSAKAVIIKND-------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL-LFVRE 66 (128)
T ss_pred CcEEEEEEEECC-------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcE-EEEEE
Confidence 467888888643 7999998654 5699999999999999999999999999999876655 44444
Q ss_pred EeeC------CCCceEEEEEEEEEeccccC----CCCcCcceeEEEEecCCCccC
Q 031232 117 FKSR------AHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 117 ~~~~------~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~e~~~~ 161 (163)
+... ....+...++|.+....... ..++.+..+++|++++++...
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 67 YIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred EeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 4321 11234566778777654321 122333468999999987653
No 20
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.3e-19 Score=127.73 Aligned_cols=96 Identities=23% Similarity=0.233 Sum_probs=70.1
Q ss_pred EEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCC----CceEEEEEEEEEec
Q 031232 64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH----NTDYQGYMFPLLVQ 136 (163)
Q Consensus 64 ~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~----~~~~~~~~f~~~~~ 136 (163)
++||++++. .+.|.+|||++++|||+++||.||++||||+++..... ++.+.+..... ......++|.+...
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRL-LTVVDVIERDAAGRVEFHYVLIDFLCRYL 90 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeecee-EEEEEEeeccCCCccceEEEEEEEEEEeC
Confidence 699999875 36799999999999999999999999999999877666 66655443221 12344555666554
Q ss_pred cccCCCCcCcceeEEEEecCCCccC
Q 031232 137 DQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 137 ~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
... ..+..+..+++|++++++...
T Consensus 91 ~~~-~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 91 GGE-PVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred CCc-ccCCcccceeEEECHHHHhhC
Confidence 332 233445678999999987653
No 21
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.83 E-value=1.3e-19 Score=132.40 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=80.3
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~ 115 (163)
..+|++|+++.+ ++|||++++.. +.|.||||++++|||+++||+||++||||+++..... ++.+
T Consensus 13 ~~av~~vv~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~ 79 (142)
T cd04700 13 ARAAGAVILNER------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LGTY 79 (142)
T ss_pred eeeEEEEEEeCC------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EEEE
Confidence 578888888642 36999987643 6799999999999999999999999999999887766 7766
Q ss_pred EEeeCCCCceEEEEEEEEEecccc-CCCCcCcceeEEEEecCCCccCC
Q 031232 116 NFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWVCTFMPVTCF 162 (163)
Q Consensus 116 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~ 162 (163)
.+.... ......++|.+...... .+....+..+++||+++++...+
T Consensus 80 ~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 126 (142)
T cd04700 80 LGRFDD-GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLY 126 (142)
T ss_pred EEEcCC-CcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcc
Confidence 543332 22344567777664321 22233456899999999887643
No 22
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=8.9e-20 Score=129.97 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=75.8
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~ 116 (163)
|.++|++++++.+ ++|||+++.. .+.|.+|||++++|||+++||.||++||||+++..... ++...
T Consensus 1 p~~~v~~~i~~~~------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~ 67 (125)
T cd04696 1 PLVTVGALIYAPD------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF-AMVQE 67 (125)
T ss_pred CccEEEEEEECCC------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccce-EEEEE
Confidence 4577888888642 3699998754 47899999999999999999999999999999876554 44332
Q ss_pred Eee--CC-CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 117 FKS--RA-HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 117 ~~~--~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
+.. .. ...++..+.|.+..... ...+..+..+++|++++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04696 68 AIFSEEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALD 113 (125)
T ss_pred EeccCCCCCccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhc
Confidence 221 11 12234455566655432 223344568999999998754
No 23
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.83 E-value=1.1e-19 Score=132.09 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=74.9
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee-----
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG----- 113 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~----- 113 (163)
+.+|++++++. +.++|||++|+..+.|.+|||++++|||+++||.||++||||+++..... .+
T Consensus 2 ~~~~~~~v~~~-----------~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~ 69 (138)
T cd03674 2 HFTASAFVVNP-----------DRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP-LSVLVDL 69 (138)
T ss_pred cEEEEEEEEeC-----------CCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee-ccccccc
Confidence 46788888864 23589999998888999999999999999999999999999998654333 22
Q ss_pred -EEEEeeCCC----CceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCcc
Q 031232 114 -EWNFKSRAH----NTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 114 -~~~~~~~~~----~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~ 160 (163)
.+....... ...+...+|.+.+...... .+..+..+++|++++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 70 DVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred eeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhh
Confidence 111111111 1233445677765432222 1344567899999998743
No 24
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.3e-19 Score=127.42 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=71.7
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--eceeeeEEEEeeCCC-CceEEEEEEEEEeccccC
Q 031232 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLA 140 (163)
Q Consensus 64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~ 140 (163)
++||++++..+.|.+|||++++|||+++||.||++||||+.+.. ... ++.+....... ......++|.+.... .
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~--~ 89 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEY-LGTFRAPAANEPGVDVRATVYVAELTG--E 89 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEecccccCCCcEEEEEEEEEcccC--C
Confidence 79999998888999999999999999999999999999999776 555 66665432221 234566777776654 2
Q ss_pred CCCcCcceeEEEEecCCCcc
Q 031232 141 EWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 141 ~~~~~e~~~~~W~~~~e~~~ 160 (163)
..+..+..+++|++++++..
T Consensus 90 ~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 90 PVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred cCCCchhhccEEecHHHccc
Confidence 33444567899999999643
No 25
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.82 E-value=2.2e-19 Score=129.48 Aligned_cols=96 Identities=23% Similarity=0.154 Sum_probs=72.6
Q ss_pred eEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232 63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (163)
Q Consensus 63 ~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (163)
++|||++|.. .+.|.+|||++++|||+.+||+||++||||+.+..... ++.+.+...........++|.+......
T Consensus 12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 90 (137)
T cd03427 12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGIIKFPFPGEEERYGVFVFLATEFEGE 90 (137)
T ss_pred CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEEEEEEcCCCCcEEEEEEEEECCcccc
Confidence 3799999886 47899999999999999999999999999999887776 7777665443234556677776554332
Q ss_pred CCCCcCcceeEEEEecCCCcc
Q 031232 140 AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 140 ~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.. ...+..+++|++++++..
T Consensus 91 ~~-~~~e~~~~~W~~~~el~~ 110 (137)
T cd03427 91 PL-KESEEGILDWFDIDDLPL 110 (137)
T ss_pred cC-CCCccccceEEcHhhccc
Confidence 22 233446899999998764
No 26
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.82 E-value=6.5e-20 Score=134.72 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=71.2
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~ 119 (163)
.++++|+++.+ .++|||+++...+.|.||||++++|||+.+||+||++||||+.+..... ...+. .
T Consensus 2 p~~gaii~~~~-----------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~--~ 67 (145)
T cd03672 2 PVYGAIILNED-----------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYI--E 67 (145)
T ss_pred CeeEEEEEeCC-----------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceee--e
Confidence 36788888752 2479999998778999999999999999999999999999998765322 12222 1
Q ss_pred CCCCceEEEEEEEEE-eccccC--CCCcCcceeEEEEecCCCccC
Q 031232 120 RAHNTDYQGYMFPLL-VQDQLA--EWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 120 ~~~~~~~~~~~f~~~-~~~~~~--~~~~~e~~~~~W~~~~e~~~~ 161 (163)
....... .++|.+. ...... ..+..+..+++|++++++...
T Consensus 68 ~~~~~~~-~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 111 (145)
T cd03672 68 LIIRGQN-VKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTK 111 (145)
T ss_pred cccCCcE-EEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhh
Confidence 1111112 2334332 222111 223345689999999887653
No 27
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.8e-19 Score=126.20 Aligned_cols=97 Identities=20% Similarity=0.112 Sum_probs=68.0
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--eceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQD 137 (163)
Q Consensus 64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 137 (163)
+|||++|... +.|.+|||++++|||+++||.||++||||+.+.. ... ++.+.+.... ......++|.+....
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~ 89 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHTMHRRTED-IESRIGLFFTVRRWS 89 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEEecCCC-CceEEEEEEEEEeec
Confidence 7999998653 6899999999999999999999999999998763 333 5555443322 223455667665433
Q ss_pred ccC-CCCcCcceeEEEEecCCCccCC
Q 031232 138 QLA-EWPEKNVRSRKWVCTFMPVTCF 162 (163)
Q Consensus 138 ~~~-~~~~~e~~~~~W~~~~e~~~~~ 162 (163)
... ....++..+++|++++++...+
T Consensus 90 ~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 90 GEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred CccccCCCCcEeeEEEEchHHCcchh
Confidence 222 2223345789999999886543
No 28
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.5e-19 Score=127.86 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=72.4
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~ 116 (163)
.+.|++++++. .++|||++++. .+.|.+|||++++|||+++||.||++||||+.+..... ++...
T Consensus 2 ~~~~~~~v~~~------------~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~-~~~~~ 68 (127)
T cd04670 2 TVGVGGLVLNE------------KNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSV-VGFRH 68 (127)
T ss_pred eeEEEEEEEcC------------CCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEE-EEEEe
Confidence 45677788764 24799999877 58899999999999999999999999999999876555 54333
Q ss_pred EeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232 117 FKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 117 ~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~ 160 (163)
+...... ....+|.+.+.... ....+++..+++|++++++.+
T Consensus 69 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 69 AHPGAFG--KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred cCCCCcC--ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 2221111 12233444443211 112233457899999998753
No 29
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.81 E-value=1.2e-19 Score=129.83 Aligned_cols=110 Identities=21% Similarity=0.161 Sum_probs=77.3
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE--
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-- 116 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~-- 116 (163)
+|.+++++.. ++++|||++|.. .+.|.+|||++++|||+.+||.||++||||+.+..... ++.+.
T Consensus 3 ~~~v~~~~~~----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~ 71 (129)
T cd04664 3 SVLVVPYRLT----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASI 71 (129)
T ss_pred EEEEEEEEeC----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-Eeecccc
Confidence 4666777652 456899999987 58899999999999999999999999999999754443 33332
Q ss_pred --EeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 117 --FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 117 --~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
+...........++|.+.+........+.+..+++|++++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~ 118 (129)
T cd04664 72 AFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL 118 (129)
T ss_pred cccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHH
Confidence 111112234566788887665432223334578999999987653
No 30
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=1.9e-19 Score=129.74 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=73.8
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCee-eeeceeeeEEEEee
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWNFKS 119 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~-~~~~~~l~~~~~~~ 119 (163)
+|++|+++.+ +|||+++++.+.|.||||++++|||+.+||+||++||||+.+ ..... ++.+....
T Consensus 2 ~~~~ii~~~~-------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-l~~~~~~~ 67 (131)
T cd04686 2 AVRAIILQGD-------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEK-FGTYTERR 67 (131)
T ss_pred cEEEEEEECC-------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceE-EEEEEeec
Confidence 5778888753 799999987788999999999999999999999999999986 34444 66554211
Q ss_pred --CCC---CceEEEEEEEEEeccccC-CCCc-Ccc---eeEEEEecCCCcc
Q 031232 120 --RAH---NTDYQGYMFPLLVQDQLA-EWPE-KNV---RSRKWVCTFMPVT 160 (163)
Q Consensus 120 --~~~---~~~~~~~~f~~~~~~~~~-~~~~-~e~---~~~~W~~~~e~~~ 160 (163)
... ..+...++|.+.+..... ...+ .+. ..++|++++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~ 118 (131)
T cd04686 68 PWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIE 118 (131)
T ss_pred cccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHH
Confidence 111 113456778887654321 1111 111 3589999998764
No 31
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=6.7e-19 Score=124.73 Aligned_cols=109 Identities=19% Similarity=0.124 Sum_probs=75.7
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEE-
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF- 117 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~- 117 (163)
+..|++|+++. ++++||++|...+.|.||||++++|||+++||.||++||||+++..... ++.+..
T Consensus 2 ~~~v~~ii~~~------------~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~ 68 (129)
T cd04676 2 LPGVTAVVRDD------------EGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGL-VGIYTGP 68 (129)
T ss_pred cceEEEEEECC------------CCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEE-EEEeecc
Confidence 56777777754 2479999998888999999999999999999999999999999876554 443221
Q ss_pred ----eeCCCC-ceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 118 ----KSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 118 ----~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
...... .....++|.+.........+..+..+++|++++++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~ 116 (129)
T cd04676 69 VHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPP 116 (129)
T ss_pred cceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCcc
Confidence 111111 1344455655544332222344557899999998765
No 32
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.81 E-value=8.7e-20 Score=133.78 Aligned_cols=111 Identities=19% Similarity=0.164 Sum_probs=74.7
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee-ee--
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LG-- 113 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~-l~-- 113 (163)
++.+|++++++.+ ++|||++|+.. +.|.+|||++|+|||+++||+||++||||+++...... ++
T Consensus 6 ~~~~v~~vi~~~~------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~ 73 (148)
T PRK09438 6 RPVSVLVVIYTPD------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQ 73 (148)
T ss_pred CceEEEEEEEeCC------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccc
Confidence 4678888888642 36999988654 78999999999999999999999999999987322110 11
Q ss_pred ---EEEEe------eCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 114 ---EWNFK------SRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 114 ---~~~~~------~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.+.+. ..........++|.+.........+ ++..+++|++++++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~ 129 (148)
T PRK09438 74 RSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPVVL-TEHLAYQWLDAREAAAL 129 (148)
T ss_pred cccccccchhhhhccccccCCceeEEEEEecCCCCcccc-CcccceeeCCHHHHHHH
Confidence 11111 0111123455777776554322222 35689999999988654
No 33
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.5e-19 Score=125.94 Aligned_cols=92 Identities=22% Similarity=0.177 Sum_probs=66.3
Q ss_pred EEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 64 ~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
+|||++|.. .+.|.||||++++|||+++||+||++||||+++..... ++.+.+... .....++|.+.....
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~---~~~~~~~~~~~~~~~ 87 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-LCSLYHPTS---ELQLLHYYVVTFWQG 87 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeccCC---CeEEEEEEEEEEecC
Confidence 799999864 26899999999999999999999999999999654444 554433221 234456666654432
Q ss_pred cCCCCcCcceeEEEEecCCCccC
Q 031232 139 LAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.. ...+..+++|++++++..+
T Consensus 88 ~~--~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 88 EI--PAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred CC--CcccccccEEcCHHHcchh
Confidence 22 2245679999999988654
No 34
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=5.2e-19 Score=126.42 Aligned_cols=101 Identities=21% Similarity=0.215 Sum_probs=73.1
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEE
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~ 117 (163)
+|++|+++. +++|||+++.+. +.|.+|||++++|||+++||+||++||||+++..... ++....
T Consensus 2 ~~~~vv~~~------------~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~ 68 (123)
T cd04671 2 IVAAVILNN------------QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTL-LSVEEQ 68 (123)
T ss_pred EEEEEEEcC------------CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceE-EEEEcc
Confidence 567777753 247999998643 6899999999999999999999999999999887666 554321
Q ss_pred eeCCCCceEEEEEEEEEecccc-CC--CCcCcceeEEEEecCCCc
Q 031232 118 KSRAHNTDYQGYMFPLLVQDQL-AE--WPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 118 ~~~~~~~~~~~~~f~~~~~~~~-~~--~~~~e~~~~~W~~~~e~~ 159 (163)
......++|.+...+.. .. .++.+..+++|++++++.
T Consensus 69 -----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 69 -----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred -----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCC
Confidence 12345667777665432 11 123345689999999873
No 35
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5.3e-19 Score=126.44 Aligned_cols=96 Identities=24% Similarity=0.184 Sum_probs=68.0
Q ss_pred eEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee--CCCCceEEEEEEEEEecc
Q 031232 63 LEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS--RAHNTDYQGYMFPLLVQD 137 (163)
Q Consensus 63 ~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~--~~~~~~~~~~~f~~~~~~ 137 (163)
++|||++|... +.|.+|||++++|||+.+||.||++||||+++..... ++.+.... .........++|.+.+..
T Consensus 13 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (130)
T cd04681 13 GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY-LFSLPNTYPYGGMEYDTLDLFFVCQVDD 91 (130)
T ss_pred CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeE-EEeecceeeeCCceeEEEEEEEEEEeCC
Confidence 47999988643 6899999999999999999999999999999876665 55543222 111223334567776654
Q ss_pred ccCCCCcCcceeEEEEecCCCc
Q 031232 138 QLAEWPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 138 ~~~~~~~~e~~~~~W~~~~e~~ 159 (163)
.......++..+++|++++++.
T Consensus 92 ~~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 92 KPIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred CCCcCChHHhheeEEecHHHCC
Confidence 3322333456889999999863
No 36
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.5e-19 Score=124.40 Aligned_cols=101 Identities=27% Similarity=0.183 Sum_probs=71.6
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~ 118 (163)
.|++|+++. +++|||++|... +.|.||||++++|||+++||+||++||||+++..... ++.+.+
T Consensus 2 ~~~~ii~~~------------~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~-~~~~~~- 67 (121)
T cd04669 2 RASIVIIND------------QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI-FLIVNQ- 67 (121)
T ss_pred ceEEEEEeC------------CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeE-EEEEee-
Confidence 466777764 237999998654 5799999999999999999999999999999977666 665544
Q ss_pred eCCCCceEEEEEEEEEeccccCC--C-------CcCcceeEEEEecCCCcc
Q 031232 119 SRAHNTDYQGYMFPLLVQDQLAE--W-------PEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 119 ~~~~~~~~~~~~f~~~~~~~~~~--~-------~~~e~~~~~W~~~~e~~~ 160 (163)
. . ...++|.+........ . .+.+..+++|++++++..
T Consensus 68 -~--~--~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~ 113 (121)
T cd04669 68 -N--G--RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLET 113 (121)
T ss_pred -C--C--cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHccc
Confidence 1 1 2345676655432111 0 122245789999998764
No 37
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.80 E-value=3.7e-19 Score=126.66 Aligned_cols=110 Identities=25% Similarity=0.262 Sum_probs=81.2
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l 112 (163)
++.+|++|+++.+ ++|||+++.+. +.|.+|||++++|||+.+||+||++||||+.+..... +
T Consensus 1 ~~~~v~~ii~~~~------------~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~-~ 67 (134)
T PF00293_consen 1 WRRAVGVIIFNED------------GKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLEL-L 67 (134)
T ss_dssp EEEEEEEEEEETT------------TEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE-E
T ss_pred CCCEEEEEEEeCC------------cEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccc-c
Confidence 3688999999863 28999999876 5799999999999999999999999999999866555 5
Q ss_pred eEEEEeeCCCCc-eEEEEEEEEEecccc-CC-CCcCcceeEEEEecCCCcc
Q 031232 113 GEWNFKSRAHNT-DYQGYMFPLLVQDQL-AE-WPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~f~~~~~~~~-~~-~~~~e~~~~~W~~~~e~~~ 160 (163)
+.+.+....... ....++|.+...... .. ....+..+++|++++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 118 (134)
T PF00293_consen 68 GLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLE 118 (134)
T ss_dssp EEEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHH
T ss_pred eeeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhh
Confidence 555555443332 345566666555433 22 2222568999999998754
No 38
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3.4e-19 Score=126.53 Aligned_cols=96 Identities=17% Similarity=0.022 Sum_probs=67.1
Q ss_pred eEEEEEEEcCC------CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232 63 LEVLVISSQKG------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 136 (163)
Q Consensus 63 ~~vLLv~r~~~------~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 136 (163)
++|||++|... |.|.||||+++.|||+++||.||++||||+++..... .....+.... .....++|.+...
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~f~~~~~ 88 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSAS--PPGTEHVFVVPLT 88 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccCC--CCceEEEEEEEEe
Confidence 47999998643 7899999999999999999999999999999764333 2222222221 2234566766655
Q ss_pred ccc-CCCCcCcceeEEEEecCCCccC
Q 031232 137 DQL-AEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 137 ~~~-~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
... .....++..+++|+++++...+
T Consensus 89 ~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 89 AREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred cCCCccccCchhheeecccHHHHhhc
Confidence 432 2334445678999999987654
No 39
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.79 E-value=1.7e-18 Score=124.46 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~ 113 (163)
.++.+|++|+++.+ +|||++|.. .+.|.+|||++++|||+++||.||++||||+++..... ++
T Consensus 11 ~~~~~v~~ii~~~~-------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~-~~ 76 (130)
T cd04511 11 NPKIIVGCVPEWEG-------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGL-YA 76 (130)
T ss_pred CCcEEEEEEEecCC-------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeE-EE
Confidence 56788888887642 799999853 46899999999999999999999999999999876555 66
Q ss_pred EEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232 114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~ 159 (163)
.+... ......++|.+...... ..+..+..+++|+++++..
T Consensus 77 ~~~~~----~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 77 VYSVP----HISQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEecC----CceEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCC
Confidence 55432 12345677887775432 2334455789999998874
No 40
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=7.9e-19 Score=122.91 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=66.6
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP 143 (163)
Q Consensus 64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 143 (163)
++||+++.. +.|.+|||++++|||+.+||.||++||||+.+..... ++.+. . . ....++|.+.........+
T Consensus 12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~--~--~--~~~~~~f~~~~~~~~~~~~ 83 (112)
T cd04667 12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLY-LFHVD--G--G--STRHHVFVASVPPSAQPKP 83 (112)
T ss_pred EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEE-EEEEe--C--C--CEEEEEEEEEcCCcCCCCC
Confidence 799998865 8899999999999999999999999999999765555 44432 1 1 1234567776554333344
Q ss_pred cCcceeEEEEecCCCcc
Q 031232 144 EKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 144 ~~e~~~~~W~~~~e~~~ 160 (163)
..+..+++|++++++..
T Consensus 84 ~~e~~~~~W~~~~el~~ 100 (112)
T cd04667 84 SNEIADCRWLSLDALGD 100 (112)
T ss_pred chheeEEEEecHHHhhh
Confidence 55568899999998764
No 41
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.79 E-value=7.5e-19 Score=130.46 Aligned_cols=110 Identities=20% Similarity=0.077 Sum_probs=75.1
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLG 113 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~~l~ 113 (163)
.++.+|++... ++..+|||++|.. .|.|.+|||++++| ||+++||+||++||||+++..... ++
T Consensus 2 ~~av~v~l~~~---------~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~ 71 (157)
T cd03426 2 RAAVLVLLVER---------EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LG 71 (157)
T ss_pred ceEEEEEEEeC---------CCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EE
Confidence 34556666654 3457899999875 37899999999999 999999999999999999876665 65
Q ss_pred EEEEeeCCCCceEEEEEEEEEeccccCCCC-cCcceeEEEEecCCCccC
Q 031232 114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~ 161 (163)
.+........ ...++|.+.........+ ..+..+++|++++++...
T Consensus 72 ~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 72 RLPPYYTRSG--FVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred ECCCccccCC--CEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 5432222222 233445555443212222 234578999999987654
No 42
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.78 E-value=2.3e-18 Score=126.27 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=75.6
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE-
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW- 115 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~- 115 (163)
++.+|++|+++.+ ++|||++|... +.|.+|||++++||++.+||.||++||||+++..... ++..
T Consensus 2 ~~~~v~~ii~~~~------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~-l~~~~ 68 (147)
T cd03671 2 YRPNVGVVLFNED------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI-IAEIP 68 (147)
T ss_pred CCceEEEEEEeCC------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEcC
Confidence 3678888888642 47999999876 5999999999999999999999999999999765554 4432
Q ss_pred ---EEeeCCC---------CceEEEEEEEEEecc---ccCCCC--cCcceeEEEEecCCCccC
Q 031232 116 ---NFKSRAH---------NTDYQGYMFPLLVQD---QLAEWP--EKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 116 ---~~~~~~~---------~~~~~~~~f~~~~~~---~~~~~~--~~e~~~~~W~~~~e~~~~ 161 (163)
.|..... ......++|.+.+.. .....+ +.+..+++|++++++...
T Consensus 69 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~ 131 (147)
T cd03671 69 DWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL 131 (147)
T ss_pred CeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence 2221110 011233455555443 111222 345689999999987653
No 43
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.78 E-value=2.9e-18 Score=124.73 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=60.8
Q ss_pred EEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE-------EEeeCCCCceEEE-EE
Q 031232 64 EVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW-------NFKSRAHNTDYQG-YM 130 (163)
Q Consensus 64 ~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~-------~~~~~~~~~~~~~-~~ 130 (163)
+|||+||... |.|.+|||++++|||+++||.||++||||+++.........+ .+........+.. .+
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLI 95 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEE
Confidence 7999997643 789999999999999999999999999999875433200011 1111111112222 23
Q ss_pred EEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 131 FPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 131 f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
|.+..... ...+.++..+++|++++++..
T Consensus 96 ~~~~~~~~-~~~~~~E~~~~~w~~~~el~~ 124 (141)
T PRK15472 96 FDCVSANR-DVKINEEFQDYAWVKPEDLVH 124 (141)
T ss_pred EEeecCCC-cccCChhhheEEEccHHHhcc
Confidence 44433322 222334568999999998765
No 44
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.76 E-value=2.2e-18 Score=124.27 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=68.1
Q ss_pred ceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232 62 DLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (163)
Q Consensus 62 ~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (163)
+++|||++|+. .+.|.+|||++++|||+++||.||++||||+.+..... ++.+.+... ....++|.+......
T Consensus 11 ~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~----~~~~~~f~~~~~~~~ 85 (131)
T cd03429 11 GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRY-VGSQPWPFP----SSLMLGFTAEADSGE 85 (131)
T ss_pred CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEE-EeecCCCCC----ceEEEEEEEEEcCCc
Confidence 35899999876 47899999999999999999999999999999876666 655333221 233456666655432
Q ss_pred CCCCcCcceeEEEEecCCCcc
Q 031232 140 AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 140 ~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.....++..+++|++++++..
T Consensus 86 ~~~~~~E~~~~~w~~~~el~~ 106 (131)
T cd03429 86 IVVDDDELEDARWFSRDEVRA 106 (131)
T ss_pred ccCCchhhhccEeecHHHHhh
Confidence 222233457899999988654
No 45
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.76 E-value=3.6e-18 Score=123.37 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=69.1
Q ss_pred ceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec---eeeeEEEEeeCCC-----CceEEEEEE
Q 031232 62 DLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC---ELLGEWNFKSRAH-----NTDYQGYMF 131 (163)
Q Consensus 62 ~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~---~~l~~~~~~~~~~-----~~~~~~~~f 131 (163)
..++||+++..+ +.|.||||++++|||+.+||.||++||||+.+.... .+++.+.+..... ......++|
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 91 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFF 91 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEE
Confidence 348999998653 689999999999999999999999999999765421 1133333322211 112466788
Q ss_pred EEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 132 PLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.+....... .+..+..+++|++++++...
T Consensus 92 ~~~~~~g~~-~~~~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 92 KARYMSGQF-ELSQNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEEecCcc-ccCCCcceeEecCHHHHHhh
Confidence 887654322 23345689999999988654
No 46
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.76 E-value=2.8e-18 Score=123.81 Aligned_cols=106 Identities=21% Similarity=0.102 Sum_probs=74.0
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~ 115 (163)
..|++++++. .+++||+++++. +.|.+|||++++|||+++||+||++||||+.+..... ++.+
T Consensus 3 ~~v~v~~~~~------------~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~ 69 (137)
T cd03424 3 DAVAVLPYDD------------DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-LGSF 69 (137)
T ss_pred CEEEEEEEcC------------CCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-EeeE
Confidence 4566777764 247999987543 4799999999999999999999999999999865555 5554
Q ss_pred EEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232 116 NFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 116 ~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.+... ......++|.+...... ....+.+..+++|++++++..
T Consensus 70 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 114 (137)
T cd03424 70 YPSPG--FSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALE 114 (137)
T ss_pred ecCCc--ccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHH
Confidence 43321 12234456666655432 123344568899999988754
No 47
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.76 E-value=2.3e-17 Score=118.29 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=49.9
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEE-------cCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISS-------QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~ 106 (163)
++|+|+++.+ ++..+|||+++ +..+.|.+|||+++.||++++||+||++||||+.+.
T Consensus 2 ~~g~v~~~~~---------~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFR---------DGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEc---------CCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 6899999876 46778999985 334789999999999999999999999999999865
No 48
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.75 E-value=6.5e-18 Score=126.32 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=75.4
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELL 112 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l 112 (163)
+.+|++++++.+ ++|||++|... |.|.+| ||++++|||+++||+||++||||+.+......+
T Consensus 30 ~~~v~v~i~~~~------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~ 97 (165)
T cd02885 30 HRAFSVFLFNSK------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVL 97 (165)
T ss_pred eeEEEEEEEcCC------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhcc
Confidence 677777777642 36999987642 679885 899999999999999999999999987655512
Q ss_pred eEEEEeeCCCC---ceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 113 GEWNFKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 113 ~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
+.+.|...... .....++|.+........ ..++..+++|++++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~-~~~Ev~~~~w~~~~el~~~ 148 (165)
T cd02885 98 PRFRYRAPDDGGLVEHEIDHVFFARADVTLIP-NPDEVSEYRWVSLEDLKEL 148 (165)
T ss_pred ceEEEEEEcCCCceeeEEEEEEEEEeCCCCCC-CccceeEEEEECHHHHHHH
Confidence 44544332211 123456776665443222 3334578999999987643
No 49
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.75 E-value=2.8e-17 Score=116.87 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=70.7
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP 143 (163)
Q Consensus 64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 143 (163)
++||++++ .+.|.+|||++++||++++||.||++||||+.+..... ++.+.+.... ......+|.+.+.......+
T Consensus 12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~-l~~~~~~~~~--~~~~~~~y~a~~~~~~~~~~ 87 (118)
T cd04665 12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL-VGYYQVDLFE--SGFETLVYPAVSAQLEEKAS 87 (118)
T ss_pred EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEE-EEEEEecCCC--CcEEEEEEEEEEEecccccc
Confidence 79999887 46799999999999999999999999999999877777 7777655432 33455667776665444445
Q ss_pred cCcceeEEEEecCCC
Q 031232 144 EKNVRSRKWVCTFMP 158 (163)
Q Consensus 144 ~~e~~~~~W~~~~e~ 158 (163)
..+.....|++....
T Consensus 88 ~~E~~~~~~~~~~~~ 102 (118)
T cd04665 88 YLETDGPVLFKNEPE 102 (118)
T ss_pred cccccCcEEeccCCc
Confidence 666789999997654
No 50
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.8e-17 Score=117.71 Aligned_cols=95 Identities=19% Similarity=0.094 Sum_probs=63.7
Q ss_pred eEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232 63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 137 (163)
Q Consensus 63 ~~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 137 (163)
++|||++|.. .+.|.+|||++++|||+.+||.||++||||+.+..... ++...+...........++|.+....
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (129)
T cd04699 13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR-YPSTVTHEDSGVYNVIYLVFVCEALS 91 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee-eeEEEEEcCCCEEEEEEEEEEeeecC
Confidence 4799998864 36799999999999999999999999999999876555 33222222111123334455553332
Q ss_pred ccCCCCcCcceeEEEEecCCCc
Q 031232 138 QLAEWPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 138 ~~~~~~~~e~~~~~W~~~~e~~ 159 (163)
. ......+..+++|++++++.
T Consensus 92 ~-~~~~~~e~~~~~w~~~~el~ 112 (129)
T cd04699 92 G-AVKLSDEHEEYAWVTLEELA 112 (129)
T ss_pred C-cccCChhheEEEEecHHHhh
Confidence 2 12223345789999999863
No 51
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=8.3e-18 Score=120.08 Aligned_cols=95 Identities=20% Similarity=0.042 Sum_probs=62.8
Q ss_pred eEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeece-eeeEEEEeeCCCCceEEEEEEEEEe
Q 031232 63 LEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLV 135 (163)
Q Consensus 63 ~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~ 135 (163)
++|||++|... |.|.+| ||++++|||+ +||+||++||||+.+..... .++.+.+... .....++|.+..
T Consensus 12 g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 87 (127)
T cd04693 12 GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADV 87 (127)
T ss_pred CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecC
Confidence 47999887642 689997 9999999999 99999999999999764332 2444443322 222333444433
Q ss_pred ccccCCCCcCcceeEEEEecCCCccC
Q 031232 136 QDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 136 ~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
.........++..+++|++++++...
T Consensus 88 ~~~~~~~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04693 88 EIGKLILQKEEVDEVKFVSKDEIDGL 113 (127)
T ss_pred cccccccCHHHhhhEEEeCHHHHHHH
Confidence 22222222334578999999987654
No 52
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.6e-17 Score=121.39 Aligned_cols=114 Identities=13% Similarity=0.004 Sum_probs=74.2
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeeece-e
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECE-L 111 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~ 111 (163)
..+|.+++++.. ++++++||.+|... |.|.+ |||++++|||+++||+||++||||+.+..... .
T Consensus 2 h~~v~~~v~~~~---------~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~ 72 (144)
T cd04692 2 HRTFHCWIITKD---------EGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIP 72 (144)
T ss_pred ceEEEEEEEEcc---------CCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEE
Confidence 356667777653 34568888888653 68999 69999999999999999999999998643221 2
Q ss_pred eeEEEEeeC-CC--CceEEEEEEEEEeccc--cCCCCcCcceeEEEEecCCCccC
Q 031232 112 LGEWNFKSR-AH--NTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 112 l~~~~~~~~-~~--~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
++.+.+... .. ......++|.+..... .....+.+..+++|++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 127 (144)
T cd04692 73 LGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL 127 (144)
T ss_pred eeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHH
Confidence 555554332 11 1123345666654431 11122344589999999887543
No 53
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.4e-17 Score=119.07 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=67.3
Q ss_pred eEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232 63 LEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 136 (163)
Q Consensus 63 ~~vLLv~r~~-----~~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 136 (163)
++|||++|.. .|.|.+ |||++++||++++||+||++||||+.+..... ++.+.+.... .....++|.+...
T Consensus 12 ~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~~~~~~~~~~--~~~~~~~f~~~~~ 88 (126)
T cd04697 12 GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-LGLFYYDTDG--NRVWGKVFSCVYD 88 (126)
T ss_pred CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-eeEEEecCCC--ceEEEEEEEEEEC
Confidence 4799988753 267999 69999999999999999999999999875555 6666654332 2334456666554
Q ss_pred cccCCCCcCcceeEEEEecCCCcc
Q 031232 137 DQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 137 ~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.... ...++..+++|++++++..
T Consensus 89 ~~~~-~~~~E~~~~~w~~~~el~~ 111 (126)
T cd04697 89 GPLK-LQEEEVEEITWLSINEILQ 111 (126)
T ss_pred CCCC-CCHhHhhheEEcCHHHHHH
Confidence 3222 2233457899999998765
No 54
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.73 E-value=2.3e-17 Score=122.48 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=76.9
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~ 115 (163)
.++.+|++++++.+ ++|||+++... +.|.+|||++++|||+++||.||++||||+.+..... ++.+
T Consensus 6 ~~~~~v~~~i~~~~------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~-~~~~ 72 (156)
T PRK00714 6 GYRPNVGIILLNRQ------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEI-LAET 72 (156)
T ss_pred CCCCeEEEEEEecC------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEE-EEEc
Confidence 46788888888753 37999998764 7899999999999999999999999999999765554 4432
Q ss_pred ----EEeeCC------CCc--eEEEEEEEEEeccc-c--CC--CCcCcceeEEEEecCCCccC
Q 031232 116 ----NFKSRA------HNT--DYQGYMFPLLVQDQ-L--AE--WPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 116 ----~~~~~~------~~~--~~~~~~f~~~~~~~-~--~~--~~~~e~~~~~W~~~~e~~~~ 161 (163)
.|.... ... ....++|.+..... . .. .++.+..+++|++++++...
T Consensus 73 ~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~ 135 (156)
T PRK00714 73 RDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQ 135 (156)
T ss_pred CCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence 221110 000 11345666665321 1 11 12345689999999987654
No 55
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.73 E-value=8.4e-17 Score=111.95 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=72.5
Q ss_pred eEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232 63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA 140 (163)
Q Consensus 63 ~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 140 (163)
+++||+++.. .+.|.+|||++++||++.++|.||+.||+|+.+..... .+.+.+...........++|.+.......
T Consensus 12 ~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (123)
T cd02883 12 GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRL-LGVYEVESPDEGEHAVVFVFLARLVGGEP 90 (123)
T ss_pred CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeE-EEEEEeeccCCCceEEEEEEEEEeCCCCc
Confidence 4799999987 58999999999999999999999999999999765444 55555554433445667788777654322
Q ss_pred C-CCcCcceeEEEEecCCCcc
Q 031232 141 E-WPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 141 ~-~~~~e~~~~~W~~~~e~~~ 160 (163)
. ....+..+.+|++++++..
T Consensus 91 ~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 91 TLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred CCCCCCccceEEEEcHHHCcc
Confidence 1 2233457889999998764
No 56
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.72 E-value=5e-17 Score=134.47 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=74.2
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee--
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-- 113 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~-- 113 (163)
.++|++|+++.+ +|||++|.. .|.|.+|||++++|||+++||+||++||||+++..... .+
T Consensus 203 ~vtv~avv~~~g-------------~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l-~~~~ 268 (340)
T PRK05379 203 FVTVDAVVVQSG-------------HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVL-RGSI 268 (340)
T ss_pred ceEEEEEEEECC-------------EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccccc-ceee
Confidence 478888887642 799999875 36799999999999999999999999999998654432 22
Q ss_pred ----EEEEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232 114 ----EWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 114 ----~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.+.+...........++|.+...... .....++..+++|++++++..
T Consensus 269 ~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~ 321 (340)
T PRK05379 269 RDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLA 321 (340)
T ss_pred eeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhh
Confidence 12222211122344566666554321 122344568999999998764
No 57
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.72 E-value=3.9e-17 Score=123.98 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=81.2
Q ss_pred cccccccccccccccccCCCcccccCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCE-EecCccc
Q 031232 10 IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGM-LFPKGGW 83 (163)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W-~lPGG~v 83 (163)
.+..|+..|.++......-+.....+.-+..++.+++++ +.++|||.+|... |.| .+|||++
T Consensus 8 ~~e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~------------~~g~iLL~~R~~~~~~~pg~~~~~pGG~v 75 (180)
T PRK15393 8 STEWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHD------------GMGKILVQRRTETKDFLPGMLDATAGGVV 75 (180)
T ss_pred CceEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEEC------------CCCeEEEEEeCCCCCCCCCcccccCCCcC
Confidence 345566666666332222111222222334444444443 2357999887643 334 6899999
Q ss_pred CCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232 84 EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 84 e~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
++|||+++||.||++||||+.+..... ++.+.+... ......++|.+..... ......+..+++|++++++...
T Consensus 76 e~GEs~~eAA~REL~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T PRK15393 76 QAGEQLLESARREAEEELGIAGVPFAE-HGQFYFEDE--NCRVWGALFSCVSHGP-FALQEEEVSEVCWMTPEEITAR 149 (180)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcccee-ceeEEecCC--CceEEEEEEEEEeCCC-CCCChHHeeEEEECCHHHHhhh
Confidence 999999999999999999998655444 565544332 2223334555544322 1222334578999999988653
No 58
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.71 E-value=1.9e-16 Score=113.82 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=65.8
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL 139 (163)
Q Consensus 64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 139 (163)
+|||++|... |.|.||||++++|||+.+||.||++||||+++..... ++.+.+... ......++|.+......
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~ 92 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEY-VASHQREVS--GRRIHLHAWHVPDFHGE 92 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcccccee-EEEEEEecC--CcEEEEEEEEEEEecCc
Confidence 7999988653 6799999999999999999999999999999876555 655554433 22344556655443221
Q ss_pred CCCCcCcceeEEEEecCCCcc
Q 031232 140 AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 140 ~~~~~~e~~~~~W~~~~e~~~ 160 (163)
. ...+..+++|++++++..
T Consensus 93 ~--~~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 93 L--QAHEHQALVWCTPEEALR 111 (135)
T ss_pred c--cccccceeEEcCHHHccc
Confidence 1 122346789999998764
No 59
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.71 E-value=8.6e-17 Score=128.28 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=68.5
Q ss_pred eEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232 63 LEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA 140 (163)
Q Consensus 63 ~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 140 (163)
+++||++++.. +.|.+|||++|+|||+++||.||++||||+++..... ++...+... ....+.|.+.......
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~-~~s~~~~~p----~~lm~~f~a~~~~~~~ 217 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRY-VGSQPWPFP----HSLMLGFHADYDSGEI 217 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEE-EEeEeecCC----CeEEEEEEEEecCCcc
Confidence 47999987643 7899999999999999999999999999999877666 665443322 1344567666543322
Q ss_pred CCCcCcceeEEEEecCCCcc
Q 031232 141 EWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 141 ~~~~~e~~~~~W~~~~e~~~ 160 (163)
...+.|..+++||+++++..
T Consensus 218 ~~~~~Ei~~a~W~~~del~~ 237 (256)
T PRK00241 218 VFDPKEIADAQWFRYDELPL 237 (256)
T ss_pred cCCcccEEEEEEECHHHCcc
Confidence 22334557899999998754
No 60
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.5e-16 Score=116.58 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=63.4
Q ss_pred eEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee----ceeeeEEEEeeCC-----C-CceEE
Q 031232 63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----CELLGEWNFKSRA-----H-NTDYQ 127 (163)
Q Consensus 63 ~~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~----~~~l~~~~~~~~~-----~-~~~~~ 127 (163)
++|||++|.. .|.|.+|||++++||++++||+||++||||+.+... +. ++.+.+.... . .....
T Consensus 13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 91 (143)
T cd04694 13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQV-LGLWESVYPPLLSRGLPKRHHI 91 (143)
T ss_pred CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeE-EeeeccccccccCCCcccceeE
Confidence 4799999864 267999999999999999999999999999987653 33 5554332111 1 11222
Q ss_pred EEEEEEEeccc-----cCCCC-cCcceeEEEEecCCCccC
Q 031232 128 GYMFPLLVQDQ-----LAEWP-EKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 128 ~~~f~~~~~~~-----~~~~~-~~e~~~~~W~~~~e~~~~ 161 (163)
..+|....... ....+ ..+..+++|+++++|.++
T Consensus 92 ~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 92 VVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred EEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 22222222211 01112 235678999999988754
No 61
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.68 E-value=2.2e-16 Score=120.27 Aligned_cols=95 Identities=20% Similarity=-0.011 Sum_probs=66.5
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
++|||+++.+. ..|+||||.+|+||++++||+||++||||+.+..... ++.+........ ...++|.+.....
T Consensus 59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~-l~~~~~~~~~~~--~~~~~f~a~~~~~ 135 (185)
T PRK11762 59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTF-LKELSLAPSYFS--SKMNIVLAEDLYP 135 (185)
T ss_pred CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEecCCCccC--cEEEEEEEEcccc
Confidence 47999998654 4599999999999999999999999999999888777 776654332222 3344555543222
Q ss_pred c-CCCCcCcceeEEEEecCCCcc
Q 031232 139 L-AEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 139 ~-~~~~~~e~~~~~W~~~~e~~~ 160 (163)
. ....+.+..+..|++++++..
T Consensus 136 ~~~~~~e~E~i~~~~~~~~e~~~ 158 (185)
T PRK11762 136 ERLEGDEPEPLEVVRWPLADLDE 158 (185)
T ss_pred ccCCCCCCceeEEEEEcHHHHHH
Confidence 1 122233346889999887654
No 62
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.68 E-value=2.5e-16 Score=119.82 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=72.0
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECEL 111 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~ 111 (163)
...++++++++. +++|||++|... |.|.+| ||++++|||+++||+||++||||+++......
T Consensus 33 ~h~av~v~i~~~------------~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~ 100 (184)
T PRK03759 33 LHLAFSCYLFDA------------DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELV 100 (184)
T ss_pred eeeEEEEEEEcC------------CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccc
Confidence 356666666653 347999987532 567764 89999999999999999999999997643332
Q ss_pred eeEEEEeeCC-CCc--eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 112 LGEWNFKSRA-HNT--DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 112 l~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
++.+.+.... ... ....++|.+...... ....++..+++|++++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~-~~~~~Ev~~~~W~~~~el~~ 151 (184)
T PRK03759 101 LPDFRYRATDPNGIVENEVCPVFAARVTSAL-QPNPDEVMDYQWVDPADLLR 151 (184)
T ss_pred cceEEEEEecCCCceeeEEEEEEEEEECCCC-CCChhHeeeEEEECHHHHHH
Confidence 5555443221 111 224457777655322 22223457899999988754
No 63
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.68 E-value=9e-16 Score=117.50 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=74.2
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeecee
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECEL 111 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~~ 111 (163)
.+.+|++|++... ++.+|||++|.. .|.|+||||++|++ |++++||+||++||||+.......
T Consensus 29 ~~~aavvl~l~~~----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~- 97 (190)
T PRK10707 29 QRQAAVLIPIVRR----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV- 97 (190)
T ss_pred CCCeEEEEEEEEC----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE-
Confidence 3456667767642 335788888653 27899999999985 689999999999999999877777
Q ss_pred eeEEEEeeCCCCceEEEEEEEEEeccccCCCC-cCcceeEEEEecCCCccC
Q 031232 112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~ 161 (163)
++.+.......+ .....|.+.+.......+ ++|..++.|++++++...
T Consensus 98 lg~l~~~~~~~~--~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 98 IGVLPPVDSSTG--YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred EEEeeeeeccCC--cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence 777654333222 223334333333222223 234578999999887653
No 64
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5.6e-16 Score=112.26 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=71.9
Q ss_pred EEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCee-eeeceeeeE
Q 031232 41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGE 114 (163)
Q Consensus 41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~-~~~~~~l~~ 114 (163)
++++++++.+ ++|||+++... +.|.+|||++++||++.+||.||++||||+.+ ..... +..
T Consensus 2 ~~~~~i~~~~------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~-~~~ 68 (133)
T cd04685 2 AARVVLLDPD------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPP-VWR 68 (133)
T ss_pred eEEEEEEcCC------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccce-EEE
Confidence 5678888653 37999987642 57999999999999999999999999999997 44333 332
Q ss_pred EE--EeeCCCCceEEEEEEEEEecccc---CCC--CcC-cceeEEEEecCCCcc
Q 031232 115 WN--FKSRAHNTDYQGYMFPLLVQDQL---AEW--PEK-NVRSRKWVCTFMPVT 160 (163)
Q Consensus 115 ~~--~~~~~~~~~~~~~~f~~~~~~~~---~~~--~~~-e~~~~~W~~~~e~~~ 160 (163)
.. +...........++|.+...... ... .+. +...++|+++++...
T Consensus 69 ~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~ 122 (133)
T cd04685 69 RDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA 122 (133)
T ss_pred EEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence 22 32232233345678887765321 111 111 135789999998654
No 65
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.67 E-value=2.3e-15 Score=108.12 Aligned_cols=100 Identities=26% Similarity=0.265 Sum_probs=60.9
Q ss_pred CceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc-c
Q 031232 61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ-L 139 (163)
Q Consensus 61 ~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~ 139 (163)
+..+||+.+... +.|.||||++++|||+.+||.||++||||+.+.......+.+..... ...+..+++.+.+... .
T Consensus 12 ~~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 88 (126)
T cd04663 12 EVLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLP 88 (126)
T ss_pred ceEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCc
Confidence 346777776654 56999999999999999999999999999997332221232211110 1122333444433211 1
Q ss_pred CCC------CcCcceeEEEEecCCCccCCC
Q 031232 140 AEW------PEKNVRSRKWVCTFMPVTCFL 163 (163)
Q Consensus 140 ~~~------~~~e~~~~~W~~~~e~~~~~~ 163 (163)
..+ ++.+...+.|++++++...+|
T Consensus 89 ~~~~~~~~~~E~~~i~~~Wv~l~~~~~~~~ 118 (126)
T cd04663 89 DSWVHFVQDDGGHEFRFFWVDLASCLDEFL 118 (126)
T ss_pred ccccCcccCCCCceEEEEEEccccccccce
Confidence 111 222234566999999877654
No 66
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.67 E-value=2.2e-15 Score=106.85 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=65.4
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
++|||.+|... |.|.||||++++||++.+||.||++||||+.+..... ++.+.+.... .....++|.+.....
T Consensus 16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ 92 (129)
T PRK10776 16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL-FEKLEYEFPD--RHITLWFWLVESWEG 92 (129)
T ss_pred CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE-EEEEEeeCCC--cEEEEEEEEEEEECC
Confidence 47999998653 6899999999999999999999999999998765555 5555544332 234445565543322
Q ss_pred cCCCCcCcceeEEEEecCCCcc
Q 031232 139 LAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
. . ...+..+.+|++++++..
T Consensus 93 ~-~-~~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 93 E-P-WGKEGQPGRWVSQVALNA 112 (129)
T ss_pred c-c-CCccCCccEEecHHHCcc
Confidence 1 1 122346789999998654
No 67
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.65 E-value=9.9e-16 Score=118.31 Aligned_cols=108 Identities=19% Similarity=0.059 Sum_probs=74.2
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCCC---------CEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~---------~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~ 110 (163)
-+|++|++.. ++++|||+++.+.+ .|++|+|.+|+||+|++||+||+.||||+.+.....
T Consensus 50 ~~V~il~~~~-----------~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~ 118 (202)
T PRK10729 50 HAAVLLPFDP-----------VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP 118 (202)
T ss_pred CeEEEEEEEC-----------CCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE
Confidence 4566677753 23479999987652 389999999999999999999999999999877666
Q ss_pred eeeEEEEeeCCCCceEEEEEEEEEeccc---c--CCCCcCcceeEEEEecCCCccC
Q 031232 111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQ---L--AEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~---~--~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
++.+..... ......++|.+..... . ....+.|..++.|++++++...
T Consensus 119 -l~~~~~spg--~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~ 171 (202)
T PRK10729 119 -VLSYLASPG--GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 171 (202)
T ss_pred -EEEEEcCCC--cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence 655433222 2234556777764221 1 1222334478999999987653
No 68
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.64 E-value=2.2e-15 Score=114.72 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=41.4
Q ss_pred CCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232 60 EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104 (163)
Q Consensus 60 ~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~ 104 (163)
+...+||+++|...+.|.||||++++||++.+||.||++||||+.
T Consensus 46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 356899999998889999999999999999999999999999765
No 69
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.64 E-value=6e-15 Score=103.39 Aligned_cols=93 Identities=19% Similarity=0.128 Sum_probs=67.9
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
+++||++|... |.|.||||+++++|++++||.||++||||+.+..... ++.+.+... ......++|.+.....
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 89 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGEL-LATVEHDYP--DKRVTLHVFLVELWSG 89 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce-EEEEEeeCC--CCeEEEEEEEEeeeCC
Confidence 47999988643 6899999999999999999999999999999776555 665554433 2344556676654432
Q ss_pred cCCCCcCcceeEEEEecCCCcc
Q 031232 139 LAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.. ...+.....|++++++..
T Consensus 90 ~~--~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 90 EP--QLLEHQELRWVPPEELDD 109 (124)
T ss_pred Cc--ccccCceEEEeeHHHccc
Confidence 21 123356899999998754
No 70
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.64 E-value=1.1e-15 Score=116.65 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=75.0
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---------CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---------~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~ 109 (163)
..+|++|++.. ++.+|||+++.+. ..|+||||++++||++++||+||++||||+.+....
T Consensus 44 ~~~v~vl~~~~-----------~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~ 112 (185)
T TIGR00052 44 GNAAAVLLYDP-----------KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR 112 (185)
T ss_pred CCeEEEEEEEC-----------CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE
Confidence 34566666643 3457999997542 358899999999999999999999999999987666
Q ss_pred eeeeEEEEeeCCCCceEEEEEEEEEecccc----CCCCcCcceeEEEEecCCCccC
Q 031232 110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQL----AEWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~e~~~~~W~~~~e~~~~ 161 (163)
. ++.+.... .......++|.+.+.... ....+.+..+..|++++++...
T Consensus 113 ~-~~~~~~~~--g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~ 165 (185)
T TIGR00052 113 K-LLSFYSSP--GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW 165 (185)
T ss_pred E-EEEEEcCC--CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence 6 65543222 223456677877755321 1122334478999999877543
No 71
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=9.9e-15 Score=103.67 Aligned_cols=93 Identities=17% Similarity=0.064 Sum_probs=65.8
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
+++||.+|... |.|.||||++++|||+++||.||+.||||+.+..... ++.+.+... ......++|.+...+.
T Consensus 16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~-~~~~~h~~~--~~~~~~~~~~~~~~~~ 92 (128)
T TIGR00586 16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF-EKLEYEFYP--RHITLWFWLLERWEGG 92 (128)
T ss_pred CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEEEECC--CcEEEEEEEEEEEcCC
Confidence 47998888653 6899999999999999999999999999999776555 555544332 2345566666655432
Q ss_pred cCCCCcCcceeEEEEecCCCcc
Q 031232 139 LAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
... ..+..+.+|+++++...
T Consensus 93 ~~~--~~~~~~~~W~~~~~l~~ 112 (128)
T TIGR00586 93 PPG--KEGQPEEWWVLVGLLAD 112 (128)
T ss_pred CcC--cccccccEEeCHHHCCc
Confidence 111 12235789999887654
No 72
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=7e-15 Score=104.54 Aligned_cols=106 Identities=20% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~ 113 (163)
+|..++++|+...+ ++||++|+.. +.|.||||++++|||+++||.||++||||+.+.... +.
T Consensus 2 ~p~~~av~vl~~~~-------------~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~--l~ 66 (118)
T cd04674 2 NPLPVVVALLPVDD-------------GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPAD--IR 66 (118)
T ss_pred CCcEEEEEEEEECC-------------CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccE--EE
Confidence 34556666655432 3677776542 789999999999999999999999999999976322 22
Q ss_pred EEEEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCC
Q 031232 114 EWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMP 158 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~ 158 (163)
.+..... .......+.|........ ...++.+..++.|+.+...
T Consensus 67 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 112 (118)
T cd04674 67 LFDVRSA-PDGTLLVFGLLPERRAADLPPFEPTDETTERAVVTAPSE 112 (118)
T ss_pred EEEEEec-CCCeEEEEEEEeccccccCCCCCCCcceeeEEEccCCcc
Confidence 2222111 122344445554433322 2234444566667665443
No 73
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.64 E-value=4.1e-15 Score=110.37 Aligned_cols=89 Identities=24% Similarity=0.267 Sum_probs=65.7
Q ss_pred EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232 64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP 143 (163)
Q Consensus 64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 143 (163)
++||+++... .|.+|||++++|||+++||.||++||||+.+..... ++.+...... .....++|.+.+... ...
T Consensus 36 ~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~-lg~~~~~~~~--~~~~~~vf~A~~~~~-~~~- 109 (156)
T TIGR02705 36 QWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY-IGQYEVEGES--TDFVKDVYFAEVSAL-ESK- 109 (156)
T ss_pred EEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEE-EEEEEecCCC--cEEEEEEEEEEEecc-ccC-
Confidence 6999988754 599999999999999999999999999999888777 8877654332 445667777766633 222
Q ss_pred cCcceeEE-EEecCCCc
Q 031232 144 EKNVRSRK-WVCTFMPV 159 (163)
Q Consensus 144 ~~e~~~~~-W~~~~e~~ 159 (163)
.+..+.. +++++++.
T Consensus 110 -~e~~E~~~~~~~~~~~ 125 (156)
T TIGR02705 110 -DDYLETKGPVLLQEIP 125 (156)
T ss_pred -CCceeeEeEEEHHHHH
Confidence 3334555 67776654
No 74
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.63 E-value=2.8e-15 Score=113.47 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=67.2
Q ss_pred ceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeeeeece--eeeEEEEeeC-CCC--ceEEEEE
Q 031232 62 DLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECE--LLGEWNFKSR-AHN--TDYQGYM 130 (163)
Q Consensus 62 ~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~--~l~~~~~~~~-~~~--~~~~~~~ 130 (163)
.+++++.||... |.| .+|||++++|||+.+||+||++|||||....... .++.+.+... ... .....++
T Consensus 47 ~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~ 126 (180)
T cd03676 47 GLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYV 126 (180)
T ss_pred CeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEE
Confidence 467888887653 789 5899999999999999999999999998664321 1444443332 122 2345567
Q ss_pred EEEEeccccCCCC-cCcceeEEEEecCCCccC
Q 031232 131 FPLLVQDQLAEWP-EKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 131 f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~ 161 (163)
|.+.+.......+ +.|..++.|++++++...
T Consensus 127 f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 127 YDLELPPDFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred EEEEcCCCCeeCCCCCcEeEEEEECHHHHHHH
Confidence 7666543222222 334588999999987643
No 75
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.60 E-value=1.1e-14 Score=108.21 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=70.8
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeece-
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE- 110 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~- 110 (163)
...++++++++. .++|||.+|... |.|.+| ||+++.|| .+||+||++|||||.+.....
T Consensus 26 ~h~~v~v~v~~~------------~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~ 91 (158)
T TIGR02150 26 LHRAFSVFLFNE------------EGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLT 91 (158)
T ss_pred eEEEEEEEEEcC------------CCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceE
Confidence 345566666643 347999887653 789986 89999999 499999999999999765431
Q ss_pred eeeEEEEeeCC-CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 111 LLGEWNFKSRA-HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 111 ~l~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.++.+.+.... .+.....++|.+...... .....+..+++|++++++..
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~-~~~~~Ev~~~~W~~~~el~~ 141 (158)
T TIGR02150 92 VLPRFSYRARDAWGEHELCPVFFARAPVPL-NPNPEEVAEYRWVSLEELKE 141 (158)
T ss_pred EcceEEEEEecCCCcEEEEEEEEEecCCcc-cCChhHeeeEEEeCHHHHHH
Confidence 14444443322 123455577776654322 22233568999999987643
No 76
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.56 E-value=2.4e-14 Score=109.72 Aligned_cols=107 Identities=15% Similarity=-0.049 Sum_probs=72.1
Q ss_pred EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCC----------EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232 40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKG----------MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (163)
Q Consensus 40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~----------W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~ 109 (163)
-+|++|++.. +..+|||+++.+.+. |++|+|.+|+| +|++||+||++||||+.+....
T Consensus 46 ~~v~Vl~~~~-----------~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~ 113 (191)
T PRK15009 46 NGATILLYNA-----------KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR 113 (191)
T ss_pred CEEEEEEEEC-----------CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE
Confidence 4566666653 345799999876532 89999999976 6999999999999999987777
Q ss_pred eeeeEEEEeeCCCCceEEEEEEEEEeccc--cC--CCCcCcceeEEEEecCCCccC
Q 031232 110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQ--LA--EWPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~e~~~~~W~~~~e~~~~ 161 (163)
. ++.+. ...+.. ....++|.+..... .. ...+.|..++.|++++++...
T Consensus 114 ~-l~~~~-~spG~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~ 166 (191)
T PRK15009 114 K-LFELY-MSPGGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM 166 (191)
T ss_pred E-eeEEE-cCCccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence 6 66543 222222 23456666664321 11 122344578999999987654
No 77
>PLN02709 nudix hydrolase
Probab=99.52 E-value=1.1e-13 Score=107.85 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=75.4
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeece
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECE 110 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~ 110 (163)
..+.++.+|++...++++ +++.+|||++|... |.|+||||++|++ +++.+||+||+.||+||.......
T Consensus 30 ~~r~AAVLv~l~~~~~~~-----~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~v 104 (222)
T PLN02709 30 PAKSSAVLVCLYQEQRED-----KNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTI 104 (222)
T ss_pred CCCccEEEEEEeeccCCC-----CCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEE
Confidence 345666666665420000 24568999998753 8899999999996 579999999999999998776666
Q ss_pred eeeEEEEeeCCCCceEEEEEEEEEecc--ccCCCCc-CcceeEEEEecCCCc
Q 031232 111 LLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPE-KNVRSRKWVCTFMPV 159 (163)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~-~e~~~~~W~~~~e~~ 159 (163)
+|.........+ +.++-|.+.+.. .....+. .|..++.|++++...
T Consensus 105 -lg~L~~~~t~sg--~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll 153 (222)
T PLN02709 105 -ISVLEPFVNKKG--MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFL 153 (222)
T ss_pred -eeecCCeECCCC--CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHh
Confidence 666544333222 344556555542 1121222 356889999987654
No 78
>PRK08999 hypothetical protein; Provisional
Probab=99.48 E-value=5.5e-13 Score=108.78 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=65.6
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
++|||.+|... |.|.||||++++||++.+||.||++||||+.+..... ++.+.+.... .....++|.+.....
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~~~~h~~~~--~~~~i~~y~~~~~~~ 93 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LITVRHDYPD--KRVRLDVRRVTAWQG 93 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EEEEEEEcCC--CeEEEEEEEEEEecC
Confidence 37999988653 6899999999999999999999999999999776555 5555444332 234556666544322
Q ss_pred cCCCCcCcceeEEEEecCCCcc
Q 031232 139 LAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.. ...+..+++|+++++...
T Consensus 94 ~~--~~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 94 EP--HGREGQPLAWVAPDELAV 113 (312)
T ss_pred cc--cCccCCccEEecHHHccc
Confidence 11 122346789999887654
No 79
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.48 E-value=4.9e-13 Score=94.90 Aligned_cols=98 Identities=24% Similarity=0.177 Sum_probs=62.7
Q ss_pred eEEEEEEEcCCC-CEEecCcccCCCCCHHH-HHHHHHHHHhCCeeee--eceeeeEEEEeeCCCC---ceEEEEEEEEEe
Q 031232 63 LEVLVISSQKGK-GMLFPKGGWEIDESIQE-AALRETIEEAGVTGIV--ECELLGEWNFKSRAHN---TDYQGYMFPLLV 135 (163)
Q Consensus 63 ~~vLLv~r~~~~-~W~lPGG~ve~gEs~~e-aA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~---~~~~~~~f~~~~ 135 (163)
.++|+.+++..+ .|.+|||++++||++.+ ||+||++||||+.+.. ... ++.+........ ......++....
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL-LGEFPPSPGDGSSVGGREHRVFFVAEV 102 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeeccee-eeeccCcccCcccccceEEEEEEeeec
Confidence 579999988876 99999999999999888 9999999999999873 334 555443322221 112222222221
Q ss_pred cc--ccCCCC----cCcceeEEEEecCCCccC
Q 031232 136 QD--QLAEWP----EKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 136 ~~--~~~~~~----~~e~~~~~W~~~~e~~~~ 161 (163)
.. ...... ..+.....|+++++....
T Consensus 103 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 134 (161)
T COG0494 103 DDSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134 (161)
T ss_pred cccccccccccCCCcchhhceeeeeHHHcccc
Confidence 11 111111 134578999998876554
No 80
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.45 E-value=1e-13 Score=110.64 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=66.7
Q ss_pred EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCC
Q 031232 64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 141 (163)
Q Consensus 64 ~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 141 (163)
++||.++.++ |.+++-.|+||+|||+++|+.||++||+||++...+. ++.-.+..+.+ .+ .-|.+........
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY-~~SQPWPfP~S---LM-igf~aey~sgeI~ 230 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRY-VGSQPWPFPHS---LM-LGFMAEYDSGEIT 230 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeE-EeccCCCCchh---hh-hhheeeecccccc
Confidence 3888887654 8899999999999999999999999999999988777 65544443321 22 2333443333223
Q ss_pred CCcCcceeEEEEecCCCccC
Q 031232 142 WPEKNVRSRKWVCTFMPVTC 161 (163)
Q Consensus 142 ~~~~e~~~~~W~~~~e~~~~ 161 (163)
..+.|..+++||+.+|++..
T Consensus 231 ~d~~Eleda~WFs~~evl~~ 250 (279)
T COG2816 231 PDEGELEDARWFSRDEVLPA 250 (279)
T ss_pred CCcchhhhccccCHhHHhhh
Confidence 33346689999999996554
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.36 E-value=6.7e-12 Score=101.58 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=38.7
Q ss_pred CceEEEEEEEcCC--C--CEEecCcccCC-CCCHHHHHHHHHHHHhCCeee
Q 031232 61 EDLEVLVISSQKG--K--GMLFPKGGWEI-DESIQEAALRETIEEAGVTGI 106 (163)
Q Consensus 61 ~~~~vLLv~r~~~--~--~W~lPGG~ve~-gEs~~eaA~REl~EEtGl~~~ 106 (163)
++.+|||+++.+. + .|+||||.+|+ +|++++||+||++||||+.+.
T Consensus 141 ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 141 GETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred CCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 4456899988763 3 48999999998 589999999999999999854
No 82
>PLN02791 Nudix hydrolase homolog
Probab=99.21 E-value=7.6e-11 Score=105.81 Aligned_cols=134 Identities=18% Similarity=0.118 Sum_probs=81.2
Q ss_pred cccccccccccccccCCCccccc---CCC-CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEe-cCc
Q 031232 12 SLVTPENVVGNLVSRTGRHLQRY---QKG-RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKG 81 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~---~~~-~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PGG 81 (163)
+.|+..+..+ ..+|....+. ..+ ...++.+.+|+. +++++||.+|.. +|.|.+ |||
T Consensus 4 E~~DI~De~g---~~~G~~~~R~evH~~Gl~HrAvhVwIfn~-----------~~gelLLQkRS~~K~~~PG~WDiS~gG 69 (770)
T PLN02791 4 EHLDVLTAAG---EKTGVSKPRGEVHRDGDYHRAVHVWIYSE-----------STQELLLQRRADCKDSWPGQWDISSAG 69 (770)
T ss_pred eEEEEECCCC---CCCCccccHHhhccCCCceEEEEEEEEEC-----------CCCeEEEEEecCCCCCCCCcccCcCCC
Confidence 4566666666 5566643333 233 345555666653 235788888765 278999 799
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCeeeeec-eeeeEEEEeeC--C--CCceEEEEEEEEEecccc---CC-CCcCcceeEEE
Q 031232 82 GWEIDESIQEAALRETIEEAGVTGIVEC-ELLGEWNFKSR--A--HNTDYQGYMFPLLVQDQL---AE-WPEKNVRSRKW 152 (163)
Q Consensus 82 ~ve~gEs~~eaA~REl~EEtGl~~~~~~-~~l~~~~~~~~--~--~~~~~~~~~f~~~~~~~~---~~-~~~~e~~~~~W 152 (163)
|++.|||+++||+||++||+||.+.... ..++.+.+... . .......++|.+...... .. ..+.|..+++|
T Consensus 70 Hv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~w 149 (770)
T PLN02791 70 HISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKY 149 (770)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEE
Confidence 9999999999999999999999854322 11454432211 1 112234455555322111 11 12345689999
Q ss_pred EecCCCc
Q 031232 153 VCTFMPV 159 (163)
Q Consensus 153 ~~~~e~~ 159 (163)
+++++..
T Consensus 150 vsl~El~ 156 (770)
T PLN02791 150 MSIEEYK 156 (770)
T ss_pred EcHHHHH
Confidence 9998765
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.17 E-value=2.9e-10 Score=90.22 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=63.5
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCC----C-------------CHHHHH
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEID----E-------------SIQEAA 93 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~g----E-------------s~~eaA 93 (163)
-...++.+++|+. .+++||.||... |.|... +|++..| | +..+||
T Consensus 54 l~Hra~~v~i~n~------------~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA 121 (247)
T PLN02552 54 LLHRAFSVFLFNS------------KYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA 121 (247)
T ss_pred ceEEEEEEEEEcC------------CCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence 4456777777754 247888888654 579553 4544433 2 167999
Q ss_pred HHHHHHHhCCeeee-----eceeeeEEEEeeCCC------C---ceEEEEEEEEEeccccCCCC-cCcceeEEEEecCCC
Q 031232 94 LRETIEEAGVTGIV-----ECELLGEWNFKSRAH------N---TDYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMP 158 (163)
Q Consensus 94 ~REl~EEtGl~~~~-----~~~~l~~~~~~~~~~------~---~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~ 158 (163)
+||++||+||.... ... ++.+.+..... . .....++|...........+ .+|..+++|+++++.
T Consensus 122 ~REL~EElGI~~~~~~~~~l~~-~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el 200 (247)
T PLN02552 122 QRKLLHELGIPAEDVPVDQFTF-LTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREEL 200 (247)
T ss_pred HhHHHHHhCCCcccccccccee-eeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHH
Confidence 99999999998542 233 55555544322 1 12222223222221112222 334589999999876
Q ss_pred cc
Q 031232 159 VT 160 (163)
Q Consensus 159 ~~ 160 (163)
..
T Consensus 201 ~~ 202 (247)
T PLN02552 201 KE 202 (247)
T ss_pred HH
Confidence 54
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.16 E-value=4.8e-11 Score=96.16 Aligned_cols=65 Identities=26% Similarity=0.144 Sum_probs=49.1
Q ss_pred cCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232 34 YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (163)
Q Consensus 34 ~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~ 110 (163)
|......++.+|+-++ ..+.||.++++. |.|..++|++|+|||++|||+||++||||+++.....
T Consensus 183 yPr~dPvVIm~li~~d------------~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~ 249 (345)
T KOG3084|consen 183 YPRTDPVVIMLLIDHD------------GKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISY 249 (345)
T ss_pred ccCCCCeEEEEEEcCC------------CCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEee
Confidence 3334456666655543 235677665543 7899999999999999999999999999999887554
No 85
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.10 E-value=2e-10 Score=81.45 Aligned_cols=69 Identities=26% Similarity=0.266 Sum_probs=55.6
Q ss_pred CeEEEEEEEEEeecCcccccccCCceEEEEEEEc-------CCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232 38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110 (163)
Q Consensus 38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~-------~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~ 110 (163)
|..++|+++++.. .+...|||++.. +.|.|++|.|-...||.+..||+||.-||+||.++--..
T Consensus 2 pK~SAGvLlYR~~---------aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~ 72 (161)
T COG4119 2 PKLSAGVLLYRAR---------AGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI 72 (161)
T ss_pred CcccceeEEEEec---------CCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence 5688999999986 466788998753 347899999999999999999999999999998753322
Q ss_pred eeeEE
Q 031232 111 LLGEW 115 (163)
Q Consensus 111 ~l~~~ 115 (163)
.+|.+
T Consensus 73 ~lG~~ 77 (161)
T COG4119 73 DLGSL 77 (161)
T ss_pred hhhhh
Confidence 25543
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.03 E-value=5.5e-09 Score=79.30 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=42.3
Q ss_pred CCceEEEEEEEcCC--CC--EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232 60 EEDLEVLVISSQKG--KG--MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109 (163)
Q Consensus 60 ~~~~~vLLv~r~~~--~~--W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~ 109 (163)
+++..++|+++.+. |. .+||+|-|+.||+++.||+||++||||+......
T Consensus 85 dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~ 138 (225)
T KOG3041|consen 85 DGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM 138 (225)
T ss_pred CCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee
Confidence 36678999998765 55 5679999999999999999999999999965544
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.94 E-value=2.6e-09 Score=83.07 Aligned_cols=112 Identities=22% Similarity=0.149 Sum_probs=67.3
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeeceee
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELL 112 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~~l 112 (163)
+-++.+|++.... .++.+|||.+|... |.-+||||+.++. +|-..||.||..||.|+....... +
T Consensus 42 ~~~aVlI~L~~~~--------~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~-~ 112 (246)
T KOG3069|consen 42 RKAAVLIPLVQVG--------SGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDV-L 112 (246)
T ss_pred CCccEEEEEEEcC--------CCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhh-h
Confidence 4555666665431 35678999988653 7899999999984 578889999999999999765444 4
Q ss_pred eEEEEeeCCCC-ceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCc
Q 031232 113 GEWNFKSRAHN-TDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 113 ~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~ 159 (163)
|.......... ...-...|.....-.... ....|..++.|+++++.+
T Consensus 113 g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll 161 (246)
T KOG3069|consen 113 GALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLL 161 (246)
T ss_pred hhccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHh
Confidence 44321111111 111112222221100111 122345789999988755
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=8.6e-10 Score=88.69 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~ 111 (163)
..++.+++.+++.+ .+||+++.... |.|.+|+|.|+++|++.++|+||++||||++......
T Consensus 113 sh~vgvg~~V~n~~------------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV- 179 (295)
T KOG0648|consen 113 SHRVGVGAFVLNKK------------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV- 179 (295)
T ss_pred hhheeeeeeEecCC------------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhH-
Confidence 44677777777642 57999986543 7899999999999999999999999999997554443
Q ss_pred eeEEEEeeCCCCceEEEEEEEEEecc--ccCCCCcCcceeEEEEecCCCcc
Q 031232 112 LGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
+..-+.............||.+.... ........++..++|+++.+-+.
T Consensus 180 la~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~ 230 (295)
T KOG0648|consen 180 LAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVS 230 (295)
T ss_pred HHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhc
Confidence 21111111110101223445554432 12233444556679999886544
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.73 E-value=1.8e-07 Score=64.94 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=57.0
Q ss_pred eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232 63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ 138 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 138 (163)
+++||.||... |.|+||+|.++.+|+.+++..|++.++.++ .... ++.+.+..+ .......+|.+.....
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~H~ft--h~~~~~~~~~~~~~~~ 87 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEP-LGTVKHTFT--HFRLTLHVYLARLEGD 87 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cccc-ceeEEEecC--CeEEEEEEEEEEEeCC
Confidence 36888888654 689999999999999999999999998765 1122 333333332 2234556676655432
Q ss_pred cCCCCcCcceeEEEEecCCCc
Q 031232 139 LAEWPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 139 ~~~~~~~e~~~~~W~~~~e~~ 159 (163)
. .+..+.+|+++++..
T Consensus 88 ~-----~~~~~~~W~~~eel~ 103 (118)
T cd03431 88 L-----LAPDEGRWVPLEELD 103 (118)
T ss_pred C-----cCccccEEccHHHHh
Confidence 1 123467999987654
No 90
>PLN02839 nudix hydrolase
Probab=98.60 E-value=2.8e-07 Score=76.55 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=68.6
Q ss_pred CceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeee---eeceeeeEEEEeeCCCC--ceEEEE
Q 031232 61 EDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHN--TDYQGY 129 (163)
Q Consensus 61 ~~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~---~~~~~l~~~~~~~~~~~--~~~~~~ 129 (163)
++.++.+-||... |.| .+.+|.+..||++.++++||+.||+||... .... .|.+.|...... .....+
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~-~G~VsY~~~~~~g~~~evly 294 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA-VGAVSYMDIDQYCFKRDVLF 294 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE-eEEEEEEEEcCCccccCEEE
Confidence 4456666655432 677 458999999999999999999999999743 2233 777776643322 234566
Q ss_pred EEEEEeccccCCCCcC-cceeEEEEecCCCcc
Q 031232 130 MFPLLVQDQLAEWPEK-NVRSRKWVCTFMPVT 160 (163)
Q Consensus 130 ~f~~~~~~~~~~~~~~-e~~~~~W~~~~e~~~ 160 (163)
+|.+.+.....+.+.+ |..++.+++++|+..
T Consensus 295 ~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~ 326 (372)
T PLN02839 295 CYDLELPQDFVPKNQDGEVESFKLIPVAQVAN 326 (372)
T ss_pred EeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence 7888877655444444 457899999888753
No 91
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.39 E-value=4.6e-07 Score=70.06 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=49.2
Q ss_pred CCeEEEEEEEEEeec--Ccc-cccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHh
Q 031232 37 GRRQVVGCIPYRYKC--VKQ-SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA 101 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~--~~~-~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEt 101 (163)
+|..+++-|+-+-+- +++ -++-...-.+++.|+|...+.|.+|||.+++||.+-.+.+||+.||.
T Consensus 110 GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 110 GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 777888877776531 111 01111223678899999999999999999999999999999999995
No 92
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.27 E-value=1.4e-06 Score=65.23 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=74.3
Q ss_pred eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeee--ece
Q 031232 39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--ECE 110 (163)
Q Consensus 39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~ 110 (163)
..+..+.+|+.+ +++||.||... +.|.= .-||--+|||...||+|-+.+|.||+... ...
T Consensus 33 HrAFS~~lFne~------------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~ 100 (185)
T COG1443 33 HRAFSSFLFNER------------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE 100 (185)
T ss_pred HhhhheeEECCC------------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence 577788888754 45777666432 45632 45676699999999999999999999762 223
Q ss_pred eeeEEEEeeCCCCc---eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccCC
Q 031232 111 LLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCF 162 (163)
Q Consensus 111 ~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~ 162 (163)
++..|.|.....+. .-+.++|.+.........| +|..+++|+++++....+
T Consensus 101 il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~np-dEV~~~~wv~~e~l~~~~ 154 (185)
T COG1443 101 ILPRFRYRAADPDGIVENEICPVLAARLDSALDPNP-DEVMDYRWVSPEDLKEMV 154 (185)
T ss_pred cccceEEeccCCCCcceeeeeeEEEEeecCCCCCCh-HHhhheeccCHHHHHHhh
Confidence 36667776665443 3344556666555434333 346899999998765543
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.90 E-value=0.00011 Score=51.16 Aligned_cols=91 Identities=14% Similarity=0.021 Sum_probs=53.1
Q ss_pred ceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232 62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 137 (163)
Q Consensus 62 ~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 137 (163)
++++||.||... |.|+||.--.+. ++..+.+.+.+.+..|+.+..... ++.+.+..+. ......+|.+.+..
T Consensus 8 ~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~H~fSH--~~~~~~~~~~~~~~ 83 (114)
T PF14815_consen 8 QGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEP-LGTVKHVFSH--RRWTIHVYEVEVSA 83 (114)
T ss_dssp TSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SS--EEEEEEEEEEEEE-
T ss_pred CCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhee-cCcEEEEccc--eEEEEEEEEEEecC
Confidence 357999988774 789999977774 334566666677888988777665 7776665543 35667778777665
Q ss_pred ccCCCCcCcceeEEEEecCCCcc
Q 031232 138 QLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 138 ~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.... .....+|+++++...
T Consensus 84 ~~~~----~~~~~~W~~~~~l~~ 102 (114)
T PF14815_consen 84 DPPA----EPEEGQWVSLEELDQ 102 (114)
T ss_dssp SS--------TTEEEEEGGGGGG
T ss_pred CCCC----CCCCcEEEEHHHHhh
Confidence 4222 235899999988643
No 94
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.60 E-value=0.0002 Score=54.52 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=46.1
Q ss_pred cccCC-CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232 32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104 (163)
Q Consensus 32 ~~~~~-~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~ 104 (163)
..|++ +-|.+|.+|++... -+--+|||+|.. ...|.||||.+.+||+..++..|.+.+-.|..
T Consensus 35 ~~y~~~GmRrsVe~Vllvh~---------h~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 35 ENYEKEGMRRSVEGVLLVHE---------HGHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp HHHHHHSSEEEEEEEEEEEE---------TTEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred HHHHHhCCceEEEEEEEEec---------CCCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 35554 77888888877654 466789999964 35899999999999999999999999998876
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.50 E-value=3.5e-05 Score=62.91 Aligned_cols=59 Identities=31% Similarity=0.383 Sum_probs=49.5
Q ss_pred CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee
Q 031232 37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (163)
Q Consensus 37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~ 106 (163)
.+..+.|++++... .-++||++......|.+|-|++..+|+-..||+||+.||||.+..
T Consensus 80 ~~iPv~ga~ild~~-----------~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 80 ARIPVRGAIILDEK-----------RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CCCCCchHhhhhhh-----------hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence 44566778888653 346899988777779999999999999999999999999999865
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.42 E-value=0.0011 Score=49.28 Aligned_cols=95 Identities=23% Similarity=0.098 Sum_probs=59.2
Q ss_pred EEEEEEEcCC-------CCEEe-cCcccCCCC---CHHHH----HHHHHHHHhCCee---eeeceeeeEEEEeeCCCCce
Q 031232 64 EVLVISSQKG-------KGMLF-PKGGWEIDE---SIQEA----ALRETIEEAGVTG---IVECELLGEWNFKSRAHNTD 125 (163)
Q Consensus 64 ~vLLv~r~~~-------~~W~l-PGG~ve~gE---s~~ea----A~REl~EEtGl~~---~~~~~~l~~~~~~~~~~~~~ 125 (163)
+||+..|..+ +.+++ -|||+..++ |.++. +.||+.||.++.- ..... +|-+......-+..
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-lGlINdd~neVgkV 151 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-LGLINDDTNEVGKV 151 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-eeeecCCCcccceE
Confidence 7999888643 56777 699997653 33333 6799999999983 33333 55443332223345
Q ss_pred EEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232 126 YQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV 159 (163)
Q Consensus 126 ~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~ 159 (163)
++..+|............+.+..+.+|+...+.-
T Consensus 152 HiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele 185 (203)
T COG4112 152 HIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELE 185 (203)
T ss_pred EEEEEEEeeccccceeeeecceeeeeeeeHHHHH
Confidence 6777787765542222233445788999877653
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.05 E-value=0.0023 Score=51.96 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=48.5
Q ss_pred EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA 140 (163)
Q Consensus 76 W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 140 (163)
.+|-+|.|+..-||.+-|..|+.||.|.++....+ +..+.|.........-.+.|.+.+.+..+
T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l-~hv~~~~~g~~~s~sa~~l~y~ei~es~k 144 (405)
T KOG4432|consen 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDL-IHVITFVVGAHQSGSAQHLYYAEIDESMK 144 (405)
T ss_pred eeeeccccccccCHHHHhHHHHHHHhCCcCChhHc-eEEEEEEeccccCccchheeeeecchhhc
Confidence 45679999999999999999999999999988777 77777765544433344566666665433
No 98
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.34 E-value=0.0038 Score=46.81 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=44.1
Q ss_pred ccCC-CCeEEEEEE-EEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhC
Q 031232 33 RYQK-GRRQVVGCI-PYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102 (163)
Q Consensus 33 ~~~~-~~~~~v~~i-i~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtG 102 (163)
.|.+ +-|.+|-+| ++... .--+|||+|-. ...+.+|||.+++||+-.+...|-+-|-.|
T Consensus 62 ey~k~gmRrsvegvlivheH----------~lPHvLLLQig-~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 62 EYMKEGMRRSVEGVLIVHEH----------NLPHVLLLQIG-NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred HHHhhhhhheeeeeEEEeec----------CCCeEEEEeeC-CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 3443 445555554 55443 44679998763 357899999999999999999999999999
No 99
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.039 Score=43.89 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=63.3
Q ss_pred CceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeeeeec--eeeeEEEEeeCCCC---ceEEEE
Q 031232 61 EDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKSRAHN---TDYQGY 129 (163)
Q Consensus 61 ~~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~---~~~~~~ 129 (163)
+..++-+-+|... +.| .+.+|.+.-|-...++|++|..||+.+...... .+.|+.+|..-... ..-..+
T Consensus 146 ~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qY 225 (306)
T KOG4313|consen 146 GPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQY 225 (306)
T ss_pred CceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceE
Confidence 3355666655442 344 457999999999999999999999999863322 23566665532211 234567
Q ss_pred EEEEEeccccCCCCcCcc-eeEEEEecCCCc
Q 031232 130 MFPLLVQDQLAEWPEKNV-RSRKWVCTFMPV 159 (163)
Q Consensus 130 ~f~~~~~~~~~~~~~~e~-~~~~W~~~~e~~ 159 (163)
+|.+.+.....+.+.+.+ ....-+++.+.+
T Consensus 226 VfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v 256 (306)
T KOG4313|consen 226 VFDLELPLDFIPQNNDGEVQAFELLTLKDCV 256 (306)
T ss_pred EEeccCchhhcCCCCCCceeeEeeecHHHHH
Confidence 888887766555554433 556666665544
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.42 E-value=0.2 Score=40.97 Aligned_cols=82 Identities=18% Similarity=0.044 Sum_probs=51.3
Q ss_pred EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec--eeeeEEEEeeCCCCceEEEEEEEEEecccc------CCCCcCcc
Q 031232 76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKSRAHNTDYQGYMFPLLVQDQL------AEWPEKNV 147 (163)
Q Consensus 76 W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~~e~ 147 (163)
.+|..|.|+..-|..+-|.||..||.|.+..... . ...|.......+ ..-.+|.+.++... ....+++.
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~-va~y~sGVG~SG--~~QTmfy~eVTdA~rsgpGgg~~ee~E~ 362 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKL-VAKYISGVGQSG--DTQTMFYVEVTDARRSGPGGGEKEEDED 362 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhh-hheeecccCCcC--CeeEEEEEEeehhhccCCCCCcccccce
Confidence 5677899998899999999999999999864332 3 333332222122 22345666665422 12233445
Q ss_pred eeEEEEecCCCcc
Q 031232 148 RSRKWVCTFMPVT 160 (163)
Q Consensus 148 ~~~~W~~~~e~~~ 160 (163)
.+..-++++++..
T Consensus 363 IEvv~lsle~a~~ 375 (405)
T KOG4432|consen 363 IEVVRLSLEDAPS 375 (405)
T ss_pred eeEEEechhhhhH
Confidence 7788888887754
No 101
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=0.18 Score=40.18 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=57.8
Q ss_pred eEEEEEEEcCC--CCEEecCccc-CCCCCHHHHHHHHHHHHhCCeeee---eceeeeEEEEeeCCCCc-----eEEEEEE
Q 031232 63 LEVLVISSQKG--KGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIV---ECELLGEWNFKSRAHNT-----DYQGYMF 131 (163)
Q Consensus 63 ~~vLLv~r~~~--~~W~lPGG~v-e~gEs~~eaA~REl~EEtGl~~~~---~~~~l~~~~~~~~~~~~-----~~~~~~f 131 (163)
.-+|||++.-+ +.|.||.+.. ++++++..+|.|.++.-.|=.... ...++|.+.+..+.... ...+++|
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~ 218 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFF 218 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEe
Confidence 46788885533 6899999999 999999999999999998865322 22335533332222111 2334445
Q ss_pred EEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232 132 PLLVQDQLAEWPEKNVRSRKWVCTFMPVT 160 (163)
Q Consensus 132 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~ 160 (163)
.+..-... ......-.+..|++-+++..
T Consensus 219 k~~lv~~~-~~kn~n~edfvWvTkdel~e 246 (263)
T KOG4548|consen 219 KASLVANS-NQKNQNKEDFVWVTKDELGE 246 (263)
T ss_pred eeeecccc-chhcccccceEEechHHHhh
Confidence 44332211 11111124599999887654
No 102
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.52 E-value=0.086 Score=40.68 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCeeeeec----eeeeEEEEeeCCCCce-EEEEEEEEEeccccCCCCcC-cceeEEEEecCCCcc
Q 031232 88 SIQEAALRETIEEAGVTGIVEC----ELLGEWNFKSRAHNTD-YQGYMFPLLVQDQLAEWPEK-NVRSRKWVCTFMPVT 160 (163)
Q Consensus 88 s~~eaA~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~-e~~~~~W~~~~e~~~ 160 (163)
-...||+|-|.-|.||...... .+++.++|........ -+..-|.+.+.......|.. |..+++|++.+|.-.
T Consensus 104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelke 182 (225)
T KOG0142|consen 104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKE 182 (225)
T ss_pred HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHH
Confidence 4678999999999999854332 2377777776544321 12223333333334444433 358899999887543
No 103
>PF14443 DBC1: DBC1
Probab=87.17 E-value=4.4 Score=29.00 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=29.9
Q ss_pred ceEEEEEEEcC-----CCCEEe--cCcccCC-CCCHHHHHHHHHHHHhCCeeee
Q 031232 62 DLEVLVISSQK-----GKGMLF--PKGGWEI-DESIQEAALRETIEEAGVTGIV 107 (163)
Q Consensus 62 ~~~vLLv~r~~-----~~~W~l--PGG~ve~-gEs~~eaA~REl~EEtGl~~~~ 107 (163)
-.++|+.++.+ +|.|.- =||--.. ..++..+|+|=+++-|||+...
T Consensus 7 ~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 7 LLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred heeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 34566665543 255643 2444444 2467899999999999999643
No 104
>PRK10880 adenine DNA glycosylase; Provisional
Probab=87.05 E-value=5.1 Score=33.65 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232 64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVT 104 (163)
Q Consensus 64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~ 104 (163)
++||.+|... |.|+||+. +.. + ..++..|+.|+.
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~ 280 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCc
Confidence 6888887654 78999963 211 1 235556777875
No 105
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=74.01 E-value=3.3 Score=23.52 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=11.9
Q ss_pred cCcccCCCCCHHHHHHHHHHHHh
Q 031232 79 PKGGWEIDESIQEAALRETIEEA 101 (163)
Q Consensus 79 PGG~ve~gEs~~eaA~REl~EEt 101 (163)
-||-..||--|-.++.||+.||.
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 47888888888899999999995
No 106
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=72.04 E-value=8.8 Score=23.72 Aligned_cols=14 Identities=29% Similarity=0.473 Sum_probs=11.5
Q ss_pred CCEEecCcccCCCC
Q 031232 74 KGMLFPKGGWEIDE 87 (163)
Q Consensus 74 ~~W~lPGG~ve~gE 87 (163)
+.|.+|||.+-.+-
T Consensus 22 ~GWl~Pgg~vi~NP 35 (60)
T PF07026_consen 22 NGWLMPGGKVITNP 35 (60)
T ss_pred ceeecCCCeeEcCH
Confidence 46999999998763
No 107
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=70.01 E-value=30 Score=28.00 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHH-HHHhCCeeeeeceeeeEEEEeeCCC--CceEEEEEEEEEec
Q 031232 60 EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRET-IEEAGVTGIVECELLGEWNFKSRAH--NTDYQGYMFPLLVQ 136 (163)
Q Consensus 60 ~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl-~EEtGl~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~ 136 (163)
+++.+||-|.... .||.|-.++.-...++-.|.. .+.|+......++ +.+|....+.+ ..+.+..-|+....
T Consensus 34 ~~~p~VLtV~q~~----aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQ-LYTF~Dr~R~~~~g~rvisv~YLgLtr 108 (322)
T COG4111 34 DGGPRVLTVRQGA----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQ-LYTFADRDRRNEGGMRVISVSYLGLTR 108 (322)
T ss_pred CCCceEEEecccc----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHh-hhhhccccccCcCCceEEEEEEeeecc
Confidence 4667888886643 499999999876666666665 5568888877777 65544333322 22455555655443
No 108
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=45.04 E-value=67 Score=26.00 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=14.4
Q ss_pred eEEEEEEEcCC----CCEEecCc
Q 031232 63 LEVLVISSQKG----KGMLFPKG 81 (163)
Q Consensus 63 ~~vLLv~r~~~----~~W~lPGG 81 (163)
+++||.+|... |.|+||+-
T Consensus 239 ~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 239 GEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CeEEEEeCCCCchhhccccCCCC
Confidence 36888888654 77999973
No 109
>PRK13910 DNA glycosylase MutY; Provisional
Probab=30.80 E-value=73 Score=26.05 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=12.7
Q ss_pred EEEEEEEcCC---CCEEecC
Q 031232 64 EVLVISSQKG---KGMLFPK 80 (163)
Q Consensus 64 ~vLLv~r~~~---~~W~lPG 80 (163)
++||.+|..+ |.|+||+
T Consensus 198 ~~ll~kr~~~l~~gl~~fP~ 217 (289)
T PRK13910 198 QIALEKIEQKLYLGMHHFPN 217 (289)
T ss_pred EEEEEECCCchhcccccCCC
Confidence 6888877432 7899996
No 110
>PF14044 NETI: NETI protein
Probab=26.10 E-value=64 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=16.1
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCe
Q 031232 82 GWEIDESIQEAALRETIEEAGVT 104 (163)
Q Consensus 82 ~ve~gEs~~eaA~REl~EEtGl~ 104 (163)
.|+.+||+.+|+.|- ++ -|+.
T Consensus 3 eV~enETI~~CL~RM-~~-eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARM-KK-EGYM 23 (57)
T ss_pred eccCCCcHHHHHHHH-HH-cCCC
Confidence 367899999999994 33 3776
No 111
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=25.74 E-value=18 Score=30.21 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.3
Q ss_pred CCEEecCcccCCCCCHHHHHHHHHHHHhCCeee
Q 031232 74 KGMLFPKGGWEIDESIQEAALRETIEEAGVTGI 106 (163)
Q Consensus 74 ~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~ 106 (163)
..|.||.|++..||-+..++.|+-.||+|....
T Consensus 264 e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 264 ENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred ccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 579999999999999999999999999998743
No 112
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=24.54 E-value=60 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=12.6
Q ss_pred CCceEEEEEEEcCCCCEEecCcccCCC
Q 031232 60 EEDLEVLVISSQKGKGMLFPKGGWEID 86 (163)
Q Consensus 60 ~~~~~vLLv~r~~~~~W~lPGG~ve~g 86 (163)
.+..-+-++ ...++.|.+|||.--|+
T Consensus 55 ~~t~GiYv~-sstG~~w~Ipgg~~YPd 80 (122)
T PF06453_consen 55 KNTKGIYVV-SSTGGVWFIPGGQDYPD 80 (122)
T ss_dssp TTT-EEEEE-ETTS-EEEE---SSTTH
T ss_pred CCCCcEEEE-eCCCCeEEccCCCcCch
Confidence 444445544 44457899999986653
No 113
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=24.28 E-value=42 Score=27.60 Aligned_cols=34 Identities=18% Similarity=-0.033 Sum_probs=30.2
Q ss_pred CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee
Q 031232 74 KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE 108 (163)
Q Consensus 74 ~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~ 108 (163)
..|.+ .|+.+-++++.+++.|++.++++......
T Consensus 55 ~~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~h 88 (295)
T KOG0648|consen 55 QKWYL-QGRKGIWLKLPEELARLVEEAAKYGFDYH 88 (295)
T ss_pred HHHHH-ccCcccceechHHHHhHHHHHHhcCcEEe
Confidence 36998 99999999999999999999999986543
No 114
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=21.61 E-value=57 Score=27.44 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=19.9
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCeee
Q 031232 82 GWEIDESIQEAALRETIEEAGVTGI 106 (163)
Q Consensus 82 ~ve~gEs~~eaA~REl~EEtGl~~~ 106 (163)
.|++.+-..+.+-||++||++|-+.
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~i 432 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGVI 432 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCccee
Confidence 3566777788999999999988643
No 115
>PF13014 KH_3: KH domain
Probab=20.57 E-value=99 Score=17.03 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCeeeeec
Q 031232 93 ALRETIEEAGVTGIVEC 109 (163)
Q Consensus 93 A~REl~EEtGl~~~~~~ 109 (163)
-++++.++||..+....
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 37999999999977644
No 116
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=1e+02 Score=23.23 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=12.1
Q ss_pred CEEecCcccCCCCCH
Q 031232 75 GMLFPKGGWEIDESI 89 (163)
Q Consensus 75 ~W~lPGG~ve~gEs~ 89 (163)
.|.+|-|.+|.|+.+
T Consensus 128 dWY~PEG~mEGg~Kl 142 (192)
T COG4353 128 DWYFPEGGMEGGPKL 142 (192)
T ss_pred eeeccCccccccccc
Confidence 599999999987543
Done!