BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031234
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I +NELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 90
Query: 142 CLGQWR 147
+ W+
Sbjct: 91 YITDWQ 96
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSS-GYQ 108
F DRD SG ID+NEL+QALS GY+
Sbjct: 99 FRTYDRDNSGMIDKNELKQALSGFGYR 125
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 13 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 71
Query: 142 CLGQWR 147
+ W+
Sbjct: 72 YITDWQ 77
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFS 111
F DRD SG ID+NEL+QALS R S
Sbjct: 80 FRTYDRDNSGMIDKNELKQALSGAGYRLS 108
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 13 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 71
Query: 142 CLGQWR 147
+ W+
Sbjct: 72 YITDWQ 77
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSS-GYQ 108
F DRD SG ID+NEL+QALS GY+
Sbjct: 80 FRTYDRDNSGMIDKNELKQALSGFGYR 106
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 31 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 89
Query: 142 CLGQWR 147
+ W+
Sbjct: 90 YITDWQ 95
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSS-GYQ 108
F DRD SG ID+NEL+QALS GY+
Sbjct: 98 FRTYDRDNSGMIDKNELKQALSGFGYR 124
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 10 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 68
Query: 142 CLGQWR 147
+ W+
Sbjct: 69 YITDWQ 74
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQ 108
F DRD SG ID+NEL+QAL SGY+
Sbjct: 77 FRTYDRDNSGMIDKNELKQAL-SGYR 101
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 10 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 68
Query: 142 CLGQWR 147
+ W+
Sbjct: 69 YITDWQ 74
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSS-GYQ 108
F DRD SG ID+NEL+QALS GY+
Sbjct: 77 FRTYDRDNSGMIDKNELKQALSGFGYR 103
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 9 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 67
Query: 142 CLGQWR 147
+ W+
Sbjct: 68 YITDWQ 73
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSS-GYQ 108
F DRD SG ID+NEL+QALS GY+
Sbjct: 76 FRTYDRDNSGMIDKNELKQALSGFGYR 102
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALS-----SGYQRFSLSTIRLLMFLFRNPHD 127
PG D + + + G ID +ELQ+ L+ GY+ F+L T RL++ +
Sbjct: 28 PGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM- 86
Query: 128 SLRIGPKEFADLWSCLGQWR---VSILTDYS 155
S +G EF +LW+ L WR +S+ TD S
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISLDTDRS 117
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F +D DRSG +D ELQ+AL++ R S + + + G F D +C
Sbjct: 109 FISLDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN------GKITFDDYIAC 162
Query: 143 LGQWRVSILTD 153
+ R LTD
Sbjct: 163 CVKLRA--LTD 171
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALS-----SGYQRFSLSTIRLLMFLFRNPHD 127
PG D + + + G ID +ELQ+ L+ GY+ F+L T RL++ +
Sbjct: 28 PGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM- 86
Query: 128 SLRIGPKEFADLWSCLGQWR---VSILTDYS 155
S +G EF +LW+ L WR +S TD S
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISFDTDRS 117
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146
D DRSG +D ELQ+AL++ R S + + + G F D +C +
Sbjct: 113 DTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN------GKITFDDYIACCVKL 166
Query: 147 RVSILTD 153
R LTD
Sbjct: 167 RA--LTD 171
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 90 RSGFIDENELQQALS-----SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144
+ G ID +ELQ+ L+ GY+ F+L T RL++ + S +G EF +LW+ L
Sbjct: 14 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM-SGTMGFNEFKELWAVLN 72
Query: 145 QWR 147
WR
Sbjct: 73 GWR 75
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146
D DRSG +D ELQ+AL++ R + T+ + + G F D +C +
Sbjct: 82 DSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS------GKITFDDYIACCVKL 135
Query: 147 RVSILTD 153
R LTD
Sbjct: 136 RA--LTD 140
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLM 119
F G S DV R +D D+SG++DE EL+ Q SG + + S + LM
Sbjct: 31 FQTSGLSKMSANQVKDVFR---FIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLM 87
Query: 120 FLFRNPHDSLRIGPKEFADL 139
N D +IG +EF ++
Sbjct: 88 AAADNDGDG-KIGAEEFQEM 106
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 90 RSGFIDENELQQALS-SG----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144
+ G +D ELQ+ L+ SG Y FSL T R+++ + H ++G F +LW+ L
Sbjct: 12 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTG-KMGFNAFKELWAALN 70
Query: 145 QWRVSILT 152
W+ + +T
Sbjct: 71 AWKENFMT 78
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
+F VD+D SG ++ +EL+QA+ G + LS L + R + G F D +
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAI--GLMGYRLSPQTLTTIVKRYSKN----GRIFFDDYVA 128
Query: 142 CLGQWRVSILTDY 154
C + R LTD+
Sbjct: 129 CCVKLRA--LTDF 139
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 90 RSGFIDENELQQALSSG-----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144
+ G +D ELQ+ L+ Y FSL T R+++ + H ++G F +LW+ L
Sbjct: 12 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTG-KMGFNAFKELWAALN 70
Query: 145 QWRVSILT 152
W+ + +T
Sbjct: 71 AWKENFMT 78
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
+F VD+D SG ++ +EL+QA+ G + LS L + R + G F D +
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAI--GLMGYRLSPQTLTTIVKRYSKN----GRIFFDDYVA 128
Query: 142 CLGQWRVSILTDY 154
C + R LTD+
Sbjct: 129 CCVKLRA--LTDF 139
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQ 108
G F+A + H F + DV + F ++D+D+ GFIDE+EL L SS +
Sbjct: 16 GAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKDGFIDEDELGSILKGFSSDAR 75
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S + LM D +IG +EF+ L +
Sbjct: 76 DLSAKETKTLMAAGDKDGDG-KIGVEEFSTLVA 107
>pdb|1RJV|A Chain A, Solution Structure Of Human Alpha-Parvalbumin Refined With
A Paramagnetism-Based Strategy
pdb|1RK9|A Chain A, Solution Structure Of Human Alpha-Parvalbumin (Minimized
Average Structure)
Length = 110
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQ 108
G FSA + H F + DV + F M+D+D+SGFI+E+EL + S +
Sbjct: 17 GAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDAR 76
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S ++LM D +IG EF+ L +
Sbjct: 77 DLSAKETKMLMAAGDKDGDG-KIGVDEFSTLVA 108
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 75 THPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
+ DV + F ++D+D+SGFI+E+EL L SS + S + LM D +I
Sbjct: 3 SADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDG-KI 61
Query: 132 GPKEFADLWS 141
G +EF+ L +
Sbjct: 62 GVEEFSTLVA 71
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQ 108
G F+A + H F + DV + F ++D+D+SGFI+E+EL L SS +
Sbjct: 16 GAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAR 75
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S + LM D +IG +EF+ L +
Sbjct: 76 DLSAKETKTLMAAGDKDGDG-KIGVEEFSTLVA 107
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 75 THPDVIRSFEMVDRDRSGFIDENELQQALS--SGYQR-FSLSTIRLLMFLFRNPHDSLRI 131
T V FE++D+D+SGFI+E EL+ L S + R + + + L+ + HD +I
Sbjct: 39 TDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDG-KI 97
Query: 132 GPKEFADLWS 141
G EFA + +
Sbjct: 98 GADEFAKMVA 107
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 75 THPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
+ DV + F ++D+D+SGFI+E+EL L SS S + LM D +I
Sbjct: 39 SADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKETKTLMAAGDKDGDG-KI 97
Query: 132 GPKEFADLWS 141
G +EF+ L +
Sbjct: 98 GVEEFSTLVA 107
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 65 AYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124
Y SA + +++ F VD D SG I EL ALSS FSL+T L+ ++
Sbjct: 15 VYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDK 74
Query: 125 PHDSLRIGPKEFADL 139
H S I EF DL
Sbjct: 75 NH-SGEITFDEFKDL 88
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++D+D+SGFI+E+EL+
Sbjct: 24 SFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELK 65
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++D+D+SGFI+E+EL+
Sbjct: 23 SFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELK 64
>pdb|1BU3|A Chain A, Refined Crystal Structure Of Calcium-Bound Silver Hake (Pi
4.2) Parvalbumin At 1.65 A
Length = 109
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLMFLF 122
+ + D+ ++F ++D+D+SGFI+E+EL+ Q S+G + + + + +
Sbjct: 31 FAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90
Query: 123 RNPHDSLRIGPKEFADL 139
+ D IG E+A L
Sbjct: 91 DSDGDG-AIGVDEWAAL 106
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQ 108
G F+A + H F + DV + F ++D+D+SGFI+E+EL L SS +
Sbjct: 16 GAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAR 75
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S + LM + S +I +EF+ L +
Sbjct: 76 DLSAKETKTLM-AAGDKDGSGKIEVEEFSTLVA 107
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 83 FEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLMFLFRNPHD-SLRIGPKEFAD 138
F ++D D+SGFI+E+EL+ Q SG + + S + FL HD +IG +EF +
Sbjct: 47 FRILDNDQSGFIEEDELKYFLQRFESGARVLTASETK--TFLAAADHDGDGKIGAEEFQE 104
Query: 139 L 139
+
Sbjct: 105 M 105
>pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And
Atomic Resolution (0.91 A).
pdb|3PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PVB|A Chain A, X-Ray Structure Of A New Crystal Form Of Pike 4.10
Parvalbumin
pdb|2PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|4PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
Length = 108
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS-----LSTIRLLMFLFRNPHDS-LRI 131
DV ++F ++D+D+SGFI+E+EL+ L Q FS L+ FL D I
Sbjct: 42 DVKKAFYVIDQDKSGFIEEDELKLFL----QNFSPSARALTDAETKAFLADGDKDGDGMI 97
Query: 132 GPKEFA 137
G EFA
Sbjct: 98 GVDEFA 103
>pdb|2KQY|A Chain A, Solution Structure Of Avian Thymic Hormone
Length = 108
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS--SGYQRFSLSTIRLLMF 120
FS G S+ P + + F ++D+D+SGFI+E ELQ L S R L++ F
Sbjct: 30 FSTVGLSSKTP---DQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARV-LTSAETKAF 85
Query: 121 LFRNPHDS-LRIGPKEFADL 139
L D +IG +EF L
Sbjct: 86 LAAGDTDGDGKIGVEEFQSL 105
>pdb|3FS7|A Chain A, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|B Chain B, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|C Chain C, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|D Chain D, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|E Chain E, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|F Chain F, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|G Chain G, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|H Chain H, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
Length = 109
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS--SGYQRFSLSTIRLLMF 120
FS G S+ P + + F ++D+D+SGFI+E ELQ L S R L++ F
Sbjct: 31 FSTVGLSSKTP---DQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARV-LTSAETKAF 86
Query: 121 LFRNPHDS-LRIGPKEFADL 139
L D +IG +EF L
Sbjct: 87 LAAGDTDGDGKIGVEEFQSL 106
>pdb|1A75|B Chain B, Whiting Parvalbumin
Length = 109
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
+ + D+ ++F +D+D+SGFI+E+EL+
Sbjct: 31 FAKCGLSGKSADDIKKAFVFIDQDKSGFIEEDELK 65
>pdb|1A75|A Chain A, Whiting Parvalbumin
Length = 108
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
+ + D+ ++F +D+D+SGFI+E+EL+
Sbjct: 30 FAKCGLSGKSADDIKKAFVFIDQDKSGFIEEDELK 64
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLM 119
F G S D+ R +D D+SG++D +EL+ Q S + + S + LM
Sbjct: 30 FQTSGLSKMSASQVKDIFR---FIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLM 86
Query: 120 FLFRNPHDSLRIGPKEFADL 139
N D +IG EF ++
Sbjct: 87 DAADNDGDG-KIGADEFQEM 105
>pdb|1B9A|A Chain A, Parvalbumin (Mutation;d51a, F102w)
Length = 108
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++ +D+SGFI+E+EL+
Sbjct: 23 SFNHKAFFAKVGLTSKSADDVKKAFAIIAQDKSGFIEEDELK 64
>pdb|1B8C|A Chain A, Parvalbumin
pdb|1B8C|B Chain B, Parvalbumin
pdb|1B8L|A Chain A, Calcium-Bound D51aE101DF102W TRIPLE MUTANT OF BETA CARP
Parvalbumin
Length = 108
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++ +D+SGFI+E+EL+
Sbjct: 23 SFNHKAFFAKVGLTSKSADDVKKAFAIIAQDKSGFIEEDELK 64
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105
+ P ++ +F M+D++R GFID N+L++ SS
Sbjct: 11 TKLPQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSS 47
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT+ D + +F+ DR+ GFI EL+ LS +R S + ++ L
Sbjct: 81 GTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT+ D + +F+ DR+ GFI EL+ LS +R S + ++ L
Sbjct: 82 GTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 129
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105
P ++ +F M+D++R GFID N+L++ SS
Sbjct: 17 LPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSS 51
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105
P ++ +F M+D++R GFID N+L++ SS
Sbjct: 17 LPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSS 51
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 78 DVIRSFEMVDRDRSGFIDENELQQALSS 105
DV + F+ +D D SGFI+E EL+ L S
Sbjct: 43 DVKKVFKAIDADASGFIEEEELKFVLKS 70
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 81 RSFEMVDRDRSGFIDENELQQALSS 105
+F M+D++R GFID N+L++ SS
Sbjct: 6 EAFTMIDQNRDGFIDINDLKEEFSS 30
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 81 RSFEMVDRDRSGFIDENELQQALS 104
++FE+ D+D +G+IDENEL L
Sbjct: 195 KAFELYDQDGNGYIDENELDALLK 218
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 143
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 74 GTHP-DVIR-SFEMVDRDRSGFIDENELQQALSSGYQRFS 111
GT P DVIR +F D + SGFI E+ L++ L++ RF+
Sbjct: 71 GTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFT 110
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 81 RSFEMVDRDRSGFIDENELQQALSS 105
+F M+D++R GFID+ +L L+S
Sbjct: 11 EAFNMIDQNRDGFIDKEDLHDMLAS 35
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ LS +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122
+ P + + + F VDRDRSG ++ NEL G R S T +M +F
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIF 96
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122
+ P + + + F VDRDRSG ++ NEL G R S T +M +F
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIF 96
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 78 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 125
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 79 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 126
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 78 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 125
>pdb|2W56|B Chain B, Structure Of The Hypothetical Protein Vc0508 From Vibrio
Cholerae Vsp-Ii Pathogenicity Island
Length = 147
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 111 SLSTIRLLMFLFRNPHDSLRIG---PKEFADLWSCLGQWRVSILTDYS 155
+L+T R L+F FR+ S G P E A + G+W + +TD++
Sbjct: 34 ALTTSRYLVFNFRDKSYSADEGGFHPVEMAICQTSTGEWSIEYITDFA 81
>pdb|2W56|A Chain A, Structure Of The Hypothetical Protein Vc0508 From Vibrio
Cholerae Vsp-Ii Pathogenicity Island
Length = 147
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 111 SLSTIRLLMFLFRNPHDSLRIG---PKEFADLWSCLGQWRVSILTDYS 155
+L+T R L+F FR+ S G P E A + G+W + +TD++
Sbjct: 34 ALTTSRYLVFNFRDKSYSADEGGFHPVEMAICQTSTGEWSIEYITDFA 81
>pdb|3GYC|A Chain A, Crystal Structure Of Putative Glycoside Hydrolase
(Yp_001304622.1) From Parabacteroides Distasonis Atcc
8503 At 1.85 A Resolution
pdb|3GYC|B Chain B, Crystal Structure Of Putative Glycoside Hydrolase
(Yp_001304622.1) From Parabacteroides Distasonis Atcc
8503 At 1.85 A Resolution
Length = 393
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 62 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGF-----IDENELQQALSSGYQRFSLST 114
+ YG++ F P + +V+++ E V R+R G+ D+ EL +++ +R ++T
Sbjct: 247 KLVGYGYNRFLPDDYKNVVKNAERVYRERPGYWQKLLTDKIELXASVARKNRRPLVTT 304
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS 111
PG + ++ F++ D+D +G I EL+ L+S ++ S
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLS 110
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd)
From Burkholderia Thailandensis E264
Length = 368
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 102 ALSSG-YQRFSLSTIRLLMFLFRNPHDSLRI 131
AL+ G YQRFSL IR ++ + HD R+
Sbjct: 223 ALADGAYQRFSLDYIRRVVAQLKREHDGARV 253
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 74 GTHP-DVIR-SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIR 116
GT P D +R +F M D D GFI E+ L+ L + FS I+
Sbjct: 80 GTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIK 124
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 82 SFEMVDRDRSGFIDENELQQALSSGYQ 108
+F++ D+DR+G ID EL + S Y+
Sbjct: 100 TFKIYDKDRNGCIDRQELLDIVESIYK 126
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 78 DVIRSFEMVDRDRSGFIDENELQQALSS-GY 107
++ +F++ DRD +GFI + EL A+ S GY
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGY 67
>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|F Chain F, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 196
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 81 RSFEMVDRDRSGFIDENELQQALSS 105
+F+++D+D+ GFI +N+++ S
Sbjct: 61 EAFQLIDQDKDGFISKNDIRATFDS 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,171
Number of Sequences: 62578
Number of extensions: 105064
Number of successful extensions: 376
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 81
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)