Query 031234
Match_columns 163
No_of_seqs 174 out of 1477
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037 Ca2+-binding protein, 99.8 1.3E-19 2.9E-24 144.6 14.5 89 70-161 51-140 (221)
2 KOG0037 Ca2+-binding protein, 99.6 1.7E-14 3.6E-19 115.5 9.4 82 77-160 124-205 (221)
3 KOG0027 Calmodulin and related 99.5 1E-13 2.3E-18 105.2 9.6 86 73-160 4-100 (151)
4 COG5126 FRQ1 Ca2+-binding prot 99.4 8E-13 1.7E-17 102.0 9.1 90 68-160 11-107 (160)
5 cd05022 S-100A13 S-100A13: S-1 99.4 1.6E-12 3.5E-17 91.4 7.9 68 76-144 7-77 (89)
6 PTZ00183 centrin; Provisional 99.4 3.4E-12 7.3E-17 95.5 9.9 91 68-160 8-105 (158)
7 PF13499 EF-hand_7: EF-hand do 99.4 4.8E-12 1.1E-16 82.7 7.9 62 78-140 1-66 (66)
8 COG5126 FRQ1 Ca2+-binding prot 99.3 4.4E-12 9.6E-17 97.9 8.2 68 73-141 88-155 (160)
9 cd05027 S-100B S-100B: S-100B 99.3 1.4E-11 3.1E-16 86.3 8.8 68 76-144 7-81 (88)
10 PTZ00184 calmodulin; Provision 99.3 1.6E-11 3.4E-16 90.5 9.3 88 71-160 5-99 (149)
11 smart00027 EH Eps15 homology d 99.3 1.8E-11 3.9E-16 86.4 8.8 74 72-148 5-78 (96)
12 KOG0027 Calmodulin and related 99.3 2.6E-11 5.6E-16 92.0 8.1 66 75-141 83-148 (151)
13 cd05025 S-100A1 S-100A1: S-100 99.2 1.1E-10 2.5E-15 81.6 9.7 72 76-148 8-86 (92)
14 cd05031 S-100A10_like S-100A10 99.2 6.8E-11 1.5E-15 83.2 8.4 69 76-145 7-82 (94)
15 cd05026 S-100Z S-100Z: S-100Z 99.2 9E-11 1.9E-15 82.8 8.6 70 76-146 9-85 (93)
16 cd00052 EH Eps15 homology doma 99.2 9.9E-11 2.2E-15 76.0 7.5 62 80-144 2-63 (67)
17 cd05029 S-100A6 S-100A6: S-100 99.2 2.2E-10 4.9E-15 80.2 8.8 68 77-145 10-82 (88)
18 KOG0028 Ca2+-binding protein ( 99.2 2.2E-10 4.7E-15 88.2 9.3 88 71-160 27-121 (172)
19 cd00213 S-100 S-100: S-100 dom 99.1 2.5E-10 5.5E-15 78.9 7.5 68 75-143 6-80 (88)
20 KOG0031 Myosin regulatory ligh 99.1 3.5E-10 7.7E-15 86.6 7.6 90 66-161 21-117 (171)
21 cd05023 S-100A11 S-100A11: S-1 99.0 1.6E-09 3.5E-14 76.0 8.7 68 76-144 8-82 (89)
22 PF13833 EF-hand_8: EF-hand do 99.0 1.2E-09 2.6E-14 68.9 7.3 52 90-142 1-53 (54)
23 cd00051 EFh EF-hand, calcium b 99.0 1.6E-09 3.5E-14 67.3 7.2 61 79-140 2-62 (63)
24 KOG0030 Myosin essential light 99.0 3.4E-09 7.4E-14 80.0 8.5 90 70-161 4-104 (152)
25 PTZ00183 centrin; Provisional 98.9 4.6E-09 1E-13 78.4 8.5 83 76-160 52-141 (158)
26 KOG0028 Ca2+-binding protein ( 98.9 5.3E-09 1.2E-13 80.6 7.2 66 75-141 104-169 (172)
27 PTZ00184 calmodulin; Provision 98.9 1E-08 2.2E-13 75.4 8.4 83 76-160 46-135 (149)
28 PLN02964 phosphatidylserine de 98.9 6.9E-09 1.5E-13 95.2 8.9 85 70-160 136-230 (644)
29 cd05030 calgranulins Calgranul 98.8 2E-08 4.3E-13 70.1 7.4 67 76-143 7-80 (88)
30 KOG0044 Ca2+ sensor (EF-Hand s 98.8 2E-08 4.3E-13 79.9 7.4 82 77-160 64-162 (193)
31 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.3E-08 7.1E-13 72.7 7.6 64 73-141 44-107 (116)
32 PF14658 EF-hand_9: EF-hand do 98.7 8.2E-08 1.8E-12 63.9 7.0 61 81-142 2-64 (66)
33 KOG0034 Ca2+/calmodulin-depend 98.7 1.2E-07 2.7E-12 75.0 8.4 66 77-143 104-176 (187)
34 KOG0031 Myosin regulatory ligh 98.6 1.2E-07 2.5E-12 72.9 7.6 65 76-141 100-164 (171)
35 KOG0036 Predicted mitochondria 98.6 3.9E-07 8.5E-12 79.3 9.8 85 74-160 11-97 (463)
36 cd05024 S-100A10 S-100A10: A s 98.5 9E-07 1.9E-11 62.5 9.3 71 76-148 7-82 (91)
37 KOG0041 Predicted Ca2+-binding 98.5 1.4E-07 3.1E-12 75.3 5.8 73 70-143 92-164 (244)
38 KOG0044 Ca2+ sensor (EF-Hand s 98.5 6.7E-07 1.5E-11 71.2 9.1 82 77-160 26-115 (193)
39 KOG0030 Myosin essential light 98.5 5.8E-07 1.2E-11 68.0 6.8 66 72-139 83-148 (152)
40 KOG0036 Predicted mitochondria 98.5 6.6E-07 1.4E-11 77.9 8.0 68 73-141 78-145 (463)
41 PF00036 EF-hand_1: EF hand; 98.4 3.8E-07 8.3E-12 51.2 4.3 28 78-105 1-28 (29)
42 PLN02964 phosphatidylserine de 98.4 1E-06 2.2E-11 81.1 8.9 64 78-142 180-243 (644)
43 KOG0377 Protein serine/threoni 98.4 1.3E-06 2.8E-11 76.9 8.1 67 77-144 547-617 (631)
44 PF13405 EF-hand_6: EF-hand do 98.4 7E-07 1.5E-11 50.4 4.3 30 78-107 1-31 (31)
45 PF12763 EF-hand_4: Cytoskelet 98.2 1E-05 2.2E-10 58.4 8.5 72 71-146 4-75 (104)
46 PF00036 EF-hand_1: EF hand; 98.1 3E-06 6.5E-11 47.5 3.4 29 114-143 1-29 (29)
47 PF14788 EF-hand_10: EF hand; 98.0 2.6E-05 5.6E-10 49.3 6.3 50 93-143 1-50 (51)
48 KOG0034 Ca2+/calmodulin-depend 98.0 5.7E-05 1.2E-09 59.9 9.3 84 71-160 27-119 (187)
49 PRK12309 transaldolase/EF-hand 98.0 2.2E-05 4.9E-10 68.6 7.4 54 76-143 333-386 (391)
50 PF13202 EF-hand_5: EF hand; P 98.0 1.4E-05 3.1E-10 43.2 3.8 25 79-103 1-25 (25)
51 KOG4223 Reticulocalbin, calume 97.9 2.2E-05 4.7E-10 66.6 6.0 82 77-160 163-256 (325)
52 KOG0040 Ca2+-binding actin-bun 97.8 5.6E-05 1.2E-09 74.3 7.4 89 69-159 2245-2348(2399)
53 KOG0046 Ca2+-binding actin-bun 97.7 9.9E-05 2.2E-09 66.2 6.7 71 71-143 13-86 (627)
54 PF13499 EF-hand_7: EF-hand do 97.7 0.00011 2.4E-09 47.5 4.9 45 114-160 1-55 (66)
55 KOG0038 Ca2+-binding kinase in 97.6 9.9E-05 2.1E-09 56.7 4.7 70 78-148 109-183 (189)
56 KOG2643 Ca2+ binding protein, 97.4 0.00027 5.9E-09 62.2 5.7 82 76-159 232-332 (489)
57 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00011 2.5E-09 53.6 2.0 61 75-138 52-112 (113)
58 PF13202 EF-hand_5: EF hand; P 97.3 0.00032 7E-09 37.8 3.2 25 115-140 1-25 (25)
59 KOG4223 Reticulocalbin, calume 97.3 0.00077 1.7E-08 57.3 6.5 88 72-161 72-179 (325)
60 PF09279 EF-hand_like: Phospho 97.2 0.0011 2.3E-08 45.1 5.8 62 78-141 1-68 (83)
61 smart00054 EFh EF-hand, calciu 97.2 0.00071 1.5E-08 35.1 3.5 28 78-105 1-28 (29)
62 PF13405 EF-hand_6: EF-hand do 97.1 0.00084 1.8E-08 37.5 3.3 27 114-141 1-27 (31)
63 KOG0377 Protein serine/threoni 96.9 0.0061 1.3E-07 54.2 9.1 66 77-143 464-576 (631)
64 cd00051 EFh EF-hand, calcium b 96.9 0.0029 6.3E-08 38.4 5.3 44 115-160 2-51 (63)
65 PF13833 EF-hand_8: EF-hand do 96.9 0.002 4.3E-08 40.1 4.4 32 74-105 22-53 (54)
66 KOG4065 Uncharacterized conser 96.9 0.0032 6.9E-08 46.6 5.9 58 81-139 71-142 (144)
67 cd00052 EH Eps15 homology doma 96.8 0.0029 6.3E-08 40.3 4.4 43 116-160 2-48 (67)
68 KOG4251 Calcium binding protei 96.5 0.0014 3E-08 54.4 2.1 65 75-140 99-166 (362)
69 cd05025 S-100A1 S-100A1: S-100 96.5 0.0079 1.7E-07 41.7 5.6 46 113-160 9-67 (92)
70 KOG1029 Endocytic adaptor prot 96.5 0.048 1E-06 51.5 12.1 71 72-145 190-260 (1118)
71 smart00027 EH Eps15 homology d 96.5 0.0081 1.8E-07 41.9 5.4 46 113-160 10-59 (96)
72 KOG0042 Glycerol-3-phosphate d 96.4 0.0045 9.7E-08 56.4 4.6 75 70-145 586-660 (680)
73 cd00252 SPARC_EC SPARC_EC; ext 96.3 0.0064 1.4E-07 44.6 4.4 50 109-160 44-95 (116)
74 KOG4666 Predicted phosphate ac 96.3 0.006 1.3E-07 52.3 4.7 75 71-148 290-365 (412)
75 KOG2562 Protein phosphatase 2 96.3 0.0076 1.7E-07 53.6 5.3 74 82-160 283-366 (493)
76 smart00054 EFh EF-hand, calciu 96.3 0.0051 1.1E-07 31.6 2.7 27 115-142 2-28 (29)
77 KOG0751 Mitochondrial aspartat 96.1 0.023 5E-07 51.3 7.5 80 76-160 107-194 (694)
78 KOG0751 Mitochondrial aspartat 96.1 0.033 7.1E-07 50.3 8.3 89 71-161 27-124 (694)
79 cd05026 S-100Z S-100Z: S-100Z 95.9 0.024 5.2E-07 39.6 5.6 45 114-160 11-68 (93)
80 KOG0169 Phosphoinositide-speci 95.9 0.02 4.3E-07 53.6 6.4 79 76-156 135-216 (746)
81 cd05027 S-100B S-100B: S-100B 95.9 0.029 6.2E-07 39.0 5.6 46 113-160 8-66 (88)
82 PRK12309 transaldolase/EF-hand 95.4 0.042 9.1E-07 48.2 6.1 55 97-160 313-372 (391)
83 cd05023 S-100A11 S-100A11: S-1 95.3 0.059 1.3E-06 37.5 5.6 45 114-160 10-67 (89)
84 PF05517 p25-alpha: p25-alpha 95.3 0.14 2.9E-06 39.3 8.1 63 80-143 2-70 (154)
85 cd00213 S-100 S-100: S-100 dom 95.3 0.059 1.3E-06 36.6 5.5 47 113-160 8-66 (88)
86 KOG1955 Ral-GTPase effector RA 94.9 0.04 8.7E-07 49.8 4.6 65 75-142 229-293 (737)
87 PF14788 EF-hand_10: EF hand; 94.8 0.056 1.2E-06 34.2 3.8 30 76-105 20-49 (51)
88 KOG2643 Ca2+ binding protein, 94.5 0.025 5.4E-07 50.2 2.3 48 94-142 405-453 (489)
89 cd05029 S-100A6 S-100A6: S-100 94.0 0.08 1.7E-06 36.7 3.8 33 74-106 48-80 (88)
90 cd05031 S-100A10_like S-100A10 93.9 0.04 8.6E-07 38.3 2.0 33 75-107 49-81 (94)
91 cd05022 S-100A13 S-100A13: S-1 93.8 0.092 2E-06 36.7 3.7 30 77-106 47-76 (89)
92 KOG3555 Ca2+-binding proteogly 93.6 0.12 2.6E-06 44.9 4.7 67 70-141 243-309 (434)
93 KOG3866 DNA-binding protein of 93.6 0.11 2.4E-06 44.6 4.4 57 82-139 249-321 (442)
94 KOG1707 Predicted Ras related/ 93.5 0.22 4.8E-06 45.8 6.5 70 71-140 189-263 (625)
95 cd05030 calgranulins Calgranul 93.2 0.12 2.7E-06 35.6 3.5 31 76-106 50-80 (88)
96 KOG0035 Ca2+-binding actin-bun 93.0 0.33 7.1E-06 46.6 7.1 66 76-142 746-816 (890)
97 PF12763 EF-hand_4: Cytoskelet 93.0 0.17 3.7E-06 36.4 4.1 30 76-105 42-71 (104)
98 KOG4666 Predicted phosphate ac 92.8 0.26 5.7E-06 42.5 5.6 65 77-142 259-324 (412)
99 KOG4578 Uncharacterized conser 92.0 0.084 1.8E-06 45.5 1.6 63 78-141 334-397 (421)
100 KOG2243 Ca2+ release channel ( 92.0 0.29 6.3E-06 49.3 5.3 57 82-140 4062-4118(5019)
101 cd05024 S-100A10 S-100A10: A s 91.9 0.27 5.9E-06 34.7 3.9 32 75-106 46-77 (91)
102 KOG4251 Calcium binding protei 90.9 0.56 1.2E-05 39.2 5.4 57 81-138 285-341 (362)
103 KOG0038 Ca2+-binding kinase in 90.7 0.84 1.8E-05 35.3 5.7 79 81-160 75-164 (189)
104 PF08414 NADPH_Ox: Respiratory 90.6 1.5 3.3E-05 31.4 6.7 63 76-143 29-93 (100)
105 PF05042 Caleosin: Caleosin re 88.5 3.9 8.4E-05 32.2 8.1 64 78-142 8-124 (174)
106 KOG1707 Predicted Ras related/ 88.2 0.97 2.1E-05 41.7 5.2 65 71-143 309-378 (625)
107 PF08726 EFhand_Ca_insen: Ca2+ 88.0 0.8 1.7E-05 30.6 3.5 57 74-138 3-65 (69)
108 KOG1924 RhoA GTPase effector D 87.5 0.86 1.9E-05 43.5 4.5 11 129-139 711-721 (1102)
109 PF14658 EF-hand_9: EF-hand do 87.0 1.4 3E-05 29.3 4.1 32 74-105 32-64 (66)
110 PTZ00373 60S Acidic ribosomal 86.7 3.5 7.7E-05 30.1 6.5 55 78-138 4-58 (112)
111 KOG1924 RhoA GTPase effector D 86.0 1.6 3.5E-05 41.8 5.4 11 110-120 713-723 (1102)
112 KOG2562 Protein phosphatase 2 85.6 1.1 2.5E-05 40.1 4.1 65 77-142 311-379 (493)
113 KOG4347 GTPase-activating prot 85.1 1.1 2.4E-05 41.7 3.9 55 79-135 557-611 (671)
114 KOG0998 Synaptic vesicle prote 85.0 0.36 7.8E-06 46.4 0.8 71 71-144 277-347 (847)
115 PF05042 Caleosin: Caleosin re 84.9 4 8.6E-05 32.1 6.4 65 76-141 95-165 (174)
116 KOG3449 60S acidic ribosomal p 84.4 5.2 0.00011 29.2 6.4 55 78-138 2-56 (112)
117 KOG2871 Uncharacterized conser 83.9 1.2 2.6E-05 39.1 3.4 67 70-137 302-369 (449)
118 cd05833 Ribosomal_P2 Ribosomal 83.7 5.9 0.00013 28.7 6.5 55 79-139 3-57 (109)
119 KOG1029 Endocytic adaptor prot 83.5 7.7 0.00017 37.3 8.6 67 74-143 10-78 (1118)
120 PLN02228 Phosphoinositide phos 82.6 6 0.00013 36.6 7.5 64 75-141 22-91 (567)
121 PF09069 EF-hand_3: EF-hand; 82.5 12 0.00027 26.2 7.5 61 77-141 3-74 (90)
122 PF10591 SPARC_Ca_bdg: Secrete 82.0 0.36 7.9E-06 35.1 -0.4 52 107-160 48-103 (113)
123 PLN02952 phosphoinositide phos 81.9 7 0.00015 36.4 7.8 65 76-141 37-109 (599)
124 KOG3555 Ca2+-binding proteogly 81.7 1.9 4.1E-05 37.6 3.7 80 77-158 211-295 (434)
125 KOG2391 Vacuolar sorting prote 80.6 4.5 9.7E-05 35.1 5.6 21 12-32 140-160 (365)
126 KOG4347 GTPase-activating prot 79.9 3.6 7.9E-05 38.4 5.2 48 110-159 552-605 (671)
127 KOG1955 Ral-GTPase effector RA 79.8 1.1 2.4E-05 40.8 1.8 38 76-113 264-306 (737)
128 cd04411 Ribosomal_P1_P2_L12p R 79.6 14 0.0003 26.6 7.1 39 94-138 17-55 (105)
129 PLN02222 phosphoinositide phos 79.5 7.1 0.00015 36.2 7.0 64 76-141 24-89 (581)
130 PF11116 DUF2624: Protein of u 78.8 18 0.0004 25.2 7.2 60 93-154 14-82 (85)
131 PLN02952 phosphoinositide phos 78.7 8.6 0.00019 35.8 7.2 52 90-143 13-66 (599)
132 KOG4403 Cell surface glycoprot 77.9 6.8 0.00015 35.2 6.0 61 77-142 68-129 (575)
133 KOG0041 Predicted Ca2+-binding 77.6 6.9 0.00015 31.8 5.5 67 72-139 130-200 (244)
134 PF07308 DUF1456: Protein of u 77.4 11 0.00023 25.1 5.6 49 94-143 14-62 (68)
135 PLN02230 phosphoinositide phos 76.7 13 0.00028 34.7 7.7 65 76-141 28-101 (598)
136 PF12174 RST: RCD1-SRO-TAF4 (R 76.7 4.1 8.8E-05 27.3 3.4 35 108-143 20-54 (70)
137 PLN00138 large subunit ribosom 76.3 14 0.0003 27.0 6.5 53 79-137 3-55 (113)
138 PRK06402 rpl12p 50S ribosomal 75.8 19 0.00041 26.0 7.0 49 82-138 7-55 (106)
139 COG2058 RPP1A Ribosomal protei 75.3 14 0.00031 26.8 6.1 40 93-138 16-55 (109)
140 PF09068 EF-hand_2: EF hand; 74.4 9.8 0.00021 28.2 5.3 65 76-141 40-124 (127)
141 KOG0040 Ca2+-binding actin-bun 74.0 7.3 0.00016 40.1 5.7 50 109-160 2246-2311(2399)
142 PLN02223 phosphoinositide phos 73.9 14 0.00031 34.0 7.2 66 74-141 13-91 (537)
143 PF09373 PMBR: Pseudomurein-bi 73.3 7.7 0.00017 21.9 3.6 21 128-148 2-22 (33)
144 cd07313 terB_like_2 tellurium 71.5 7 0.00015 27.0 3.8 52 90-142 12-65 (104)
145 PF09279 EF-hand_like: Phospho 67.2 13 0.00028 24.7 4.3 39 114-155 1-47 (83)
146 KOG0998 Synaptic vesicle prote 66.1 35 0.00077 33.1 8.4 71 69-143 121-191 (847)
147 PHA02105 hypothetical protein 65.6 9.2 0.0002 24.9 3.0 51 93-143 4-58 (68)
148 cd00086 homeodomain Homeodomai 63.6 20 0.00043 21.7 4.4 45 71-122 7-51 (59)
149 PF11593 Med3: Mediator comple 62.1 14 0.00029 32.5 4.4 13 129-141 41-53 (379)
150 PF01885 PTS_2-RNA: RNA 2'-pho 61.5 17 0.00036 28.7 4.5 38 87-124 26-63 (186)
151 cd05831 Ribosomal_P1 Ribosomal 60.8 29 0.00063 24.8 5.3 44 89-138 13-56 (103)
152 KOG3077 Uncharacterized conser 60.3 54 0.0012 27.4 7.5 68 75-143 62-130 (260)
153 PRK00819 RNA 2'-phosphotransfe 59.7 19 0.00042 28.2 4.6 37 88-124 28-64 (179)
154 COG4103 Uncharacterized protei 59.2 22 0.00048 27.2 4.6 58 81-141 34-93 (148)
155 PF03672 UPF0154: Uncharacteri 58.5 25 0.00054 23.2 4.2 43 81-124 20-62 (64)
156 PRK00523 hypothetical protein; 58.3 27 0.00059 23.5 4.4 44 80-124 27-70 (72)
157 PF08461 HTH_12: Ribonuclease 58.2 13 0.00029 24.2 3.0 36 89-124 9-44 (66)
158 PHA00649 hypothetical protein 58.1 32 0.0007 23.2 4.7 30 118-148 22-51 (83)
159 TIGR01639 P_fal_TIGR01639 Plas 58.1 44 0.00096 21.4 5.4 25 93-117 9-33 (61)
160 COG2979 Uncharacterized protei 57.3 55 0.0012 26.7 6.8 48 88-140 121-169 (225)
161 TIGR02675 tape_meas_nterm tape 56.6 10 0.00023 25.3 2.3 17 89-105 26-42 (75)
162 PF01023 S_100: S-100/ICaBP ty 56.6 27 0.00058 21.0 3.9 29 77-105 6-36 (44)
163 TIGR01848 PHA_reg_PhaR polyhyd 56.5 40 0.00087 24.5 5.4 54 85-139 11-74 (107)
164 PF10437 Lip_prot_lig_C: Bacte 56.4 23 0.00051 23.8 4.1 44 95-140 43-86 (86)
165 KOG0039 Ferric reductase, NADH 56.3 18 0.00039 33.8 4.5 67 74-142 15-89 (646)
166 PF08976 DUF1880: Domain of un 56.1 9.3 0.0002 28.2 2.1 32 109-141 3-34 (118)
167 PF14513 DAG_kinase_N: Diacylg 55.8 10 0.00022 28.6 2.4 51 90-142 4-60 (138)
168 PF04876 Tenui_NCP: Tenuivirus 55.8 46 0.00099 25.8 5.8 69 77-146 78-164 (175)
169 cd05832 Ribosomal_L12p Ribosom 54.4 80 0.0017 22.8 6.8 49 82-138 7-55 (106)
170 PF02761 Cbl_N2: CBL proto-onc 54.0 72 0.0016 22.2 8.7 51 90-141 19-69 (85)
171 COG3763 Uncharacterized protei 53.7 41 0.00088 22.6 4.6 44 80-124 26-69 (71)
172 PF14513 DAG_kinase_N: Diacylg 52.0 40 0.00088 25.4 5.0 35 90-124 45-80 (138)
173 TIGR03573 WbuX N-acetyl sugar 52.0 30 0.00064 29.6 4.9 42 91-139 300-341 (343)
174 PF12307 DUF3631: Protein of u 51.2 95 0.0021 24.6 7.2 47 75-124 101-157 (184)
175 PF13551 HTH_29: Winged helix- 48.8 66 0.0014 21.8 5.5 52 71-122 58-111 (112)
176 KOG1265 Phospholipase C [Lipid 48.8 72 0.0016 31.5 7.1 64 77-141 221-298 (1189)
177 TIGR00135 gatC glutamyl-tRNA(G 48.4 51 0.0011 22.6 4.8 29 94-122 1-29 (93)
178 COG5502 Uncharacterized conser 48.0 1.2E+02 0.0026 22.9 7.4 69 77-151 57-132 (135)
179 KOG0917 Uncharacterized conser 47.8 1.8E+02 0.0039 24.9 10.1 29 3-31 191-219 (338)
180 PF09068 EF-hand_2: EF hand; 47.8 31 0.00068 25.5 3.8 28 78-105 98-125 (127)
181 PRK01844 hypothetical protein; 47.5 48 0.001 22.4 4.3 44 80-124 26-69 (72)
182 PF07879 PHB_acc_N: PHB/PHA ac 47.5 36 0.00078 22.5 3.6 39 84-122 10-58 (64)
183 KOG0169 Phosphoinositide-speci 46.9 76 0.0017 30.4 7.0 62 77-143 172-233 (746)
184 PF14178 YppF: YppF-like prote 46.3 81 0.0018 20.5 5.6 17 129-145 35-51 (60)
185 PF14069 SpoVIF: Stage VI spor 46.0 80 0.0017 21.6 5.3 50 90-141 24-77 (79)
186 KOG0506 Glutaminase (contains 45.4 30 0.00064 31.7 3.9 59 82-140 91-156 (622)
187 TIGR03685 L21P_arch 50S riboso 45.4 1.1E+02 0.0024 21.9 6.8 49 82-138 7-55 (105)
188 PF11848 DUF3368: Domain of un 44.5 39 0.00084 20.5 3.3 33 90-122 14-47 (48)
189 cd07316 terB_like_DjlA N-termi 42.6 87 0.0019 21.3 5.3 51 90-141 12-63 (106)
190 PRK00034 gatC aspartyl/glutamy 41.8 77 0.0017 21.7 4.9 31 93-123 2-32 (95)
191 PF12419 DUF3670: SNF2 Helicas 41.7 44 0.00096 24.9 3.9 49 90-139 80-138 (141)
192 PF08784 RPA_C: Replication pr 41.5 42 0.00091 23.2 3.5 42 77-124 50-91 (102)
193 PRK09430 djlA Dna-J like membr 39.5 65 0.0014 26.7 4.9 51 89-141 67-119 (267)
194 PF15079 DUF4546: Domain of un 38.5 45 0.00097 26.3 3.5 28 113-144 68-95 (205)
195 PF04391 DUF533: Protein of un 38.5 60 0.0013 25.7 4.4 48 88-140 90-138 (188)
196 KOG4070 Putative signal transd 38.2 51 0.0011 25.7 3.7 66 78-144 13-87 (180)
197 KOG2301 Voltage-gated Ca2+ cha 37.9 28 0.0006 36.2 2.8 67 71-139 1411-1481(1592)
198 PF11363 DUF3164: Protein of u 37.7 99 0.0022 24.6 5.5 40 101-141 107-146 (195)
199 PF13276 HTH_21: HTH-like doma 37.1 1E+02 0.0022 19.0 4.9 36 89-124 16-52 (60)
200 KOG4286 Dystrophin-like protei 36.8 78 0.0017 30.6 5.4 64 76-141 469-532 (966)
201 KOG4301 Beta-dystrobrevin [Cyt 36.4 62 0.0013 28.5 4.3 58 83-142 116-173 (434)
202 COG2818 Tag 3-methyladenine DN 36.2 25 0.00054 28.0 1.8 41 77-117 55-95 (188)
203 PF00404 Dockerin_1: Dockerin 36.1 61 0.0013 16.5 2.7 13 126-138 3-15 (21)
204 COG5611 Predicted nucleic-acid 35.6 1.9E+02 0.004 21.6 6.6 63 78-141 22-86 (130)
205 PF05099 TerB: Tellurite resis 35.3 26 0.00056 25.3 1.7 51 89-140 35-87 (140)
206 PF06239 ECSIT: Evolutionarily 34.7 1.4E+02 0.003 24.6 5.9 80 77-162 51-137 (228)
207 PF01325 Fe_dep_repress: Iron 34.7 42 0.0009 21.4 2.4 51 73-133 4-54 (60)
208 PF06207 DUF1002: Protein of u 33.4 70 0.0015 26.1 4.1 45 94-139 150-200 (225)
209 PF03556 Cullin_binding: Culli 32.9 1.4E+02 0.0031 21.6 5.3 78 82-161 29-106 (117)
210 PF04614 Pex19: Pex19 protein 32.7 94 0.002 25.5 4.8 62 78-146 147-208 (248)
211 KOG4578 Uncharacterized conser 32.5 27 0.0006 30.4 1.6 27 79-105 372-398 (421)
212 PF13592 HTH_33: Winged helix- 32.4 80 0.0017 19.8 3.5 34 91-124 2-36 (60)
213 PHA02335 hypothetical protein 32.1 69 0.0015 23.4 3.4 12 93-104 24-35 (118)
214 PF12995 DUF3879: Domain of un 31.9 1E+02 0.0022 24.2 4.5 56 94-159 2-57 (186)
215 TIGR01529 argR_whole arginine 31.5 1.1E+02 0.0023 23.1 4.5 36 89-124 12-47 (146)
216 PF01316 Arg_repressor: Argini 31.4 91 0.002 20.7 3.7 31 93-123 19-49 (70)
217 PF12631 GTPase_Cys_C: Catalyt 31.0 69 0.0015 21.0 3.1 44 79-122 25-72 (73)
218 PF12108 SF3a60_bindingd: Spli 30.8 61 0.0013 17.8 2.3 19 134-153 7-25 (28)
219 cd07176 terB tellurite resista 30.7 30 0.00064 23.7 1.3 16 90-105 15-30 (111)
220 TIGR00624 tag DNA-3-methyladen 30.5 33 0.00071 27.0 1.7 44 77-120 53-96 (179)
221 KOG4004 Matricellular protein 30.1 29 0.00063 28.3 1.3 27 77-103 222-248 (259)
222 PRK09462 fur ferric uptake reg 29.9 1.3E+02 0.0029 22.2 4.9 42 81-122 21-62 (148)
223 smart00389 HOX Homeodomain. DN 29.9 1.2E+02 0.0027 17.9 4.0 44 71-121 7-50 (56)
224 COG1859 KptA RNA:NAD 2'-phosph 29.8 76 0.0017 25.7 3.6 37 88-124 54-90 (211)
225 PF11207 DUF2989: Protein of u 29.7 2.1E+02 0.0047 23.0 6.2 64 76-142 122-187 (203)
226 PF00427 PBS_linker_poly: Phyc 29.3 42 0.00092 25.1 2.0 20 128-147 42-61 (131)
227 PF15565 Imm16: Immunity prote 29.2 1.5E+02 0.0032 21.4 4.7 29 96-124 15-43 (106)
228 KOG4065 Uncharacterized conser 29.1 39 0.00085 25.2 1.7 24 79-102 119-142 (144)
229 PRK12821 aspartyl/glutamyl-tRN 29.0 1.4E+02 0.0031 27.1 5.5 31 92-122 387-417 (477)
230 PF09066 B2-adapt-app_C: Beta2 28.9 35 0.00076 24.0 1.4 18 127-144 3-20 (114)
231 KOG1265 Phospholipase C [Lipid 28.4 3E+02 0.0064 27.5 7.7 29 113-142 221-249 (1189)
232 PRK10353 3-methyl-adenine DNA 28.0 29 0.00063 27.5 1.0 44 77-120 54-97 (187)
233 PF01498 HTH_Tnp_Tc3_2: Transp 27.9 75 0.0016 20.3 2.8 34 90-123 10-43 (72)
234 PF09069 EF-hand_3: EF-hand; 27.9 1.7E+02 0.0037 20.4 4.8 31 112-144 2-32 (90)
235 PRK00441 argR arginine repress 27.7 96 0.0021 23.5 3.7 41 90-130 15-58 (149)
236 KOG4403 Cell surface glycoprot 27.4 39 0.00085 30.5 1.7 33 108-141 63-95 (575)
237 PF09494 Slx4: Slx4 endonuclea 27.4 1.2E+02 0.0025 19.5 3.6 27 93-119 24-54 (64)
238 PF07261 DnaB_2: Replication i 27.4 1.7E+02 0.0037 18.6 5.0 60 83-148 2-62 (77)
239 COG4086 Predicted secreted pro 26.8 3E+02 0.0066 23.4 6.8 41 94-135 210-254 (299)
240 smart00862 Trans_reg_C Transcr 26.6 1.7E+02 0.0037 18.3 4.6 14 92-105 23-36 (78)
241 cd08327 CARD_RAIDD Caspase act 26.5 2.3E+02 0.005 19.8 5.6 53 90-148 32-84 (94)
242 PF00486 Trans_reg_C: Transcri 26.3 1.5E+02 0.0032 18.7 4.1 31 89-119 20-50 (77)
243 PRK14981 DNA-directed RNA poly 26.2 93 0.002 22.4 3.3 33 109-146 78-110 (112)
244 PF02337 Gag_p10: Retroviral G 26.2 2.2E+02 0.0047 19.9 5.0 43 97-139 12-58 (90)
245 PRK08181 transposase; Validate 25.9 2.2E+02 0.0047 23.6 5.9 47 91-141 4-50 (269)
246 PRK03341 arginine repressor; P 25.3 3.1E+02 0.0067 21.3 6.3 43 89-131 25-70 (168)
247 KOG2303 Predicted NAD synthase 25.2 1.3E+02 0.0028 28.0 4.6 33 74-106 517-554 (706)
248 KOG1923 Rac1 GTPase effector F 24.4 2.7E+02 0.0058 27.0 6.6 9 96-104 403-411 (830)
249 KOG4064 Cysteine dioxygenase C 24.2 1.1E+02 0.0024 23.9 3.5 32 93-124 11-44 (196)
250 cd01671 CARD Caspase activatio 24.0 1.8E+02 0.0038 18.7 4.1 46 90-141 24-69 (80)
251 COG1158 Rho Transcription term 23.2 1.2E+02 0.0026 26.9 3.8 45 80-124 354-407 (422)
252 PF03979 Sigma70_r1_1: Sigma-7 23.1 96 0.0021 20.8 2.7 44 77-124 7-50 (82)
253 PF13075 DUF3939: Protein of u 23.0 13 0.00028 28.2 -1.8 11 94-104 10-20 (140)
254 KOG1785 Tyrosine kinase negati 22.6 2.1E+02 0.0045 25.9 5.2 48 89-137 186-233 (563)
255 PTZ00315 2'-phosphotransferase 22.6 1.5E+02 0.0032 27.8 4.6 38 87-124 399-436 (582)
256 KOG4286 Dystrophin-like protei 22.4 1.1E+02 0.0023 29.7 3.7 79 79-159 422-520 (966)
257 PF09412 XendoU: Endoribonucle 22.3 1.5E+02 0.0034 24.7 4.3 77 73-153 60-138 (265)
258 cd07153 Fur_like Ferric uptake 22.3 2.5E+02 0.0054 19.3 4.9 33 90-122 13-45 (116)
259 KOG1908 Ribonuclease inhibitor 22.0 1.8E+02 0.0039 22.1 4.2 26 81-107 63-88 (165)
260 TIGR01679 bact_FAD_ox FAD-link 21.7 1.2E+02 0.0026 26.6 3.7 45 114-159 361-408 (419)
261 KOG2278 RNA:NAD 2'-phosphotran 21.6 1E+02 0.0022 24.6 2.9 39 86-124 27-65 (207)
262 PF08708 PriCT_1: Primase C te 21.6 2.3E+02 0.0049 18.0 4.4 30 115-145 38-67 (71)
263 PLN03138 Protein TOC75; Provis 21.5 2.6E+02 0.0057 27.2 6.1 52 93-147 251-314 (796)
264 PF01475 FUR: Ferric uptake re 21.5 1.9E+02 0.0041 20.3 4.1 32 91-122 21-52 (120)
265 PF09336 Vps4_C: Vps4 C termin 21.3 1.4E+02 0.003 19.1 3.1 26 93-118 29-54 (62)
266 PF15144 DUF4576: Domain of un 21.1 33 0.00071 23.7 0.1 43 90-134 37-79 (88)
267 PF02885 Glycos_trans_3N: Glyc 21.0 2.3E+02 0.0051 17.9 5.2 12 93-104 14-25 (66)
268 cd08330 CARD_ASC_NALP1 Caspase 21.0 2.3E+02 0.0051 19.0 4.3 48 90-143 26-73 (82)
269 PF02864 STAT_bind: STAT prote 20.8 3.4E+02 0.0073 22.6 6.0 48 91-138 176-231 (254)
270 PF05419 GUN4: GUN4-like ; In 20.6 52 0.0011 24.5 1.1 54 81-143 20-73 (132)
271 PF03874 RNA_pol_Rpb4: RNA pol 20.5 1.1E+02 0.0024 21.6 2.7 46 94-146 71-116 (117)
272 PF05517 p25-alpha: p25-alpha 20.4 1.7E+02 0.0037 22.1 3.9 33 74-106 38-70 (154)
273 PF00619 CARD: Caspase recruit 20.1 2.1E+02 0.0044 18.6 3.9 47 90-142 27-73 (85)
274 PF06648 DUF1160: Protein of u 20.1 2.2E+02 0.0048 21.1 4.3 41 77-120 37-78 (122)
No 1
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-19 Score=144.58 Aligned_cols=89 Identities=43% Similarity=0.697 Sum_probs=83.7
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
..++ +..++..+|..+|+|++|+|+.+||+++|.. .+..++.++|+.||..+|. +.+|+|+++||..||+.|++||.
T Consensus 51 ~~~~-~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i~~Wr~ 128 (221)
T KOG0037|consen 51 RQPP-TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR-DNSGTIGFKEFKALWKYINQWRN 128 (221)
T ss_pred ccCc-ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-CCCCccCHHHHHHHHHHHHHHHH
Confidence 3445 9999999999999999999999999999994 5679999999999999999 99999999999999999999999
Q ss_pred HhcchhcCCCCCC
Q 031234 149 SILTDYSLNFQNP 161 (163)
Q Consensus 149 ~iF~~~D~D~~~~ 161 (163)
+|+.||+|+++.
T Consensus 129 -vF~~~D~D~SG~ 140 (221)
T KOG0037|consen 129 -VFRTYDRDRSGT 140 (221)
T ss_pred -HHHhcccCCCCc
Confidence 999999999985
No 2
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.56 E-value=1.7e-14 Score=115.47 Aligned_cols=82 Identities=28% Similarity=0.271 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhcchhcC
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRVSILTDYSL 156 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~~iF~~~D~ 156 (163)
..|+++|+.+|+|++|.|+..||+++|..+|++|+.+.++.|++++|. ..+|.|.|++|+.+++.|+.+.+ +|+++|+
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~-~~~g~i~FD~FI~ccv~L~~lt~-~Fr~~D~ 201 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDR-FGGGRIDFDDFIQCCVVLQRLTE-AFRRRDT 201 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcc-ccCCceeHHHHHHHHHHHHHHHH-HHHHhcc
Confidence 679999999999999999999999999999999999999999999997 66999999999999999999999 9999999
Q ss_pred CCCC
Q 031234 157 NFQN 160 (163)
Q Consensus 157 D~~~ 160 (163)
+..+
T Consensus 202 ~q~G 205 (221)
T KOG0037|consen 202 AQQG 205 (221)
T ss_pred ccce
Confidence 8764
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=1e-13 Score=105.16 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=79.6
Q ss_pred CCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH---------
Q 031234 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------- 143 (163)
Q Consensus 73 p~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l--------- 143 (163)
.....+++++|+.+|++++|+|+..||..+|+.+|...+..+++.++..+|. +++|.|+++||+.++...
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~-dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDL-DGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHhhhcccccccc
Confidence 3456789999999999999999999999999999999999999999999999 999999999999998754
Q ss_pred --HHHHHHhcchhcCCCCC
Q 031234 144 --GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 --~~~r~~iF~~~D~D~~~ 160 (163)
+.+++ +|+.||+|+.+
T Consensus 83 ~~~el~e-aF~~fD~d~~G 100 (151)
T KOG0027|consen 83 SSEELKE-AFRVFDKDGDG 100 (151)
T ss_pred cHHHHHH-HHHHHccCCCC
Confidence 27899 99999999876
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.43 E-value=8e-13 Score=102.05 Aligned_cols=90 Identities=21% Similarity=0.246 Sum_probs=82.7
Q ss_pred CCCCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----
Q 031234 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---- 143 (163)
Q Consensus 68 ~~~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l---- 143 (163)
.+.|+..+.++|+++|..+|+|++|.|+..||..+|+.+|...+..++..|+..++. +.+.|+|.+|+.++...
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--CCCccCHHHHHHHHHHHhccC
Confidence 455888889999999999999999999999999999999999999999999999996 67899999999998764
Q ss_pred ---HHHHHHhcchhcCCCCC
Q 031234 144 ---GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 ---~~~r~~iF~~~D~D~~~ 160 (163)
++++. +|+.||+|+.+
T Consensus 89 ~~~Eel~~-aF~~fD~d~dG 107 (160)
T COG5126 89 DKEEELRE-AFKLFDKDHDG 107 (160)
T ss_pred CcHHHHHH-HHHHhCCCCCc
Confidence 57999 99999999875
No 5
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.39 E-value=1.6e-12 Score=91.42 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcC-CCCCceeHHHHHHHHHh-cCCCCCH-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDR-DRSGFIDENELQQALSS-GYQRFSL-STIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 76 ~~~l~~~F~~~D~-d~sG~Is~~EL~~aL~~-~g~~ls~-~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
...+..+|+.||+ +++|+|+..||+.+|+. ++..++. +.++.||+.+|. |+||.|+|+||+.++..|-
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~-d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDV-NQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCC-CCCCCCcHHHHHHHHHHHH
Confidence 4578999999999 99999999999999998 8888888 999999999999 9999999999999988763
No 6
>PTZ00183 centrin; Provisional
Probab=99.39 E-value=3.4e-12 Score=95.47 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCCCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----
Q 031234 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---- 143 (163)
Q Consensus 68 ~~~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l---- 143 (163)
+..+.+....+++.+|..+|.+++|.|+.+||..+|+.++..++...++.++..+|. +++|.|+++||+.++..+
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDK-DGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcEeHHHHHHHHHHHhcCC
Confidence 344777888999999999999999999999999999988888899999999999999 999999999999987653
Q ss_pred ---HHHHHHhcchhcCCCCC
Q 031234 144 ---GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 ---~~~r~~iF~~~D~D~~~ 160 (163)
..++. +|+.+|.|+.+
T Consensus 87 ~~~~~l~~-~F~~~D~~~~G 105 (158)
T PTZ00183 87 DPREEILK-AFRLFDDDKTG 105 (158)
T ss_pred CcHHHHHH-HHHHhCCCCCC
Confidence 36888 99999999876
No 7
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.35 E-value=4.8e-12 Score=82.72 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHH----HHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLS----TIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~----~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
.|+++|+.+|+|++|+|+.+||+.+++.++..+..+ .++.++..+|. +++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDT-DGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTT-TSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-CCcCCCcHHHHhccC
Confidence 478999999999999999999999999988766554 45555999999 999999999999875
No 8
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.34 E-value=4.4e-12 Score=97.94 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 73 p~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
....++++++|+.||+|++|+|+..||+.+|+.+|..+++++|+.|++.++. +++|.|+|++|+.++.
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~-d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDE-DGDGEIDYEEFKKLIK 155 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCC-CCCceEeHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999999999999 9999999999999875
No 9
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.31 E-value=1.4e-11 Score=86.29 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 76 ~~~l~~~F~~~D-~d~sG-~Is~~EL~~aL~~-----~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
...++++|+.+| +|++| .|+.+||+.+|+. ++...+.++++.+|+.+|. +++|+|+|+||+.++..+-
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~-n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDS-DGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHH
Confidence 467999999998 79999 6999999999998 8888999999999999999 9999999999999887664
No 10
>PTZ00184 calmodulin; Provisional
Probab=99.31 E-value=1.6e-11 Score=90.52 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-------
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------- 143 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------- 143 (163)
+.....++++..|..+|.+++|.|+.+||..+|..++..+..+.++.++..+|. +++|.|+++||+.++..+
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA-DGNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCc-CCCCcCcHHHHHHHHHHhccCCcHH
Confidence 344556789999999999999999999999999988888889999999999999 999999999999987643
Q ss_pred HHHHHHhcchhcCCCCC
Q 031234 144 GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 ~~~r~~iF~~~D~D~~~ 160 (163)
..++. +|+.+|.|+.+
T Consensus 84 ~~~~~-~F~~~D~~~~g 99 (149)
T PTZ00184 84 EEIKE-AFKVFDRDGNG 99 (149)
T ss_pred HHHHH-HHHhhCCCCCC
Confidence 46888 99999998875
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=1.8e-11 Score=86.37 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 72 pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
.+.+..+++++|+.+|+|++|.|+.+||+.+|+..+ ++.++++.++..+|. +++|.|+++||+.++..+.++..
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~-~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADI-DNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHHHHHHHc
Confidence 445667899999999999999999999999999864 789999999999999 99999999999999998877764
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=2.6e-11 Score=91.96 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
..++++++|+.+|+|++|+|+..||+.+|..+|..++.++++.+++.+|. +++|.|+|+||+.+|.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~-d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDV-DGDGKVNFEEFVKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCC-CCCCeEeHHHHHHHHh
Confidence 45699999999999999999999999999999999999999999999999 9999999999999875
No 13
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.23 E-value=1.1e-10 Score=81.63 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHh-cC----CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-GY----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 76 ~~~l~~~F~~~D-~d~sG-~Is~~EL~~aL~~-~g----~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
.++++++|+.+| ++++| +|+..||+.+|+. ++ ...+.+.++.||..+|. +++|.|+|+||+.++..+-....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~-d~~G~I~f~eF~~l~~~~~~~~~ 86 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDE-NGDGEVDFQEFVVLVAALTVACN 86 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC-CCCCcCcHHHHHHHHHHHHHHHH
Confidence 467999999997 99999 5999999999985 44 35688999999999999 99999999999999887755443
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.22 E-value=6.8e-11 Score=83.16 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhcC-CC-CCceeHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDR-DR-SGFIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145 (163)
Q Consensus 76 ~~~l~~~F~~~D~-d~-sG~Is~~EL~~aL~~-----~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~ 145 (163)
..+|+.+|..+|. |+ +|+|+.+||+.+|+. ++..++.++++.|+..+|. +++|.|+|+||+.++..+.-
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~-~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQ-NRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHHH
Confidence 4679999999997 87 799999999999985 4668899999999999999 99999999999999886643
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.21 E-value=9e-11 Score=82.78 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHh-c----CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-G----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146 (163)
Q Consensus 76 ~~~l~~~F~~~D-~d~sG-~Is~~EL~~aL~~-~----g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~ 146 (163)
...++++|+.+| +|++| +|+..||+.+|+. + ....+...++.|+..+|. +++|.|+|+||+.++..|-..
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~-n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS-NKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHHH
Confidence 457888999999 78998 5999999999975 3 334577899999999999 999999999999998877443
No 16
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=9.9e-11 Score=76.01 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=56.7
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 80 ~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
+++|+.+|++++|.|+.+||+.+|+..+ ++.++++.++..+|. +++|.|+++||+.+|..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~-~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADT-DKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcC-CCCCcCCHHHHHHHHHHHH
Confidence 6789999999999999999999999876 488999999999999 9999999999999887653
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.17 E-value=2.2e-10 Score=80.18 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcC-CC-CCceeHHHHHHHHH---hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 031234 77 PDVIRSFEMVDR-DR-SGFIDENELQQALS---SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145 (163)
Q Consensus 77 ~~l~~~F~~~D~-d~-sG~Is~~EL~~aL~---~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~ 145 (163)
..+..+|+.+|. ++ +|+|+.+||+.+|+ .+|..++.+++++|++.+|. +++|+|+|+||+.++..|-.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~-d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR-NKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHHHH
Confidence 468889999997 56 89999999999997 36899999999999999999 99999999999999887644
No 18
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=2.2e-10 Score=88.15 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-------
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------- 143 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------- 143 (163)
......++++.+|..||.+++|+|+..||..+++++|+....+++..|+..+|+ ++.|.|+|++|+.++...
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk-~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDK-EGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhh-ccCceechHHHHHHHHHHHhccCcH
Confidence 566667899999999999999999999999999999999999999999999999 999999999999987642
Q ss_pred HHHHHHhcchhcCCCCC
Q 031234 144 GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 ~~~r~~iF~~~D~D~~~ 160 (163)
..++. +|+.+|.|+.+
T Consensus 106 eEi~~-afrl~D~D~~G 121 (172)
T KOG0028|consen 106 EEIKK-AFRLFDDDKTG 121 (172)
T ss_pred HHHHH-HHHcccccCCC
Confidence 57888 99999998776
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.13 E-value=2.5e-10 Score=78.91 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHhcC--CCCCceeHHHHHHHHHh-cCCC----CCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 75 THPDVIRSFEMVDR--DRSGFIDENELQQALSS-GYQR----FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 75 ~~~~l~~~F~~~D~--d~sG~Is~~EL~~aL~~-~g~~----ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+..+++++|..+|+ +++|.|+.+||+.+|+. ++.. .+.+.++.|+..+|. +++|.|+|+||+.++..+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~-~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDV-NKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc-CCCCcCcHHHHHHHHHHH
Confidence 45679999999999 89999999999999985 4544 458999999999999 999999999999988765
No 20
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.09 E-value=3.5e-10 Score=86.59 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=80.1
Q ss_pred CCCCCCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-H-
Q 031234 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-L- 143 (163)
Q Consensus 66 ~~~~~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~-l- 143 (163)
.-++.|...++++++++|...|.|++|.|+.++|+..|.++|...+++++..||.. ..|-|+|.-|+.++.. |
T Consensus 21 nvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E-----a~gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE-----APGPINFTVFLTMFGEKLN 95 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-----CCCCeeHHHHHHHHHHHhc
Confidence 34667899999999999999999999999999999999999999999999999974 4567999999999874 3
Q ss_pred -----HHHHHHhcchhcCCCCCC
Q 031234 144 -----GQWRVSILTDYSLNFQNP 161 (163)
Q Consensus 144 -----~~~r~~iF~~~D~D~~~~ 161 (163)
..++. +|+.||.++.+.
T Consensus 96 gtdpe~~I~~-AF~~FD~~~~G~ 117 (171)
T KOG0031|consen 96 GTDPEEVILN-AFKTFDDEGSGK 117 (171)
T ss_pred CCCHHHHHHH-HHHhcCccCCCc
Confidence 46888 999999998775
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=1.6e-09 Score=76.00 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=59.3
Q ss_pred hHHHHHHHHH-hcCCCCC-ceeHHHHHHHHHhc-----CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEM-VDRDRSG-FIDENELQQALSSG-----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 76 ~~~l~~~F~~-~D~d~sG-~Is~~EL~~aL~~~-----g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
...|..+|+. +|++++| +|+.+||+.+|... +...+..+++.|++.+|. ++||.|+|+||+.++..|-
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~-d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDL-NSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHHH
Confidence 4578999999 7788876 99999999999954 456778999999999999 9999999999999988764
No 22
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.04 E-value=1.2e-09 Score=68.90 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCCceeHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~-ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
++|.|+.+||+.+|..+|.. ++.++++.|+..+|. +++|.|+++||+.+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~-~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDT-DGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTT-SSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhccc-CCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 999999999999999 99999999999998864
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.02 E-value=1.6e-09 Score=67.34 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
++.+|..+|.+++|.|+.+|+..+++.++...+.+.++.++..++. +++|.|+++||+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDK-DGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCeEeHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999 999999999998764
No 24
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.97 E-value=3.4e-09 Score=79.97 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=79.8
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHH----
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPH--DSLRIGPKEFADLWSCL---- 143 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d--~dG~I~~eEF~~l~~~l---- 143 (163)
.+++....+++++|..||+.++|+|+...+..+|+.+|.+.++.+|.+.+...+. + .--+|+|++|+-++..|
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~-~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKR-REMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCccc-chhhhhhhhHHHHHHHHHHHHhcc
Confidence 4677888999999999999999999999999999999999999999999988876 4 33689999999998876
Q ss_pred -----HHHHHHhcchhcCCCCCC
Q 031234 144 -----GQWRVSILTDYSLNFQNP 161 (163)
Q Consensus 144 -----~~~r~~iF~~~D~D~~~~ 161 (163)
+++.+ .++.||+++.+.
T Consensus 83 ~q~t~edfve-gLrvFDkeg~G~ 104 (152)
T KOG0030|consen 83 DQGTYEDFVE-GLRVFDKEGNGT 104 (152)
T ss_pred ccCcHHHHHH-HHHhhcccCCcc
Confidence 45777 889999998874
No 25
>PTZ00183 centrin; Provisional
Probab=98.95 E-value=4.6e-09 Score=78.38 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH------HHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRV 148 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------~~~r~ 148 (163)
...+..+|..+|.+++|.|+.+||..++... ......+.++.+|..+|. +++|.|+.+||+.++..+ ..++.
T Consensus 52 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~l~~~~~~~ 130 (158)
T PTZ00183 52 KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDD-DKTGKISLKNLKRVAKELGETITDEELQE 130 (158)
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 4567777777777777777777777766532 334455667777777777 777777777777766543 34666
Q ss_pred HhcchhcCCCCC
Q 031234 149 SILTDYSLNFQN 160 (163)
Q Consensus 149 ~iF~~~D~D~~~ 160 (163)
+|..+|.|+.+
T Consensus 131 -~~~~~d~~~~g 141 (158)
T PTZ00183 131 -MIDEADRNGDG 141 (158)
T ss_pred -HHHHhCCCCCC
Confidence 77777766543
No 26
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=5.3e-09 Score=80.55 Aligned_cols=66 Identities=14% Similarity=0.259 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+.++++.+|+.+|.|++|+|+..+|+.+.+.+|.++++++++.||..+|. +++|.|+-+||..+++
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~-d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADR-DGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcc-cccccccHHHHHHHHh
Confidence 55677777777777777777777777777777777777777777777777 7777777777776654
No 27
>PTZ00184 calmodulin; Provisional
Probab=98.89 E-value=1e-08 Score=75.40 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH------HHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRV 148 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------~~~r~ 148 (163)
.+.+..+|+.+|.+++|.|+.+||..+|... ........++.+|..+|. +++|.|+.+||..++..+ ..+..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 124 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDR-DGNGFISAAELRHVMTNLGEKLTDEEVDE 124 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCC-CCCCeEeHHHHHHHHHHHCCCCCHHHHHH
Confidence 3456666666666666666666666665532 223334455666666666 666666666666655443 33455
Q ss_pred HhcchhcCCCCC
Q 031234 149 SILTDYSLNFQN 160 (163)
Q Consensus 149 ~iF~~~D~D~~~ 160 (163)
+|..+|.++.+
T Consensus 125 -~~~~~d~~~~g 135 (149)
T PTZ00184 125 -MIREADVDGDG 135 (149)
T ss_pred -HHHhcCCCCCC
Confidence 66666655543
No 28
>PLN02964 phosphatidylserine decarboxylase
Probab=98.88 E-value=6.9e-09 Score=95.16 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcC-CCCCHHH---HHHHHHHhcCCCCCCcccHHHHHHHHHHH--
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGY-QRFSLST---IRLLMFLFRNPHDSLRIGPKEFADLWSCL-- 143 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g-~~ls~~~---v~~L~~~~D~~d~dG~I~~eEF~~l~~~l-- 143 (163)
.|...+.++++++|..+|+|++|+| |..+|+.+| ...++++ ++.+|..+|. +++|.|+++||+.++..+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~-DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDY-DEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHHhcc
Confidence 3555667889999999999999997 889999988 5777776 8999999999 999999999999998876
Q ss_pred ----HHHHHHhcchhcCCCCC
Q 031234 144 ----GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 ----~~~r~~iF~~~D~D~~~ 160 (163)
+++++ +|+.||+|+.+
T Consensus 211 ~~seEEL~e-aFk~fDkDgdG 230 (644)
T PLN02964 211 LVAANKKEE-LFKAADLNGDG 230 (644)
T ss_pred CCCHHHHHH-HHHHhCCCCCC
Confidence 35899 99999999876
No 29
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.81 E-value=2e-08 Score=70.08 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCC--CCCceeHHHHHHHHH-hcCCCCC----HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRD--RSGFIDENELQQALS-SGYQRFS----LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 76 ~~~l~~~F~~~D~d--~sG~Is~~EL~~aL~-~~g~~ls----~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
...+..+|+.++.. .+|+|+.+||+.+|. .++..++ .+.++.||..+|. +++|.|+|+||+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~-d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDT-NQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 45688899999855 489999999999997 5666666 8999999999999 999999999999988765
No 30
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.79 E-value=2e-08 Score=79.91 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH------------
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG------------ 144 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~------------ 144 (163)
.-...+|+.+|.|++|.|+..||..+|...-..-.++.++..|+.+|. +++|.|+++|++.++..+.
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~-dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDL-DGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecC-CCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 346679999999999999999999999977777788888889999999 9999999999988876542
Q ss_pred -----HHHHHhcchhcCCCCC
Q 031234 145 -----QWRVSILTDYSLNFQN 160 (163)
Q Consensus 145 -----~~r~~iF~~~D~D~~~ 160 (163)
..-. +|..+|.|+.+
T Consensus 143 ~~~~~~v~~-if~k~D~n~Dg 162 (193)
T KOG0044|consen 143 ETPEERVDK-IFSKMDKNKDG 162 (193)
T ss_pred ccHHHHHHH-HHHHcCCCCCC
Confidence 2334 88889888754
No 31
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.77 E-value=3.3e-08 Score=72.72 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 73 p~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+.-...+...|..+|.|++|.|+.+||..++ .......+..+|..+|. ++||.|+++||..++.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~-n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDL-DKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCC-CCCCCCCHHHHHHHHh
Confidence 4456779999999999999999999999876 33446778899999999 9999999999998874
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=98.70 E-value=8.2e-08 Score=63.88 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=55.8
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHH
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDS-LRIGPKEFADLWSC 142 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g~-~ls~~~v~~L~~~~D~~d~d-G~I~~eEF~~l~~~ 142 (163)
.+|..||.++.|.|...+|..+|+..+. ...+.+++.|..++|. ++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP-~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDP-EGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCC-CCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999998877 8899999999999998 766 99999999998764
No 33
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-07 Score=75.02 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhc-CCCCC--H----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFS--L----STIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~~ls--~----~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
++++-+|+.+|.+++|+|+.+||.++|..+ +...+ + +.++.+|..+|. ++||+|+++||..++...
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~-d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADT-DGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHcC
Confidence 378999999999999999999999999954 33333 3 355667888999 999999999999987653
No 34
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.65 E-value=1.2e-07 Score=72.88 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
++.+..+|+.||.+++|+|..+.|+++|...|.+++.++|+.|++.+-. +..|.|+|.+|+.++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~-d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPI-DKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCc-ccCCceeHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999999988 8899999999998876
No 35
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.58 E-value=3.9e-07 Score=79.29 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-HHHHHHHhc
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-LGQWRVSIL 151 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~-ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~-l~~~r~~iF 151 (163)
+-+.+++..|+.+|.+++|.|+.++|...|..+... ...+..+.++..+|. +.||+++|+||...+.. -.++.+ +|
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~-~~dg~vDy~eF~~Y~~~~E~~l~~-~F 88 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDA-NRDGRVDYSEFKRYLDNKELELYR-IF 88 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhccc-CcCCcccHHHHHHHHHHhHHHHHH-HH
Confidence 335579999999999999999999999999987665 777888999999999 99999999999986553 344566 88
Q ss_pred chhcCCCCC
Q 031234 152 TDYSLNFQN 160 (163)
Q Consensus 152 ~~~D~D~~~ 160 (163)
+.+|.+..+
T Consensus 89 ~~iD~~hdG 97 (463)
T KOG0036|consen 89 QSIDLEHDG 97 (463)
T ss_pred hhhccccCC
Confidence 888887654
No 36
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.55 E-value=9e-07 Score=62.51 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-----~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
...+..+|+.+- .+.+.++..||+.+|+. +...-+.+.++.||+.+|. |+||.|+|.||+.|+..|-....
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~-n~Dg~vdF~EF~~Lv~~l~~ac~ 82 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD-CRDGKVGFQSFFSLIAGLLIACN 82 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHHHHHH
Confidence 456889999997 56779999999999983 2445578999999999999 99999999999999888755443
No 37
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=75.30 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=65.7
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
-|...+++++..+|+.+|.|.||+|+..||+.+|.++|..-+.--++.||..+|. |.||+|+|-||+-++...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVde-d~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDE-DFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhc-ccccchhHHHHHHHHHHH
Confidence 3455567889999999999999999999999999999988888888999999999 999999999999988753
No 38
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.52 E-value=6.7e-07 Score=71.16 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcC-CCCCceeHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH------HHHHH
Q 031234 77 PDVIRSFEMVDR-DRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRV 148 (163)
Q Consensus 77 ~~l~~~F~~~D~-d~sG~Is~~EL~~aL~~~g~-~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------~~~r~ 148 (163)
.+++.+++.|=. ..+|.++.++++.++..... .-....++.+++.+|. +++|.|+|+||+..+..+ +.++.
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~-~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDK-NKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc-cCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 344444444433 46999999999999998764 5556677889999999 999999999999988765 56778
Q ss_pred HhcchhcCCCCC
Q 031234 149 SILTDYSLNFQN 160 (163)
Q Consensus 149 ~iF~~~D~D~~~ 160 (163)
+|+.||.|+.|
T Consensus 105 -~F~lyD~dgdG 115 (193)
T KOG0044|consen 105 -AFRLYDLDGDG 115 (193)
T ss_pred -hheeecCCCCc
Confidence 99999999976
No 39
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.46 E-value=5.8e-07 Score=67.99 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031234 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 72 pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
...+-+++.+.++.||++++|.|...||+.+|..+|.+++++++..|+.... |.+|-|+|++|+.-
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e--D~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE--DSNGCINYEAFVKH 148 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc--ccCCcCcHHHHHHH
Confidence 4567789999999999999999999999999999999999999999998776 47899999999874
No 40
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.45 E-value=6.6e-07 Score=77.89 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 73 p~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.+.+.++.++|+..|.++||.|+..|+.+.|+.+|..++++++..+++.+|+ ++++.|+++||...+.
T Consensus 78 ~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~-~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDK-DGKATIDLEEWRDHLL 145 (463)
T ss_pred HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhcc-CCCeeeccHHHHhhhh
Confidence 3445789999999999999999999999999999999999999999999999 9999999999988653
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.45 E-value=3.8e-07 Score=51.16 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
+++++|+.+|+|++|+|+.+||+.+|+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5678888888888888888888888765
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=98.42 E-value=1e-06 Score=81.06 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
.|+++|+.+|.|++|.|+.+||..+|..++...++++++.+|+.+|. +++|.|+++||+.++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDk-DgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADL-NGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCC-CCCCcCCHHHHHHHHHh
Confidence 48999999999999999999999999988888899999999999999 99999999999998775
No 43
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.38 E-value=1.3e-06 Score=76.87 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHh----cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSS----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~----~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
..+..+|+..|.|++|.|+.+||+.+++. ....++.+++.++.+.+|. ++||.|++.||+..+..+.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~-NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDL-NKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhcc-CCCCcccHHHHHHHHhhhc
Confidence 34788999999999999999999999884 3567899999999999999 9999999999988776543
No 44
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=7e-07 Score=50.38 Aligned_cols=30 Identities=40% Similarity=0.554 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH-hcC
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALS-SGY 107 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~-~~g 107 (163)
+|+.+|+.+|+|++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 588999999999999999999999998 564
No 45
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.22 E-value=1e-05 Score=58.44 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~ 146 (163)
..+.+...+..+|+.+|. .+|.|+.++.+.+|... +++.+.+..+....|. +++|.++++||+-.|..+...
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~-~~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADI-DNDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-S-SSSSEEEHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcC-CCCCcCCHHHHHHHHHHHHHH
Confidence 455667889999999884 68999999999999875 5888999999999999 999999999999887766443
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.14 E-value=3e-06 Score=47.48 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 114 ~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+++.+|+.+|. |++|.|+++||+.++..|
T Consensus 1 E~~~~F~~~D~-d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDK-DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHST-TSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCC-CCCCcCCHHHHHHHHHhC
Confidence 47889999999 999999999999998754
No 47
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.02 E-value=2.6e-05 Score=49.34 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=42.1
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+++..|++.+|+.++..+++..++.||+..|. +++|+|+-+||+.+++.|
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDK-SQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-S-SSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcc-cCCCCccHHHHHHHHHHh
Confidence 47889999999999999999999999999999 999999999999998865
No 48
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.99 E-value=5.7e-05 Score=59.91 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=46.5
Q ss_pred CCCCChHHHHHHHHHhcCC-CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHHHH-----
Q 031234 71 FPPGTHPDVIRSFEMVDRD-RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLR-IGPKEFADLWSCL----- 143 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d-~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~-I~~eEF~~l~~~l----- 143 (163)
|..++...+...|..+|.+ ++|.|+.+||..++...-.. ..+.++..++. +++|. |+|++|+.++...
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----~~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----LADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----HHHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCCcc
Confidence 4555666777788888887 78888888887777432111 12223334443 33333 5555555554422
Q ss_pred --HHHHHHhcchhcCCCCC
Q 031234 144 --GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 144 --~~~r~~iF~~~D~D~~~ 160 (163)
.+++- +|+.||.++.|
T Consensus 102 ~~~Kl~f-aF~vYD~~~~G 119 (187)
T KOG0034|consen 102 KREKLRF-AFRVYDLDGDG 119 (187)
T ss_pred HHHHHHH-HHHHhcCCCCC
Confidence 24444 55555555443
No 49
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.98 E-value=2.2e-05 Score=68.59 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
...+..+|+.+|.|++|.|+.+||.. ++.+|..+|. |+||.|+++||..++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~-d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDL-NHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCC-CCCCCCcHHHHHHHHHHH
Confidence 45688999999999999999999942 5788999999 999999999999987643
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.96 E-value=1.4e-05 Score=43.19 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHH
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQAL 103 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL 103 (163)
++.+|+.+|.|++|.|+.+||++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678888888888888888888764
No 51
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2.2e-05 Score=66.55 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH------HH---
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG------QW--- 146 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~-~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~------~~--- 146 (163)
...++.|+..|.|++|.++.+||..+|. .-...+..-.|++-|..+|+ |+||+|+++||+.=+.... .|
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dk-n~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDK-NGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhccc-CCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 4578899999999999999999999998 44456777888888999999 9999999999997443221 12
Q ss_pred --HHHhcchhcCCCCC
Q 031234 147 --RVSILTDYSLNFQN 160 (163)
Q Consensus 147 --r~~iF~~~D~D~~~ 160 (163)
.+ .|..+|+|+.+
T Consensus 242 Ere~-F~~~~DknkDG 256 (325)
T KOG4223|consen 242 EREQ-FFEFRDKNKDG 256 (325)
T ss_pred cHHH-HHHHhhcCCCC
Confidence 23 56777887765
No 52
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.81 E-value=5.6e-05 Score=74.29 Aligned_cols=89 Identities=8% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCC--HH-----HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS--LS-----TIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 69 ~~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls--~~-----~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+|-.-.+..++..+|+.||++.+|.++..+|+-||+.+|+.|+ ++ +++.++..+|. +.+|.|++.||+.+|.
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP-~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDP-NRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCC-CCcCcccHHHHHHHHH
Confidence 4455566788999999999999999999999999999998872 23 78999999999 9999999999999887
Q ss_pred HH--------HHHHHHhcchhcCCCC
Q 031234 142 CL--------GQWRVSILTDYSLNFQ 159 (163)
Q Consensus 142 ~l--------~~~r~~iF~~~D~D~~ 159 (163)
.- +.+.. +|+.+|..+.
T Consensus 2324 ~~ETeNI~s~~eIE~-AfraL~a~~~ 2348 (2399)
T KOG0040|consen 2324 SKETENILSSEEIED-AFRALDAGKP 2348 (2399)
T ss_pred hcccccccchHHHHH-HHHHhhcCCc
Confidence 52 45777 8888888543
No 53
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.69 E-value=9.9e-05 Score=66.22 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~---~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+...+..+++..|...| |++|+|+..||..++.+.+. .+..++++.++...+. +.+|+|+||||+.++..+
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~-~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGV-DADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCC-CcCCccCHHHHHHHHHhh
Confidence 55666678999999999 99999999999999996543 4568899999999999 999999999999976554
No 54
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.66 E-value=0.00011 Score=47.49 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHH----------HHHHHHhcchhcCCCCC
Q 031234 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCL----------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 114 ~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l----------~~~r~~iF~~~D~D~~~ 160 (163)
.++.+|..+|. +++|.|+.+||..++..+ ..+.. +|+.+|+|+.+
T Consensus 1 ~l~~~F~~~D~-d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~d~dG 55 (66)
T PF13499_consen 1 RLKEAFKKFDK-DGDGYISKEELRRALKHLGRDMSDEESDEMIDQ-IFREFDTDGDG 55 (66)
T ss_dssp HHHHHHHHHST-TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHH-HHHHHTTTSSS
T ss_pred CHHHHHHHHcC-CccCCCCHHHHHHHHHHhcccccHHHHHHHHHH-HHHHhCCCCcC
Confidence 36789999999 999999999999998865 24666 89999999876
No 55
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.60 E-value=9.9e-05 Score=56.66 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhc-CCCCCHHHHHH----HHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRL----LMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~~ls~~~v~~----L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
.+.-+|+.+|-|++++|..++|...|..+ ...++.+++.. ++...|. ++||+|++.||..+..+--.+..
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~-DgDgkl~~~eFe~~i~raPDFls 183 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADL-DGDGKLSFAEFEHVILRAPDFLS 183 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhCcchHh
Confidence 34557888999999999999999999965 45788876654 5666799 99999999999998776554444
No 56
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00027 Score=62.23 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHh------cC----------CCCCHHHHHH-HHHHhcCCCCCCcccHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS------GY----------QRFSLSTIRL-LMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~------~g----------~~ls~~~v~~-L~~~~D~~d~dG~I~~eEF~~ 138 (163)
+..+.-+|++||.|+||.|+.+||..+.+. .+ ..+....... +..-|.+ +++++++++||+.
T Consensus 232 ~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~-rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 232 ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGK-RGNGKLSIDEFLK 310 (489)
T ss_pred cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhcc-CCCccccHHHHHH
Confidence 345778999999999999999999887752 11 1222222222 3344677 8899999999999
Q ss_pred HHHHHHH--HHHHhcchhcCCCC
Q 031234 139 LWSCLGQ--WRVSILTDYSLNFQ 159 (163)
Q Consensus 139 l~~~l~~--~r~~iF~~~D~D~~ 159 (163)
++..|+. ++- -|.++|...+
T Consensus 311 F~e~Lq~Eil~l-EF~~~~~~~~ 332 (489)
T KOG2643|consen 311 FQENLQEEILEL-EFERFDKGDS 332 (489)
T ss_pred HHHHHHHHHHHH-HHHHhCcccc
Confidence 9998853 444 6888888765
No 57
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.33 E-value=0.00011 Score=53.58 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
....+...|..+|.|++|.|+..||..+...+ ...+.-++.++..-|. |+|+.|++.|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~-n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDV-NKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-T-T-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCC-CCCCCCCHHHHcc
Confidence 34567788999999999999999999886644 3334456778888999 9999999999864
No 58
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.32 E-value=0.00032 Score=37.77 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 115 IRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 115 v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
++.+|..+|. |+||.|+++||..++
T Consensus 1 l~~~F~~~D~-d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDT-DGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTT-TSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcC-CCCCcCCHHHHHHHC
Confidence 4678999999 999999999998864
No 59
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00077 Score=57.28 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH---------
Q 031234 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--------- 142 (163)
Q Consensus 72 pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~--------- 142 (163)
+-+....+..+|.++|.+++|+|+..||+..+...-.+.-.+.+..-+..+|. ++||.|+|+|++..+..
T Consensus 72 ~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~-~~Dg~i~~eey~~~~~~~~~~~~~~~ 150 (325)
T KOG4223|consen 72 PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDK-NKDGFITWEEYLPQTYGRVDLPDEFP 150 (325)
T ss_pred cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccceeeHHHhhhhhhhcccCccccc
Confidence 34456789999999999999999999999988754444444455555778899 99999999999875431
Q ss_pred -----------HHHHHHHhcchhcCCCCCC
Q 031234 143 -----------LGQWRVSILTDYSLNFQNP 161 (163)
Q Consensus 143 -----------l~~~r~~iF~~~D~D~~~~ 161 (163)
+..+++ -|+.-|.|+.+.
T Consensus 151 d~e~~~~~~km~~rDe~-rFk~AD~d~dg~ 179 (325)
T KOG4223|consen 151 DEEDNEEYKKMIARDEE-RFKAADQDGDGS 179 (325)
T ss_pred cchhcHHHHHHHHHHHH-HHhhcccCCCCc
Confidence 244666 899989887654
No 60
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.23 E-value=0.0011 Score=45.13 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH-hcCC-CCCHHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALS-SGYQ-RFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLWS 141 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~-~~g~-~ls~~~v~~L~~~~D~~d----~dG~I~~eEF~~l~~ 141 (163)
+|..+|+.+- ++.+.|+.++|+..|+ ..+. .++.+.|+.||.++.. + ..+.|++++|..++.
T Consensus 1 ei~~if~~ys-~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~-~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYS-SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEP-DERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHC-TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHH-HHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHh-CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHcc-chhhcccCCcCHHHHHHHHC
Confidence 5789999995 4889999999999998 4454 6799999999999864 3 468999999998764
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.15 E-value=0.00071 Score=35.05 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
+++++|+.+|.+++|.|+..||+.+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3567788888888888888888877754
No 62
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.06 E-value=0.00084 Score=37.52 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 114 TIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 114 ~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+++.+|..+|. +++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~-d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDK-DGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-T-TSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCC-CCCCcCcHHHHHHHHH
Confidence 36788999999 9999999999999887
No 63
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.94 E-value=0.0061 Score=54.25 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhc-CCCC---------------------------------------------
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRF--------------------------------------------- 110 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~~l--------------------------------------------- 110 (163)
.++.+.|+.+|.+++|+|+...-..++... +.++
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 468889999999999999999988888731 1110
Q ss_pred -CHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 111 -SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 111 -s~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
....++.+|+.+|. |+.|.|+.+||+..|+.+
T Consensus 544 r~ks~LetiF~~iD~-D~SG~isldEF~~a~~l~ 576 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDA-DNSGEISLDEFRTAWKLL 576 (631)
T ss_pred hchhhHHHHHHHhcc-CCCCceeHHHHHHHHHHH
Confidence 01134557888899 999999999999999865
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.93 E-value=0.0029 Score=38.42 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHH------HHHHHHhcchhcCCCCC
Q 031234 115 IRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 115 v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------~~~r~~iF~~~D~D~~~ 160 (163)
++.++..+|. +++|.|+++||..++..+ ..++. +|+.+|.++.+
T Consensus 2 ~~~~f~~~d~-~~~g~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 51 (63)
T cd00051 2 LREAFRLFDK-DGDGTISADELKAALKSLGEGLSEEEIDE-MIREVDKDGDG 51 (63)
T ss_pred HHHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHH-HHHHhCCCCCC
Confidence 5677888999 999999999999998876 45788 99999987765
No 65
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.91 E-value=0.002 Score=40.06 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
-+.+++..+|..+|.|++|.|+.+||..+|..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 56678999999999999999999999998863
No 66
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0032 Score=46.62 Aligned_cols=58 Identities=24% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHh------cCC---C-CCHHHHHHHHH----HhcCCCCCCcccHHHHHHH
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSS------GYQ---R-FSLSTIRLLMF----LFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~------~g~---~-ls~~~v~~L~~----~~D~~d~dG~I~~eEF~~l 139 (163)
-.|.++|-|++++|+--||..++.- .|. . .++.++..||. .-|. ++||.|+|.||++-
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDf-N~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDF-NGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhccccc-CCCceeeHHHHHhh
Confidence 3788999999999999999999983 222 1 34555555554 4477 89999999999763
No 67
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.75 E-value=0.0029 Score=40.34 Aligned_cols=43 Identities=7% Similarity=-0.112 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHH----HHHHHHhcchhcCCCCC
Q 031234 116 RLLMFLFRNPHDSLRIGPKEFADLWSCL----GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 116 ~~L~~~~D~~d~dG~I~~eEF~~l~~~l----~~~r~~iF~~~D~D~~~ 160 (163)
+.+|..+|. +++|.|+.+||..++..+ ..+.+ +|..+|.++.+
T Consensus 2 ~~~F~~~D~-~~~G~i~~~el~~~l~~~g~~~~~~~~-i~~~~d~~~~g 48 (67)
T cd00052 2 DQIFRSLDP-DGDGLISGDEARPFLGKSGLPRSVLAQ-IWDLADTDKDG 48 (67)
T ss_pred hHHHHHhCC-CCCCcCcHHHHHHHHHHcCCCHHHHHH-HHHHhcCCCCC
Confidence 567888999 999999999999988664 45788 99999988765
No 68
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.54 E-value=0.0014 Score=54.43 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHH-hcCCCC--CHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRF--SLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~-~~g~~l--s~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
....++.+|.+.|.+.+|+|+..|+++-+. +....+ ..++-+..|+..|. ++||.|.++||.--+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDp-dgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDP-DGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCC-CCCCceehhhhhhHH
Confidence 346799999999999999999999998766 333222 22333445777888 999999999997544
No 69
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.53 E-value=0.0079 Score=41.66 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=38.2
Q ss_pred HHHHHHHHHhc-CCCCCC-cccHHHHHHHHHH-H----------HHHHHHhcchhcCCCCC
Q 031234 113 STIRLLMFLFR-NPHDSL-RIGPKEFADLWSC-L----------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 113 ~~v~~L~~~~D-~~d~dG-~I~~eEF~~l~~~-l----------~~~r~~iF~~~D~D~~~ 160 (163)
+.+++.|..+| . +++| .|+.+||..++.. + ..+.+ +|+.+|.|+.+
T Consensus 9 ~~l~~~F~~fDd~-dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~-i~~~~D~d~~G 67 (92)
T cd05025 9 ETLINVFHAHSGK-EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDK-IMKELDENGDG 67 (92)
T ss_pred HHHHHHHHHHhcc-cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHH-HHHHHCCCCCC
Confidence 45778899997 8 9999 5999999999864 3 45888 99999998765
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.048 Score=51.53 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 031234 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145 (163)
Q Consensus 72 pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~ 145 (163)
|....-.+..+|+.+|+..+|+|+-..-+.+|... .|+...+-.|..+-|. |+||+|+.+||+-.|..+..
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDv-d~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDV-DGDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeecc-CCCCcccHHHHHHHHHHHHH
Confidence 44455678999999999999999999999988754 4677777777788899 99999999999987665543
No 71
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.47 E-value=0.0081 Score=41.92 Aligned_cols=46 Identities=2% Similarity=-0.085 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----HHHHHHhcchhcCCCCC
Q 031234 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCL----GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 113 ~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l----~~~r~~iF~~~D~D~~~ 160 (163)
+.++.+|..+|. +++|.|+++||..++..+ .++.+ +|..+|.++.+
T Consensus 10 ~~l~~~F~~~D~-d~~G~Is~~el~~~l~~~~~~~~ev~~-i~~~~d~~~~g 59 (96)
T smart00027 10 AKYEQIFRSLDK-NQDGTVTGAQAKPILLKSGLPQTLLAK-IWNLADIDNDG 59 (96)
T ss_pred HHHHHHHHHhCC-CCCCeEeHHHHHHHHHHcCCCHHHHHH-HHHHhcCCCCC
Confidence 356677889999 999999999999998765 45777 99999988765
No 72
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.39 E-value=0.0045 Score=56.42 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~ 145 (163)
.+.+.+....+..|..+|.|+.|++...+++.+|+..+..++++.+++++...|. +.+|.+.+.||..++..+++
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~-~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADE-NLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcceeeHHHHHHHHHHHhc
Confidence 3567777888899999999999999999999999998889999999999999998 88999999999999887643
No 73
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.34 E-value=0.0064 Score=44.62 Aligned_cols=50 Identities=6% Similarity=0.044 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHHHHhcchhcCCCCC
Q 031234 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 109 ~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l--~~~r~~iF~~~D~D~~~ 160 (163)
..-...++.+|..+|. |+||.|+.+|+..+.... ..+.. +|..+|.|+.+
T Consensus 44 ~~~~~~l~w~F~~lD~-d~DG~Ls~~EL~~~~l~~~e~~~~~-f~~~~D~n~Dg 95 (116)
T cd00252 44 PMCKDPVGWMFNQLDG-NYDGKLSHHELAPIRLDPNEHCIKP-FFESCDLDKDG 95 (116)
T ss_pred HHHHHHHHHHHHHHCC-CCCCcCCHHHHHHHHccchHHHHHH-HHHHHCCCCCC
Confidence 4455778899999999 999999999999875211 44667 88999988765
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.32 E-value=0.006 Score=52.35 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=57.6
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
-|+.+..-++-+|++|+.+.||.+...+|-.+|+. +| +..-.+-.++..++. ..+++|.+++|.+++..-.++..
T Consensus 290 ~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q-~d~~ki~~~~f~~fa~~~p~~a~ 365 (412)
T KOG4666|consen 290 GPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFPSIEQ-KDDPKIYASNFRKFAATEPNLAL 365 (412)
T ss_pred CCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccccchhhhc-ccCcceeHHHHHHHHHhCchhhh
Confidence 37888888999999999999999999888888883 33 333344557888887 77899999999998765444443
No 75
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.28 E-value=0.0076 Score=53.59 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=55.6
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCCCCCcccHHHHHHHHHHHH------HHHHHhc
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF----RNPHDSLRIGPKEFADLWSCLG------QWRVSIL 151 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~----D~~d~dG~I~~eEF~~l~~~l~------~~r~~iF 151 (163)
-|-.+|+|++|.|+.++|...- ...++...++.+|..+ -. -.+|+|+|++|+.++..++ .+.= .|
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~-~~eGrmdykdFv~FilA~e~k~t~~SleY-wF 357 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTV-KVEGRMDYKDFVDFILAEEDKDTPASLEY-WF 357 (493)
T ss_pred HHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhcccccee-eecCcccHHHHHHHHHHhccCCCccchhh-he
Confidence 3778899999999999998763 3456677888888732 22 4689999999999887663 2455 67
Q ss_pred chhcCCCCC
Q 031234 152 TDYSLNFQN 160 (163)
Q Consensus 152 ~~~D~D~~~ 160 (163)
+-+|-|+.|
T Consensus 358 rclDld~~G 366 (493)
T KOG2562|consen 358 RCLDLDGDG 366 (493)
T ss_pred eeeeccCCC
Confidence 777777665
No 76
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.25 E-value=0.0051 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 115 IRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 115 v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
++.++..+|. +++|.|+++||..++..
T Consensus 2 ~~~~f~~~d~-~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDK-DGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCC-CCCCcEeHHHHHHHHHh
Confidence 5678999999 99999999999988764
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.12 E-value=0.023 Score=51.27 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhc------CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG------YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--GQWR 147 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~------g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l--~~~r 147 (163)
+..+..+|+.||+.++|.++.+++.+++... -..++.+.++..|. . +....++|.||..++..+ ++.+
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~-~~~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---D-IRKRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---h-HHHHhccHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999999999999843 23445556665443 3 344679999999988754 5677
Q ss_pred HHhcchhcCCCCC
Q 031234 148 VSILTDYSLNFQN 160 (163)
Q Consensus 148 ~~iF~~~D~D~~~ 160 (163)
+ +|+..|..+.+
T Consensus 183 q-afr~~d~~~ng 194 (694)
T KOG0751|consen 183 Q-AFREKDKAKNG 194 (694)
T ss_pred H-HHHHhcccCCC
Confidence 8 89999988764
No 78
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.09 E-value=0.033 Score=50.33 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=61.5
Q ss_pred CCCCChHHHHHHHHHh---cCCCCCceeHHHHHHHHH-hcCC-CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH--
Q 031234 71 FPPGTHPDVIRSFEMV---DRDRSGFIDENELQQALS-SGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-- 143 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~---D~d~sG~Is~~EL~~aL~-~~g~-~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l-- 143 (163)
.+....++++.+|..+ ++++.-....++|.+..- ..+. .+..+.++++-...|. .+||.|+|+||+.+-..+
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~-tKDglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQ-TKDGLISFQEFRAFESVLCA 105 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhh-cccccccHHHHHHHHhhccC
Confidence 3445567788877655 556666777777765433 3333 5666666666666677 899999999999865433
Q ss_pred --HHHHHHhcchhcCCCCCC
Q 031234 144 --GQWRVSILTDYSLNFQNP 161 (163)
Q Consensus 144 --~~~r~~iF~~~D~D~~~~ 161 (163)
...+. +|+.||+.+++.
T Consensus 106 pDal~~~-aFqlFDr~~~~~ 124 (694)
T KOG0751|consen 106 PDALFEV-AFQLFDRLGNGE 124 (694)
T ss_pred chHHHHH-HHHHhcccCCCc
Confidence 34667 999999988753
No 79
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.94 E-value=0.024 Score=39.60 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=36.3
Q ss_pred HHHHHHHHhc-CCCCCC-cccHHHHHHHHHHH-----------HHHHHHhcchhcCCCCC
Q 031234 114 TIRLLMFLFR-NPHDSL-RIGPKEFADLWSCL-----------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 114 ~v~~L~~~~D-~~d~dG-~I~~eEF~~l~~~l-----------~~~r~~iF~~~D~D~~~ 160 (163)
.+..+|..+| . +++| +|+.+||..++... ..|.+ +++.+|.|+.+
T Consensus 11 ~~~~~F~~~dd~-dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~-i~~elD~n~dG 68 (93)
T cd05026 11 TLIRIFHNYSGK-EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDK-IMNDLDSNKDN 68 (93)
T ss_pred HHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHH-HHHHhCCCCCC
Confidence 4567799998 6 7888 59999999998652 25888 99999998765
No 80
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.91 E-value=0.02 Score=53.56 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH---HHHHHhcc
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG---QWRVSILT 152 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~---~~r~~iF~ 152 (163)
..-|..+|+.+|++.+|.++..|...+++.+...+....++.++++.+. ..+++|..++|+.+...+. +++. +|.
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~-~~~~k~~~~~~~~~~~~~~~rpev~~-~f~ 212 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDN-SQTGKLEEEEFVKFRKELTKRPEVYF-LFV 212 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHh-hccceehHHHHHHHHHhhccCchHHH-HHH
Confidence 4457789999999999999999999999999999999999999999987 7899999999999877652 3455 555
Q ss_pred hhcC
Q 031234 153 DYSL 156 (163)
Q Consensus 153 ~~D~ 156 (163)
.+-.
T Consensus 213 ~~s~ 216 (746)
T KOG0169|consen 213 QYSH 216 (746)
T ss_pred HHhC
Confidence 4443
No 81
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.85 E-value=0.029 Score=39.01 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc-CCCCCC-cccHHHHHHHHHH-----H------HHHHHHhcchhcCCCCC
Q 031234 113 STIRLLMFLFR-NPHDSL-RIGPKEFADLWSC-----L------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 113 ~~v~~L~~~~D-~~d~dG-~I~~eEF~~l~~~-----l------~~~r~~iF~~~D~D~~~ 160 (163)
.+++.+|..+| + +++| .|+.+||..++.. + ..+.+ +++.+|.|+.+
T Consensus 8 ~~l~~aF~~fD~~-dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~-~i~~~D~n~dG 66 (88)
T cd05027 8 VALIDVFHQYSGR-EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDK-VMETLDSDGDG 66 (88)
T ss_pred HHHHHHHHHhccc-CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHH-HHHHhCCCCCC
Confidence 35677899997 8 8999 6999999999987 4 23777 88889998865
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.35 E-value=0.042 Score=48.23 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=42.3
Q ss_pred HHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhcchhcCCCCC
Q 031234 97 NELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRVSILTDYSLNFQN 160 (163)
Q Consensus 97 ~EL~~aL~~-----~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~~iF~~~D~D~~~ 160 (163)
..|..+++. .++..-...++.+|+.+|. +++|.|+.+||+. ... +|..+|.|+.+
T Consensus 313 ~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~-dgdG~Is~~E~~~-------~~~-~F~~~D~d~DG 372 (391)
T PRK12309 313 ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDL-DGDGFITREEWLG-------SDA-VFDALDLNHDG 372 (391)
T ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCC-CCCCcCcHHHHHH-------HHH-HHHHhCCCCCC
Confidence 445555541 3566677889999999999 9999999999953 356 88889988775
No 83
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.31 E-value=0.059 Score=37.51 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHH-hcCCCCCC-cccHHHHHHHHHHH-----------HHHHHHhcchhcCCCCC
Q 031234 114 TIRLLMFL-FRNPHDSL-RIGPKEFADLWSCL-----------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 114 ~v~~L~~~-~D~~d~dG-~I~~eEF~~l~~~l-----------~~~r~~iF~~~D~D~~~ 160 (163)
.+..+|.. +++ ++++ .|+.+||..++... ..|.+ +++.+|.|+.+
T Consensus 10 ~l~~~F~~y~~~-dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~-ll~~~D~d~DG 67 (89)
T cd05023 10 SLIAVFQKYAGK-DGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDR-MMKKLDLNSDG 67 (89)
T ss_pred HHHHHHHHHhcc-CCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHH-HHHHcCCCCCC
Confidence 34566777 566 6765 99999999998764 45888 99999998765
No 84
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.28 E-value=0.14 Score=39.26 Aligned_cols=63 Identities=8% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHHHh---cCCCCCceeHHHHHHHHHhc---CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 80 IRSFEMV---DRDRSGFIDENELQQALSSG---YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 80 ~~~F~~~---D~d~sG~Is~~EL~~aL~~~---g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+++|+.| -..+...|+...|..+|+.. +..++...+..+|..+.. ....+|+|++|+.++..|
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~-k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKA-KGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT--SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhc-CCCcccCHHHHHHHHHHH
Confidence 4455555 45677789999999999954 456999999999999876 566789999999988766
No 85
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.28 E-value=0.059 Score=36.65 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCC-CCCCcccHHHHHHHHHH-----------HHHHHHHhcchhcCCCCC
Q 031234 113 STIRLLMFLFRNP-HDSLRIGPKEFADLWSC-----------LGQWRVSILTDYSLNFQN 160 (163)
Q Consensus 113 ~~v~~L~~~~D~~-d~dG~I~~eEF~~l~~~-----------l~~~r~~iF~~~D~D~~~ 160 (163)
+.++.+|..+|.- +++|.|+.+||..++.. ...+.. ++..+|.++.+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~-i~~~~d~~~~g 66 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDK-IMKDLDVNKDG 66 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHH-HHHHhccCCCC
Confidence 4566778888861 28899999999998864 255788 99999988765
No 86
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.04 Score=49.78 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
+.+.+.+-|+.+..|-+|+|+-.--++++.+ -+|...++..|..+-|. +.||-|++.||+..|..
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~-d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDV-DRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhccc-CccccccHHHHHhhHhh
Confidence 3455778899999999999999988888876 46888999999999999 99999999999987764
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.78 E-value=0.056 Score=34.16 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
+.-...+|+.+|++++|.|+.+|+.++.+.
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 345778999999999999999999998764
No 88
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.46 E-value=0.025 Score=50.18 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=33.9
Q ss_pred eeHHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 94 IDENELQQALS-SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 94 Is~~EL~~aL~-~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
|+..+|+++.. ..|..+++-.|+-+|..||. |+||.|+.+||+.+++.
T Consensus 405 i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~-N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 405 IDEKTFQRAAKVVTGVELSDHVVDVVFTIFDE-NNDGTLSHKEFLAVMKR 453 (489)
T ss_pred CCHHHHHHHHHHhcCcccccceeeeEEEEEcc-CCCCcccHHHHHHHHHH
Confidence 44444444433 23556666666667788899 99999999999998864
No 89
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.05 E-value=0.08 Score=36.72 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHHHhc
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~ 106 (163)
.+.+++.++|+.+|.|++|.|+.+||..++..+
T Consensus 48 ~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 48 LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 467899999999999999999999998888743
No 90
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.93 E-value=0.04 Score=38.28 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcC
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGY 107 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g 107 (163)
+.+++..+|+.+|.+++|.|+.+||..++....
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999887543
No 91
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=93.80 E-value=0.092 Score=36.66 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhc
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~ 106 (163)
.++.++++.+|.|++|.|+.+||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 789999999999999999999999888754
No 92
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.59 E-value=0.12 Score=44.85 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=56.2
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.++|.=..++-..|.++|.+.+|.|+..||+.+- ..-.+.-|+.+|..-|. ..||.|+-.|+...+.
T Consensus 243 s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~-~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 243 SILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDT-YKDGSISTNEWCYCFQ 309 (434)
T ss_pred ccCcchhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcc-cccCccccchhhhhhc
Confidence 3677778899999999999999999999998764 33446677888988898 8999999999887654
No 93
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.57 E-value=0.11 Score=44.56 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=42.8
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHh----cCCCC-CHHHH-----------HHHHHHhcCCCCCCcccHHHHHHH
Q 031234 82 SFEMVDRDRSGFIDENELQQALSS----GYQRF-SLSTI-----------RLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~----~g~~l-s~~~v-----------~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
.|..+|.|++|+++..||..++.. ....- .++.+ +.+|+.+|. +.|..|+++||+.-
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDt-NqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDT-NQDRLVTLEEFLND 321 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhccc-chhhhhhHHHHHhh
Confidence 788899999999999999998882 22111 11111 236778899 99999999999875
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.52 E-value=0.22 Score=45.78 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=49.9
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHH-hcCCCCCHHHHHHHHHHhcCC--C--CCCcccHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRNP--H--DSLRIGPKEFADLW 140 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~-~~g~~ls~~~v~~L~~~~D~~--d--~dG~I~~eEF~~l~ 140 (163)
+.+.....|.++|+..|.|++|.++..||..+=+ .++..+...++..+...++.. + -+..+++.-|+.|.
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 4455567899999999999999999999988766 567788777766655554430 1 23456666676653
No 95
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.16 E-value=0.12 Score=35.57 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhc
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~ 106 (163)
.++|..+|+.+|.+++|.|+.+||..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 6789999999999999999999999988743
No 96
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.05 E-value=0.33 Score=46.62 Aligned_cols=66 Identities=17% Similarity=-0.021 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCH--HHHHHHHHHh---cCCCCCCcccHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSL--STIRLLMFLF---RNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~--~~v~~L~~~~---D~~d~dG~I~~eEF~~l~~~ 142 (163)
..+++..|+.+|+...|.++.+++..+|..+|.+... .-+.+|+..+ |. +.-|.++|.+|...+.+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~-l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNP-LIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCc-ccccceeHHHHHhHhhh
Confidence 3679999999999999999999999999999988774 2334444444 44 44589999999987764
No 97
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=93.01 E-value=0.17 Score=36.37 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
.+.+..+|...|.|++|+++.+||..+|..
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 477999999999999999999999998874
No 98
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=92.84 E-value=0.26 Score=42.52 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~-~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
+.+...|..||.+++|.++..|.-..|. ..+...+.+.++.-+++|+. +.||.++-++|..++..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v-~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSV-AEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccc-ccccccchHHHHHHHHH
Confidence 6788999999999999999999888887 45678899999999999999 99999999998877654
No 99
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.02 E-value=0.084 Score=45.50 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~-~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.+...|..+|+|.++-|+..|.+.+-+-+-. .-...-.+.+++.-|. |+|..|+++|++..+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDl-NkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDL-NKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhccc-CCCceecHHHHhhhhc
Confidence 5677899999999999999996554442211 1223445667777899 9999999999877654
No 100
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.97 E-value=0.29 Score=49.31 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=49.4
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
.|+.+|.|+.|.|+..||..+|... ...++.+++-|+..... +.+..++|+||+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~-dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEA-DENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhcc-CccccccHHHHHHHh
Confidence 5788899999999999999999864 46788889988888887 888999999998754
No 101
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.95 E-value=0.27 Score=34.66 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhc
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~ 106 (163)
....+.++|+.+|.|+||.|+..|+..++..+
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45679999999999999999999999888754
No 102
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=90.91 E-value=0.56 Score=39.19 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=49.1
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
+.=+..|.+++|.++.+||...+--....+...++..++..-|. +++.+++++|.+.
T Consensus 285 EFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~-n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 285 EFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDA-NNDEKLSLEELLE 341 (362)
T ss_pred HHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhcc-CCCcccCHHHHHH
Confidence 33346799999999999999997777778888899999999998 9999999999765
No 103
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=90.68 E-value=0.84 Score=35.33 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=52.9
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcCCCCCH-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----------HHHHHH
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSL-STIRLLMFLFRNPHDSLRIGPKEFADLWSCL----------GQWRVS 149 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~-~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l----------~~~r~~ 149 (163)
++-+.|-.|+.|.++.++|..+++.+...-.. -++.-.++.+|. ++|+.|.-++....+..| ..+.++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDf-d~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDF-DGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeec-CCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 34455568999999999999998855432222 233445777899 999999999988877655 122222
Q ss_pred hcchhcCCCCC
Q 031234 150 ILTDYSLNFQN 160 (163)
Q Consensus 150 iF~~~D~D~~~ 160 (163)
+.+.-|-|+.+
T Consensus 154 vieEAD~DgDg 164 (189)
T KOG0038|consen 154 VIEEADLDGDG 164 (189)
T ss_pred HHHHhcCCCCC
Confidence 55666666654
No 104
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.59 E-value=1.5 Score=31.40 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN--PHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~--~d~dG~I~~eEF~~l~~~l 143 (163)
..+|++.|..+-+ +|.|..++|.+|+ |..-+.+...+||..+.. --....|+.+|+..+|..|
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 6678888888764 9999999999986 555566666666655421 0235689999999999876
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.54 E-value=3.9 Score=32.19 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCC-------------------------------------------------
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQ------------------------------------------------- 108 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~------------------------------------------------- 108 (163)
.|++-..=||+|+||.|...|--+.++.+|.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4555555579999999998886555553221
Q ss_pred ----CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 109 ----RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 109 ----~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
++..+..++||.++++ ...+.|++.|...|+..
T Consensus 88 D~eGrFvp~kFe~iF~kya~-~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAK-TGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCC-CCCCCcCHHHHHHHHHh
Confidence 2455678888888888 67788999998888764
No 106
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=88.16 E-value=0.97 Score=41.74 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=48.5
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCC-C----CCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ-R----FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~-~----ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+.+...+-+..+|..+|.|+||.++..||..+++.... + ...+.. .. +..|.|+++-|.+.|..+
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t-------~~-~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST-------VK-NERGWLTLNGFLSQWSLM 378 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc-------ee-cccceeehhhHHHHHHHH
Confidence 55666788999999999999999999999999996432 1 111111 12 356899999999988743
No 107
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=88.04 E-value=0.8 Score=30.64 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---C---CCCCcccHHHHHH
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN---P---HDSLRIGPKEFAD 138 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~---~---d~dG~I~~eEF~~ 138 (163)
.+.+++..+|+.+ .++.++|+..||++.|..- .++-++..+.. + ...|.++|..|+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4668999999999 7899999999999887532 12233333322 0 1236788888864
No 108
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.55 E-value=0.86 Score=43.51 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.8
Q ss_pred CcccHHHHHHH
Q 031234 129 LRIGPKEFADL 139 (163)
Q Consensus 129 G~I~~eEF~~l 139 (163)
-++.|+|...+
T Consensus 711 ~rmpyeeik~~ 721 (1102)
T KOG1924|consen 711 FRMPYEEIKNV 721 (1102)
T ss_pred ccCCHHHHHHH
Confidence 34666665443
No 109
>PF14658 EF-hand_9: EF-hand domain
Probab=86.98 E-value=1.4 Score=29.32 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHhcCCCC-CceeHHHHHHHHHh
Q 031234 74 GTHPDVIRSFEMVDRDRS-GFIDENELQQALSS 105 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~s-G~Is~~EL~~aL~~ 105 (163)
-++.+++.+.+.+|.++. |.|+.++|..+|+.
T Consensus 32 p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 32 PEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 346699999999999988 99999999999985
No 110
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=86.71 E-value=3.5 Score=30.13 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
++..++.++-..++..|+.++|+.+|+..|..+....++.+++.+.. .+++|.+.
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G------KdI~ELIa 58 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG------KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHH
Confidence 44556666666778889999999999999999999999999999875 56777654
No 111
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=86.05 E-value=1.6 Score=41.79 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=4.4
Q ss_pred CCHHHHHHHHH
Q 031234 110 FSLSTIRLLMF 120 (163)
Q Consensus 110 ls~~~v~~L~~ 120 (163)
++-++++.+|.
T Consensus 713 mpyeeik~~IL 723 (1102)
T KOG1924|consen 713 MPYEEIKNVIL 723 (1102)
T ss_pred CCHHHHHHHHh
Confidence 33444444333
No 112
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=85.57 E-value=1.1 Score=40.14 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=52.6
Q ss_pred HHHHHHHHHh----cCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 77 PDVIRSFEMV----DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 77 ~~l~~~F~~~----D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
--+.++|..+ -.-.+|+|+.+++.-++-+...+-+..-++=||+.+|. +++|.|+..|...++..
T Consensus 311 ~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDl-d~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 311 RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDL-DGDGILTLNELRYFYEE 379 (493)
T ss_pred HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeec-cCCCcccHHHHHHHHHH
Confidence 3477888833 24468999999999988877777788888889999999 99999999998777654
No 113
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=85.15 E-value=1.1 Score=41.67 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHH
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKE 135 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eE 135 (163)
+.++|+.+|.+.+|.|+..+|...|..+....-.+.++.+++.+|. +.+ .++.+|
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~-p~~-~~d~e~ 611 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDP-PAD-ELDREE 611 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccC-Ccc-cccccc
Confidence 4455555555555555555555555544444444455555555554 444 444444
No 114
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.01 E-value=0.36 Score=46.39 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=59.4
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
..+.....+.++|..+|++++|.|+-.++...+.. ..+....+..+..+.|. .++|.|+++||...+..+.
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~-~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADT-QNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcch-hccCcccccccchhhhhhh
Confidence 45555677888999999999999999999998877 66778888887888888 8899999999987776553
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.93 E-value=4 Score=32.12 Aligned_cols=65 Identities=6% Similarity=0.089 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCC-----CHHHHHHH-HHHhcCCCCCCcccHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRF-----SLSTIRLL-MFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~l-----s~~~v~~L-~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.+.+.++|.++++.+.+.|+..|+.++++...... ....++.+ +-.+-. +++|.|..|+-+.++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~-d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAK-DKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHc-CcCCcEeHHHHhhhcc
Confidence 36799999999998889999999999999532211 11222221 112234 5789999998766543
No 116
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=84.45 E-value=5.2 Score=29.17 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
++..+|-+++..++-..+..+++.+|...|..+..+.++.+|..+.. + +++|.+.
T Consensus 2 kyvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G--K----~i~ElIA 56 (112)
T KOG3449|consen 2 KYVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG--K----DIEELIA 56 (112)
T ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC--C----CHHHHHH
Confidence 45677888888888899999999999999999999999999998864 2 5666554
No 117
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=1.2 Score=39.09 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHH-HHHHHHHhcCCCCCCcccHHHHH
Q 031234 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLST-IRLLMFLFRNPHDSLRIGPKEFA 137 (163)
Q Consensus 70 ~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~-v~~L~~~~D~~d~dG~I~~eEF~ 137 (163)
..+-+..++++++|+..|..++|+|+.+-|+++|...+..+++.. |..+-+.+|. ..-|-|-.++|.
T Consensus 302 ~~~~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~p-E~~~iil~~d~l 369 (449)
T KOG2871|consen 302 VVPENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDP-ESLGIILLEDFL 369 (449)
T ss_pred cCCCCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccCh-hhcceEEecccc
Confidence 345555789999999999999999999999999998885555443 3333334454 555556555554
No 118
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=83.67 E-value=5.9 Score=28.73 Aligned_cols=55 Identities=5% Similarity=0.020 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
+..++.++-..++..|+.++++.+|+..|..+....+..+++.+.. .+++|.+.-
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G------Kdi~eLIa~ 57 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG------KDVEELIAA 57 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHHH
Confidence 4455666666788899999999999999999999999999998865 566776653
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.47 E-value=7.7 Score=37.34 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 74 GTHPDVIRSFEMVD--RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 74 ~~~~~l~~~F~~~D--~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
.+.++..+-|+.|+ +-..|+|+.+.-+.++-.. .|..-.+-+|..+.|. |+||+|+..||.-.|+.+
T Consensus 10 vT~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS--~LP~~VLaqIWALsDl-dkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKPGQGFITGDQARNFFLQS--GLPTPVLAQIWALSDL-DKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred cchHHHHHHHHHHhccCCCCCccchHhhhhhHHhc--CCChHHHHHHHHhhhc-CccccchHHHHHHHHHHH
Confidence 34455555555554 5689999999999887654 4677788888888999 999999999998777654
No 120
>PLN02228 Phosphoinositide phospholipase C
Probab=82.57 E-value=6 Score=36.57 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhc-CC-CCCHHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQ-RFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLWS 141 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~-~ls~~~v~~L~~~~D~~d----~dG~I~~eEF~~l~~ 141 (163)
..+++..+|..+-. ++.|+.++|..+|+.. +. ..+.+.++.|+..+.. . ..+.|+++.|...+.
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKH-HNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc-chhhcccCccCHHHHHHHhc
Confidence 45788999988853 3589999999999953 33 3567888999998864 2 346799999988764
No 121
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.47 E-value=12 Score=26.19 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHh-------cC----CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSS-------GY----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-------~g----~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
++++-+|..+ .|++|.|+..-|..+|+. .| +.-.+..++..|.... ..-.|+.++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~---~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ---LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT---T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC---CCCccCHHHHHHHHH
Confidence 5788899998 599999999999888883 12 1226677777776653 245699999998765
No 122
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=82.01 E-value=0.36 Score=35.05 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----HHHHHHhcchhcCCCCC
Q 031234 107 YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 107 g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l----~~~r~~iF~~~D~D~~~ 160 (163)
........+...|..+|. ++||.|+..|+..+...| +.++. .|+..|.|+.+
T Consensus 48 ~~~~~~~~~~W~F~~LD~-n~d~~L~~~El~~l~~~l~~~e~C~~~-F~~~CD~n~d~ 103 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDR-NKDGVLDRSELKPLRRPLMPPEHCARP-FFRSCDVNKDG 103 (113)
T ss_dssp TGGGGHHHHHHHHHHH---T-SSEE-TTTTGGGGSTTSTTGGGHHH-HHHHH-TT-SS
T ss_pred chhhhhhhhhhhHhhhcC-CCCCccCHHHHHHHHHHHhhhHHHHHH-HHHHcCCCCCC
Confidence 445567788999999999 999999999987765533 45777 88889987654
No 123
>PLN02952 phosphoinositide phospholipase C
Probab=81.89 E-value=7 Score=36.35 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHh-cCC-CCCHHHHHHHHHHhcC----C--CCCCcccHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQ-RFSLSTIRLLMFLFRN----P--HDSLRIGPKEFADLWS 141 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-~g~-~ls~~~v~~L~~~~D~----~--d~dG~I~~eEF~~l~~ 141 (163)
.+++..+|..+- .+.+.|+.++|..+|.. .+. ..+.+.++.|+..+-. . .....|+++.|..++.
T Consensus 37 r~ei~~lf~~~~-~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 37 PDDVKDVFCKFS-VGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred hHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 568999999885 34468999999999994 333 4677777777655421 0 1234589999988654
No 124
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=81.65 E-value=1.9 Score=37.62 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH--HHHHHHHhc
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGY---QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--LGQWRVSIL 151 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g---~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~--l~~~r~~iF 151 (163)
.+|+.+|+.+-.+.++.+....+..+-+.+. ..+-.+.+-.||..+|. +.|+.|+..|...+..- -..++. .|
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~-N~Dl~Ld~sEl~~I~ldknE~Cikp-Ff 288 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDT-NYDLLLDQSELRAIELDKNEACIKP-FF 288 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhcccc-ccccccCHHHhhhhhccCchhHHHH-HH
Confidence 4588899988777777777776666544332 23557889999999999 99999999998887542 133455 66
Q ss_pred chhcCCC
Q 031234 152 TDYSLNF 158 (163)
Q Consensus 152 ~~~D~D~ 158 (163)
...|...
T Consensus 289 nsCD~~k 295 (434)
T KOG3555|consen 289 NSCDTYK 295 (434)
T ss_pred hhhcccc
Confidence 6666543
No 125
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.56 E-value=4.5 Score=35.09 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 031234 12 QSYAPSAPSLPETHNNSSYNN 32 (163)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (163)
+.|+.+.|+.|+++....+++
T Consensus 140 P~ys~~~~~~p~p~p~~~~~~ 160 (365)
T KOG2391|consen 140 PVYSRSLPSPPPPYPQTEYNT 160 (365)
T ss_pred ccccCCCCCCCCCCCcccCCC
Confidence 567777777777766665554
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=79.88 E-value=3.6 Score=38.38 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH------HHHHHHhcchhcCCCC
Q 031234 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRVSILTDYSLNFQ 159 (163)
Q Consensus 110 ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l------~~~r~~iF~~~D~D~~ 159 (163)
.+...++.+|+++|+ +.+|.|+|.+|+..+..| +++.- +|+.||.++.
T Consensus 552 ~s~~~~~rlF~l~D~-s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l-~y~lh~~p~~ 605 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDD-SMTGLLTFKDLVSGLSILKAGDALEKLKL-LYKLHDPPAD 605 (671)
T ss_pred HHHHHHHHHHHhccc-CCcceeEHHHHHHHHHHHHhhhHHHHHHH-HHhhccCCcc
Confidence 566677889999999 999999999999877654 56677 8888887754
No 127
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=1.1 Score=40.77 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHH-----hcCCCCCHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALS-----SGYQRFSLS 113 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~-----~~g~~ls~~ 113 (163)
.++|.-+|++.|.|+||.|+.+||+.++. +.|+.|.+.
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe~ 306 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPES 306 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCCC
Confidence 57899999999999999999999999988 345555544
No 128
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=79.59 E-value=14 Score=26.63 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=34.5
Q ss_pred eeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 94 Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
|+.++++.+|...|..++.+.+..+++.+.. ++++|.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG------k~V~eli~ 55 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG------KNIDEVIS 55 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC------CCHHHHHH
Confidence 9999999999999999999999999998865 56777664
No 129
>PLN02222 phosphoinositide phospholipase C 2
Probab=79.53 E-value=7.1 Score=36.18 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHh-cCC-CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-~g~-~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
..++..+|..+-. ++.++.++|..+|.. .+. ..+.+.++.||..+..-...+.|+++.|...+.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3589999998853 479999999999994 343 467888999998763202456799999998764
No 130
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.77 E-value=18 Score=25.16 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=43.0
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH---------HHHHHHhcchh
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---------GQWRVSILTDY 154 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l---------~~~r~~iF~~~ 154 (163)
.|+.+||...-+..+..++.+.++.++..+.. ..-.-.+-+|=..++..| +++.+ +|..|
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~-k~inIfn~~~r~~llkeia~iT~p~ta~~vn~-Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRG-KNINIFNEQERKKLLKEIAKITSPQTAKQVNE-LFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHH
Confidence 68899999999999999999999999988876 433334444444565555 34555 66654
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=78.69 E-value=8.6 Score=35.80 Aligned_cols=52 Identities=8% Similarity=-0.003 Sum_probs=41.8
Q ss_pred CCCceeHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGY--QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g--~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
+.|.++.+|++.+.+.+. ......+|+.|+..+.. + .+.|+.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-G-GGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-C-CCccCHHHHHHHHHHh
Confidence 568999999998888653 33478899999999976 4 4689999999988754
No 132
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.86 E-value=6.8 Score=35.22 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
+.++.+-+.+|.|.+|-|+.+|--.+|++ +.++-...+-++-| -. .|..|+.+|+-..|..
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f---H~--dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF---HG--DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc---cC--CccceeHHHHHHHHHh
Confidence 56888889999999999999999999983 44444444433322 22 3567999998777753
No 133
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=77.59 E-value=6.9 Score=31.84 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHh-cCCCCCHH-HHHHHHHH--hcCCCCCCcccHHHHHHH
Q 031234 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLS-TIRLLMFL--FRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 72 pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~-~g~~ls~~-~v~~L~~~--~D~~d~dG~I~~eEF~~l 139 (163)
-|.++-.++.+.+.+|.|.+|+|+..|+.-+++. ..-.+..+ .+..|.+. +|. .+.|...-..|...
T Consensus 130 apQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDV-skeGV~GAknFFeA 200 (244)
T KOG0041|consen 130 APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDV-SKEGVSGAKNFFEA 200 (244)
T ss_pred CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccch-hhhhhhhHHHHHHH
Confidence 4566778999999999999999999999888883 23344333 33344444 677 67787777777654
No 134
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=77.44 E-value=11 Score=25.07 Aligned_cols=49 Identities=4% Similarity=0.045 Sum_probs=33.0
Q ss_pred eeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 94 Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
|+.+++.++++..+..++..++..|++.-+. .+--.++=+.+..++..|
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~-~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDE-KGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCC-ccccccChHHHHHHHHHH
Confidence 5557889999988999999999998877554 333334444444444433
No 135
>PLN02230 phosphoinositide phospholipase C 4
Probab=76.72 E-value=13 Score=34.69 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcC--C-CCCHHHHHHHHHHhcCC------CCCCcccHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGY--Q-RFSLSTIRLLMFLFRNP------HDSLRIGPKEFADLWS 141 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g--~-~ls~~~v~~L~~~~D~~------d~dG~I~~eEF~~l~~ 141 (163)
..+++.+|..+- ++.+.++.++|..+|+.-. . ..+.+.++.++..+... -..+.|+++.|...+.
T Consensus 28 ~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 28 VADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred cHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 479999999995 3448999999999999532 2 45677777777655220 1234699999988553
No 136
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=76.69 E-value=4.1 Score=27.26 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 108 QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 108 ~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
..++.+.+..|...|+. -..++|+-+||+..++.+
T Consensus 20 ~~l~~~~~~~l~~~Y~~-~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 20 KHLPPSKMDLLQKHYEE-FKKKKISREEFVRKLRQI 54 (70)
T ss_pred HHCCHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Confidence 34566667777777765 567889999998877654
No 137
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=76.31 E-value=14 Score=26.99 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHH
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFA 137 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~ 137 (163)
+..++.++-..++..|+.++++.+|+..|..+....+..+++.+.. .+++|.+
T Consensus 3 yvaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g------K~i~eLI 55 (113)
T PLN00138 3 VVAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG------KDITELI 55 (113)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC------CCHHHHH
Confidence 3445555555677789999999999999999999999999988865 4566655
No 138
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=75.83 E-value=19 Score=26.05 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
..-++| ++. .|+.++++.+|+..|..+....+..++..+.. ++++|.+.
T Consensus 7 aLLL~~-~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL~G------kdIeElI~ 55 (106)
T PRK06402 7 ALLLHS-AGK-EINEDNLKKVLEAAGVEVDEARVKALVAALED------VNIEEAIK 55 (106)
T ss_pred HHHHHh-cCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHH
Confidence 334444 333 79999999999999999999999999988865 66777654
No 139
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=75.33 E-value=14 Score=26.85 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=35.5
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
.|+.+.|+.+|+..|..+....++.|+..++. ++++|.+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg------~~idE~i~ 55 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG------VDIDEVIK 55 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC------CCHHHHHH
Confidence 89999999999999999999999999998875 57777654
No 140
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.38 E-value=9.8 Score=28.16 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCCC--CCceeHHHHHHHHHhcC--------CCCC----------HHHHHHHHHHhcCCCCCCcccHHH
Q 031234 76 HPDVIRSFEMVDRDR--SGFIDENELQQALSSGY--------QRFS----------LSTIRLLMFLFRNPHDSLRIGPKE 135 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~--sG~Is~~EL~~aL~~~g--------~~ls----------~~~v~~L~~~~D~~d~dG~I~~eE 135 (163)
...+.++|+.+..+. +..|+..|+..+|..+. .... +-.+..|+..||. +.+|+|..-.
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~-~rtG~I~vls 118 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDS-QRTGKIRVLS 118 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-T-T--SEEEHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCC-CCCCeeehhH
Confidence 345778888776443 46799999999998542 1111 1144567888999 8999999999
Q ss_pred HHHHHH
Q 031234 136 FADLWS 141 (163)
Q Consensus 136 F~~l~~ 141 (163)
|...+.
T Consensus 119 ~KvaL~ 124 (127)
T PF09068_consen 119 FKVALI 124 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
No 141
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=74.02 E-value=7.3 Score=40.12 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCCHHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHH-------------HHHHHHhcchhcCCCCC
Q 031234 109 RFSLSTI---RLLMFLFRNPHDSLRIGPKEFADLWSCL-------------GQWRVSILTDYSLNFQN 160 (163)
Q Consensus 109 ~ls~~~v---~~L~~~~D~~d~dG~I~~eEF~~l~~~l-------------~~~r~~iF~~~D~D~~~ 160 (163)
.++++.+ ..+|..||+ +++|.+++.+|..+++.+ ..+.+ +....|.++.|
T Consensus 2246 GVtEe~L~EFs~~fkhFDk-ek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~-~ld~vDP~r~G 2311 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDK-EKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEE-ILDLVDPNRDG 2311 (2399)
T ss_pred CCCHHHHHHHHHHHHHhch-hhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHH-HHHhcCCCCcC
Confidence 4565544 457888999 999999999999998865 15777 78888877654
No 142
>PLN02223 phosphoinositide phospholipase C
Probab=73.92 E-value=14 Score=33.95 Aligned_cols=66 Identities=5% Similarity=-0.060 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHH---Hh-cC-CCCCHHHHHHHHHHhcCCC--------CCCcccHHHHHHHH
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQAL---SS-GY-QRFSLSTIRLLMFLFRNPH--------DSLRIGPKEFADLW 140 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL---~~-~g-~~ls~~~v~~L~~~~D~~d--------~dG~I~~eEF~~l~ 140 (163)
+..++++++|..+ .++.|.++.+.|.++| .. .+ ...+.+.++.|+..+-. . ....|+++.|..++
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKR-RKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh-hcccchhhhhccccCHHHHHHHh
Confidence 3457899999998 4788999999999998 42 23 35677777777776532 1 12569999998865
Q ss_pred H
Q 031234 141 S 141 (163)
Q Consensus 141 ~ 141 (163)
.
T Consensus 91 ~ 91 (537)
T PLN02223 91 F 91 (537)
T ss_pred c
Confidence 4
No 143
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=73.34 E-value=7.7 Score=21.89 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.9
Q ss_pred CCcccHHHHHHHHHHHHHHHH
Q 031234 128 SLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 128 dG~I~~eEF~~l~~~l~~~r~ 148 (163)
.|+|+++|++.+..++..|.+
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYE 22 (33)
T ss_pred CceecHHHHHHHHHHHHHHHH
Confidence 478999999999998877766
No 144
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=71.47 E-value=7 Score=27.02 Aligned_cols=52 Identities=15% Similarity=-0.038 Sum_probs=37.4
Q ss_pred CCCceeHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSG--YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~--g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
-||.|+..|...+-..+ ...++.+..+.++..+.. .....+++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEA-LEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHH
Confidence 47889988887766632 246778888888877776 55666888888876553
No 145
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=67.21 E-value=13 Score=24.73 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHH--------HHHHHHhcchhc
Q 031234 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------GQWRVSILTDYS 155 (163)
Q Consensus 114 ~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l--------~~~r~~iF~~~D 155 (163)
+|+.|+..+.. +.+.|+.++|+.++... .++.. ++.+|.
T Consensus 1 ei~~if~~ys~--~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~-li~~~~ 47 (83)
T PF09279_consen 1 EIEEIFRKYSS--DKEYMTAEEFRRFLREEQGEPRLTDEQAKE-LIEKFE 47 (83)
T ss_dssp HHHHHHHHHCT--TSSSEEHHHHHHHHHHTSS-TTSSHHHHHH-HHHHHH
T ss_pred CHHHHHHHHhC--CCCcCCHHHHHHHHHHHhccccCcHHHHHH-HHHHHc
Confidence 46677777754 56788888888887642 44555 666654
No 146
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.06 E-value=35 Score=33.08 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=51.9
Q ss_pred CCCCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 69 ~~~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
..+.+.+...+...|+.+.. ++|.++.+..+-+|... .++.+.+-.+-..-|. +.+|.+++.||...|..+
T Consensus 121 p~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~-d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNS--KLPSDVLGRIWELSDI-DKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred CCCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcC--CCChhhhccccccccc-cccCCCChhhhhhhhhHH
Confidence 34555566678888988875 58899999888887643 4555555555566677 899999999998776644
No 147
>PHA02105 hypothetical protein
Probab=65.57 E-value=9.2 Score=24.91 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=36.3
Q ss_pred ceeHHHHHHHHHhc---CCCCCHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHH
Q 031234 93 FIDENELQQALSSG---YQRFSLSTIRLLMFLFRNP-HDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 93 ~Is~~EL~~aL~~~---g~~ls~~~v~~L~~~~D~~-d~dG~I~~eEF~~l~~~l 143 (163)
+++.+|++.++... .+.+..+.+++|-..|..| -+-..++|+||.+++-.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~i 58 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFI 58 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccc
Confidence 46778888888743 4577888888877776652 244579999998887544
No 148
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=63.65 E-value=20 Score=21.70 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
+.......|+.+|.. +.+.+..++..+...+| ++...|+.+|..-
T Consensus 7 ~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 7 FTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 555566778888875 45888888888887765 7788888887643
No 149
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=62.11 E-value=14 Score=32.47 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.9
Q ss_pred CcccHHHHHHHHH
Q 031234 129 LRIGPKEFADLWS 141 (163)
Q Consensus 129 G~I~~eEF~~l~~ 141 (163)
.|+-|.||+.++.
T Consensus 41 lRL~FNeFi~tma 53 (379)
T PF11593_consen 41 LRLQFNEFIQTMA 53 (379)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 150
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=61.47 E-value=17 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=25.7
Q ss_pred cCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 87 D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
..|.+|+++.+||.+++..-+..++.+.++.++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 36789999999999999987788999999999877554
No 151
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=60.80 E-value=29 Score=24.79 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=35.5
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
|..-.|+.++++.+|+..|..+....+..+++.+.. .+++|++.
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g------k~i~elIa 56 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKALEG------KDIKDLLS 56 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC------CCHHHHhh
Confidence 345579999999999999999999998888887764 56667654
No 152
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.33 E-value=54 Score=27.45 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHh-cCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 75 THPDVIRSFEMV-DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 75 ~~~~l~~~F~~~-D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
....+.++|..+ |.+.+..|..+-+..+++.+|.....-.+-.|--.++. ..-+.++.+||+.-|..+
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A-~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGA-ATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhcc-chhhhhhHHHHHHHHHHc
Confidence 345666777654 55555789999999999998876554444334444555 566789999999866543
No 153
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=59.71 E-value=19 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 88 RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 88 ~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
.|.+|.++.+||.++++..+..++.+.+++++..=|+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 4789999999999999876678999999988865444
No 154
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.20 E-value=22 Score=27.20 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=43.5
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHH--hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 81 RSFEMVDRDRSGFIDENELQQALS--SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~--~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
-+|+..+ -||.++..|...+.. +-.+.++...+..|+..... -+...|++-.|...++
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~-~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEE-AGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 5777775 567788888766555 33578899999999888766 5667798889987665
No 155
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.54 E-value=25 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
+.|+..=+ ++--|+++-++..+...|.+.++..++++++.+..
T Consensus 20 ~~~~k~l~-~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 20 KYMEKQLK-ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred HHHHHHHH-HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 44444432 34479999999999999999999999999987653
No 156
>PRK00523 hypothetical protein; Provisional
Probab=58.35 E-value=27 Score=23.55 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 80 ~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
++.|+..=+ ++=-|+++-++..+...|.+.++..++++++.++.
T Consensus 27 rk~~~k~l~-~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk~ 70 (72)
T PRK00523 27 KKMFKKQIR-ENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKN 70 (72)
T ss_pred HHHHHHHHH-HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 345555533 34479999999999999999999999999987753
No 157
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=58.22 E-value=13 Score=24.18 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=32.3
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
+.++-|+..+|.+.|...+..++.+.|+..++.++.
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~ 44 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMER 44 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 355679999999999988999999999999999987
No 158
>PHA00649 hypothetical protein
Probab=58.11 E-value=32 Score=23.20 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=14.4
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 118 LMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 118 L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
.+..+.. |-+.-...|||..=+..++.||+
T Consensus 22 ~~~~LGV-D~~~P~~VEEFr~D~~~~Rr~RK 51 (83)
T PHA00649 22 VFAILGV-DVDVPEQVEEFREDLRFGRRMRK 51 (83)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333333 33344444555555555555554
No 159
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=58.11 E-value=44 Score=21.42 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=12.0
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHH
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRL 117 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~ 117 (163)
.++.+||.+.+..++..++...+..
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~ 33 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLI 33 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHH
Confidence 3455555555555544444444433
No 160
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.25 E-value=55 Score=26.69 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCCCCceeHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 88 RDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 88 ~d~sG~Is~~EL~~aL~~~g~-~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
...||+|+..|-..++.++.. .++.+.-..|..++.. -|+.++.+...
T Consensus 121 AkaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~-----PlD~~~ia~~a 169 (225)
T COG2979 121 AKADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQ-----PLDPDEIAAAA 169 (225)
T ss_pred HhhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC-----CCCHHHHHHHh
Confidence 468999999999998864433 2333433444445544 16666655544
No 161
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=56.61 E-value=10 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.9
Q ss_pred CCCCceeHHHHHHHHHh
Q 031234 89 DRSGFIDENELQQALSS 105 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~ 105 (163)
-..|++..+||+.++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 36899999999988864
No 162
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=56.60 E-value=27 Score=21.01 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHHHHhc--CCCCCceeHHHHHHHHHh
Q 031234 77 PDVIRSFEMVD--RDRSGFIDENELQQALSS 105 (163)
Q Consensus 77 ~~l~~~F~~~D--~d~sG~Is~~EL~~aL~~ 105 (163)
..+..+|+.+- .+...+++..||+++|..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45777888774 245667899999988873
No 163
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=56.49 E-value=40 Score=24.45 Aligned_cols=54 Identities=6% Similarity=0.146 Sum_probs=36.9
Q ss_pred HhcCCCCCceeHHHHHHHHHh----------cCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031234 85 MVDRDRSGFIDENELQQALSS----------GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 85 ~~D~d~sG~Is~~EL~~aL~~----------~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
.+|...+-+|+.++++++++. .|..++...+-++|.+-.. .+...+..+=...+
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~-~g~~~lp~~~L~ql 74 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEES-GGEPVLSTDFLTQI 74 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHh-CCCCCCCHHHHHHH
Confidence 578888999999999998883 2566777777777766655 45444554433333
No 164
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=56.37 E-value=23 Score=23.78 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=32.3
Q ss_pred eHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 95 DENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 95 s~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
+..+|.++| .|.+++.+.++..+..++..+--+.|+.+||+.++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 467777777 56788899999888888541234579999988763
No 165
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.27 E-value=18 Score=33.84 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHHHhc---C-----CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSG---Y-----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~---g-----~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
..++.++..|.++|. .+|.++.+|+.++++.. + .....+....++.+.|. +..+.+..+++..++..
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDP-DHKGYITNEDLEILLLQ 89 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccc-cccceeeecchhHHHHh
Confidence 346789999999996 99999999999988832 2 22334455667777777 77778988888776653
No 166
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=56.07 E-value=9.3 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 109 ~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.|+++.++.|-.++-. |..|+|.|.||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pv-n~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPV-NAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B--TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcC-CccCCEeHHHHHHHcc
Confidence 4788888888888888 8999999999987654
No 167
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=55.80 E-value=10 Score=28.64 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=28.4
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC------CCCCcccHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNP------HDSLRIGPKEFADLWSC 142 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~------d~dG~I~~eEF~~l~~~ 142 (163)
.-+.|+..||.++=+-+. .+..+++.++..|... +..+.|+|+.|..+|+.
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 346788888887765322 2445777777777430 23558999999998874
No 168
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=55.79 E-value=46 Score=25.80 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=44.4
Q ss_pred HHHHHHHHHh-----cCCCCCceeHHHHHHHHH-hcC-----------CCCCHHHHHHHHHHh-cCCCCCCcccHHHHHH
Q 031234 77 PDVIRSFEMV-----DRDRSGFIDENELQQALS-SGY-----------QRFSLSTIRLLMFLF-RNPHDSLRIGPKEFAD 138 (163)
Q Consensus 77 ~~l~~~F~~~-----D~d~sG~Is~~EL~~aL~-~~g-----------~~ls~~~v~~L~~~~-D~~d~dG~I~~eEF~~ 138 (163)
.++...|-.. |.+.++.|+..+|-.+|+ .+| .+++.+.++.|+..+ +. -+...++-|++..
T Consensus 78 P~~~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~-akae~~dtE~Ye~ 156 (175)
T PF04876_consen 78 PEFCHSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEM-AKAESSDTEHYEK 156 (175)
T ss_pred hHHHHHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHH-HhccCCchHHHHH
Confidence 3455555433 223478899999999998 333 467777777665543 11 1233478899999
Q ss_pred HHHHHHHH
Q 031234 139 LWSCLGQW 146 (163)
Q Consensus 139 l~~~l~~~ 146 (163)
+|+++-.+
T Consensus 157 vwkKmPaY 164 (175)
T PF04876_consen 157 VWKKMPAY 164 (175)
T ss_pred HHHHhhHH
Confidence 99987543
No 169
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=54.42 E-value=80 Score=22.81 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=37.9
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
..-++| .+. .|+.+.+..+|+..|..+....+..++..+.. .+++|.+.
T Consensus 7 aLLL~~-~G~-eITae~I~~IL~AAGveVd~~~~~ala~aL~g------kdIeElIa 55 (106)
T cd05832 7 ALLLHY-AGK-EINEENLKKVLEAAGIEVDEARVKALVAALEE------VNIDEAIK 55 (106)
T ss_pred HHHHHh-cCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC------CCHHHHHH
Confidence 334444 333 79999999999999999999999999988864 56666654
No 170
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=53.96 E-value=72 Score=22.18 Aligned_cols=51 Identities=18% Similarity=-0.046 Sum_probs=36.7
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.+-.|...+++.+|.....-....+...|-..+|. ..++.|+.=||-.+.+
T Consensus 19 ~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDl-T~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDL-TCNDYISNFEFDVFTR 69 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-T-TSSSEEEHHHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhc-ccCCccchhhhHHHHH
Confidence 44579999999999976444444666777788899 8899999988865543
No 171
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.66 E-value=41 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 80 ~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
++.|+..=+| +=.|+++-++..+...|...++..++++++.+.+
T Consensus 26 rk~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 26 RKQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSIIK 69 (71)
T ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 3445554433 4479999999999999999999999999887643
No 172
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=51.99 E-value=40 Score=25.42 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=25.2
Q ss_pred CCCceeHHHHHHHHHh-cCCCCCHHHHHHHHHHhcC
Q 031234 90 RSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~-~g~~ls~~~v~~L~~~~D~ 124 (163)
..+.|+.+.|+.+|+. +...++.+.|+.||..|..
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 3568999999999994 5667999999999999865
No 173
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=51.97 E-value=30 Score=29.64 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031234 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 91 sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
+|.|+.+|-.+.++.....+..+.++.+++.++ |+-+||..+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg-------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG-------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC-------CCHHHHHHH
Confidence 566666666666665444444555555555443 445555544
No 174
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=51.23 E-value=95 Score=24.60 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHhcCCCCCceeHHHHHHHHHhc----------CCCCCHHHHHHHHHHhcC
Q 031234 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSG----------YQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 75 ~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~----------g~~ls~~~v~~L~~~~D~ 124 (163)
...+++.+|.. .+.-.|...+|...|... |..++...+-.+++.|+.
T Consensus 101 LL~DIr~vf~~---~~~~~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI 157 (184)
T PF12307_consen 101 LLADIREVFEA---GGEDRIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGI 157 (184)
T ss_pred hHHHHHHHHcc---CCCCcccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCC
Confidence 34678888864 334589999999999842 567899999999999986
No 175
>PF13551 HTH_29: Winged helix-turn helix
Probab=48.84 E-value=66 Score=21.82 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHH-H-hcCCCCCHHHHHHHHHHh
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-S-SGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL-~-~~g~~ls~~~v~~L~~~~ 122 (163)
+.+...+.+.+.+.....++....+..+|...| . ..+..++...|..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 445555566666665443333468889998855 4 567788999998888753
No 176
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=48.77 E-value=72 Score=31.51 Aligned_cols=64 Identities=11% Similarity=0.259 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHh----------cCCCCCHHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSS----------GYQRFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLWS 141 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~----------~g~~ls~~~v~~L~~~~D~~d----~dG~I~~eEF~~l~~ 141 (163)
.++.++|..+-.+..-+++.++|..+|+. +...+..+.++.||..+.. + ..|.|+.+-|+..+.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp-~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEP-NSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCC-chhhhhccccchhhhHHHhh
Confidence 57889999998777789999999999994 2345678899999999865 4 478999999988543
No 177
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=48.36 E-value=51 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=19.0
Q ss_pred eeHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 94 IDENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 94 Is~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
|+.++++.+.+.....++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45667777777666677777766655444
No 178
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=48.00 E-value=1.2e+02 Score=22.93 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=44.6
Q ss_pred HHHHHHHHH--hcCCCCCceeHHHHHHHHH-hcC--CCCCHHHHH-HHHHHhcCCCCCCcccHHHHHHHHHHH-HHHHHH
Q 031234 77 PDVIRSFEM--VDRDRSGFIDENELQQALS-SGY--QRFSLSTIR-LLMFLFRNPHDSLRIGPKEFADLWSCL-GQWRVS 149 (163)
Q Consensus 77 ~~l~~~F~~--~D~d~sG~Is~~EL~~aL~-~~g--~~ls~~~v~-~L~~~~D~~d~dG~I~~eEF~~l~~~l-~~~r~~ 149 (163)
..++.+|.. -+.-....++.++|..-+. +.| .+.+.+.+. .+|+.++. .|+..|+..+...| +.+++
T Consensus 57 ~~ir~~~~~~p~~~~~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r-----~Is~gei~~v~s~Lp~~~~e- 130 (135)
T COG5502 57 MEIRDILVDGPDLGPPKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKR-----HISPGEIDKVRSRLPKEIRE- 130 (135)
T ss_pred HHHHHHHhcCCcCCCCCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHH-----hCCHHHHHHHHHHCcHHHHH-
Confidence 567777764 3334566778888765444 444 455666665 67777765 39999999988877 34555
Q ss_pred hc
Q 031234 150 IL 151 (163)
Q Consensus 150 iF 151 (163)
+|
T Consensus 131 lw 132 (135)
T COG5502 131 LW 132 (135)
T ss_pred hc
Confidence 54
No 179
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.79 E-value=1.8e+02 Score=24.88 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 031234 3 NYSGSYSSSQSYAPSAPSLPETHNNSSYN 31 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (163)
.|...|....-++++.|+.|.+.+|.++-
T Consensus 191 syp~Py~p~p~~q~p~p~~p~~~~yiS~~ 219 (338)
T KOG0917|consen 191 SYPSPYDPSPYHQDPMPSGPYTGIYISHE 219 (338)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcceeecc
Confidence 34455666666666788888887776443
No 180
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=47.75 E-value=31 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
-+...+..+|.+++|+|..-+++.+|..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4667888999999999999999998864
No 181
>PRK01844 hypothetical protein; Provisional
Probab=47.53 E-value=48 Score=22.37 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 80 ~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
++.|+.+=+ ++=-|+++-++..+...|.+.++..++++++.++.
T Consensus 26 rk~~~k~lk-~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk~ 69 (72)
T PRK01844 26 RKYMMNYLQ-KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNK 69 (72)
T ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 344555533 34479999999999999999999999999987743
No 182
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=47.52 E-value=36 Score=22.45 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHhcCCCCCceeHHHHHHHHHh----------cCCCCCHHHHHHHHHHh
Q 031234 84 EMVDRDRSGFIDENELQQALSS----------GYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 84 ~~~D~d~sG~Is~~EL~~aL~~----------~g~~ls~~~v~~L~~~~ 122 (163)
+.+|...+.+|+.+++.++++. .|..++...+-+++.+-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 3578999999999999999984 25556666665555443
No 183
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=46.92 E-value=76 Score=30.41 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
..+++.|+..|..++++|...++.++......+. ++..+|..+-. +.+.++.++++.++..+
T Consensus 172 ~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~--~~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 172 SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSH--GKEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhC--CCCccCHHHHHHHHHHh
Confidence 4577788888888899999999888877665444 55556666654 35677777766665543
No 184
>PF14178 YppF: YppF-like protein
Probab=46.31 E-value=81 Score=20.52 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=12.5
Q ss_pred CcccHHHHHHHHHHHHH
Q 031234 129 LRIGPKEFADLWSCLGQ 145 (163)
Q Consensus 129 G~I~~eEF~~l~~~l~~ 145 (163)
|.|++.||+.+++.|+.
T Consensus 35 gei~i~eYR~lvreLE~ 51 (60)
T PF14178_consen 35 GEISINEYRNLVRELEA 51 (60)
T ss_pred CcccHHHHHHHHHHHHH
Confidence 66888888888777654
No 185
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=46.02 E-value=80 Score=21.59 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=36.0
Q ss_pred CCCceeHHHHHHHHH----hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 90 RSGFIDENELQQALS----SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~----~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+...=+...++++++ -++.+++.+..+.|+..+-. ++- ..++..+..+|.
T Consensus 24 ~adlqdE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~-~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 24 KADLQDEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIIN-QKI-PNDMNHLMKMMN 77 (79)
T ss_pred hhhcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-CCC-CcCHHHHHHHHc
Confidence 333556677787777 35889999999999988876 443 677777776664
No 186
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=45.41 E-value=30 Score=31.70 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-------CCCCCcccHHHHHHHH
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN-------PHDSLRIGPKEFADLW 140 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~-------~d~dG~I~~eEF~~l~ 140 (163)
+|..+-..++++|..--|..+|++.|.+-++-.++.+|.++.. ...-+.|+.+.|..+.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 5666645567999999999999999988888777777666522 0234578999998764
No 187
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=45.38 E-value=1.1e+02 Score=21.88 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~ 138 (163)
..-++| ++. .|+.+.+..+|+..|..+....+..++..+.. .++++.+.
T Consensus 7 ~Lll~~-~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g------k~i~eli~ 55 (105)
T TIGR03685 7 ALLLHS-AGK-EINEENLKAVLEAAGVEVDEARVKALVAALEG------VNIEEAIK 55 (105)
T ss_pred HHHHHh-cCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC------CCHHHHHH
Confidence 334444 333 79999999999999999999999999988864 55666553
No 188
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.49 E-value=39 Score=20.51 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=23.8
Q ss_pred CCCcee-HHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 90 RSGFID-ENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 90 ~sG~Is-~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
+.|.|+ ..++.+.|...|+.++.+.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 567776 555556666778899999888887653
No 189
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=42.64 E-value=87 Score=21.26 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCCceeHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g-~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
-||.|+..|...+-+.+. ..+.....+.++..+.. ......++.+|...+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 63 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNE-GKESDFGLEEYARQFR 63 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hCcCCCCHHHHHHHHH
Confidence 467788877665554211 23333344444444432 2222256667665543
No 190
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=41.80 E-value=77 Score=21.66 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=21.9
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFR 123 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D 123 (163)
.|+.++++.+.+.....++++++..+...++
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLN 32 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3677788888777777788877766655443
No 191
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=41.74 E-value=44 Score=24.86 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=37.7
Q ss_pred CCCceeHHHHHHHHHhc---------CCCCCHHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 031234 90 RSGFIDENELQQALSSG---------YQRFSLSTIRLLMFLFRNPHDSL-RIGPKEFADL 139 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~---------g~~ls~~~v~~L~~~~D~~d~dG-~I~~eEF~~l 139 (163)
++-.|+.+||.+++... ...++.++++.+...+.. ...+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~-~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEK-APKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHh-ccccCCCCHHHHHHH
Confidence 66789999999999842 235788999999998887 5544 4888886554
No 192
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=41.48 E-value=42 Score=23.19 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
.+|.++++.......| |..+++.+-| .++.++|+..+..+-.
T Consensus 50 ~~Vl~~i~~~~~~~~G-v~v~~I~~~l-----~~~~~~v~~al~~L~~ 91 (102)
T PF08784_consen 50 DKVLNFIKQQPNSEEG-VHVDEIAQQL-----GMSENEVRKALDFLSN 91 (102)
T ss_dssp HHHHHHHHC----TTT-EEHHHHHHHS-----TS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCc-ccHHHHHHHh-----CcCHHHHHHHHHHHHh
Confidence 4556666653334555 9999888765 6788888888877643
No 193
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=39.50 E-value=65 Score=26.72 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCCCceeHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 89 DRSGFIDENELQQALSSG--YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~--g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.-||.|+..|+. +++.+ ...++.+..+.+...++. .+....++++|+..+.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~-~k~~~~~l~~~~~~~~ 119 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE-GKEPDFPLREKLRQFR 119 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH-hcccCCCHHHHHHHHH
Confidence 468999999998 44432 245677764455555554 4445588888877554
No 194
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=38.52 E-value=45 Score=26.34 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 113 ~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
++|++|-..+|+ | +=.+.||+.+|+.++
T Consensus 68 eEIKQIKdiMDK-D---FDKL~EFVEIMKeMQ 95 (205)
T PF15079_consen 68 EEIKQIKDIMDK-D---FDKLHEFVEIMKEMQ 95 (205)
T ss_pred HHHHHHHHHHhh-h---HHHHHHHHHHHHHHH
Confidence 566666666776 4 334779999988774
No 195
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=38.51 E-value=60 Score=25.71 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=33.1
Q ss_pred CCCCCceeHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 88 RDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 88 ~d~sG~Is~~EL~~aL~~~g~-~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
..-||.|+.+|-+.++..+.. .++.+.-+.|...+..| ++.+++....
T Consensus 90 AkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P-----~d~~~la~~v 138 (188)
T PF04391_consen 90 AKADGHIDEEERQRIEGALQELGLDAEERAWLQAELAAP-----LDPDALAAAV 138 (188)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-----CCHHHHHHhC
Confidence 468999999999999876543 46666666666666652 5666655443
No 196
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=38.25 E-value=51 Score=25.67 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCCc-----eeHHHHHHHHHhc----CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGF-----IDENELQQALSSG----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~-----Is~~EL~~aL~~~----g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
.+.+.|+.|-+-++-. ++-..+-.+++.. |..++.-.+...|..+.. -.-..|+|++|...+..|.
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg-~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKG-KKARTITFEEFKKALEELA 87 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccc-cccccccHHHHHHHHHHHH
Confidence 4555555554433322 4444455555532 345555566666666665 5667899999988887764
No 197
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.94 E-value=28 Score=36.16 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCC----HHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS----LSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls----~~~v~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
+.+.+.++++++|+.+|.+..|+|...++..+|+.+..++. .+. +.+.-.+-. ..+++|.+.+-.-+
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~-~~gd~V~f~d~L~a 1481 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPM-VSGDRVHCLDILFA 1481 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCc-CCCCeeehhhHHHH
Confidence 56777899999999999999999999999999996533221 111 222222333 45566666664433
No 198
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.72 E-value=99 Score=24.59 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=24.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 101 QALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 101 ~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+||..+-..-..+....+...|.. |+.|.|+...-+.|..
T Consensus 107 e~l~~w~~g~~~~l~~lV~~af~~-dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 107 ECLNEWAKGADPELRALVNRAFQV-DKEGNLNTSRILGLRR 146 (195)
T ss_pred HHHHHHhcCCChHHHHHHHHHHhc-CCCCCcCHHHHHHHHh
Confidence 455544333344444455566777 8888888887666644
No 199
>PF13276 HTH_21: HTH-like domain
Probab=37.14 E-value=1e+02 Score=19.02 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=29.3
Q ss_pred CCCCceeHHHHHHHHHhc-CCCCCHHHHHHHHHHhcC
Q 031234 89 DRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~-g~~ls~~~v~~L~~~~D~ 124 (163)
+..+.....-+...|+.. +..++...|..||..+..
T Consensus 16 ~~~~~yG~rri~~~L~~~~~~~v~~krV~RlM~~~gL 52 (60)
T PF13276_consen 16 ESKPTYGYRRIWAELRREGGIRVSRKRVRRLMREMGL 52 (60)
T ss_pred HcCCCeehhHHHHHHhccCcccccHHHHHHHHHHcCC
Confidence 455678888899999976 568999999999988765
No 200
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=36.82 E-value=78 Score=30.65 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
+..+..+++.||..++|.|..-+|+..+-.+......+..+-||..+.. ++ ..++-..|-.|+.
T Consensus 469 D~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~-~~-sq~~q~~l~lLL~ 532 (966)
T KOG4286|consen 469 DMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVAS-ST-SQCDQRRLGLLLH 532 (966)
T ss_pred HHHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcC-ch-hhHHHHHHHHHHH
Confidence 4456778889999999999999999999888777788888899998876 33 3454555554443
No 201
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=36.38 E-value=62 Score=28.46 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=41.0
Q ss_pred HHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 83 F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
...+|..+.|++...-++.+|..+...--.++++-++..+.+ .+|-+.+-.|..+...
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isd--s~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISD--SRGIMQEIQRDQFLHE 173 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHcc--chHHHHHHHHHHHHHH
Confidence 345688888999988888888855444446777777877765 6787766666665543
No 202
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.16 E-value=25 Score=28.01 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRL 117 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~ 117 (163)
+.++++|..||.++--..+.+++.++|...|.--...+|+.
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 56899999999999999999999999997665444444443
No 203
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=36.11 E-value=61 Score=16.53 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=6.0
Q ss_pred CCCCcccHHHHHH
Q 031234 126 HDSLRIGPKEFAD 138 (163)
Q Consensus 126 d~dG~I~~eEF~~ 138 (163)
++||.|+--+|..
T Consensus 3 N~DG~vna~D~~~ 15 (21)
T PF00404_consen 3 NGDGKVNAIDLAL 15 (21)
T ss_dssp TSSSSSSHHHHHH
T ss_pred CCCCcCCHHHHHH
Confidence 4445554444433
No 204
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=35.60 E-value=1.9e+02 Score=21.56 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH--hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALS--SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~--~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
...+.|..+...+.++|...-|.+.++ ..++....+.+..++..+-. +.---|+..+|.....
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~-~~~f~V~~~d~i~~A~ 86 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLN-DELFNVELKDFIREAI 86 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc-cccceecchHHHHHHH
Confidence 366788888888899999999998888 45778888888888884433 3444577777765543
No 205
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=35.31 E-value=26 Score=25.27 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=31.2
Q ss_pred CCCCceeHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 031234 89 DRSGFIDENELQQALSSG--YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~--g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~ 140 (163)
.-||.|+.+|+..+...+ ...++......++..++. .....+++.+|+..+
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADE-LKQEPIDLEELLREL 87 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCH-HHHHCCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence 368899999988777743 345566666676666654 333456777776543
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=34.69 E-value=1.4e+02 Score=24.56 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHH---hcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH----HHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALS---SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC----LGQWRVS 149 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~---~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~----l~~~r~~ 149 (163)
.++.++|...|..+.|.++. +..||+ ++|...+.+.-+.|+..|-+ + ..|.-.-|..+|.. .++..+
T Consensus 51 ~~~V~~f~~~~~~RRGHVeF--I~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g--~fvp~n~fQ~~F~hyp~Qq~c~i~- 124 (228)
T PF06239_consen 51 LEAVDIFKQRDVRRRGHVEF--IYAALKKMDEFGVEKDLEVYKALLDVFPK-G--KFVPRNFFQAEFMHYPRQQECAID- 124 (228)
T ss_pred HHHHHHHHhcCCCCcChHHH--HHHHHHHHHHcCCcccHHHHHHHHHhCCC-C--CcccccHHHHHhccCcHHHHHHHH-
Confidence 34667787778788887654 344555 67888888888999988865 2 34554455555532 233444
Q ss_pred hcchhcCCCCCCC
Q 031234 150 ILTDYSLNFQNPS 162 (163)
Q Consensus 150 iF~~~D~D~~~~~ 162 (163)
+.++...++.-|+
T Consensus 125 lL~qME~~gV~Pd 137 (228)
T PF06239_consen 125 LLEQMENNGVMPD 137 (228)
T ss_pred HHHHHHHcCCCCc
Confidence 5555555555554
No 207
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=34.65 E-value=42 Score=21.35 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccH
Q 031234 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGP 133 (163)
Q Consensus 73 p~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~ 133 (163)
+..++-++.+|.... +.+.|...+|.+.| .++...+..+++++.. .|.|.+
T Consensus 4 ~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~~---~GlV~~ 54 (60)
T PF01325_consen 4 ESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLAE---KGLVEY 54 (60)
T ss_dssp CHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHHH---TTSEEE
T ss_pred cHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHHH---CCCEEe
Confidence 344566888888775 77889999999886 5667888888888865 355544
No 208
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=33.41 E-value=70 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=20.1
Q ss_pred eeHHHHHHHHHhc------CCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 031234 94 IDENELQQALSSG------YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (163)
Q Consensus 94 Is~~EL~~aL~~~------g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l 139 (163)
++.+++..++... ...-+.++++.++...-. +-+-.|+=++-..+
T Consensus 150 ~~~~k~~~~i~~iK~~va~~~~~t~~eI~~IV~~~~~-~~~i~ls~~q~~~i 200 (225)
T PF06207_consen 150 IGDEKANAAIAEIKEEVAKQKPKTDEEIRNIVNNVLN-NYNINLSDEQIQQI 200 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 5555555555521 111255556555555433 22333444444333
No 209
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=32.94 E-value=1.4e+02 Score=21.56 Aligned_cols=78 Identities=6% Similarity=0.049 Sum_probs=46.0
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhcchhcCCCCCC
Q 031234 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRVSILTDYSLNFQNP 161 (163)
Q Consensus 82 ~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~~iF~~~D~D~~~~ 161 (163)
+|...=..+...|+.+--.++++.+-..-....+..++.-+.. .....|+.+....++..++.... .+..||.++.=|
T Consensus 29 ~F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~-~~~k~IskD~W~~~l~F~~~~~~-dls~Yde~~AWP 106 (117)
T PF03556_consen 29 TFDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEE-KYKKAISKDTWNQFLDFFKTVDE-DLSNYDEEGAWP 106 (117)
T ss_dssp HHHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHH-CT-SEEEHHHHHHHHHHHHH-HC-CHCC--TTSSS-
T ss_pred HHHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-cCCcCcChhHHHHHHHHHHhcCc-cccCCCCCCCCc
Confidence 4443323456678888777777743221112445555555554 45667999999999888888777 888899887655
No 210
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=32.74 E-value=94 Score=25.52 Aligned_cols=62 Identities=3% Similarity=0.063 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 031234 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146 (163)
Q Consensus 78 ~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~ 146 (163)
++..-|-.|=..+..+|+.+++.+.-+.. +.|+.|+..|+. .....-+-+.|..++..++++
T Consensus 147 el~~kyP~wL~~n~~~l~~ed~~rY~~Q~------~~v~~I~~~fE~-~~~~d~~~~~~~~i~~lmqem 208 (248)
T PF04614_consen 147 ELRDKYPEWLEENKSKLSAEDYERYEKQY------ELVKEICAIFEK-PPYDDEDPERREKIMELMQEM 208 (248)
T ss_dssp HHHHHHHHHHHHHCCCS-HHHHHHHHHHH------HHHHHHHHHHHH---TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCcCcCCHHHHHHHHHHH------HHHHHHHHHHcC-CCCCcccHHHHHHHHHHHHHH
Confidence 34444444434455577777777665543 356677777765 322222244455555554444
No 211
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=32.47 E-value=27 Score=30.45 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHh
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQALSS 105 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL~~ 105 (163)
.++.|+-+|.|+|.+|+.+|++.+|..
T Consensus 372 ~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 372 SRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhhcchhcccCCCceecHHHHhhhhcc
Confidence 566788889999999999999999874
No 212
>PF13592 HTH_33: Winged helix-turn helix
Probab=32.42 E-value=80 Score=19.79 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=27.7
Q ss_pred CCceeHHHHHHHHH-hcCCCCCHHHHHHHHHHhcC
Q 031234 91 SGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 91 sG~Is~~EL~~aL~-~~g~~ls~~~v~~L~~~~D~ 124 (163)
.+..+..+|+..+. ..|..++...|..|+.++..
T Consensus 2 ~~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G~ 36 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLGF 36 (60)
T ss_pred CCcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcCC
Confidence 35677888888888 67888999999999988764
No 213
>PHA02335 hypothetical protein
Probab=32.09 E-value=69 Score=23.38 Aligned_cols=12 Identities=8% Similarity=0.327 Sum_probs=5.9
Q ss_pred ceeHHHHHHHHH
Q 031234 93 FIDENELQQALS 104 (163)
Q Consensus 93 ~Is~~EL~~aL~ 104 (163)
.|+.+||..=|+
T Consensus 24 sVt~ddf~~Dlk 35 (118)
T PHA02335 24 SVTYDDFEEDLK 35 (118)
T ss_pred cccHHHHHHHHH
Confidence 455555554444
No 214
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=31.86 E-value=1e+02 Score=24.24 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=36.3
Q ss_pred eeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhcchhcCCCC
Q 031234 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRVSILTDYSLNFQ 159 (163)
Q Consensus 94 Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~~iF~~~D~D~~ 159 (163)
|+..+.+.-|+..|........+.++..+-. ++.|.| |+.|.. ++. +..+||.|+.
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~-~~~~~~-y~~~~~-------ikn-lm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMS-AGEGAM-YTNIQG-------IKN-LMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhc-CCCCce-eehHHH-------HHH-HHHhcCCCCc
Confidence 4566778888888888887777777777766 555543 344422 344 5556777654
No 215
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=31.46 E-value=1.1e+02 Score=23.09 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=30.8
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
..+...+.+||.+.|++.|..++..++-..++++..
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 355678999999999999999999999888887753
No 216
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=31.37 E-value=91 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=23.1
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFR 123 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D 123 (163)
.-+-+||...|...|..+++.++...++.+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 5577999999999999999999988888764
No 217
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=31.03 E-value=69 Score=21.00 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHh----cCCCCCHHHHHHHHHHh
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQALSS----GYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~aL~~----~g~~ls~~~v~~L~~~~ 122 (163)
+..+...++.+..--|-..+|+.++.. .|...+++.+..+|..|
T Consensus 25 l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 25 LEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 444454444333334556666766663 35566666666666543
No 218
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=30.82 E-value=61 Score=17.82 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhcch
Q 031234 134 KEFADLWSCLGQWRVSILTD 153 (163)
Q Consensus 134 eEF~~l~~~l~~~r~~iF~~ 153 (163)
++|..++.+|+.+++ ..++
T Consensus 7 d~f~eFY~rlk~Ike-~Hrr 25 (28)
T PF12108_consen 7 DPFSEFYERLKEIKE-YHRR 25 (28)
T ss_dssp -HHHHHHHHHHHHHH-HHHS
T ss_pred ChHHHHHHHHHHHHH-HHHh
Confidence 567777777877777 5444
No 219
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=30.73 E-value=30 Score=23.71 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=10.4
Q ss_pred CCCceeHHHHHHHHHh
Q 031234 90 RSGFIDENELQQALSS 105 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~ 105 (163)
-||.|+.+|...+.+.
T Consensus 15 aDG~v~~~E~~~i~~~ 30 (111)
T cd07176 15 ADGDIDDAELQAIEAL 30 (111)
T ss_pred hccCCCHHHHHHHHHH
Confidence 3567777776666664
No 220
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.52 E-value=33 Score=27.05 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMF 120 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~ 120 (163)
+.++++|..||.+.--..+.+++.++|...+.--...+|+.++.
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 56888999999888888899999999987665555666655554
No 221
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=30.08 E-value=29 Score=28.29 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQAL 103 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL 103 (163)
.-..+.|+-+|.|++|.|..+|-..+|
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhccc
Confidence 457889999999999999999987665
No 222
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.90 E-value=1.3e+02 Score=22.15 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
.+++.+-...++.++.+||.+.|+..+..++..+|=..+..+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 344444333457899999999999877888887776655554
No 223
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=29.87 E-value=1.2e+02 Score=17.89 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCCCChHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 031234 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121 (163)
Q Consensus 71 ~pp~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~ 121 (163)
+.+.....|..+|... . +.+..++..+...++ ++...|+.+|..
T Consensus 7 ~~~~~~~~L~~~f~~~---~--~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 7 FTPEQLEELEKEFQKN---P--YPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred CCHHHHHHHHHHHHhC---C--CCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 4455556677777532 2 677787777777664 567777777654
No 224
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=76 Score=25.75 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=32.2
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 88 RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 88 ~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
.|.+|..+.++|...++..+..++.+.+..++..-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999999999888865544
No 225
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=29.71 E-value=2.1e+02 Score=23.00 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCH-HHHHHHHHHhcCCCCCC-cccHHHHHHHHHH
Q 031234 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSL-STIRLLMFLFRNPHDSL-RIGPKEFADLWSC 142 (163)
Q Consensus 76 ~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~-~~v~~L~~~~D~~d~dG-~I~~eEF~~l~~~ 142 (163)
+++..+.|-.+ .+++.|+.-||+.+|.......+. ..++.+.+.+.. ...+ .|+.+=|..|...
T Consensus 122 d~~A~~~fL~~--E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l-~~~~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 122 DQEALRRFLQL--EGTPELETAELQYALATYYTKRDPEKTIQLLLRALEL-SNPDDNFNPEILKSLASI 187 (203)
T ss_pred cHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHH
Confidence 45556666554 689999999999999977655554 455566666666 4445 8999988887664
No 226
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=29.33 E-value=42 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=12.5
Q ss_pred CCcccHHHHHHHHHHHHHHH
Q 031234 128 SLRIGPKEFADLWSCLGQWR 147 (163)
Q Consensus 128 dG~I~~eEF~~l~~~l~~~r 147 (163)
+|.|+..||+..+.+-..++
T Consensus 42 ng~IsVreFVr~La~S~~yr 61 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYR 61 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHH
Confidence 57899999988655433333
No 227
>PF15565 Imm16: Immunity protein 16
Probab=29.17 E-value=1.5e+02 Score=21.39 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 96 ENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 96 ~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
+++|..+|.++....+.+.+..|+..|+.
T Consensus 15 ~e~Fe~~L~~l~~~~d~~~I~~L~~~F~D 43 (106)
T PF15565_consen 15 CEEFEEALNELAKYPDNDVIDDLCLIFDD 43 (106)
T ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhcC
Confidence 46677777777777777777777777775
No 228
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=39 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHH
Q 031234 79 VIRSFEMVDRDRSGFIDENELQQA 102 (163)
Q Consensus 79 l~~~F~~~D~d~sG~Is~~EL~~a 102 (163)
+..+.+.-|.|++|+|+..|+...
T Consensus 119 iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 119 IDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhcccccCCCceeeHHHHHhh
Confidence 445566668899999999998754
No 229
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=29.01 E-value=1.4e+02 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=19.8
Q ss_pred CceeHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 92 G~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
-.|+.+|++.+-+.....+++++++.+...+
T Consensus 387 ~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 387 QQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4577777777666666667776666655443
No 230
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=28.90 E-value=35 Score=24.04 Aligned_cols=18 Identities=28% Similarity=0.791 Sum_probs=11.3
Q ss_pred CCCcccHHHHHHHHHHHH
Q 031234 127 DSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 127 ~dG~I~~eEF~~l~~~l~ 144 (163)
.||.|+-++|..+|..+.
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 468999999999999764
No 231
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.38 E-value=3e+02 Score=27.52 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 113 ~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
.+|+.||..+.. ++.-.++.++|+.++..
T Consensus 221 ~eie~iF~ki~~-~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 221 PEIEEIFRKISG-KKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred hhHHHHHHHhcc-CCCccccHHHHHHHHhh
Confidence 467777877776 66577888888887763
No 232
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=27.96 E-value=29 Score=27.54 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMF 120 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~ 120 (163)
+.++++|..||.+.=-..+.+++.++|...+.--...+|+.++.
T Consensus 54 e~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 54 ENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 56888999999888778889999999986654445555555443
No 233
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=27.92 E-value=75 Score=20.27 Aligned_cols=34 Identities=29% Similarity=0.159 Sum_probs=19.0
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFR 123 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D 123 (163)
.+..++..|+...|...|..++..+|+..+....
T Consensus 10 ~~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g 43 (72)
T PF01498_consen 10 RNPRISAREIAQELQEAGISVSKSTIRRRLREAG 43 (72)
T ss_dssp ------HHHHHHHT---T--S-HHHHHHHHHHT-
T ss_pred HCCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcC
Confidence 4556999999999986699999999999887764
No 234
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=27.88 E-value=1.7e+02 Score=20.37 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 031234 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (163)
Q Consensus 112 ~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~ 144 (163)
.++.+-+|..+. |.+|.|+...|..++..+-
T Consensus 2 ~dKyRylFslis--d~~g~~~~~~l~~lL~d~l 32 (90)
T PF09069_consen 2 EDKYRYLFSLIS--DSNGCMDQRKLGLLLHDVL 32 (90)
T ss_dssp HHHHHHHHHHHS---TTS-B-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHH
Confidence 366778888886 5789999999998877653
No 235
>PRK00441 argR arginine repressor; Provisional
Probab=27.71 E-value=96 Score=23.50 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=33.2
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CCCCCc
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN---PHDSLR 130 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~---~d~dG~ 130 (163)
..+..+.+||.+.|...|..+++.+++.-+..+.. ++.+|.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~ 58 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGK 58 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCC
Confidence 56788999999999999999999999988887643 135564
No 236
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.45 E-value=39 Score=30.53 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 108 QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 108 ~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
.+|.-+.|+.|-+.+|. |.+|.|+.+|=-.+++
T Consensus 63 dklg~EAir~iHrqmDD-D~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDD-DHNGSIDVEESDEFLR 95 (575)
T ss_pred chhhHHHHHHHHHhccc-ccCCCcccccchHHHH
Confidence 56788899999999999 9999999988555554
No 237
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=27.42 E-value=1.2e+02 Score=19.49 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=15.7
Q ss_pred ceeHHHHHHHHHhcCC----CCCHHHHHHHH
Q 031234 93 FIDENELQQALSSGYQ----RFSLSTIRLLM 119 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~----~ls~~~v~~L~ 119 (163)
-|..+||...|+..|. .++...++.++
T Consensus 24 PI~L~el~~~L~~~g~~~~~~~~~~~l~~~l 54 (64)
T PF09494_consen 24 PINLEELHAWLKASGIGFDRKVDPSKLKEWL 54 (64)
T ss_pred CccHHHHHHHHHHcCCCccceeCHHHHHHHH
Confidence 4666666666665554 55555555544
No 238
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=27.42 E-value=1.7e+02 Score=18.59 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHhcCCCCCceeHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 83 FEMVDRDRSGFIDENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 83 F~~~D~d~sG~Is~~EL~~aL~~~g-~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
|+.+...-.|.++..|++.+..-+. ..++.+.|..++...-. . +..+ |.-+...|..|+.
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~-~--~~~~---~~Yi~~Il~~W~~ 62 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALE-N--NKRS---FNYIEKILNNWKQ 62 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-C--T--S---HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-c--CCCC---HHHHHHHHHHHHH
Confidence 4555555578888888887777443 47888888887776544 2 2233 3344455667765
No 239
>COG4086 Predicted secreted protein [Function unknown]
Probab=26.76 E-value=3e+02 Score=23.44 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=27.7
Q ss_pred eeHHHHHHHHH----hcCCCCCHHHHHHHHHHhcCCCCCCcccHHH
Q 031234 94 IDENELQQALS----SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKE 135 (163)
Q Consensus 94 Is~~EL~~aL~----~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eE 135 (163)
.+.+|++.+.. .++.++++..++.+...+-. -++.-|+|..
T Consensus 210 ~~~~dirkvv~dv~~~ynvnltd~qvn~i~~~~~~-~~~~n~d~~k 254 (299)
T COG4086 210 DDPADIRKVVDDVANNYNVNLTDTQVNQIVNLFLA-MSNLNIDWTK 254 (299)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hhccCccHHH
Confidence 46777777666 46778888888888777654 4444566554
No 240
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=26.64 E-value=1.7e+02 Score=18.32 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=7.9
Q ss_pred CceeHHHHHHHHHh
Q 031234 92 GFIDENELQQALSS 105 (163)
Q Consensus 92 G~Is~~EL~~aL~~ 105 (163)
..++.++|.+.+..
T Consensus 23 ~~vs~~~l~~~lw~ 36 (78)
T smart00862 23 RVVSREELLEAVWG 36 (78)
T ss_pred CccCHHHHHHHHcC
Confidence 35666666665553
No 241
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=26.49 E-value=2.3e+02 Score=19.80 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=35.6
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRV 148 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~ 148 (163)
++|.|+.++...+-. ..-..+.++.|+..+-. .|.-.|..|+.++.....+++
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~---RG~~AF~~F~~aL~e~~~l~~ 84 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILPS---RGPKAFHAFLDSLEEFPWVRD 84 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHHHHH
Confidence 466777777776653 34457788888877654 577888888887765433333
No 242
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=26.34 E-value=1.5e+02 Score=18.67 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=17.3
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCHHHHHHHH
Q 031234 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLM 119 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~ 119 (163)
+.+..|+.++|.+.+.......+...++..+
T Consensus 20 ~~~~~vs~~~l~~~~w~~~~~~~~~~l~~~I 50 (77)
T PF00486_consen 20 NPGRVVSREELIEALWGDEEDVSDNSLDVHI 50 (77)
T ss_dssp TTTSEEEHHHHHHHHTSSSSTTCTHHHHHHH
T ss_pred CCCCCCCHHHhCChhhhcccccchhhHHHHH
Confidence 4555678888877776443334444444333
No 243
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=26.24 E-value=93 Score=22.39 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 031234 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146 (163)
Q Consensus 109 ~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~ 146 (163)
+-+.++++.++...+ ..++=++...++..+.++
T Consensus 78 P~~~dElrai~~~~~-----~~~~~e~l~~ILd~l~k~ 110 (112)
T PRK14981 78 PETRDELRAIFAKER-----YTLSPEELDEILDIVKKY 110 (112)
T ss_pred CCCHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHh
Confidence 345566666665543 346767776666655444
No 244
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=26.17 E-value=2.2e+02 Score=19.91 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC--C--CCCCcccHHHHHHH
Q 031234 97 NELQQALSSGYQRFSLSTIRLLMFLFRN--P--HDSLRIGPKEFADL 139 (163)
Q Consensus 97 ~EL~~aL~~~g~~ls~~~v~~L~~~~D~--~--d~dG~I~~eEF~~l 139 (163)
..|+.+|+..|..++.+.+..++..++. | -..|.|+.+.+..+
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 4466666666777777766666665543 1 24567777664443
No 245
>PRK08181 transposase; Validated
Probab=25.87 E-value=2.2e+02 Score=23.62 Aligned_cols=47 Identities=15% Similarity=-0.027 Sum_probs=30.9
Q ss_pred CCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 91 sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
...|+.++|...|+.+...--.+.+..++... ..+.++++||+..+.
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a----~~~~~~~~e~L~~ll 50 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA----DKEGWPAARFLAAIA 50 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH----hhcCCCHHHHHHHHH
Confidence 45688889999998876543334444444332 335699999998664
No 246
>PRK03341 arginine repressor; Provisional
Probab=25.29 E-value=3.1e+02 Score=21.25 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=33.9
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CCCCCcc
Q 031234 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN---PHDSLRI 131 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~---~d~dG~I 131 (163)
...+..+-+||.+.|+..|..+++.++..-++.+.. ++.+|..
T Consensus 25 ~~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~~~Kv~~~~G~~ 70 (168)
T PRK03341 25 SRQSVRSQAELAALLADEGIEVTQATLSRDLDELGAVKLRGADGGL 70 (168)
T ss_pred HHCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhcCEeeecCCCCE
Confidence 466678899999999999999999999888877643 1455654
No 247
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=25.20 E-value=1.3e+02 Score=28.00 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHh-----cCCCCCceeHHHHHHHHHhc
Q 031234 74 GTHPDVIRSFEMV-----DRDRSGFIDENELQQALSSG 106 (163)
Q Consensus 74 ~~~~~l~~~F~~~-----D~d~sG~Is~~EL~~aL~~~ 106 (163)
+-++.++-...++ |.|.-|-|+..+|+.+|+-.
T Consensus 517 NVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a 554 (706)
T KOG2303|consen 517 NVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYA 554 (706)
T ss_pred ccchHhhhhhhhccccccccCCccCccHHHHHHHHHHH
Confidence 4456666655555 57788999999999999943
No 248
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=24.36 E-value=2.7e+02 Score=27.05 Aligned_cols=9 Identities=0% Similarity=0.176 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 031234 96 ENELQQALS 104 (163)
Q Consensus 96 ~~EL~~aL~ 104 (163)
.+++++.++
T Consensus 403 ~~~~ee~Fk 411 (830)
T KOG1923|consen 403 FSRFEEQFK 411 (830)
T ss_pred HHHHHHHHH
Confidence 333443333
No 249
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=24.21 E-value=1.1e+02 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=17.5
Q ss_pred ceeHHHHHHHHHhc--CCCCCHHHHHHHHHHhcC
Q 031234 93 FIDENELQQALSSG--YQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 93 ~Is~~EL~~aL~~~--g~~ls~~~v~~L~~~~D~ 124 (163)
.|+..+|..+|..+ +.-+..+++..||..+..
T Consensus 11 ~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkS 44 (196)
T KOG4064|consen 11 MISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKS 44 (196)
T ss_pred hhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhc
Confidence 35555565555532 334556666666666654
No 250
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.97 E-value=1.8e+02 Score=18.71 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~ 141 (163)
..|.|+.+|...+.... -..+.++.|+..+.. .|.=.|..|+..+.
T Consensus 24 ~~~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~---kg~~af~~F~~~L~ 69 (80)
T cd01671 24 SDGVLTEEEYEKIRSES---TRQDKARKLLDILPR---KGPKAFQSFLQALQ 69 (80)
T ss_pred HcCCCCHHHHHHHHcCC---ChHHHHHHHHHHHHh---cChHHHHHHHHHHH
Confidence 56788988888766532 267788888888875 35556666666544
No 251
>COG1158 Rho Transcription termination factor [Transcription]
Probab=23.20 E-value=1.2e+02 Score=26.87 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCc------eeHHHHHHHHH--h-cCCCCCHHHHHHHHHHhcC
Q 031234 80 IRSFEMVDRDRSGF------IDENELQQALS--S-GYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 80 ~~~F~~~D~d~sG~------Is~~EL~~aL~--~-~g~~ls~~~v~~L~~~~D~ 124 (163)
+++|-..|..++|. ++.+||+.++. . +..--+.+.++.|+..+..
T Consensus 354 rRifPAIdi~kSGTRKEeLLl~~~~l~k~w~lRr~l~~md~~~a~e~li~klk~ 407 (422)
T COG1158 354 RRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIEFLIDKLKK 407 (422)
T ss_pred cccccceecccCCcchHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Confidence 56777778888776 56666666554 2 2222234555556666655
No 252
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=23.14 E-value=96 Score=20.78 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
..++++...- ...|+|+.+|+..+|.. ..++.+.+..++..+..
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHH
Confidence 4556655543 36889999999999874 34788889888888765
No 253
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=23.02 E-value=13 Score=28.21 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=5.8
Q ss_pred eeHHHHHHHHH
Q 031234 94 IDENELQQALS 104 (163)
Q Consensus 94 Is~~EL~~aL~ 104 (163)
|+.+|+++|+.
T Consensus 10 vTldevr~Av~ 20 (140)
T PF13075_consen 10 VTLDEVRRAVH 20 (140)
T ss_pred ccHHHHHHHHH
Confidence 45555555555
No 254
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=22.60 E-value=2.1e+02 Score=25.87 Aligned_cols=48 Identities=17% Similarity=-0.049 Sum_probs=32.9
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHH
Q 031234 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFA 137 (163)
Q Consensus 89 d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~ 137 (163)
.....|-+.+|+++|.+.....+.-+.-.|-..+|. ..++.|+.-||-
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDL-tcnd~iS~FEFD 233 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDL-TCNDFISNFEFD 233 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceecc-ccccceeeehhh
Confidence 456678999999999976444444444455566787 677888766653
No 255
>PTZ00315 2'-phosphotransferase; Provisional
Probab=22.60 E-value=1.5e+02 Score=27.75 Aligned_cols=38 Identities=5% Similarity=0.053 Sum_probs=31.4
Q ss_pred cCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 87 D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
..|.+|.++.+||.+.++..+..++.+.++.++..=|+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 46789999999999999876778999999988865443
No 256
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=22.35 E-value=1.1e+02 Score=29.75 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=49.1
Q ss_pred HHHHHHHhcCC-CCCceeHHHHHHHHHh--------cC----CCCCHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHH-
Q 031234 79 VIRSFEMVDRD-RSGFIDENELQQALSS--------GY----QRFSLS-TIRLLMFLFRNPHDSLRIGPKEFADLWSCL- 143 (163)
Q Consensus 79 l~~~F~~~D~d-~sG~Is~~EL~~aL~~--------~g----~~ls~~-~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l- 143 (163)
+.++|..++-. +...++..++..+|.. .| .++..+ .++.++..||. ..+|.|..-+|.--+..+
T Consensus 422 ~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~-~R~g~irvls~ki~~i~lc 500 (966)
T KOG4286|consen 422 ALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDT-GRTGRIRVLSFKIGIISLC 500 (966)
T ss_pred HHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhccc-CCCcceEEeeehhhHHHHh
Confidence 45566666543 3445666666666652 12 122333 34667788998 899999999987644433
Q ss_pred -----HHHHHHhcchhcCCCC
Q 031234 144 -----GQWRVSILTDYSLNFQ 159 (163)
Q Consensus 144 -----~~~r~~iF~~~D~D~~ 159 (163)
++++. +|...-.+++
T Consensus 501 k~~leek~~y-lF~~vA~~~s 520 (966)
T KOG4286|consen 501 KAHLEDKYRY-LFKQVASSTS 520 (966)
T ss_pred cchhHHHHHH-HHHHHcCchh
Confidence 56777 8877665543
No 257
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=22.33 E-value=1.5e+02 Score=24.67 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh
Q 031234 73 PGTHPDVIRSFEMVD--RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRVSI 150 (163)
Q Consensus 73 p~~~~~l~~~F~~~D--~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r~~i 150 (163)
..+-..+.+++..+. ......++.+|.++.-.-+..-+.-..++.+..-+-. .+--..+..||+..+..| |.. .
T Consensus 60 ~pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~-k~~~~~~~~~Fk~~L~~i--WF~-~ 135 (265)
T PF09412_consen 60 KPTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVS-KGLAPSDEAEFKKQLKNI--WFG-L 135 (265)
T ss_dssp TSTHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHH-TTSS-SSHHHHHHHHHHH--HTS--
T ss_pred CCHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHh--CCc-c
Confidence 345556777777664 3345567777766654433333344444444433332 122457788888776655 555 4
Q ss_pred cch
Q 031234 151 LTD 153 (163)
Q Consensus 151 F~~ 153 (163)
|.+
T Consensus 136 Y~R 138 (265)
T PF09412_consen 136 YSR 138 (265)
T ss_dssp B-S
T ss_pred ccC
Confidence 444
No 258
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.26 E-value=2.5e+02 Score=19.34 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
.++.++.+|+.+.|+..+..++..++-..+..+
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L 45 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLELL 45 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 367899999999999877788888776666554
No 259
>KOG1908 consensus Ribonuclease inhibitor type leucine-rich repeat proteins [RNA processing and modification]
Probab=22.05 E-value=1.8e+02 Score=22.14 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.2
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcC
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGY 107 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g 107 (163)
-+|... .|....|+.+|+..+.+...
T Consensus 63 ~lfHa~-hdsqrvids~Eii~AYkeAC 88 (165)
T KOG1908|consen 63 PLFHAQ-HDSQRVIDSDEIIGAYKEAC 88 (165)
T ss_pred hhhhhh-ccccccccHHHHHHHHHHHH
Confidence 355544 36677899999988888543
No 260
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=21.68 E-value=1.2e+02 Score=26.62 Aligned_cols=45 Identities=4% Similarity=0.164 Sum_probs=34.5
Q ss_pred HHHHHHHHhcC-C--CCCCcccHHHHHHHHHHHHHHHHHhcchhcCCCC
Q 031234 114 TIRLLMFLFRN-P--HDSLRIGPKEFADLWSCLGQWRVSILTDYSLNFQ 159 (163)
Q Consensus 114 ~v~~L~~~~D~-~--d~dG~I~~eEF~~l~~~l~~~r~~iF~~~D~D~~ 159 (163)
.++.++..+.. + .++..++.++|..++-++.+|++ +=+++|.++.
T Consensus 361 ~~e~i~~~~gGRpHwgK~~~l~~~~l~~~YP~~~~F~~-~r~~~DP~g~ 408 (419)
T TIGR01679 361 AVEPIFRRYAGRPHWGKRHYLTAATLRERYPRWDDFAA-VRDDLDPDRR 408 (419)
T ss_pred HHHHHHHHcCCCCCchhccCCCHHHHHHHCcCHHHHHH-HHHHhCCCCc
Confidence 45566666642 1 36778999999999999999988 8889998863
No 261
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=21.65 E-value=1e+02 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=30.2
Q ss_pred hcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 031234 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (163)
Q Consensus 86 ~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~ 124 (163)
+..+.||++..++|.++-+.-+...+.+.++.++..-|+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 456789999999998877766777788888888766544
No 262
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=21.61 E-value=2.3e+02 Score=18.03 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHH
Q 031234 115 IRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145 (163)
Q Consensus 115 v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~ 145 (163)
+..++..+.. .-..-|..+|...+++.+-+
T Consensus 38 v~~~~~~~N~-~~~~PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 38 VLSLAQAINS-NFSPPLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHH
Confidence 4445544443 23445666666666655533
No 263
>PLN03138 Protein TOC75; Provisional
Probab=21.47 E-value=2.6e+02 Score=27.16 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=37.5
Q ss_pred ceeHHHHHHHHHhcC------------CCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH
Q 031234 93 FIDENELQQALSSGY------------QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWR 147 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g------------~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~r 147 (163)
.++..||+++|+..- ..|+.+.+++++..+.. .|+++.+++......|++|-
T Consensus 251 ~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~---~gklN~e~Lq~die~I~~~Y 314 (796)
T PLN03138 251 DMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRD---QGKVSARLLQRIRDRVQKWY 314 (796)
T ss_pred ccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhcc---CCcCCHHHHHHHHHHHHHHH
Confidence 455677777777422 34788888888877733 46699999998888887764
No 264
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.47 E-value=1.9e+02 Score=20.31 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCceeHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031234 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122 (163)
Q Consensus 91 sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~ 122 (163)
.+.++.+|+...|+..+..++..+|=..+..+
T Consensus 21 ~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 21 PEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 34899999999999888888888776655554
No 265
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=21.35 E-value=1.4e+02 Score=19.14 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.1
Q ss_pred ceeHHHHHHHHHhcCCCCCHHHHHHH
Q 031234 93 FIDENELQQALSSGYQRFSLSTIRLL 118 (163)
Q Consensus 93 ~Is~~EL~~aL~~~g~~ls~~~v~~L 118 (163)
.|+.++|..+|+.....++.+.++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888899998887777777776553
No 266
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.12 E-value=33 Score=23.66 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=26.8
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPK 134 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~e 134 (163)
.+|+-..-||-.+|+.+|..+-+..++-+++.+.. +.|.+.++
T Consensus 37 dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR--~tgF~E~~ 79 (88)
T PF15144_consen 37 DSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR--STGFMEFE 79 (88)
T ss_pred ccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc--ccCceecC
Confidence 34444455677777777766666677777777765 45555544
No 267
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.03 E-value=2.3e+02 Score=17.92 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=4.8
Q ss_pred ceeHHHHHHHHH
Q 031234 93 FIDENELQQALS 104 (163)
Q Consensus 93 ~Is~~EL~~aL~ 104 (163)
.++.+|...++.
T Consensus 14 ~Ls~~e~~~~~~ 25 (66)
T PF02885_consen 14 DLSREEAKAAFD 25 (66)
T ss_dssp ---HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 455555555555
No 268
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.00 E-value=2.3e+02 Score=19.01 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=34.9
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
..|.|+.+|...+.. ..-..+.+++|+..+.. .|...+.-|+..+...
T Consensus 26 ~~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~~---kG~~A~~~F~~~L~e~ 73 (82)
T cd08330 26 GKKVITQEQYSEVRA---EKTNQEKMRKLFSFVRS---WGASCKDIFYQILREE 73 (82)
T ss_pred HCCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHc---cCHHHHHHHHHHHHHh
Confidence 457788887777654 33567888998888764 5788888888876543
No 269
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=20.75 E-value=3.4e+02 Score=22.62 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCceeHHHHHHHHH-----hcCCCCCHHHHHHHHHHh-cCC--CCCCcccHHHHHH
Q 031234 91 SGFIDENELQQALS-----SGYQRFSLSTIRLLMFLF-RNP--HDSLRIGPKEFAD 138 (163)
Q Consensus 91 sG~Is~~EL~~aL~-----~~g~~ls~~~v~~L~~~~-D~~--d~dG~I~~eEF~~ 138 (163)
--.+.+.+|.++|+ ..+..|+.+.++-|-.++ ... ..+..|++.+|.+
T Consensus 176 p~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp -SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CCcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 44688999999999 368899999888776644 220 1467899999964
No 270
>PF05419 GUN4: GUN4-like ; InterPro: IPR008629 In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participate in plastid-to-nucleus signalling by regulating magnesium-protoporphyrin IX synthesis or trafficking.; PDB: 1Y6I_A 1Z3X_A 1Z3Y_A.
Probab=20.57 E-value=52 Score=24.54 Aligned_cols=54 Identities=19% Similarity=0.459 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 031234 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (163)
Q Consensus 81 ~~F~~~D~d~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l 143 (163)
-+.+..++.+.|.|+.++++ .++.+.++.|=++.-. ..+|+..|.-=..+|..+
T Consensus 20 lml~~ag~~~~~~l~~~~i~--------~~pc~dL~~ID~LW~~-yS~GrFGFSVQk~I~~~~ 73 (132)
T PF05419_consen 20 LMLKIAGREKRGWLDPEDIK--------NFPCEDLRTIDQLWVK-YSNGRFGFSVQKQIWQSL 73 (132)
T ss_dssp HHHHHH-CCCHTS--HHHHC--------TS-HHHHHHHHHHHHH-TTTT-SSHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCcCCHHHHH--------hCCHHHHHHHHHHHHH-hCCCCcChHHHHHHHHHc
Confidence 34445555556666666554 3444444443333333 445666665444455443
No 271
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=20.54 E-value=1.1e+02 Score=21.59 Aligned_cols=46 Identities=11% Similarity=0.277 Sum_probs=22.1
Q ss_pred eeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Q 031234 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146 (163)
Q Consensus 94 Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~l~~~ 146 (163)
|+..|..+++.. .+-+.++++.|+... +.+++-++...++..+.++
T Consensus 71 L~~~E~~qi~Nl--~P~~~~El~~ii~~~-----~~r~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 71 LTEFEILQIINL--RPTTAVELRAIIESL-----ESRFSEEDLEEILDLVSKY 116 (117)
T ss_dssp S-HHHHHHHHHH----SSHHHHHHHSTTG-----TTTSTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcC--CCCCHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHh
Confidence 444444444443 123444555554333 3357767766666655543
No 272
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=20.37 E-value=1.7e+02 Score=22.09 Aligned_cols=33 Identities=24% Similarity=0.119 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHhcCCCCCceeHHHHHHHHHhc
Q 031234 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (163)
Q Consensus 74 ~~~~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~ 106 (163)
-+..++.-+|..+-..+..+|+.++|+++|..+
T Consensus 38 ~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 38 LTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 456678888998755566679999999999854
No 273
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=20.14 E-value=2.1e+02 Score=18.59 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=32.7
Q ss_pred CCCceeHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 031234 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (163)
Q Consensus 90 ~sG~Is~~EL~~aL~~~g~~ls~~~v~~L~~~~D~~d~dG~I~~eEF~~l~~~ 142 (163)
..|.|+.+|...+.. ..-..+.++.|+..+.. .|.-.|..|+.++..
T Consensus 27 ~~~vlt~~e~e~I~~---~~t~~~k~~~LLd~l~~---kg~~a~~~F~~~L~~ 73 (85)
T PF00619_consen 27 SRGVLTEEEYEEIRS---EPTRQDKARKLLDILKR---KGPEAFDIFCQALRE 73 (85)
T ss_dssp HTTSSSHHHHHHHHT---SSSHHHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHH---HCHHHHHHHHHHHHh
Confidence 467888888887765 34456778888888764 355667777766554
No 274
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=20.14 E-value=2.2e+02 Score=21.05 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 031234 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMF 120 (163)
Q Consensus 77 ~~l~~~F~~~D~d~sG~Is~~EL~~aL~~~-g~~ls~~~v~~L~~ 120 (163)
..|.++|++|. ++.|+.+.+..++... |..++...+.=|..
T Consensus 37 ~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~ 78 (122)
T PF06648_consen 37 DKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYN 78 (122)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHH
Confidence 34555555553 2356666666666533 34555554443333
Done!