BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031235
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L+ A +G+ V+DL+ G DVN+ D DGRT LH AA EGH E+VKLL+SK A+++A+
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGH 162
D G T A G+ E+ +L ++GA V + H+ GH
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L + A G + V+ L+++G DVN+ D DGRT LH AA EGH E+VKLL+SK A+
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A+D G T A G+ E+ +L ++GA V
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L + A G + V+ L+++G DVN+ D DGRT LH AA EGH E+VKLL+SK A+
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
++ D G T A+ +GN E+ +L+ +G
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 58/90 (64%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L+ A +G+ V+DL+ G DVN+ D DGRT LH AA GH EVVKLL+SK A+++A+
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D G T A G+ EV +L ++GA V
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADV 96
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G + V+ L+++G DVN+ D DGRT LH AA GH EVVKLL+SK A+
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A+D G T A G+ EV +L ++GA V
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G + V+ L+++G DVN+ D DGRT LH AA GH EVVKLL+SK A+
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
++ D G T A+ +GN EV +L+ +G
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G + V+ LL++G DVN+ DG T LH+AA GH E+VKLLL+K A+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++AR + G+T AK G+ E+ +L A+GA V
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G + V+ LL +G DVN+ DG T H+A GH E+VKLL +K A+
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 112 IDARDRWGST 121
++AR WGS+
Sbjct: 101 VNARS-WGSS 109
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ID+ G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
WG T A G++E+ +L GA V
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Query: 31 SSLDPIRRSPVQDELTVPE------------NLDSTMQLLFMACSGDVKGVEDLLNEGID 78
S L P+ + L + E ++ + L A G ++ VE LL G D
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 79 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
VN++D G T LH+AA GH+E+V++LL A+++A+D++G TA + GN ++ IL
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 139 K 139
+
Sbjct: 166 Q 166
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+++A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D GST A G++E+ +L GA V
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ID+ G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
WG T A G++E+ +L GA V
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN++D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+++A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D GST A G++E+ +L GA V
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L+ A +G+ V+DLL G DVN+ D DG+T LH+AA GH EVVKLLLS+ A+ +A+
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
D G T A G+ EV +L ++GA PN
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PN 97
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G + V+ LL++G D N+ D DG+T LH+AA GH EVVKLLLS+ A+
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
+ D G T A+ +GN EV +L+ +G
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G + V+ LL++G D N+ D DG+T LH+AA GH EVVKLLLS+ A+
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
+A+D G T A G+ EV +L ++GA PN
Sbjct: 96 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PN 130
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN++D +G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A Y+G++E+ +L GA V
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
+ T L A G ++ VE LL G DVN+ D G T L++AA GH+E+V++LL A+
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G TA + GN ++ IL+
Sbjct: 127 VNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G D N+ D GRT LH+AA GH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A D G+T A G++E+ +L GA V
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L+ A +G+ V+DLL G D N+ D DGRT LH AA GH E+VKLLLSK A+ +A+
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
D G T A G+ E+ +L ++GA PN
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PN 97
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L + A +G + V+ LL++G D N+ D DGRT LH AA GH E+VKLLLSK A+
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
+ D G T A+ +GN E+ +L+ +G
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L + A +G + V+ LL++G D N+ D DGRT LH AA GH E+VKLLLSK A+
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
+A+D G T A G+ E+ +L ++GA PN
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PN 130
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G ++ VE LL G DVN+ DL G T LH+AA GH+E+V++LL A+
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A D G T A YG++E+ +L GA V
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
+L L A +G ++ VE LL G DVN+ D DG T LH+AA GH+E+V++LL
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILK 139
A+++A+D++G TA + GN ++ IL+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D DG T LH+AA GH+E+V++LL A+++A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVP--NGILHIFFHFRKPRGHL 163
D G T A G++E+ +L GA V + H H GHL
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D+ G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPRGHL 163
++A D GST A ++G++E+ +L GA V NGI + H RGHL
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL--HLAANRGHL 126
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A G++E+ +L GA V
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADV 139
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D +G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISINNGNEDLAEILQ 166
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D G+T LH+AA +GH+E+V++LL A+++A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF--FHFRKPRGHL 163
D+ G T A YG++E+ +L GA V + F H GHL
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHL 126
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
+G T A G++E+ +L GA V
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ V+ LL G DVN+ D +GRT LH+AA GH+EVVKLLL A+++A+D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
+ G T A G++EV +L GA V
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADV 94
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ V+ LL G DVN+ D +GRT LH+AA GH+EVVKLLL A+++A+D
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
+ G T A G++EV +L GA
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 85 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
+GRT LH+AA GH+EVVKLLL A+++A+D+ G T A G++EV +L GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 145 V 145
V
Sbjct: 61 V 61
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A+D+ G T A G++E+ +L GA V
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPRGHL 163
++A+D+ G T A G++E+ +L GA V +G + H GHL
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHL 114
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 112 IDARDRWGST 121
++A+D++G T
Sbjct: 127 VNAQDKFGKT 136
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ V+ LL G DVN+ D +GRT LH+AA GH+EVVKLLL A+++A+D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
+ G T A G++EV +L GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 85 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
+GRT LH+AA GH+EVVKLLL A+++A+D+ G T A G++EV +L GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 145 V 145
V
Sbjct: 61 V 61
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A+D+ G T A G++E+ +L GA V
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G T A GN ++ +L+
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPRGHL 163
++A+D+ G T A G++E+ +L GA V +G + H GHL
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHL 114
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A++DA
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D +G T A Y+G++E+ +L GA V
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
T L A SG ++ VE LL G DV++ D+ G T LH+AA GH+E+V++LL A++
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 113 DARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
+A D G T A +G +E+ +L GA V
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN++D DG T LH+AA G++E+V++LL A+++A+D
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
D L A G ++ VE LL G DVN+ D G+TA I+ G+ ++ ++L
Sbjct: 112 DGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A+D+ G T A G++E+ +L GA V
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G TA + GN ++ IL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPRGHL 163
++A+D+ G T A G++E+ +L GA V +G + H GHL
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG--YTPLHLAAREGHL 126
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF--FHFRKPRGHL 163
++A+D G T A G++E+ +L GA V H F H RGHL
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL 126
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A G++E+ +L GA V
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ VE LL G DVN+ D G T LH+AA +GH+E+V++LL A+++A D
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
R G T A G +E+ +L GA V
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D +G T LH+AA G +E+V++LL A+++A
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D G T A Y G++E+ +L GA V
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA G +E+V++LL A+++A+D
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Query: 117 RWGSTA 122
G TA
Sbjct: 136 ALGLTA 141
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ VE LL G DVN+ D+ G T LH+AA EGH+E+V++LL A+++A+D
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 117 RWGSTA 122
++G TA
Sbjct: 144 KFGKTA 149
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A SG ++ VE LL G DV++ D+ G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
GST A G++E+ +L GA V
Sbjct: 111 MTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN++D G T LH+AA GH+E+V++LL A++DA
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D +G T A G++E+ +L GA V
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK 103
++ + L A G ++ VE LL G DVN+ D G+TA I+ G+ ++ K
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN++D G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
GST A G++E+ +L GA V
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+++A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGHL 163
D GST A G++E+ +L GA V + I H GHL
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 50 NLDSTMQ---LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
N D T+ L A +G ++ VE LL G DVN+ D G+TA I+ G+ ++ ++L
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL +G V L+ G DVN++D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++ARD WG T A G++E+ +L GA V
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D+ GRT LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G + VE LL G DVN+ D DG T LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
+G T A G++E+ +L GA V
Sbjct: 111 AYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A +G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G TA + GN ++ IL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+AA GH E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF--FHFRKPRGHL 163
++ARD G T A G++E+ +L GA V + H RGHL
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHL 126
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A Y G++E+ +L GA V
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ VE LL G DVN+ D +G T LH+AA +GH+E+V++LL A+++A+D
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF--FHFRKPRGHL 163
++A D +G+T A G++E+ +L GA V F H GHL
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHL 126
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN++D DG T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A D +G T A G++E+ +L GA V
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D L A G ++ VE LL G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G TA + GN ++ IL+
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQ 133
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D++G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G ++ VE LL G DVN++D G T L +AA GH+E+V++LL A+++A D
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A +G++E+ +L GA V
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGIL--HIFFHFRKPRGHL 163
++A D G T A +G++E+ +L GA V + H H GHL
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 30 QSSLDPIRRSPVQDELTVPE------------NLDSTMQLLFMACSGDVKGVEDLLNEGI 77
+ + P+R + + L + E +++ L A G ++ VE LL G
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 78 DVNSIDLDGRTALHIAACEGHVEVVKLL 105
DVN+ D G+TA I+ G+ ++ ++L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D+ GRT LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL +G V L+ G DVN++D G T LH+AA GH+E+V++LL A+++A
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D WG T A G++E+ +L GA V
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL +G V L+ G DVN++D G T LH+AA GH+E+V++LL A+++A
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D WG T A G++E+ +L GA V
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D GRT LH+AA GH+E+V++LL A+++A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN++D G T LH+AA +GH+E+V++LL A+++A+D
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+ GH+E++++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF--FHFRKPRGHL 163
++A D+ G T A Y G++E+ +L GA V + H GHL
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHL 126
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L + +G ++ +E LL DVN+ D G T LH+AA GH+E+V++LL A+++A D
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A G++E+ +L GA V
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D DG T LH+AA EGH+E+V++LL A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G TA + GN ++ IL+
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEILQ 88
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
VE LL G DVN+ D DG T LH+AA GH+E+V++LL A+++A+D++G TA +
Sbjct: 63 VEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Query: 129 YGNVEVYNILK 139
GN ++ IL+
Sbjct: 123 NGNEDLAEILQ 133
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+AA H+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A D GST A +G++E+ +L GA V
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
D + L A G ++ VE LL G DVN+ D G+TA I+ G+ ++ ++L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
VE LL G DVN+ID G T LH+ A GH+E+V++LL A+++A+D++G TA +
Sbjct: 63 VEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Query: 129 YGNVEVYNILK 139
GN ++ IL+
Sbjct: 123 NGNEDLAEILQ 133
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+LL A +G V L+ G DVN+ D G T LH+AA H+E+V++LL A+++A
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
D G T YG++E+ +L GA V
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 32 SLDPIRRSPVQDELTVPENL----------DSTMQ--LLFMACSGDVKGVEDLLNEGIDV 79
L P+ + + D L + E L D+ + L +A G ++ VE LL G DV
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 80 NSIDLDGRTALHIAACEGHVEVVKLL 105
N+ D G+TA I+ G+ ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L++A + G ++ VE LL G DVN++D G T LH+AA GH+E+ ++LL A+++A+D
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQ 133
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T L++A GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A D G T A + G++E+ +L GA V
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D G T LH+AA GH+EVV++LL A+++A D
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A G++E+ +L GA V
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ D +G T LH+AA GH+E+V++LL A+++A+D
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQD 143
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQ 166
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIFF---HFRKPRGHL 163
++A D G T A G++EV +L GA V N H F H GHL
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHL 126
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DV + D +G T LH+AA GH+EVVKLLL A+
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
++A+D++G TA + GN ++ IL+
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 93 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
AA G + V++L++ A++ A+D+ GST A G++EV +L GA V
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L+ G DV + D +G T LH+AA GH+EVVKLLL A+
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
+ A+D++G TA + GN ++ IL+
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 93 AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
AA G + V++L++ A++ A+D+ GST A G++EV +L GA V
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G ++ VE LL G DVN+ GRT LH+AA H+E+V++LL A+++A+D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++G TA + GN ++ IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D +LL A +G V L G DVN+ D G T LH+AA GH+E+V++LL A+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
++A G T A + ++E+ +L GA V
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 10 MSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGV 69
M + R ++ G ++ L+P PV D L SGD + V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEP----PVVKRKKTKVKFDDGAVFLAACSSGDTEEV 56
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
LL G D+N ++DG TALH A + +V++VK L+ ANI+ D G A
Sbjct: 57 LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116
Query: 130 GNVEVYNILKARGAKV 145
G +++ L ++GA V
Sbjct: 117 GYLDIAEYLISQGAHV 132
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
G TALH+AA +G+ EV+KLL+ + +++ +D G T A ++G E IL
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 50 NLDSTMQLLFMACSGD-VKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
N+D + L AC D V V+ L+ G ++N D +G LH AA G++++ + L+S+
Sbjct: 70 NVDG-LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 109 KANIDARDRWGST 121
A++ A + G T
Sbjct: 129 GAHVGAVNSEGDT 141
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G + ++ L+ DVN D DG T LH AA G E ++L+ +++A +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262
Query: 117 RWGSTA--AADAKYYGNVE 133
+ G TA AD G +E
Sbjct: 263 KVGQTAFDVADEDILGYLE 281
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
A +G + ++ LL DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G
Sbjct: 78 ARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
TA A+ YG EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L A GD++ + LL ++VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGHL 163
DR G DA G ++ L A V + ++ H GHL
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
A +G + ++ LL DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G
Sbjct: 78 ARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
TA A+ YG EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L A GD++ + LL ++VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGHL 163
DR G DA G ++ L A V + ++ H GHL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L + GD+ VE LL G D N D G T LH A GH++VV+LLL KA ++
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
+ DA G+V++ +L + GA
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L AC+ G +K VE LL VN+ + LH AA GHV++VKLLLS A+ +A +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 117 RWG 119
+G
Sbjct: 107 IFG 109
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T LHIA+ +G + V+ LL ++ + +D G T +A +G+++V +L A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+ ++ +GD+ V+D + +G DVN GR LH AA G +E+++ LL K A+I+A
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGA----KVPNGI 149
D+ T A Y G+V +L ++GA K P+G+
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 41 VQDELTVPENLDSTMQ-----LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAAC 95
V+D + E+++ T++ L + A G ++ +E LL +G D+N+ D T L A
Sbjct: 23 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82
Query: 96 EGHVEVVKLLLSKKANIDARDRWGSTA 122
EGHV VKLLLSK A+ + G TA
Sbjct: 83 EGHVSCVKLLLSKGADKTVKGPDGLTA 109
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+ ++ +GD+ V+D + +G DVN GR LH AA G +E+++ LL K A+I+A
Sbjct: 5 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGA----KVPNGI 149
D+ T A Y G+V +L ++GA K P+G+
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 102
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 41 VQDELTVPENLDSTMQ-----LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAAC 95
V+D + E+++ T++ L + A G ++ +E LL +G D+N+ D T L A
Sbjct: 18 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 77
Query: 96 EGHVEVVKLLLSKKANIDARDRWGSTA 122
EGHV VKLLLSK A+ + G TA
Sbjct: 78 EGHVSCVKLLLSKGADKTVKGPDGLTA 104
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
A +G + ++ LL DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G
Sbjct: 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
TA A+ YG EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L A GD++ + LL ++VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGHL 163
DR G DA G ++ L A V + ++ H GHL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
A +G + ++ LL DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G
Sbjct: 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
TA A+ YG EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L A GD++ + LL ++VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGHL 163
DR G DA G ++ L A V + ++ H GHL
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
A +G + ++ LL DVN D +G LH+AA EGH+ VV+ L+ A N+ R+ G
Sbjct: 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
TA A+ YG EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
+L A GD++ + LL ++VN+ + GRTAL + G+ E+ + LL + AN D +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV--PNGILHIFFHFRKPRGHL 163
DR G+ DA G ++ L A V + ++ H GHL
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 66 VKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 125
V+ V+ LL G DV++ D G LH A GH EV +LLL A ++A D W T +
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 126 AKYYGNVEVYNILKARGA 143
A VEV ++L + GA
Sbjct: 131 AASKNRVEVCSLLLSHGA 148
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLSKKANID 113
+LL A SG+ + + LL ++VN DGR T LH+AA V +V+LLL A++
Sbjct: 27 ELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
A+D+ G +A YG+ EV +L GA V
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
E LL +G +VN + D T LH+AA H +V+++L A ++A D G TA A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 129 YGNVEVYNILKARGA 143
G+++ +L + G+
Sbjct: 290 AGHLQTCRLLLSYGS 304
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
+E L G +N++D G+TALH AA GH++ +LLLS ++ G TAA
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA----Q 318
Query: 129 YGNVEVYNIL 138
GN V IL
Sbjct: 319 MGNEAVQQIL 328
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L ACS G + E LL G VN++DL T LH AA + VEV LLLS A+ +
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 117 RWGSTAAADA-----------KYYGNVEVYNILKARGAKVPNGILHIFFHFRKPRGH 162
G +A A ++ G+ + +A AKV + +F++P+ H
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 87 RTALHIAACEGHV---EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
TALH A H +V +LLL K AN++ +++ T A + +V +L GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 144 KV 145
K+
Sbjct: 272 KM 273
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
LL G +VN +L+G T L +A+ G E+VK LL A+I ARD G TA A A+ +G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 132 VEVYNIL 138
EV I
Sbjct: 180 QEVIKIF 186
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
++++ + L++ + + E LL++G +VN+ D G+T L + G+ E+ LL
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 146
AN++ R+ G T A YG E+ L GA +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 41 VQDELTVPENLDSTMQL--------LFMACSGDVKGVEDLLNEGID-VNSIDLDGRTALH 91
++DE ++ +NLD L +AC ++ D L E D + D++G TAL
Sbjct: 14 IKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALI 73
Query: 92 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
A + + + LLSK +N++ +D G T + +G E+ L GA V
Sbjct: 74 WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
NL+ L+ + G + V+ LL G D+++ DL G TA A G EV+K+
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A V+ LL G N+ + G T LH+AA EGH E+V LLLSK+AN + +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
+ G T G+V V ++L G V
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%)
Query: 49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
E++ L A G + V LL++ + N + G T LH+ A EGHV V +L+
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
+DA R G T A +YGN+++ L A V
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 26 SFGRQSSLDPIRRSPVQDELTVPENL-------DSTMQLLFMACS-----GDVKGVEDLL 73
+ G +S L P+ + + V + L D+T ++ + G++K V+ LL
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 74 NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE 133
DVN+ G + LH AA +GH ++V LLL A+ + G+T A AK G +
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
Query: 134 VYNILK 139
V ++LK
Sbjct: 392 VTDVLK 397
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 64 GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 123
G V+ LL + N G T LHIAA EGHVE V LL K+A+ + G T
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150
Query: 124 ADAKYYGNVEVYNILKARGAKVPNGI-------LHIFFH 155
A YG V V +L R A PN LH+ H
Sbjct: 151 HVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVH 188
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 64 GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 123
G + V++LL G N ++ T LH+AA GH EV K LL KA ++A+ + T
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 124 ADAKYYGNVEVYNILKARGAKVPNGIL---HIFFHFRKPRGHL 163
A G+ + +L A PN H H GH+
Sbjct: 85 HCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHV 126
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G V+ V LL + + G T LH+AA G V V +LLL + A+ +A
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 117 RWGSTAAADAKYYGNVEVYNILKARG 142
+ G T A ++ N+++ +L RG
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRG 202
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
N+ L A +G + + LL VN+ D +T LH AA GH +VKLLL
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103
Query: 110 ANIDARDRWGSTAAADAKYYGNVE 133
AN + G T A G+VE
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVE 127
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
V+ LL G +S +G T LHIAA + VEV + LL + +A G T A
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Query: 129 YGNVEVYNILKARGA 143
G+ E+ +L ++ A
Sbjct: 255 EGHAEMVALLLSKQA 269
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G V+ E LL N+ +G T LH+A ++++VKLLL + + +
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 117 RWGSTAAADAKYYGNVEV 134
G T A VEV
Sbjct: 210 WNGYTPLHIAAKQNQVEV 227
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 88 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
T LH+A+ GH+ +VK LL + A+ + + T A G+ EV L AKV
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 107
N ++ QLL A +GDV+ V+ L VN D++GR T LH AA V VV+ LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
A++ A+D+ G +A YG+ EV +L GA V
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L F A V VE LL G DV++ D G LH A GH EV +LL+ A ++ D
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
W T +A G E+ +L GA
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGA 132
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 22 NMRFSFGRQSSLDPIRRSPVQDELTVPENL-----------DSTMQLLFMACS-GDVKGV 69
N R GRQS+ P+ + + ++V E L + L ACS G +
Sbjct: 34 NCRDIEGRQST--PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
E L+ G VN DL T LH AA +G E+ KLLL A+ ++R G+T D
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD 150
Query: 130 GNVEVYNILKARGA 143
G+ ++ ++L+ A
Sbjct: 151 GDTDIQDLLRGDAA 164
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 107
N ++ QLL A +GDV+ V+ L VN D++GR T LH AA V VV+ LL
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
A++ A+D+ G +A YG+ EV +L GA V
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L F A V VE LL G DV++ D G LH A GH EV +LL+ A ++ D
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
W T +A G E+ +L GA
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGA 134
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 22 NMRFSFGRQSSLDPIRRSPVQDELTVPENL-----------DSTMQLLFMACS-GDVKGV 69
N R GRQS+ P+ + + ++V E L + L ACS G +
Sbjct: 36 NCRDIEGRQST--PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
E L+ G VN DL T LH AA +G E+ KLLL A+ ++R G+T D
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD 152
Query: 130 GNVEVYNILKARGA 143
G+ ++ ++L+ A
Sbjct: 153 GDTDIQDLLRGDAA 166
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 107
N ++ QLL A +GDV+ V+ L VN D++GR T LH AA V VV+ LL
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
A++ A+D+ G +A YG+ EV +L GA V
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 105
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L F A V VE LL G DV++ D G LH A GH EV +LL+ A ++ D
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
W T +A G E+ +L GA
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGA 136
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 22 NMRFSFGRQSSLDPIRRSPVQDELTVPENL-----------DSTMQLLFMACS-GDVKGV 69
N R GRQS+ P+ + + ++V E L + L ACS G +
Sbjct: 38 NCRDIEGRQST--PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
E L+ G VN DL T LH AA +G E+ KLLL A+ ++R G+T D
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT-PLDLVKD 154
Query: 130 GNVEVYNILKARGA 143
G+ ++ ++L+ A
Sbjct: 155 GDTDIQDLLRGDAA 168
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
N M + L+ ++ S + D+ L + DS L + +G + VE LL G+ V
Sbjct: 8 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 67
Query: 80 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
N D G + LHIAA G E+VK LL K A ++A ++ G T
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G + V+ LL +G VN+++ +G T LH AA + E+ +LL AN DA+D
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
+ +TA A GN+++ +IL
Sbjct: 138 HYEATAMHRAAAKGNLKMIHIL 159
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 49 ENLDSTMQLLFMACSGDVKGV-EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
E S + + +A SG ++ + E +L + D D RTALH A GH E+V+ LL
Sbjct: 3 EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPR 160
++ +D G + A G E+ L +GA+V NG + + K R
Sbjct: 63 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 119
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
A G++K + LL N D +G T LH+A E VE KLL+S+ A+I
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
LL G + ++ D TA+H AA +G+++++ +LL KA+ + +D G+T A
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 132 VEVYNILKARGAKV 145
VE +L ++GA +
Sbjct: 186 VEEAKLLVSQGASI 199
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
N M + L+ ++ S + D+ L + DS L + +G + VE LL G+ V
Sbjct: 7 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 80 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
N D G + LHIAA G E+VK LL K A ++A ++ G T
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 108
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G + V+ LL +G VN+++ +G T LH AA + E+ +LL AN DA+D
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
+ +TA A GN+++ +IL
Sbjct: 137 HYEATAMHRAAAKGNLKMIHIL 158
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 49 ENLDSTMQLLFMACSGDVKGV-EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
E S + + +A SG ++ + E +L + D D RTALH A GH E+V+ LL
Sbjct: 2 EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPR 160
++ +D G + A G E+ L +GA+V NG + + K R
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 118
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
A G++K + LL N D +G T LH+A E VE KLL+S+ A+I
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
LL G + ++ D TA+H AA +G+++++ +LL KA+ + +D G+T A
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 132 VEVYNILKARGAKV 145
VE +L ++GA +
Sbjct: 185 VEEAKLLVSQGASI 198
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 58 LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
L A +G VK ++ L++G DVN D G TA AA G V+ +K L + AN++ R +
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 118 W----------GSTAAADAKYYGNVEVYNIL 138
G+TA DA G+VEV IL
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKIL 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
VE LL G D +G T +AA G V+++KL LSK A+++ D +G TA +A
Sbjct: 55 VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Query: 129 YGNVEVYNILKARGAKV 145
YG V+ L RGA V
Sbjct: 115 YGKVKALKFLYKRGANV 131
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 59 FM--ACSGDVKGVEDLLNEGIDVN----------SIDLDGRTALHIAACEGHVEVVKLLL 106
FM A G VK ++ L G +VN + G TAL AA +GHVEV+K+LL
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Query: 107 SK-KANIDARDRWGSTA 122
+ A+++A D G A
Sbjct: 169 DEMGADVNACDNMGRNA 185
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 65 DVKGVEDLLNEGIDVNSIDLDGR-TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 123
DV V+ LL G +VN + +G T LH A ++V+LLL A+ R + G+T
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 124 ADAKYYGNVEVYNILKARGAKVPNGILHIFFHF 156
A G+V++ + ++GA V + F F
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 109
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYG 130
LL+ G DVN G+T L +A + H+ +V+ LL ++ I+ D G TA A
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264
Query: 131 NVEVYNILKARGAKVPNGIL 150
++ +L RGA G L
Sbjct: 265 LKKIAELLCKRGASTDCGDL 284
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
+ A +G VK ++ L++G DVN D G TA AA G V+ +K L + AN++ R
Sbjct: 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 117 RW----------GSTAAADAKYYGNVEVYNIL 138
+ G+TA DA G+VEV IL
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKIL 187
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
VE LL G D +G T +AA G V+++KL LSK A+++ D +G TA +A
Sbjct: 75 VELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134
Query: 129 YGNVEVYNILKARGAKV 145
YG V+ L RGA V
Sbjct: 135 YGKVKALKFLYKRGANV 151
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 65 DVKGVEDLLNEGIDVNSIDLDGR-TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 123
DV V+ LL G +VN + +G T LH A ++V+LLL A+ R + G+T
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 124 ADAKYYGNVEVYNILKARGAKVPNGILHIFFHF 156
A G+V++ + ++GA V + F F
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 129
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 59 FM--ACSGDVKGVEDLLNEGIDVN----------SIDLDGRTALHIAACEGHVEVVKLLL 106
FM A G VK ++ L G +VN + G TAL AA +GHVEV+K+LL
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188
Query: 107 SK-KANIDARDRWGSTA 122
+ A+++A D G A
Sbjct: 189 DEMGADVNACDNMGRNA 205
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK- 109
++ + L + DV+ + LL + G DVN G+T L +A + H+ +V+ LL ++
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263
Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGIL 150
I+ D G TA A ++ +L RGA G L
Sbjct: 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 304
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
N M + LD ++ + D+ L + DS L + +G + VE LL G+ V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 80 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
N D G + LHIAA G E+VK LL K A+++A ++ G T
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCT 108
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G + V+ LL +G VN+++ +G T LH AA + E+ +LL AN DA+D
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
+ +TA A GN+++ +IL
Sbjct: 137 HYDATAMHRAAAKGNLKMVHIL 158
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 59 FMACSGDVKGVEDLLNEGIDVNS-----IDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
M C+ G D L E I + D D RTALH A GH E+V+ LL ++
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPR 160
+D G + A G E+ L +GA V NG + + K R
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
LL G + ++ D TA+H AA +G++++V +LL KA+ + +D G+T A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 132 VEVYNILKARGAKV 145
VE L +GA +
Sbjct: 185 VEEAKFLVTQGASI 198
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
A G++K V LL N D +G T LH+A E VE K L+++ A+I
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
N M + LD ++ + D+ L + DS L + +G + VE LL G+ V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 80 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
N D G + LHIAA G E+VK LL K A+++A ++ G T
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT 108
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A +G + V+ LL +G VN+++ +G T LH AA + E+ +LL AN DA+D
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
+ +TA A GN+++ +IL
Sbjct: 137 HYDATAMHRAAAKGNLKMVHIL 158
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 59 FMACSGDVKGVEDLLNEGIDVNS-----IDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
M C+ G D L E I + D D RTALH A GH E+V+ LL ++
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PNGILHIFFHFRKPR 160
+D G + A G E+ L +GA V NG + + K R
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
LL G + ++ D TA+H AA +G++++V +LL KA+ + +D G+T A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 132 VEVYNILKARGAKV 145
VE L +GA +
Sbjct: 185 VEEAKFLVTQGASI 198
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
A G++K V LL N D +G T LH+A E VE K L+++ A+I
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
LL + G+ V+ ++ E D + + +G TALH A C GH E+VK L+ N++A D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A NV+V L GA V
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 62 CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
C+G + V+ L+ G++VN+ D DG T LH AA +V+V K L+ A + A
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Query: 122 AAAD 125
AAD
Sbjct: 139 TAAD 142
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
LL + G+ V+ ++ E D + + +G TALH A C GH E+VK L+ N++A D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A NV+V L GA V
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 62 CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
C+G + V+ L+ G++VN+ D DG T LH AA +V+V K L+ A + A
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Query: 122 AAAD 125
AAD
Sbjct: 139 TAAD 142
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KA 110
D L+ A + ++ V+ L+ G V+ D +G T LH+AA +GH EVV+ LLS +
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
Query: 111 NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
+++ +D G T A Y +V++ +L ++G+ +
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 45 LTVPENLDSTMQLLFMACSGDVKGVEDLLNEG-IDVNSIDLDGRTALHIAACEGHVEVVK 103
L P++ + + L A G + V+ LL+ G +DVN D G T + A HV++VK
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 140
LLLSK ++I+ RD + A + G V++ IL A
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 63 SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
+G V L+ G ++++ D RT L AA H+E VK L+ A +D +D GST
Sbjct: 21 AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80
Query: 123 AADAKYYGNVEVYNILKARG 142
A G+ EV L + G
Sbjct: 81 LHLAAKKGHYEVVQYLLSNG 100
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
+ + L + A SG V E LL D++++++ G + LHIAA E + V L LS+ ++
Sbjct: 143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
+ +++ G T A N +V++ L+ A
Sbjct: 203 VTLKNKEGETPLQCASL--NSQVWSALQMSKA 232
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 87 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV- 145
R+ LH AA GHV++ +L+ ANID T +A ++E L GA V
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 146 -PNGILHIFFHFRKPRGH 162
+ H +GH
Sbjct: 72 PKDAEGSTCLHLAAKKGH 89
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
V+ LL++G D+N D + LH AA G V++ ++LL+ K ++ A
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 54 TMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
T L A G E LL G+ ++ RT LH+AA EGH +V++LL A+++
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
A+D TA A + + EV +L GA V
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L MA S G VE LL G DVN+ D+ TALH A H EVV+LL+ A++ +
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
++ TA + GN ++ IL+
Sbjct: 131 KFCKTAFDISIDNGNEDLAEILQ 153
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 81 SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 140
+ D G + LH+AA GH ++LL + DAR + T A G+ + +L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 141 RGAKV 145
GA V
Sbjct: 89 HGADV 93
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 52 DSTMQLLFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 110
D L AC G VE L+ G +N ++ T LH+AA GH ++V+ LL KA
Sbjct: 37 DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 111 NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
+I+A + G+ A ++G +V L A GA V
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 48 PENLDSTMQLLFMAC-SGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
PE +D +F C G+ V L N D+N D G + LH A EG VV++L
Sbjct: 3 PEFMDD----IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58
Query: 106 LSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
+ + A I+ +R T A +G+ ++ L
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G V+ LL D+N+++ G LH A G +V + L++ A + +
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 117 RWGSTAAADAK 127
++G AK
Sbjct: 136 KYGEMPVDKAK 146
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L +AC G + V+ LL+ N DL G T L A GH E+V LLL A+I+A +
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G+TA +A +V V +L GA V
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASV 211
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D + L A G + LL G + + + D LH+A +GH +VVK LL A
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
+ +D G+T A G+ E+ +L GA +
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 58 LFMACSG-DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L ACSG + V LL G +N+ + G TALH A E HV VV+LLL A++ +
Sbjct: 156 LIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215
Query: 117 RWGSTA 122
+ TA
Sbjct: 216 KRQRTA 221
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 62 CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
C+ K + + G+ VN DG + LH+AA G +++ LLL AN AR+ +
Sbjct: 62 CAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV 121
Query: 122 AAADAKYYGNVEVYNILKARGAKVPN 147
A G+ +V L AK PN
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAK-PN 146
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMAC-SGDVKGVEDLLNEGIDVNSID 83
F+ R+ + +R E + + D L AC G VE L+ G +N ++
Sbjct: 5 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 64
Query: 84 LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
T LH+AA GH ++V+ LL KA+I+A + G+ A ++G +V L A GA
Sbjct: 65 RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 144 KV 145
V
Sbjct: 125 LV 126
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L A G V+ LL D+N+++ G LH A G +V + L++ A + +
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 117 RWGSTAAADAK 127
++G AK
Sbjct: 131 KYGEMPVDKAK 141
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 58 LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L +A ++G VEDL+ D+N+ D G+TALH AA + E V +LL AN DA+D
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 58 LFMACSGDVKGVEDLL--NEGIDVNSIDLDGRTALHIAA---CEGHVEVVKLLLSKKANI 112
L A + D GV +L N ++N+ DG T L +AA EG VE L++ A+I
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED---LITADADI 144
Query: 113 DARDRWGSTAAADAKYYGNVEVYNIL 138
+A D G TA A N E NIL
Sbjct: 145 NAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVN-SIDLDGRTALHIAACEGHVEVVKLL 105
+ N DST Q+ + DLL +G ++N ++D G T+LH+AA + K L
Sbjct: 22 IENNEDSTAQV-----------ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 70
Query: 106 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILH 151
L A+ +++D G T A + V+ IL A N +H
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH 116
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS-KKANIDAR 115
L+ G V V+ LL DVN D DG TAL A GH E+ LLL+ +I
Sbjct: 187 LMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT 246
Query: 116 DRWGSTAAADAKYYGNVEVYNILKAR 141
DR GSTA A G E+ ++L +R
Sbjct: 247 DRDGSTALMVALDAGQSEIASMLYSR 272
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA 140
G+TAL +A G V+VVK LL+ +A+++ +D GSTA A +G+ E+ +L A
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 79 VNSIDLDGRTALHIAACEGHVEVVKLLL-SKKANIDARDRWGS-----TAAADAKYYGNV 132
VN D +G TALH + + VV+ LL S +D ++R G TA A K ++
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 133 EV 134
E
Sbjct: 164 ET 165
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D+ L+ + + E LL G +VN D GR LH A GH + L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
+ ARD G A N ++ +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 18 PRRNNMRFSFGRQSSLDPIRRSPVQD-----ELTVPENLDSTMQLLFM---ACSGDVKGV 69
PR ++M G+Q +D + + +D L+ P D+ M A G +
Sbjct: 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSL 75
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
+L+++G VN I D + LH A GH+ VK+LL A ++ T +A
Sbjct: 76 RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135
Query: 130 GNVEVYNILKARGAKV-PNGILHIFFHFRKPRGHL 163
G+ + N+L GA V P L H RGH+
Sbjct: 136 GSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV 170
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 58 LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
LF AC SG V LL G V + D + +H AA GHVE V L++ NID +
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 58 LFMACSGDVKG-VEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
L+ AC G K VE L + I++N + G TALH AA +G+ ++V+LLL+K A D R
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 116 D 116
+
Sbjct: 170 N 170
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 64 GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTA 122
G++ + + L+ + VN +D G TAL+ A GH ++V+ L ++ ++ +++ G TA
Sbjct: 84 GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTA 143
Query: 123 AADAKYYGNVEVYNILKARGAKV 145
A + G ++ +L A+GA+
Sbjct: 144 LHAAAWKGYADIVQLLLAKGART 166
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D+ L+ + + E LL G +VN D GR LH A GH + L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
+ ARD G A N ++ +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D+ L+ + + E LL G +VN D GR LH A GH + L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
+ ARD G A N ++ +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
A G + +L+++G VN I D + LH A GH+ VK+LL A ++
Sbjct: 11 AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 70
Query: 121 TAAADAKYYGNVEVYNILKARGAKV-PNGILHIFFHFRKPRGHL 163
T +A G+ + N+L GA V P L H RGH+
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV 114
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 58 LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
LF AC SG V LL G V + D + +H AA GHVE V L++ NID +
Sbjct: 73 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L++ + G+++ V LL G D + + + +AL +A+ G+ ++V LLL + +I+ D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A + +V+ L ARGA +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADL 128
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
+S + L D+ G+ LL +D+N D +G T L A HV+ V+ LL++ A+
Sbjct: 70 ESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF 153
+ G T A G +V +++ N IL +F
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIE-------NHILKLF 162
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 57 LLFMACSGDVKGVEDLLN-EGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI--- 112
LL A DV+ + LL EG +V+ G TALHIAA ++E +L+ +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 113 --DARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIFFHFR 157
+ G TA A NV + L ARGA V FH+R
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 85 DGRTALHIAACEGHVEVVKLLLSKKANIDARDR-------------WGSTAAADAKYYGN 131
+G+TALHIA +V +V+ LL++ A++ AR +G + A G+
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 132 VEVYNILKARGAKV------PNGILHIFF 154
E+ +L GA + N +LHI
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILI 162
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHI 92
L F AC G + V L+ G D+ + D G T LHI
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
A +G + ++ L+ G DVN++D G +H+A EGH VV L+ ++++ RD G
Sbjct: 82 ARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGL 140
Query: 121 TAAADAKYYGNVEVYNILK 139
T A+ G + +IL+
Sbjct: 141 TPLELARQRGAQNLMDILQ 159
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 36 IRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAAC 95
I + + D+L +L+ST L + G + V L+ G D + ID +G + +H+AA
Sbjct: 62 ISKGAIVDQL--GGDLNST-PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 96 EGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
GH +V L++K ++D D+ G T A Y
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 88 TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK-ARGAK 144
TALH A G+ V+ LLL AN+DA++ G +A AK NV + N L+ AR AK
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
ST ++ G + +L+ G DV D + T LH AA +++VK +SK A +
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
Query: 113 D 113
D
Sbjct: 69 D 69
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 76 GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
G D+NS T LH A +GH+ +V L+ A+ D G + A +G+ +
Sbjct: 72 GGDLNS------TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125
Query: 136 NILKARGAKV 145
L A+G V
Sbjct: 126 AYLIAKGQDV 135
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
A +G + ++ L+ G DVN++D G +H+A EGH VV L+ ++++ RD G
Sbjct: 84 ARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAPESDLHHRDASGL 142
Query: 121 TAAADAKYYGNVEVYNILKA 140
T A+ G + +IL+
Sbjct: 143 TPLELARQRGAQNLMDILQG 162
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L++ + G+++ V LL G D + + + +AL +A+ G+ ++V LLL + +I+ D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
G T A +V+ L ARGA +
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADL 128
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
+S + L D+ G+ LL +D+N D +G T L A HV+ V+ LL++ A+
Sbjct: 70 ESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF 153
+ G T A G +V +++ N IL +F
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIE-------NHILKLF 162
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 51 LDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 110
L+ + LL A +G+++ V+ + E D + + +G TALH A C + +V L++ A
Sbjct: 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 111 NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
N+++ D G T A + + L GA +
Sbjct: 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 62 CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
C + V+ L+ G +VNS D G T LH AA + L+ A I A
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLS 107
EN D L D + V L + G D+N + GRT LH+A V++LLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
A+ AR G T A N + +L+A GA P
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 85 DGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTAAADAKYYGNVEVYNILKAR 141
DG TALH+A H + LL A +D ++ G TA A G L A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 142 GAKV 145
GA V
Sbjct: 68 GAGV 71
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
G+TALH+AA G V+ L + A + +R G TA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLS 107
EN D L D + V L + G D+N + GRT LH+A V++LLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
A+ AR G T A N + +L+A GA P
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 85 DGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTAAADAKYYGNVEVYNILKAR 141
DG TALH+A H + LL A +D ++ G TA A G L A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 142 GAKV 145
GA V
Sbjct: 68 GAGV 71
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
G+TALH+AA G V+ L + A + +R G TA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L++ A G + VE LL G D + +AL +A +G+ ++VK+LL +++ D
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
G T A + +V+ +L GA
Sbjct: 116 WNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
L +ACS G V+ LL+ G+DVN D +G T L A HV+ VK+LL A+
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L++ A G + VE LL G D + +AL +A +G+ ++VK+LL +++ D
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
G T A + +V+ +L GA
Sbjct: 98 WNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
L +ACS G V+ LL+ G+DVN D +G T L A HV+ VK+LL A+
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L++ A G + VE LL G D + +AL +A +G+ ++VK+LL +++ D
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
G T A + +V+ +L GA
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
L +ACS G V+ LL+ G+DVN D +G T L A HV+ VK+LL A+
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
GRTALH AA + +VK L+ +K +N D +D G T A G +EV L +GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 145 V 145
V
Sbjct: 339 V 339
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 57 LLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
L + A + V+ L+ E G + + D DG+T + +AA EG +EVV L+ + A+++A
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 116 DRWGSTA 122
D TA
Sbjct: 343 DATDHTA 349
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 78 DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVYN 136
DV+++D +GRTAL A G + V+LL A++D RD R G TA A Y EV
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 137 ILKARGAKV 145
L GA +
Sbjct: 128 ALVELGADI 136
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
LLF+A G K V L G D++ D+ G TALH+AA EVV+ L+ A+I+
Sbjct: 80 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139
Query: 116 DRWGSTA 122
D G TA
Sbjct: 140 DERGLTA 146
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 77 IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVY 135
+D+ + + DG TALH+A E V+LLL + A+IDA D + G + A ++ +
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 136 NILKARGAKV 145
+L GA V
Sbjct: 167 QLLLQHGANV 176
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 69 VEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 127
V+ LL G D++++D+ GR+ L A + +V+LLL AN++A+ GS+A A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 128 YYGNVEVYNILKARGA 143
G + + L GA
Sbjct: 192 GRGLLPLVRTLVRSGA 207
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 87 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 123
+T LH+A VV+LL++ A+ A DR G TAA
Sbjct: 47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
V+ LL G +VN+ G +ALH A+ G + +V+ L+ A+
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
A +G + ++ L+ G DVN D G +H+A EGH VV L+ ++++ RD G
Sbjct: 82 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGL 140
Query: 121 TAAADAKYYGNVEVYNILK 139
T A G ++ +IL+
Sbjct: 141 TPLELALQRGAQDLVDILQ 159
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 78 DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVYN 136
DV+++D +GRTAL A G + V+LL A++D RD R G TA A Y EV
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 137 ILKARGAKV 145
L GA +
Sbjct: 129 ALVELGADI 137
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 57 LLFMACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
LLF+A G K V L G D++ D+ G TALH+AA EVV+ L+ A+I+
Sbjct: 81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140
Query: 116 DRWGSTA 122
D G TA
Sbjct: 141 DERGLTA 147
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 52 DSTMQLLFMACS-GDVKGVEDLLNEGI--DVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
DS +ACS G+++ V+ L + + D+N I G T LH+A + EV + L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
A++ +D++ A G++++ +L G N
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 83 DLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILK 139
D DGR LH + E+ LLSK N+ D D G T A GN+EV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 140 ARGAK 144
R K
Sbjct: 93 DRPLK 97
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 52 DSTMQLLFMACS-GDVKGVEDLLNEGI--DVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
DS +ACS G+++ V+ L + + D+N I G T LH+A + EV + L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
A++ +D++ A G++++ +L G N
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 83 DLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILK 139
D DGR LH + E+ LLSK N+ D D G T A GN+EV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 140 ARGAK 144
R K
Sbjct: 93 DRPLK 97
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
A +G + ++ L+ G DVN D G +H+A EGH VV L+ ++++ RD G
Sbjct: 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGL 134
Query: 121 TAAADAKYYGNVEVYNILK 139
T A G ++ +IL+
Sbjct: 135 TPLELALQRGAQDLVDILQ 153
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 52 DSTMQLLFMACS-GDVKGVEDLLNEGI--DVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
DS +ACS G+++ V+ L + + D+N I G T LH+A + EV + L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPN 147
A++ +D++ A G++++ +L G N
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 83 DLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILK 139
D DGR LH + E+ LLSK N+ D D G T A GN+EV L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 140 ARGAK 144
R K
Sbjct: 93 DRPLK 97
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 79 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAAADAKYYGNVEVYNI 137
+ + + +G T LH+A+ G++ +V+LL+S A+++A++ G TA A N ++ ++
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 138 LKARGAKV 145
L GA V
Sbjct: 167 LLKCGADV 174
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 69 VEDLLNEGIDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANID 113
VE L++ G DVN+ + +GRTALH+A + ++V LLL A+++
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN------IDARDRWGSTAA 123
E LL G D D G T LH+A +G + V +L + A + G T
Sbjct: 59 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 124 ADAKYYGNVEVYNILKARGAKV 145
A +G + + +L + GA V
Sbjct: 119 HLASIHGYLGIVELLVSLGADV 140
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 79 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAAADAKYYGNVEVYNI 137
+ + + +G T LH+A+ G++ +V+LL+S A+++A++ G TA A N ++ ++
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 138 LKARGAKV 145
L GA V
Sbjct: 170 LLKCGADV 177
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 69 VEDLLNEGIDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANID 113
VE L++ G DVN+ + +GRTALH+A + ++V LLL A+++
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 70 EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN------IDARDRWGSTAA 123
E LL G D D G T LH+A +G + V +L + A + G T
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 124 ADAKYYGNVEVYNILKARGAKV 145
A +G + + +L + GA V
Sbjct: 122 HLASIHGYLGIVELLVSLGADV 143
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 58 LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L +A V+G +EDL+N DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
T A G+ E +L
Sbjct: 156 NREETPLFLAAREGSYETAKVL 177
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 64 GDVKGV-EDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
GD V D + +G + N D G TALH+AA + K LL A+ + +D G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 122 ---AAADAKYYGNVEVYNIL 138
AA A G V+ IL
Sbjct: 61 PLHAAVSADAQG---VFQIL 77
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 58 LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L +A V+G +EDL+N DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 129 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 188
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
T A G+ E +L
Sbjct: 189 NREETPLFLAAREGSYETAKVL 210
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 69 VEDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 124
+ D + +G + N D G TALH+AA + K LL A+ + +D G T AA
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 125 DAKYYGNVEVYNIL 138
A G V+ IL
Sbjct: 100 SADAQG---VFQIL 110
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 58 LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L +A V+G +EDL+N DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
T A G+ E +L
Sbjct: 188 NREETPLFLAAREGSYETAKVL 209
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 69 VEDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 124
+ D + +G + N D G TALH+AA + K LL A+ + +D G T AA
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 125 DAKYYGNVEVYNIL 138
A G V+ IL
Sbjct: 99 SADAQG---VFQIL 109
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 58 LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
L +A V+G +EDL+N DVN++D G++ALH AA +V+ +LL AN D ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
T A G+ E +L
Sbjct: 188 NREETPLFLAAREGSYETAKVL 209
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 69 VEDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 124
+ D + +G + N D G TALH+AA + K LL A+ + +D G T AA
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 125 DAKYYGNVEVYNIL 138
A G V+ IL
Sbjct: 99 SADAQG---VFQIL 109
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANID 113
+Q++ M G + E LL G + N D T +H AA EG ++ + +L A +D
Sbjct: 49 IQVMMM---GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKA 140
RD WG A+ G+ +V L+A
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANID 113
+Q++ M G + E LL G + N D T +H AA EG ++ + +L A +D
Sbjct: 49 IQVMMM---GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKA 140
RD WG A+ G+ +V L+A
Sbjct: 106 VRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
V+ ++ G +++ DG TALH AA + +KLLL +A + + G TA A+
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Query: 129 YGNVEVYNILKARGAKVPNGILHIFFHF 156
+ E +L+ A LH+ + +
Sbjct: 269 KHHKECEELLEQAQAGTFAFPLHVDYSW 296
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 69 VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
V+ ++ G +++ DG TALH AA + +KLLL +A + + G TA A+
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
Query: 129 YGNVEVYNILKARGAKVPNGILHIFFHF 156
+ E +L+ A LH+ + +
Sbjct: 250 KHHKECEELLEQAQAGTFAFPLHVDYSW 277
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D T L+ A +EDL+N DVN++D G++ALH AA +V+ +LL AN
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNIL 138
D ++ T A G+ E +L
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVL 100
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 57 LLFMACSGDVKGVEDLLNEGI-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
LL A D K V+++L + V+ +D +G T L+IA +E+ K L+ + A+I+ +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 116 DRWGSTAAADAKYYGNVEV 134
+ + A G E+
Sbjct: 69 NSISDSPYLYAGAQGRTEI 87
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 78 DVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADA 126
D+N + G AL AA +GH++ VKLLL + +ID ++ +G TA +A
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 72 LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
L+ G D + D GRTA+ A +G+ E+ K+L
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
D T L+ A +EDL+N DVN++D G++ALH AA +V+ +LL AN
Sbjct: 88 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 147
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNIL 138
D ++ T A G+ E +L
Sbjct: 148 KDMQNNKEETPLFLAAREGSYETAKVL 174
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 69 VEDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST---AAA 124
+ D + +G + N D G TALH+AA + K LL A+ +D G T AA
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 125 DAKYYGNVEVYNIL 138
A G V+ IL
Sbjct: 64 SADAQG---VFQIL 74
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 80 NSIDLD-----GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV 134
NS +LD G TALH + E +KLLL KA+I+ + G T AK +
Sbjct: 194 NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 253
Query: 135 YNILKARGAKVPNGILHIFFHFR 157
+L + N +H+ + +R
Sbjct: 254 EELLTQALSGRFNSHVHVEYEWR 276
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 61 ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
A D K V+ LL G+D + D G TAL+ A G+ + VKL + K
Sbjct: 70 ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKK 117
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 90 LHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGI 149
+H+AA +G + V+ L+ + ++R+G TA A +G V+ L + G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE------ 77
Query: 150 LHIFFHFRKP 159
+H +H +KP
Sbjct: 78 VHSLWHGQKP 87
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 70 EDLLNEGID--VNSI-----DLDGRTALHIAACEG--HVEVVKLLLSKKANIDARDRWGS 120
E LLNE + VN I G+TALH G ++E +K+L+ A+ A+D+
Sbjct: 115 ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADE 174
Query: 121 TAAADAKYYGNVEVYNI 137
T A + N E ++
Sbjct: 175 TPLXRAXEFRNREALDL 191
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 86 GRTALHIAACEGHVEVVKLLLS---KKANIDARDRWGST 121
G L +AAC + +VK LL + A+I ARD G+T
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 65 DVKGVEDLLNEGIDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDAR---DRWG 119
DV D L + ++ + D G+TALHIA + +V LL+ A++ A D +
Sbjct: 78 DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFK 137
Query: 120 STAAADAKYYGNV 132
T Y+G +
Sbjct: 138 KTKGRPGFYFGEL 150
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 86 GRTALHIAACEGHVEVVKLLLSKKANIDAR--DRWGSTAAADAKYYGNVEV 134
G +ALHIA + ++ VKLL+ AN+ AR R+ Y+G + +
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPL 145
>pdb|2XUM|S Chain S, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 20
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 98 HVEVVKLLLSKKANIDARDR 117
H+EVVKLLL A++DA+D+
Sbjct: 1 HLEVVKLLLEHGADVDAQDK 20
>pdb|1YGO|A Chain A, Solution Structure Of The Pelle Death Domain
Length = 110
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF 153
A++DA D W A A Y VE + K RG N L+I+
Sbjct: 26 AHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIW 69
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
S L A G V+ V LL G D N+++ GR + + G +V +LLL A
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP 70
Query: 113 DARDRWGST-AAADAKYYGNVEVYNILKARGAKV 145
+ D T DA G ++ +L GA++
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
>pdb|1D2Z|A Chain A, Three-Dimensional Structure Of A Complex Between The Death
Domains Of Pelle And Tube
pdb|1D2Z|C Chain C, Three-Dimensional Structure Of A Complex Between The Death
Domains Of Pelle And Tube
pdb|1IK7|A Chain A, Crystal Structure Of The Uncomplexed Pelle Death Domain
pdb|1IK7|B Chain B, Crystal Structure Of The Uncomplexed Pelle Death Domain
Length = 108
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPNGILHIF 153
A++DA D W A A Y VE + K RG N L+I+
Sbjct: 26 AHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIW 69
>pdb|4B7K|B Chain B, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 20
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 98 HVEVVKLLLSKKANIDARDR 117
H+EVVKLLL A++ A+D+
Sbjct: 1 HLEVVKLLLEHGADVSAQDK 20
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,627,206
Number of Sequences: 62578
Number of extensions: 173455
Number of successful extensions: 863
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 335
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)