BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031236
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72
           P +   CRICH E  +  + L  PC C+G++ F H+ C+Q+W        CE+C  E+
Sbjct: 11 TPSSQDICRICHCEGDDE-SPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 33.1 bits (74), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72
          C IC+EE     N     C C+G ++  HR C+  W     NT C+IC   Y
Sbjct: 9  CWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57


>pdb|2WZA|A Chain A, Two Intramolecular Isopeptide Bonds Are Identified In The
           Crystal Structure Of The Streptococcus Gordonii Sspb C-
           Terminal Domain
          Length = 374

 Score = 29.3 bits (64), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 17/97 (17%)

Query: 59  EKGNTTCEICLQEYGPGYTAPSKKSQLIEAA-VTIRDSLQI-----PR---REHVPRNPR 109
           EKGN    + +Q+Y     AP K   L++ A +T++ + Q+     P    +++V     
Sbjct: 112 EKGNQVSGVSVQQYDSLEAAPKKVQDLLKKANITVKGAFQLFSADNPEEFYKQYVATGTS 171

Query: 110 LVAIAERLSAESHYPQCSSAAGRTAACCRSLALTVRF 146
           LV I + ++ +S +       G+T     + A  + F
Sbjct: 172 LV-ITDPMTVKSEF-------GKTGGKYENKAYQIDF 200


>pdb|2WQS|A Chain A, Crystal Structure Of The C-Terminal Domain Of
           Streptococcus Gordonii Surface Protein Sspb
          Length = 356

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 17/97 (17%)

Query: 59  EKGNTTCEICLQEYGPGYTAPSKKSQLIEAA-VTIRDSLQI-----PR---REHVPRNPR 109
           EKGN    + +Q+Y     AP K   L++ A +T++ + Q+     P    +++V     
Sbjct: 94  EKGNQVSGVSVQQYDSLEAAPKKVQDLLKKANITVKGAFQLFSADNPEEFYKQYVATGTS 153

Query: 110 LVAIAERLSAESHYPQCSSAAGRTAACCRSLALTVRF 146
           LV I + ++ +S +       G+T     + A  + F
Sbjct: 154 LV-ITDPMTVKSEF-------GKTGGKYENKAYQIDF 182


>pdb|2WOY|A Chain A, Crystal Structure Of The C-Terminal Domain Of
           Streptococcus Gordonii Surface Protein Sspb
          Length = 356

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 17/97 (17%)

Query: 59  EKGNTTCEICLQEYGPGYTAPSKKSQLIEAA-VTIRDSLQI-----PR---REHVPRNPR 109
           EKGN    + +Q+Y     AP K   L++ A +T++ + Q+     P    +++V     
Sbjct: 94  EKGNQVSGVSVQQYDSLEAAPKKVQDLLKKANITVKGAFQLFSADNPEEFYKQYVATGTS 153

Query: 110 LVAIAERLSAESHYPQCSSAAGRTAACCRSLALTVRF 146
           LV I +  + +S +       G+T     + A  + F
Sbjct: 154 LV-ITDPXTVKSEF-------GKTGGKYENKAYQIDF 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.133    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,753,147
Number of Sequences: 62578
Number of extensions: 172379
Number of successful extensions: 581
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 10
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)