Query 031236
Match_columns 163
No_of_seqs 248 out of 897
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 2.8E-20 9.7E-25 124.6 4.0 56 16-74 4-59 (60)
2 2d8s_A Cellular modulator of i 99.8 1.6E-19 5.4E-24 127.1 6.4 69 12-81 9-77 (80)
3 2kiz_A E3 ubiquitin-protein li 98.8 3.8E-09 1.3E-13 69.9 5.3 54 15-75 11-64 (69)
4 2l0b_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 74.8 4.5 54 14-74 36-89 (91)
5 2ect_A Ring finger protein 126 98.8 3.3E-09 1.1E-13 71.7 4.5 59 15-80 12-70 (78)
6 1x4j_A Ring finger protein 38; 98.8 2.9E-09 1E-13 71.8 3.9 53 15-74 20-72 (75)
7 2ep4_A Ring finger protein 24; 98.8 9.6E-09 3.3E-13 68.8 6.1 52 16-74 13-64 (74)
8 1iym_A EL5; ring-H2 finger, ub 98.8 3.2E-09 1.1E-13 67.2 3.2 51 16-73 3-54 (55)
9 1v87_A Deltex protein 2; ring- 98.7 2.1E-08 7.1E-13 72.3 5.2 54 18-76 25-96 (114)
10 2ecm_A Ring finger and CHY zin 98.7 1.8E-08 6.3E-13 63.5 3.7 51 16-73 3-54 (55)
11 2ct2_A Tripartite motif protei 98.5 1.4E-07 4.8E-12 64.5 5.3 54 16-74 13-68 (88)
12 2ea6_A Ring finger protein 4; 98.5 7.6E-08 2.6E-12 62.9 3.7 52 15-73 12-67 (69)
13 2ecl_A Ring-box protein 2; RNF 98.5 3E-08 1E-12 68.4 1.7 51 17-74 14-76 (81)
14 1chc_A Equine herpes virus-1 r 98.5 1.5E-07 5.2E-12 61.7 4.2 50 16-74 3-52 (68)
15 3ng2_A RNF4, snurf, ring finge 98.4 1.4E-07 4.7E-12 62.2 3.4 54 14-74 6-63 (71)
16 2xeu_A Ring finger protein 4; 98.4 1.2E-07 4.1E-12 61.0 3.0 51 17-74 2-56 (64)
17 2ct0_A Non-SMC element 1 homol 98.4 4.1E-07 1.4E-11 63.0 4.6 53 16-75 13-65 (74)
18 2yur_A Retinoblastoma-binding 98.3 4.5E-07 1.6E-11 61.0 4.7 48 17-72 14-62 (74)
19 3dpl_R Ring-box protein 1; ubi 98.3 3.3E-07 1.1E-11 67.0 4.2 50 17-73 36-100 (106)
20 2d8t_A Dactylidin, ring finger 98.3 1.9E-07 6.4E-12 62.2 2.6 50 16-75 13-62 (71)
21 2ecn_A Ring finger protein 141 98.3 1.9E-07 6.5E-12 61.7 2.4 48 16-74 13-60 (70)
22 2ysl_A Tripartite motif-contai 98.3 3.4E-07 1.2E-11 60.7 3.4 52 15-74 17-69 (73)
23 2ecy_A TNF receptor-associated 98.3 3.6E-07 1.2E-11 59.9 3.4 51 15-74 12-62 (66)
24 2ecv_A Tripartite motif-contai 98.3 9.9E-07 3.4E-11 59.4 5.2 51 16-74 17-71 (85)
25 2csy_A Zinc finger protein 183 98.3 1E-06 3.5E-11 59.9 4.9 49 15-73 12-60 (81)
26 2ecw_A Tripartite motif-contai 98.2 1E-06 3.5E-11 59.3 4.6 51 16-74 17-71 (85)
27 2djb_A Polycomb group ring fin 98.2 1.5E-06 5E-11 58.0 5.2 48 17-74 14-62 (72)
28 2ysj_A Tripartite motif-contai 98.2 2E-06 6.8E-11 55.7 4.6 47 14-68 16-63 (63)
29 3ztg_A E3 ubiquitin-protein li 98.2 1.6E-06 5.5E-11 60.0 4.4 50 15-72 10-60 (92)
30 1t1h_A Gspef-atpub14, armadill 98.1 1.9E-06 6.4E-11 57.9 4.1 50 16-74 6-55 (78)
31 2ecj_A Tripartite motif-contai 98.1 1.4E-06 4.6E-11 55.2 3.1 45 16-68 13-58 (58)
32 2egp_A Tripartite motif-contai 98.1 7.5E-07 2.5E-11 59.7 1.2 51 16-74 10-65 (79)
33 4a0k_B E3 ubiquitin-protein li 98.0 7E-07 2.4E-11 66.6 0.3 50 18-74 48-112 (117)
34 1g25_A CDK-activating kinase a 98.0 3.1E-06 1.1E-10 55.2 3.2 52 17-74 2-55 (65)
35 4ap4_A E3 ubiquitin ligase RNF 98.0 2.6E-06 9E-11 61.5 2.8 53 15-74 4-60 (133)
36 3lrq_A E3 ubiquitin-protein li 97.9 4.7E-06 1.6E-10 59.2 3.0 48 17-73 21-69 (100)
37 4ayc_A E3 ubiquitin-protein li 97.9 3.9E-06 1.3E-10 62.8 2.6 46 18-73 53-98 (138)
38 3hct_A TNF receptor-associated 97.9 6.6E-06 2.3E-10 59.8 3.8 53 13-74 13-65 (118)
39 1jm7_A BRCA1, breast cancer ty 97.9 7.8E-06 2.7E-10 58.1 3.5 49 18-74 21-70 (112)
40 3fl2_A E3 ubiquitin-protein li 97.9 9.9E-06 3.4E-10 59.2 4.0 48 18-74 52-99 (124)
41 1e4u_A Transcriptional repress 97.9 1.1E-05 3.9E-10 55.6 4.0 54 16-74 9-62 (78)
42 2y43_A E3 ubiquitin-protein li 97.8 8.5E-06 2.9E-10 57.2 3.0 47 18-74 22-69 (99)
43 3k1l_B Fancl; UBC, ring, RWD, 97.8 1.2E-05 3.9E-10 70.6 3.1 60 14-76 304-375 (381)
44 2ckl_B Ubiquitin ligase protei 97.7 1.8E-05 6.1E-10 60.5 3.2 46 19-73 55-101 (165)
45 4ap4_A E3 ubiquitin ligase RNF 97.7 1.6E-05 5.4E-10 57.4 2.6 52 16-74 70-125 (133)
46 2ckl_A Polycomb group ring fin 97.7 1.9E-05 6.6E-10 56.3 2.8 48 17-74 14-62 (108)
47 1z6u_A NP95-like ring finger p 97.6 3.1E-05 1E-09 59.2 3.6 49 18-75 78-126 (150)
48 1rmd_A RAG1; V(D)J recombinati 97.6 3.7E-05 1.3E-09 55.4 3.6 48 18-74 23-70 (116)
49 3l11_A E3 ubiquitin-protein li 97.4 2.2E-05 7.5E-10 56.5 0.0 48 17-73 14-61 (115)
50 2y1n_A E3 ubiquitin-protein li 97.4 0.00014 4.6E-09 64.2 4.4 48 18-74 332-379 (389)
51 3hcs_A TNF receptor-associated 97.3 0.00013 4.4E-09 55.8 3.3 52 14-74 14-65 (170)
52 1jm7_B BARD1, BRCA1-associated 97.2 9.1E-05 3.1E-09 53.6 0.9 45 17-73 21-66 (117)
53 2vje_B MDM4 protein; proto-onc 97.1 0.00022 7.6E-09 46.7 2.6 50 16-73 5-55 (63)
54 2vje_A E3 ubiquitin-protein li 97.1 0.0003 1E-08 46.2 2.6 47 17-73 7-56 (64)
55 4ic3_A E3 ubiquitin-protein li 97.0 0.00016 5.5E-09 48.6 0.9 43 18-74 24-67 (74)
56 3knv_A TNF receptor-associated 96.9 0.00016 5.6E-09 54.6 0.7 48 16-72 29-76 (141)
57 1bor_A Transcription factor PM 96.9 0.0003 1E-08 44.8 1.5 46 16-74 4-49 (56)
58 2kr4_A Ubiquitin conjugation f 96.7 0.0014 4.8E-08 45.2 4.0 48 17-74 13-60 (85)
59 2ea5_A Cell growth regulator w 96.7 0.0016 5.4E-08 43.4 4.1 46 16-75 13-59 (68)
60 2c2l_A CHIP, carboxy terminus 96.7 0.00096 3.3E-08 53.4 3.5 49 17-74 207-255 (281)
61 3nw0_A Non-structural maintena 96.7 0.0014 4.9E-08 53.7 4.5 51 16-74 178-229 (238)
62 2kre_A Ubiquitin conjugation f 96.7 0.0013 4.4E-08 47.0 3.7 48 17-74 28-75 (100)
63 1wim_A KIAA0161 protein; ring 96.6 0.0011 3.7E-08 46.1 2.9 49 16-71 3-61 (94)
64 2yu4_A E3 SUMO-protein ligase 96.5 0.0032 1.1E-07 44.0 4.4 48 16-71 5-59 (94)
65 2ecg_A Baculoviral IAP repeat- 96.4 0.0015 5.1E-08 43.7 2.4 43 18-74 25-68 (75)
66 2f42_A STIP1 homology and U-bo 96.0 0.0034 1.2E-07 49.7 2.8 49 17-74 105-153 (179)
67 1wgm_A Ubiquitin conjugation f 95.7 0.0073 2.5E-07 42.9 3.3 49 17-74 21-69 (98)
68 3t6p_A Baculoviral IAP repeat- 95.0 0.0048 1.7E-07 53.2 0.5 44 17-74 294-338 (345)
69 2yho_A E3 ubiquitin-protein li 94.5 0.011 3.6E-07 40.3 1.0 43 18-74 18-61 (79)
70 3htk_C E3 SUMO-protein ligase 93.3 0.031 1.1E-06 47.0 2.0 50 17-74 180-232 (267)
71 2bay_A PRE-mRNA splicing facto 93.1 0.064 2.2E-06 34.9 2.8 45 19-73 4-49 (61)
72 2lri_C Autoimmune regulator; Z 92.1 0.059 2E-06 35.9 1.7 50 13-71 7-59 (66)
73 1weo_A Cellulose synthase, cat 91.3 0.42 1.5E-05 34.2 5.5 55 17-75 15-71 (93)
74 2ku3_A Bromodomain-containing 81.1 0.32 1.1E-05 32.7 0.1 55 12-70 10-65 (71)
75 1wil_A KIAA1045 protein; ring 81.1 1.1 3.6E-05 31.9 2.8 34 16-56 13-47 (89)
76 2vpb_A Hpygo1, pygopus homolog 77.8 1.1 3.8E-05 29.5 2.0 36 13-53 3-40 (65)
77 1wev_A Riken cDNA 1110020M19; 75.2 0.34 1.1E-05 33.7 -1.3 53 18-74 16-75 (88)
78 2ko5_A Ring finger protein Z; 71.5 2.4 8.3E-05 30.6 2.5 49 18-77 28-76 (99)
79 2ysm_A Myeloid/lymphoid or mix 70.8 0.77 2.6E-05 32.6 -0.3 39 14-58 3-42 (111)
80 3o36_A Transcription intermedi 70.2 0.56 1.9E-05 36.1 -1.2 47 17-72 3-52 (184)
81 2l43_A N-teminal domain from h 69.8 0.8 2.7E-05 31.8 -0.3 53 15-71 22-75 (88)
82 2lbm_A Transcriptional regulat 69.2 3.1 0.00011 31.6 2.8 46 15-69 60-115 (142)
83 1f62_A Transcription factor WS 67.3 1.2 4E-05 27.4 0.1 45 20-70 2-49 (51)
84 3u5n_A E3 ubiquitin-protein li 64.5 0.85 2.9E-05 35.9 -1.2 49 17-73 6-56 (207)
85 3vk6_A E3 ubiquitin-protein li 62.4 7 0.00024 28.2 3.4 34 35-74 16-49 (101)
86 3ql9_A Transcriptional regulat 61.1 8.4 0.00029 28.7 3.8 47 15-69 54-109 (129)
87 1rkl_A Dolichyl-diphosphooligo 60.8 8.8 0.0003 22.8 3.1 25 134-158 8-32 (36)
88 1wep_A PHF8; structural genomi 59.7 13 0.00045 24.7 4.3 53 17-74 11-66 (79)
89 2lat_A Dolichyl-diphosphooligo 58.8 8.4 0.00029 23.0 2.8 25 134-158 8-32 (37)
90 2k16_A Transcription initiatio 58.7 0.96 3.3E-05 29.9 -1.6 51 17-73 17-70 (75)
91 2kwj_A Zinc finger protein DPF 56.0 3.2 0.00011 29.7 0.7 35 19-57 2-42 (114)
92 2yt5_A Metal-response element- 55.6 5.6 0.00019 25.4 1.8 52 15-70 3-60 (66)
93 1wen_A Inhibitor of growth fam 54.6 1.9 6.6E-05 28.8 -0.7 54 10-71 8-65 (71)
94 1weu_A Inhibitor of growth fam 52.1 3.2 0.00011 29.2 0.1 49 15-71 33-85 (91)
95 2ri7_A Nucleosome-remodeling f 51.8 2.9 9.8E-05 31.6 -0.2 53 15-72 5-60 (174)
96 2l5u_A Chromodomain-helicase-D 51.3 5 0.00017 25.7 1.0 46 16-70 9-57 (61)
97 2yql_A PHD finger protein 21A; 51.2 0.87 3E-05 28.7 -2.7 46 15-69 6-54 (56)
98 3v43_A Histone acetyltransfera 46.9 12 0.00041 26.5 2.6 35 17-55 4-43 (112)
99 2xb1_A Pygopus homolog 2, B-ce 46.2 8.5 0.00029 27.3 1.6 53 18-74 3-64 (105)
100 1mm2_A MI2-beta; PHD, zinc fin 44.8 2.1 7.3E-05 27.5 -1.6 45 17-70 8-55 (61)
101 1we9_A PHD finger family prote 44.7 9.9 0.00034 24.1 1.6 52 15-70 3-57 (64)
102 1xwh_A Autoimmune regulator; P 43.9 2.1 7.2E-05 27.8 -1.8 47 15-70 5-54 (66)
103 4gne_A Histone-lysine N-methyl 43.7 6.3 0.00022 28.4 0.6 45 13-68 10-59 (107)
104 2e6r_A Jumonji/ARID domain-con 43.5 1.6 5.6E-05 30.4 -2.5 50 16-71 14-66 (92)
105 2kgg_A Histone demethylase jar 40.1 6.5 0.00022 24.2 0.2 46 20-69 4-52 (52)
106 2vnf_A ING 4, P29ING4, inhibit 39.4 3.1 0.00011 26.7 -1.5 48 15-70 7-58 (60)
107 1fp0_A KAP-1 corepressor; PHD 36.3 12 0.0004 26.2 1.0 47 16-70 23-71 (88)
108 2co8_A NEDD9 interacting prote 36.1 23 0.0008 23.1 2.5 43 15-74 12-54 (82)
109 1wem_A Death associated transc 33.1 20 0.00067 23.5 1.7 49 18-72 16-71 (76)
110 2ro1_A Transcription intermedi 30.7 5.8 0.0002 30.8 -1.5 46 18-71 2-49 (189)
111 1znf_A 31ST zinc finger from X 28.1 21 0.0007 16.8 0.9 12 63-74 2-13 (27)
112 1ard_A Yeast transcription fac 25.9 23 0.00078 16.8 0.8 12 63-74 3-14 (29)
113 1e8j_A Rubredoxin; iron-sulfur 25.6 44 0.0015 20.8 2.3 17 62-78 3-19 (52)
114 3shb_A E3 ubiquitin-protein li 25.1 4 0.00014 27.7 -2.9 25 46-70 49-76 (77)
115 2kvh_A Zinc finger and BTB dom 25.0 21 0.00073 17.0 0.6 12 63-74 4-15 (27)
116 2l4z_A DNA endonuclease RBBP8, 24.8 50 0.0017 23.4 2.8 39 18-73 61-99 (123)
117 2m0f_A Zinc finger and BTB dom 24.7 23 0.0008 16.7 0.7 11 63-73 3-13 (29)
118 2odx_A Cytochrome C oxidase po 23.9 9.5 0.00032 26.2 -1.2 19 62-80 56-74 (80)
119 2lvu_A Zinc finger and BTB dom 29.4 17 0.00057 17.2 0.0 12 63-74 3-14 (26)
120 4rxn_A Rubredoxin; electron tr 23.5 33 0.0011 21.7 1.4 16 62-77 3-18 (54)
121 2jmi_A Protein YNG1, ING1 homo 22.5 8 0.00027 27.1 -1.9 47 16-70 24-75 (90)
122 1x4i_A Inhibitor of growth pro 22.4 10 0.00035 25.0 -1.3 52 15-72 3-56 (70)
123 3mjh_B Early endosome antigen 22.2 24 0.00084 20.4 0.5 11 63-73 6-16 (34)
124 2d8x_A Protein pinch; LIM doma 22.1 55 0.0019 20.2 2.3 42 15-74 2-43 (70)
125 2kvf_A Zinc finger and BTB dom 21.9 27 0.00091 16.6 0.6 12 63-74 4-15 (28)
126 3asl_A E3 ubiquitin-protein li 21.9 6.8 0.00023 25.8 -2.2 45 20-70 20-68 (70)
127 1wew_A DNA-binding family prot 21.8 87 0.003 20.5 3.4 48 16-70 14-71 (78)
128 2g6q_A Inhibitor of growth pro 21.7 5.3 0.00018 25.9 -2.8 47 16-70 9-59 (62)
129 2lv9_A Histone-lysine N-methyl 21.7 47 0.0016 22.9 2.0 47 17-69 27-74 (98)
130 2m0e_A Zinc finger and BTB dom 21.7 30 0.001 16.2 0.8 12 63-74 3-14 (29)
131 2kvg_A Zinc finger and BTB dom 21.3 24 0.00084 16.9 0.4 11 63-73 4-14 (27)
132 2ks1_B Epidermal growth factor 21.2 62 0.0021 19.7 2.3 15 141-155 22-36 (44)
133 2jny_A Uncharacterized BCR; st 21.0 27 0.00092 23.1 0.6 38 35-82 11-48 (67)
134 1klr_A Zinc finger Y-chromosom 21.0 32 0.0011 16.2 0.8 12 63-74 3-14 (30)
135 1rik_A E6APC1 peptide; E6-bind 20.9 29 0.00098 16.5 0.6 12 63-74 3-14 (29)
136 2v3b_B Rubredoxin 2, rubredoxi 20.7 52 0.0018 20.7 1.9 15 63-77 4-18 (55)
137 3ask_A E3 ubiquitin-protein li 20.5 11 0.00039 30.6 -1.6 45 20-70 176-224 (226)
138 2e6s_A E3 ubiquitin-protein li 20.4 7.9 0.00027 26.1 -2.2 44 20-69 28-75 (77)
139 3kqi_A GRC5, PHD finger protei 20.3 26 0.00088 23.0 0.4 52 17-73 9-63 (75)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.79 E-value=2.8e-20 Score=124.60 Aligned_cols=56 Identities=36% Similarity=0.748 Sum_probs=50.1
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
++..+||||+++.+ +++++||+|+||++|||+.||++|++++++.+||+|+++|++
T Consensus 4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46789999998743 347999999999999999999999999999999999999875
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=127.11 Aligned_cols=69 Identities=30% Similarity=0.749 Sum_probs=58.7
Q ss_pred CCCCCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCCccCCCC
Q 031236 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSK 81 (163)
Q Consensus 12 ~~~s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~y~~p~~ 81 (163)
+..+.+...|+||+++.+++ ++++.||+|+|++|+||+.||++|+..+++.+||+|++.|.+....+|+
T Consensus 9 s~~~~~~~~C~IC~~~~~~~-~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDE-SPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSS-SCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCCCCeEcCccccCC-CeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 34456678999999887643 4689999999999999999999999999889999999999877665554
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=3.8e-09 Score=69.90 Aligned_cols=54 Identities=24% Similarity=0.598 Sum_probs=43.5
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~ 75 (163)
.+....|.||++...+.......||+ |.+|..|+.+|++.+ ..||+|++.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccCc
Confidence 45678999999987655556778987 999999999999764 4799999887653
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.82 E-value=3e-09 Score=74.76 Aligned_cols=54 Identities=26% Similarity=0.637 Sum_probs=43.6
Q ss_pred CCCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 14 ~s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
..++...|.||++...+++.....||+ |.+|..|+.+|++ .+..||+|++.+.+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 345678999999887665556678977 9999999999995 45699999987754
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=3.3e-09 Score=71.74 Aligned_cols=59 Identities=22% Similarity=0.521 Sum_probs=45.3
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCCccCCC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPS 80 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~y~~p~ 80 (163)
.+....|.||++...+.......||+ |.+|..||.+|++ .+..||+|++.+...-..++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLE--QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHT--TTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHH--cCCcCcCcCCccCCcccCCC
Confidence 34578999999987655444567877 9999999999995 44699999998875443333
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=2.9e-09 Score=71.76 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=42.8
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
.++...|.||++...+.+.....||+ |.+|..|+.+|++. +..||+|++.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 44678999999987665545678877 99999999999965 4589999987754
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=9.6e-09 Score=68.76 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=41.6
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+....|.||++...+.......||+ |.+|..|+.+|++.+ ..||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVR--KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcC--CcCCCcCccccc
Confidence 4567999999997665444566876 999999999999764 489999988754
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=3.2e-09 Score=67.16 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=41.2
Q ss_pred CCCCeeeEcccCcccCCCceeec-ccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~P-C~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
++...|.||++...+++.....| |+ |.+|..|+++|++ .+.+||+|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 45678999999987665566777 66 9999999999995 4568999997653
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.68 E-value=2.1e-08 Score=72.31 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=41.0
Q ss_pred CCeeeEcccCcccCC---------------CceeecccCCCCCceecHHHHHHHHHH---hCCccccCccccccCCc
Q 031236 18 TSHCRICHEEEFESC---------------NSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPGY 76 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~---------------~~l~~PC~C~Gsl~~vH~~CL~~Wl~~---k~~~~CeiCk~~y~~~y 76 (163)
...|.||++...+.. .....||+ |.+|..||.+|+.. +.+.+||+|+..|....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 469999998864321 11157787 99999999999975 45689999999987543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.65 E-value=1.8e-08 Score=63.49 Aligned_cols=51 Identities=27% Similarity=0.561 Sum_probs=40.8
Q ss_pred CCCCeeeEcccCcccC-CCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 16 ETTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~-~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
.....|.||++...++ ......||+ |.+|..|+.+|++.+ ..||+|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 3567899999986443 335678887 999999999999765 78999997653
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.4e-07 Score=64.46 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=43.6
Q ss_pred CCCCeeeEcccCcccCCC-ceeecccCCCCCceecHHHHHHHHHHh-CCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCN-SLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~-~l~~PC~C~Gsl~~vH~~CL~~Wl~~k-~~~~CeiCk~~y~~ 74 (163)
.+...|.||++...+.+. +...||+ |.+|..|+.+|++.+ +...||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456799999998765433 5678887 999999999999875 46899999988754
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=7.6e-08 Score=62.86 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=40.8
Q ss_pred CCCCCeeeEcccCcccC----CCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 15 PETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~----~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
..+...|.||++...+. ......||+ |.+|..|+.+|++. +..||+|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34678999999986542 122578887 99999999999975 569999998775
No 13
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3e-08 Score=68.44 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=38.3
Q ss_pred CCCeeeEcccCccc-----------CCCceeec-ccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFE-----------SCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~-----------~~~~l~~P-C~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+...|.||+++..+ ++.....| |+ |.+|..||.+|++. +.+||+|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQ--NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHh--CCCCCCcCCCcch
Confidence 46779999887643 22244555 66 99999999999964 4599999988753
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.45 E-value=1.5e-07 Score=61.73 Aligned_cols=50 Identities=28% Similarity=0.640 Sum_probs=40.2
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+....|.||++...+ .....||+ |.+|..|+.+|++.+ ..||+|++.+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 456799999998653 23678887 999999999999643 689999988753
No 15
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.42 E-value=1.4e-07 Score=62.19 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=41.9
Q ss_pred CCCCCCeeeEcccCcccC----CCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 14 NPETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 14 ~s~~~~~CRIC~~~~~~~----~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
.+++...|.||++...+. ......||+ |.+|..|+.+|++.+ ..||+|++.+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 345678999999886432 223578887 999999999999654 599999988763
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.42 E-value=1.2e-07 Score=61.00 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=40.2
Q ss_pred CCCeeeEcccCcccC----CCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~----~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+...|.||++...+. ......||+ |.+|..|+.+|++. +..||+|++.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 567899999986542 223578887 99999999999975 5699999988754
No 17
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=4.1e-07 Score=62.98 Aligned_cols=53 Identities=17% Similarity=0.488 Sum_probs=41.3
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~ 75 (163)
+....|-||++....+ ..-+ .|. +-+|..||.+|++.+++.+||+|++.+...
T Consensus 13 ~~i~~C~IC~~~i~~g---~~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG---QSCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSS---EECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccC---CccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4568999999887543 2222 565 899999999999877778999999888643
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.35 E-value=4.5e-07 Score=61.00 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=40.8
Q ss_pred CCCeeeEcccCcccCCCceeec-ccCCCCCceecHHHHHHHHHHhCCccccCccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~P-C~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y 72 (163)
+...|.||++...+ +...| |+ |.+|..||.+|++.++...||+|++.+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhC---CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 46789999887754 47788 87 999999999999887778999999864
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.35 E-value=3.3e-07 Score=67.02 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=38.1
Q ss_pred CCCeeeEcccCcccC---------------CCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFES---------------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~---------------~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
+...|-||++..++. ......||+ |.+|..||.+|+. .+.+||+|++.|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLK--TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHT--TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHH--cCCcCcCCCCcce
Confidence 357899998876532 112456777 9999999999995 4679999999875
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.9e-07 Score=62.22 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=40.4
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~ 75 (163)
.+...|.||++...+ +...||+ |.+|..|+.+|+. .+..||+|++.+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~Cg-----H~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCK-----HVFCYLCVKGASW--LGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTT-----EEEEHHHHHHCTT--CSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEccCC-----CHHHHHHHHHHHH--CCCcCcCcCchhCHh
Confidence 456789999987643 4678887 9999999999995 447999999887643
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.9e-07 Score=61.68 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=40.5
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
.+...|.||++...+ ...||+ |.+|..|+.+|+. .+..||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC----cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456899999998654 678987 9999999999995 67899999988763
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.4e-07 Score=60.69 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=41.6
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH-hCCccccCccccccC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEICLQEYGP 74 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~-k~~~~CeiCk~~y~~ 74 (163)
.++...|.||++...+ +...||+ |.+|..|+.+|++. ++...||+|++.+..
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3467899999987653 4667887 99999999999974 356799999987753
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.6e-07 Score=59.93 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
..+...|.||++...+ +...||+ |.+|..|+.+|++ +++..||+|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS---PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS---CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC---eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 3467899999987654 3557887 9999999999996 456789999987753
No 24
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=9.9e-07 Score=59.38 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=42.0
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH----hCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE----KGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~----k~~~~CeiCk~~y~~ 74 (163)
.+...|.||++...+ +...||+ |.+|..|+.+|+.. .+...||+|++.+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456899999998754 4567887 99999999999987 357899999988765
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1e-06 Score=59.90 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=40.2
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
.+....|.||++...+ +...||+ |.+|..|+.+|++. ...||+|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456789999988754 5678888 99999999999964 568999998875
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.25 E-value=1e-06 Score=59.29 Aligned_cols=51 Identities=27% Similarity=0.486 Sum_probs=41.9
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHh----CCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK----GNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k----~~~~CeiCk~~y~~ 74 (163)
++...|.||++...+ +...||+ |.+|..|+.+|+..+ +...||+|++.+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc---ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356799999988654 4678887 999999999999874 47899999988764
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.5e-06 Score=57.97 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=39.2
Q ss_pred CCCeeeEcccCcccCCCcee-ecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~-~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+...|.||++...+ +.. .||+ |.+|..|+.+|++. +..||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 46789999988754 344 4888 99999999999965 5799999988764
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2e-06 Score=55.67 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=37.8
Q ss_pred CCCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHh-CCccccCc
Q 031236 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEIC 68 (163)
Q Consensus 14 ~s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k-~~~~CeiC 68 (163)
..++...|.||++...+ +...||+ |.+|..||++|++.+ +...||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999987654 4677887 999999999999853 56789998
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.17 E-value=1.6e-06 Score=60.02 Aligned_cols=50 Identities=24% Similarity=0.486 Sum_probs=42.2
Q ss_pred CCCCCeeeEcccCcccCCCceeec-ccCCCCCceecHHHHHHHHHHhCCccccCccccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~P-C~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y 72 (163)
..+.-.|.||++...+ +...| |+ |.++..||.+|+..++...||+|++.+
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcC---ceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3467899999987653 57888 77 999999999999887888999999876
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.14 E-value=1.9e-06 Score=57.95 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
.+.-.|.||++...+ +...||+ |.+++.|+.+|++ +++.+||+|++.+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 457799999987653 5778887 9999999999996 357899999988754
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.4e-06 Score=55.15 Aligned_cols=45 Identities=24% Similarity=0.672 Sum_probs=36.7
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH-hCCccccCc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEIC 68 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~-k~~~~CeiC 68 (163)
.+...|.||++...+ +...||+ |.+|..|+.+|++. +++..||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 456899999998754 3667887 99999999999864 467889988
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.08 E-value=7.5e-07 Score=59.73 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=41.5
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHh-----CCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-----GNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k-----~~~~CeiCk~~y~~ 74 (163)
++...|.||++...+ +...||+ |.++..|+.+|++.+ +...||+|++.+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 467899999988654 4567887 999999999999763 37899999988764
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.03 E-value=7e-07 Score=66.65 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=0.5
Q ss_pred CCeeeEcccCcccC-------------CC--ceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFES-------------CN--SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~-------------~~--~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|-||+++..+. ++ .+..||+ |.+|..||.+|++. +.+||+|++.|.+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 47899999886431 11 1224666 99999999999965 5689999998753
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.02 E-value=3.1e-06 Score=55.17 Aligned_cols=52 Identities=13% Similarity=0.325 Sum_probs=39.0
Q ss_pred CCCeeeEccc-CcccCCCc-eeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHE-EEFESCNS-LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~-~~~~~~~~-l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
++..|.||++ ...+.... +..||+ |.++..|+.+|+.. +...||+|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3568999998 44333222 467888 99999999999863 56789999987753
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.00 E-value=2.6e-06 Score=61.54 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=41.0
Q ss_pred CCCCCeeeEcccCcccC----CCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 15 PETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~----~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+.+...|.||++...+. ......||+ |.+|..|+.+|++ .+..||+|++.+..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLK--NANTCPTCRKKINH 60 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHT--TCSBCTTTCCBCTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHH--hCCCCCCCCCcCcc
Confidence 34577999999886542 223678888 9999999999995 44599999988864
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.93 E-value=4.7e-06 Score=59.17 Aligned_cols=48 Identities=27% Similarity=0.590 Sum_probs=39.6
Q ss_pred CCCeeeEcccCcccCCCcee-ecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~-~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
+...|.||++...+ +.. .||+ |.+|..||.+|+..++ ..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCCccCCccccC---ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 34689999998754 456 8888 9999999999998654 79999998875
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.93 E-value=3.9e-06 Score=62.78 Aligned_cols=46 Identities=28% Similarity=0.612 Sum_probs=37.9
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
...|.||++...+ +...||+ |.+|..|+.+|+. .+..||+|++.+.
T Consensus 53 ~~~C~iC~~~~~~---~~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCA-----HSFCSYCINEWMK--RKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTS-----CEEEHHHHHHHTT--TCSBCTTTCCBCC
T ss_pred cCCCcccCcccCC---ceECCCC-----CCccHHHHHHHHH--cCCcCCCCCCcCC
Confidence 3579999988653 5778987 9999999999995 4578999998764
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.92 E-value=6.6e-06 Score=59.85 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=41.8
Q ss_pred CCCCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 13 ~~s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...++...|.||++...+ +...||+ |.++..|+.+|++.++ ..||+|+..+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcC---eEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 344466799999987653 4677877 9999999999998654 389999988764
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=7.8e-06 Score=58.08 Aligned_cols=49 Identities=22% Similarity=0.531 Sum_probs=39.6
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHh-CCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k-~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |.+|..|+.+|+..+ +...||+|++.+..
T Consensus 21 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC---eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999987654 4667887 999999999999764 45689999987764
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.87 E-value=9.9e-06 Score=59.19 Aligned_cols=48 Identities=25% Similarity=0.561 Sum_probs=39.4
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |.+|..|+.+|+. .+...||+|++.+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4679999987653 4677887 9999999999997 455699999988754
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.86 E-value=1.1e-05 Score=55.60 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=42.6
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
++...|.||++.... .+....||.|. |.+++.|+.++.+. ++..||+|++.|..
T Consensus 9 ~~~~~CpICle~~~~-~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-DDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT-TTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc-ccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 467799999997642 23467887776 89999999998753 67899999998864
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.84 E-value=8.5e-06 Score=57.23 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=37.9
Q ss_pred CCeeeEcccCcccCCCceee-cccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~-PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +... ||+ |.+|..|+.+|+. .+..||+|++.+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCS-----HNYCSLCIRKFLS--YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHT--TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCC-----CHhhHHHHHHHHH--CCCCCCCCCCcCCh
Confidence 4689999988654 3455 787 9999999999996 45799999987753
No 43
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.75 E-value=1.2e-05 Score=70.62 Aligned_cols=60 Identities=17% Similarity=0.520 Sum_probs=43.8
Q ss_pred CCCCCCeeeEcccCcccCCCceeeccc---CCCCCceecHHHHHHHHHHhCC---------ccccCccccccCCc
Q 031236 14 NPETTSHCRICHEEEFESCNSLEAPCA---CSGTVKFAHRDCIQRWCYEKGN---------TTCEICLQEYGPGY 76 (163)
Q Consensus 14 ~s~~~~~CRIC~~~~~~~~~~l~~PC~---C~Gsl~~vH~~CL~~Wl~~k~~---------~~CeiCk~~y~~~y 76 (163)
..++..+|-||++...++...-...|. |+ +.+|..||.+|+++.++ ..||.|+++....+
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 345678999999987653322234463 66 99999999999987543 58999998776444
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.71 E-value=1.8e-05 Score=60.48 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=37.7
Q ss_pred CeeeEcccCcccCCCceee-cccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 19 SHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 19 ~~CRIC~~~~~~~~~~l~~-PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
..|.||++...+ +... ||+ |.+|..|+.+|+.. ++..||+|+..+.
T Consensus 55 ~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCcccChHhhC---cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 489999988754 3554 887 99999999999973 4788999998874
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.70 E-value=1.6e-05 Score=57.36 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=39.6
Q ss_pred CCCCeeeEcccCcccC----CCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~----~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
++...|.||++...+. ......||+ |.+|..|+.+|++. +..||+|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHc--CCCCCCCCCcCCh
Confidence 4678899999876432 222456776 99999999999965 4599999988764
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.68 E-value=1.9e-05 Score=56.31 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=39.0
Q ss_pred CCCeeeEcccCcccCCCceee-cccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~-PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+...|.||++...+ +... ||+ |.+|..|+.+|+.. +..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECL-----HSFCKTCIVRYLET--SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHTS--CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCC-----ChhhHHHHHHHHHh--CCcCcCCCccccc
Confidence 46789999988654 4565 888 99999999999954 4799999988764
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.64 E-value=3.1e-05 Score=59.19 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=39.9
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~ 75 (163)
...|.||++...+ +...||+ |.++..||.+|+.. +...||+|++.+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 4689999987653 4678988 99999999999974 556899999887653
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.62 E-value=3.7e-05 Score=55.37 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=39.4
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |.++..|+.+|++.+ ...||+|+..+..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC---cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 4689999988653 4678887 999999999999763 5689999988764
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.41 E-value=2.2e-05 Score=56.51 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=39.3
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
+...|.||++...+ +...||+ |.++..|+.+|+.. ++..||+|++.+.
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc---eeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 35689999987653 4677887 99999999999963 4689999998875
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.35 E-value=0.00014 Score=64.19 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=39.9
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |.+|..|+.+|+.. +...||+|++.+..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3699999988643 5789998 89999999999974 56799999987753
No 51
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.31 E-value=0.00013 Score=55.79 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=41.3
Q ss_pred CCCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 14 ~s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
..++.-.|.||++...+ +...||+ +.+.+.|+.+|++.++ .+||+|+..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcC---cEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 34466799999987654 4677876 9999999999998654 499999988764
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.15 E-value=9.1e-05 Score=53.65 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=37.3
Q ss_pred CCCeeeEcccCcccCCCceee-cccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~-PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
+...|.||++...+ +... ||+ |.++..|+.+|+. ..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 45789999988754 4566 887 9999999999996 68999998874
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.13 E-value=0.00022 Score=46.71 Aligned_cols=50 Identities=16% Similarity=0.429 Sum_probs=37.3
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCce-ecHHHHHHHHHHhCCccccCcccccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
+....|.||++...+.. .+..||+ |. +=..|+.+|.+. +..||+|++++.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 35678999999764421 1234998 77 789999999853 478999998764
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.05 E-value=0.0003 Score=46.22 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=36.3
Q ss_pred CCCeeeEcccCcccCCCceee--cccCCCCCce-ecHHHHHHHHHHhCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEA--PCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~--PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
+...|.||++...+ .... ||+ |. +=..|+.+|.+ .+..||+|++.+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTG-----HLMACFTCAKKLKK--RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEE-----EEEECHHHHHHHHH--TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCC-----ChhhHHHHHHHHHH--cCCcCCCcCcchh
Confidence 46789999998654 2444 998 77 45899999995 4568999998765
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.00 E-value=0.00016 Score=48.62 Aligned_cols=43 Identities=19% Similarity=0.617 Sum_probs=35.8
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCce-ecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |. +...|+.+| ..||+|++.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4789999987643 4778998 88 999999999 689999987753
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.95 E-value=0.00016 Score=54.61 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=38.9
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y 72 (163)
++.-.|.||++...+ +..+||+ |.+++.||.+|++ ++...||+|++..
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~FC~~Ci~~~~~-~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCG-----HRYCSFCLASILS-SGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHGG-GSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcC---cEECCCC-----CccCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 456799999987654 4677887 9999999999996 3557899999764
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.90 E-value=0.0003 Score=44.78 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=36.5
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
.+...|.||++...+ +...||+ |.++..|+.+| ...||+|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC---eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 356789999988754 4778987 88999999773 5689999987653
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.73 E-value=0.0014 Score=45.23 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=39.8
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+.-.|.||++-..+ +...||+ +.+-+.|+.+|+.. +.+||+|++.+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 56799999887654 5889986 88999999999974 5799999987753
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0016 Score=43.37 Aligned_cols=46 Identities=20% Similarity=0.520 Sum_probs=36.3
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCce-ecHHHHHHHHHHhCCccccCccccccCC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~~~ 75 (163)
++...|.||++...+ ....||+ |. +-..|+++ ...||+|++.+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 457899999987643 5789999 77 88999973 46899999887643
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.71 E-value=0.00096 Score=53.42 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=39.8
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
..-.|.||++-..+ |.++||+ |.+-+.||.+|+...+. +||+|++++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCch
Confidence 45789999888654 5899987 89999999999986544 49999987753
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.71 E-value=0.0014 Score=53.74 Aligned_cols=51 Identities=20% Similarity=0.594 Sum_probs=39.8
Q ss_pred CCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+....|.||.+--..+ .-|. |. ..+|..|+.+|++.+++..||.|+..++.
T Consensus 178 ~~i~~C~iC~~iv~~g-----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG-----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TTCCBCTTTCSBCSSC-----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCCcCcchhhHHhCC-----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3578999998765432 2333 55 89999999999988788899999988754
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.69 E-value=0.0013 Score=47.01 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+.-.|.||++-..+ +...||+ +.+-+.||.+|+. ++.+||+|++++..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cG-----htf~r~~I~~~l~--~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSG-----TIMDRSIILRHLL--NSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTT-----EEEEHHHHHHHTT--SCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECCCC-----CEEchHHHHHHHH--cCCCCCCCCCCCCh
Confidence 46789999887654 5889986 8899999999996 46799999988754
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.64 E-value=0.0011 Score=46.09 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=37.7
Q ss_pred CCCCeeeEcccCcccCCCcee--ecccCCCCCceecHHHHHHHHHHh---C---CccccC--cccc
Q 031236 16 ETTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYEK---G---NTTCEI--CLQE 71 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~--~PC~C~Gsl~~vH~~CL~~Wl~~k---~---~~~Cei--Ck~~ 71 (163)
.+...|.||++...... +. .||+ |.+-+.|+++++..+ + ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ--MTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGG--EEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccccc--ceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999998865432 33 4788 999999999999764 3 468999 9976
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.0032 Score=44.01 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCCCeeeEcccCcccCCCceeec-ccCCCCCceecHHHHHHHHHHh----CCccccC--cccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEK----GNTTCEI--CLQE 71 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~P-C~C~Gsl~~vH~~CL~~Wl~~k----~~~~Cei--Ck~~ 71 (163)
...-.|.||++-..+ +...| |+ |.+-+.||.+|+... +..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999987653 58886 87 899999999999864 4679999 8865
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.0015 Score=43.68 Aligned_cols=43 Identities=19% Similarity=0.620 Sum_probs=34.0
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCce-ecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |. +...|+++ ...||+|++.+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 3579999988643 4678998 88 99999954 3689999988764
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.00 E-value=0.0034 Score=49.75 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=40.2
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
..-.|.||++-..+ |.+.||+ +.+=+.||.+|+...+. +||+|++++..
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred HhhcccCccccCCC---CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 56789999887654 6888987 88999999999987554 79999987754
No 67
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.72 E-value=0.0073 Score=42.87 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=39.0
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+.-.|.||++-..+ +.+.||+ | +.+-+.||++|+.. +.+||+|++++..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 46789999887654 5788876 2 67899999999964 5699999988764
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.02 E-value=0.0048 Score=53.17 Aligned_cols=44 Identities=20% Similarity=0.626 Sum_probs=36.5
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCce-ecHHHHHHHHHHhCCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+...|.||++...+ +...||+ |. +...|+.+| ..||+|+..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45789999998653 5778998 88 999999988 589999988764
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.47 E-value=0.011 Score=40.29 Aligned_cols=43 Identities=26% Similarity=0.640 Sum_probs=34.5
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCce-ecHHHHHHHHHHhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~-vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
...|.||++...+ +...||+ |. +=..|+.+| ..||+|++.+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhC
Confidence 4689999987643 5788998 77 679999877 399999998764
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.031 Score=46.96 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCCeeeEcccCcccCCCceee-cccCCCCCceecHHHHHHHHHHhCCccccC--ccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEI--CLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~-PC~C~Gsl~~vH~~CL~~Wl~~k~~~~Cei--Ck~~y~~ 74 (163)
..-.|.||++-..+ |..+ .|+ |.+=+.||.+|+...+...||+ |++.+..
T Consensus 180 ~el~CPIcl~~f~D---PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA---PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS---EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC---CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45789999887654 4554 777 8999999999998767789999 9987753
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=93.08 E-value=0.064 Score=34.86 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=35.0
Q ss_pred CeeeEcccCcccCCCceee-cccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 19 SHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 19 ~~CRIC~~~~~~~~~~l~~-PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
-.|.|+++--.+ +.++ +++ +-+=+.|+++|++..+ +||+.++++.
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCCC---CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 468888877653 5777 665 8899999999998654 5999998775
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.07 E-value=0.059 Score=35.93 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=35.1
Q ss_pred CCCCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCcccc
Q 031236 13 SNPETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (163)
Q Consensus 13 ~~s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~ 71 (163)
..+.....|.||.+.. + + .-|. |. +.+|..||.-.+.. ++...|+.|...
T Consensus 7 ~~~~~~~~C~vC~~~~---~--l-l~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 7 QNLAPGARCGVCGDGT---D--V-LRCTHCA---AAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTCCCTTTSCCT---T--C-EECSSSC---CEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred cCCCCCCCcCCCCCCC---e--E-EECCCCC---CceecccCCCccCcCCCCCEECccccCC
Confidence 3444667899997542 1 3 3344 54 89999999877755 367999999854
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.29 E-value=0.42 Score=34.19 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=38.8
Q ss_pred CCCeeeEcccCcc-cCCCceeeccc-CCCCCceecHHHHHHHHHHhCCccccCccccccCC
Q 031236 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (163)
Q Consensus 17 ~~~~CRIC~~~~~-~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~ 75 (163)
....|.||-++-. ..+..+..-|+ |. --+=+.|.+-=.+ .++..|+.||++|+-.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHH-TSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHh-ccCccccccCCccccc
Confidence 5689999987732 22233555666 54 4588899876664 4889999999999743
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=81.14 E-value=0.32 Score=32.71 Aligned_cols=55 Identities=27% Similarity=0.567 Sum_probs=35.5
Q ss_pred CCCCCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHHhCCccccCccc
Q 031236 12 KSNPETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (163)
Q Consensus 12 ~~~s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~ 70 (163)
.+.......|.||...+.++++.+ .-|. |. ..+|..|+.-=..-++...|+.|..
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~l-l~CD~C~---~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNVI-LFCDMCN---LAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSCE-EECSSSC---CEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCE-EECCCCC---CccccccCCCCcCCCCCcCCccCcC
Confidence 344567889999988763333333 3343 55 7999999853223346788888874
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=81.12 E-value=1.1 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.675 Sum_probs=26.0
Q ss_pred CCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHH
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRW 56 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~W 56 (163)
..+..|-||..=+.+ -..||+ |. +.+|..||++=
T Consensus 13 ~~D~~C~VC~~~t~~----~l~pCRvC~---RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE----SLFPCRVCT---RVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSS----CCSSCSSSS---SCCCHHHHHHH
T ss_pred CCCcccCcccccccc----ceecccccc---ccccHhhcccc
Confidence 367899999644332 478998 77 99999999874
No 76
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=77.80 E-value=1.1 Score=29.48 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=21.7
Q ss_pred CCCCCCCeeeEcccCcccCCCceeecc--cCCCCCceecHHHH
Q 031236 13 SNPETTSHCRICHEEEFESCNSLEAPC--ACSGTVKFAHRDCI 53 (163)
Q Consensus 13 ~~s~~~~~CRIC~~~~~~~~~~l~~PC--~C~Gsl~~vH~~CL 53 (163)
+.++....|.+|.....++. .---| .|. .++|..|+
T Consensus 3 ~~~~~~~~C~~C~~p~~~~~--~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDDQ--DAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ------CBCTTTCSBCCTTS--CEEEBTTTTC---CEEEHHHH
T ss_pred CCCCCcCcCccCCCccCCCC--CeEecccCcc---ccCchhcc
Confidence 34567789999998865432 33345 355 89999997
No 77
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.19 E-value=0.34 Score=33.72 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=36.8
Q ss_pred CCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHH------HhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCY------EKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~------~k~~~~CeiCk~~y~~ 74 (163)
...|.+|.....+..+.++ -|. |. ..+|..|+.--+. -++...|+.|....+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll-~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLV-ECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEE-ECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceE-ECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4689999987654333343 333 55 8999999976553 2478999999876653
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.50 E-value=2.4 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=35.2
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCCcc
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYT 77 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~y~ 77 (163)
.--|+.|+.+.. .|+. |+ . ||.=..||..-+ +.+..|+||+++......
T Consensus 28 ~~nCKsCWf~~k----~LV~-C~--d--HYLCl~CLtlmL--~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENK----GLVE-CN--N--HYLCLNCLTLLL--SVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCS----SEEE-CS--S--CEEEHHHHHHTC--SSSSEETTTTEECCCCSC
T ss_pred cccChhhccccC----Ceee-ec--c--hhhHHHHHHHHH--hhccCCcccCCcCCccee
Confidence 357888877643 2554 22 2 999999998877 566799999998865543
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.81 E-value=0.77 Score=32.59 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHH
Q 031236 14 NPETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCY 58 (163)
Q Consensus 14 ~s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~ 58 (163)
..+++..|.||.+..+.+ .| .-|. |. +.+|..||.-...
T Consensus 3 ~~~~~~~C~~C~~~g~~~--~l-l~C~~C~---~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLL--DQ-FFCTTCG---QHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCCSCBTTTCCCCCTT--TS-EECSSSC---CEECTTTTTCCCC
T ss_pred CCCCCCCCcCCCCCCCCc--CC-eECCCCC---CCcChHHhCCccc
Confidence 345788999998875432 23 3333 44 8999999976653
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=70.16 E-value=0.56 Score=36.15 Aligned_cols=47 Identities=21% Similarity=0.470 Sum_probs=32.6
Q ss_pred CCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEY 72 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~y 72 (163)
....|.+|..+.+ ..-|. |. +.+|..|+..-+.. ++...|+.|+..-
T Consensus 3 ~~~~C~~C~~~g~------ll~Cd~C~---~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGE------LLCCEKCP---KVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSS------CEECSSSS---CEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCe------eeecCCCC---cccCccccCCCCCCCCCCCEECccccCcc
Confidence 5678999986531 23343 44 89999998665543 4678999999654
No 81
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.85 E-value=0.8 Score=31.83 Aligned_cols=53 Identities=26% Similarity=0.569 Sum_probs=34.2
Q ss_pred CCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHHhCCccccCcccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQE 71 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~ 71 (163)
.++...|.||...+.++.+ ...-|. |. ..+|..|+.-=..-++...|+.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~-~ll~CD~C~---~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSN-VILFCDMCN---LAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEE-EEEECSSSC---CCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCC-CEEECCCCC---chhhcccCCCCccCCCceECccccCc
Confidence 3567899999887533222 233343 54 68999998533333467889988743
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.22 E-value=3.1 Score=31.59 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=33.3
Q ss_pred CCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHH---------HhCCccccCcc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCY---------EKGNTTCEICL 69 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~---------~k~~~~CeiCk 69 (163)
.+.+..|++|.++.+ + .-|. |. +-+|..||..=+. ..+...|+.|.
T Consensus 60 Dg~~d~C~vC~~GG~-----L-lcCD~Cp---r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN-----L-ICCDFCH---NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS-----E-EECSSSC---CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc-----E-EeCCCCC---CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 345789999987642 2 2332 55 8999999997652 35789999997
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.29 E-value=1.2 Score=27.37 Aligned_cols=45 Identities=27% Similarity=0.667 Sum_probs=27.9
Q ss_pred eeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 20 ~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
.|.||....+++ ...-|. |. +.+|..|+..=+.+ ++...|+.|..
T Consensus 2 ~C~vC~~~~~~~---~ll~Cd~C~---~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD---KLILCDECN---KAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS---CCEECTTTC---CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC---CEEECCCCC---hhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998765432 223333 54 89999998532322 35677888863
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=64.52 E-value=0.85 Score=35.87 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=33.4
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH--hCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~y~ 73 (163)
....|.+|..+.+ ..-|. |--+.+|..|+..-+.. +|...|+.|...-+
T Consensus 6 ~~~~C~~C~~~g~------ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD------LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE------EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc------eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4678999986532 33343 33389999998665543 46789999997543
No 85
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=62.40 E-value=7 Score=28.22 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=28.2
Q ss_pred eeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 35 LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 35 l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
-..||+ |.+=.+|...|-+ +++.+|+.|+.++..
T Consensus 16 RmIPCk-----HvFCydCa~~~~~-~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 16 RMIPCK-----HVFCYDCAILHEK-KGDKMCPGCSDPVQR 49 (101)
T ss_dssp EEETTC-----CEEEHHHHHHHHH-TTCCBCTTTCCBCSE
T ss_pred eecccc-----ccHHHHHHHHHHh-ccCCCCcCcCCeeee
Confidence 368988 9999999999985 467899999987753
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.11 E-value=8.4 Score=28.73 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHH------H---HhCCccccCcc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWC------Y---EKGNTTCEICL 69 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl------~---~k~~~~CeiCk 69 (163)
.+.+..|++|.++.+ ++ -|. +--+-+|.+||.+=+ + .++...|..|.
T Consensus 54 Dg~~~~C~vC~dGG~-----Ll-cCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN-----LI-CCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCSE-----EE-ECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCCe-----eE-ecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 445678999987632 22 232 223899999999752 2 35789999996
No 87
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=60.83 E-value=8.8 Score=22.80 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhee
Q 031236 134 AACCRSLALTVRFLFCEWSSYRVSM 158 (163)
Q Consensus 134 ~~~CR~~ai~lm~lLll~h~l~~~~ 158 (163)
..+++++-+..|+|.++-|++-+|.
T Consensus 8 ~~lan~lG~~~~~LIvlYH~v~~n~ 32 (36)
T 1rkl_A 8 NSLAITFGIVMMTLIVIYHAVDSTM 32 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5688999999999999999998875
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.74 E-value=13 Score=24.66 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=33.3
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHh---CCccccCccccccC
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---GNTTCEICLQEYGP 74 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k---~~~~CeiCk~~y~~ 74 (163)
+...| ||....++ ...|+.==.|. .++|..|+.-=-... ....|+.|.....+
T Consensus 11 ~~~~C-~C~~~~d~-~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNV-NHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCS-SSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCC-CCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 45667 89776542 23455422365 899999985322222 56889999976543
No 89
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=58.82 E-value=8.4 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhee
Q 031236 134 AACCRSLALTVRFLFCEWSSYRVSM 158 (163)
Q Consensus 134 ~~~CR~~ai~lm~lLll~h~l~~~~ 158 (163)
..+++++-+..|+|.++-|++-+|.
T Consensus 8 ~~lan~lG~~~~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3578899999999999999998874
No 90
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=58.67 E-value=0.96 Score=29.95 Aligned_cols=51 Identities=16% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~y~ 73 (163)
+...|.||...+.. +.|+. |. |. .++|..|+.--... .+...|+.|....+
T Consensus 17 ~~~~C~~C~~~~~~--~~mi~-CD~C~---~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDG--SPMIG-CDDCD---DWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSS--CCEEE-CSSSS---SEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCC--CCEEE-cCCCC---cccccccCCCCccCCCCCCEEChhccCchh
Confidence 45668899776532 22432 33 44 89999998543322 25688999986543
No 91
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.97 E-value=3.2 Score=29.75 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred CeeeEcccCcccC-----CCceeeccc-CCCCCceecHHHHHHHH
Q 031236 19 SHCRICHEEEFES-----CNSLEAPCA-CSGTVKFAHRDCIQRWC 57 (163)
Q Consensus 19 ~~CRIC~~~~~~~-----~~~l~~PC~-C~Gsl~~vH~~CL~~Wl 57 (163)
..|.||+....+. .+.|+ -|. |. +.+|..||....
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li-~C~~C~---~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELV-SCADCG---RSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCE-ECSSSC---CEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCe-EeCCCC---CccchhhCCChh
Confidence 4699998765221 12233 343 55 889999997653
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=55.60 E-value=5.6 Score=25.37 Aligned_cols=52 Identities=25% Similarity=0.498 Sum_probs=33.6
Q ss_pred CCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHH-----HhCCccccCccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCY-----EKGNTTCEICLQ 70 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~-----~k~~~~CeiCk~ 70 (163)
+++...|.+|.....+..+.| .-|. |. ..+|..|+.-=+. .++...|+.|..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~l-l~Cd~C~---~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEM-VICDKCG---QGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCE-EECSSSC---CEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCE-EECCCCC---hHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 456789999987753322223 3333 55 8899999864332 346788888873
No 93
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.61 E-value=1.9 Score=28.76 Aligned_cols=54 Identities=26% Similarity=0.674 Sum_probs=33.4
Q ss_pred cCCCCCCCCCeeeEcccCcccCCCceee--cccCCCCCceecHHHHHHHHHH--hCCccccCcccc
Q 031236 10 DFKSNPETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (163)
Q Consensus 10 d~~~~s~~~~~CRIC~~~~~~~~~~l~~--PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~ 71 (163)
+....+++...| ||..... + .|+. -|.|. ..++|..|+. +.. ++...|+.|...
T Consensus 8 ~~~~d~~~~~~C-~C~~~~~-g--~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQVSY-G--EMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCCCTTSCCCS-TTCCCSC-S--SEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred ccccCCCCCCEE-ECCCCCC-C--CEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344445567788 8977643 2 2442 12244 1589999997 433 367889999743
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.07 E-value=3.2 Score=29.19 Aligned_cols=49 Identities=27% Similarity=0.695 Sum_probs=30.8
Q ss_pred CCCCCeeeEcccCcccCCCceee--cccCCCCCceecHHHHHHHHHH--hCCccccCcccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~--PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~ 71 (163)
+++...| ||..... + .|+. -|.|. ..++|..|+. +.. ++...|+.|...
T Consensus 33 ~~e~~yC-iC~~~~~-g--~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-G--EMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCC-S--CCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCC-C--CEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCc
Confidence 3456778 8977643 2 2432 23354 2689999997 332 367899999853
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.80 E-value=2.9 Score=31.60 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=33.1
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH---hCCccccCccccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEY 72 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~---k~~~~CeiCk~~y 72 (163)
.++...| +|....+++ +.++.=-.|. .++|..|+.---.. .+...|+.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~-~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDES-KFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTT-SCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCC-CCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 4567789 998765432 2354422365 99999999532222 3678999998643
No 96
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=51.32 E-value=5 Score=25.68 Aligned_cols=46 Identities=20% Similarity=0.582 Sum_probs=31.0
Q ss_pred CCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
+....|.+|.... + + .-|. |. +.+|..||..-+.+ ++...|+.|..
T Consensus 9 ~~~~~C~vC~~~g---~--l-l~CD~C~---~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---E--I-ILCDTCP---RAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCS---S--E-EECSSSS---CEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCC---c--E-EECCCCC---hhhhhhccCCCCCCCCCCceECccccc
Confidence 4577899998742 1 2 2233 44 89999999764432 46788999974
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.16 E-value=0.87 Score=28.74 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=27.7
Q ss_pred CCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCcc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICL 69 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk 69 (163)
++....|.+|.... + | .-|. |. +.+|..||..-+.. ++...|+.|.
T Consensus 6 ~~~~~~C~vC~~~g---~--l-l~Cd~C~---~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---Q--L-LMCDTCS---RVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSS---C--C-EECSSSS---CEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCC---e--E-EEcCCCC---cceECccCCCCcCCCCCCceEChhhh
Confidence 44678899998752 1 2 2333 44 89999998543322 2455666664
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.91 E-value=12 Score=26.46 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCCeeeEcccCcccC----CCceeeccc-CCCCCceecHHHHHH
Q 031236 17 TTSHCRICHEEEFES----CNSLEAPCA-CSGTVKFAHRDCIQR 55 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~----~~~l~~PC~-C~Gsl~~vH~~CL~~ 55 (163)
....|.+|+..+... .+.|+ -|. |. +.+|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll-~C~~C~---~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI-SCADCG---NSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE-ECTTTC---CEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce-EhhhcC---CCCCCchhcC
Confidence 467899998765321 12343 233 44 8999999953
No 99
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=46.24 E-value=8.5 Score=27.30 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=35.3
Q ss_pred CCeeeEcccCcccCCCceeecc-cCCCCCceecHHHHHHHH---H-----HhCCccccCccccccC
Q 031236 18 TSHCRICHEEEFESCNSLEAPC-ACSGTVKFAHRDCIQRWC---Y-----EKGNTTCEICLQEYGP 74 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC-~C~Gsl~~vH~~CL~~Wl---~-----~k~~~~CeiCk~~y~~ 74 (163)
.-.|.||.....++ ..++.=| .|. .++|..|+.-=- + .++...|+.|...-.+
T Consensus 3 ~~~C~iC~~p~~~~-~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDD-QDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTT-SCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCC-CCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 45799998886443 3466655 787 899999983110 0 1256889999976543
No 100
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=44.79 E-value=2.1 Score=27.48 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=29.3
Q ss_pred CCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
....|.+|.+.. + ..-|. |. +.+|..||..-+.+ ++...|+.|..
T Consensus 8 ~~~~C~vC~~~g---~---ll~Cd~C~---~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 8 HMEFCRVCKDGG---E---LLCCDTCP---SSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCSSCTTTCCCS---S---CBCCSSSC---CCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CCCcCCCCCCCC---C---EEEcCCCC---HHHcccccCCCcCcCCCCccCChhhcC
Confidence 567899998642 1 22333 44 78999998643332 36788999974
No 101
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.68 E-value=9.9 Score=24.06 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=32.6
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH---hCCccccCccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQ 70 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~---k~~~~CeiCk~ 70 (163)
+++...|.||.....++ ..|+.==.|. .++|..|+.--... .....|+.|..
T Consensus 3 ~~e~~~C~~C~~~~~~~-~~mI~Cd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAAD-EFWICCDLCE---MWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSS-SCEEECSSSC---CEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCC-CCEEEccCCC---CCCCccccCcChhHhcCCCcEECCCCcC
Confidence 35677899998776432 3354311354 89999998533221 14577888874
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.93 E-value=2.1 Score=27.85 Aligned_cols=47 Identities=28% Similarity=0.651 Sum_probs=30.9
Q ss_pred CCCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
......|.||.... + | .-|. |. +.+|..||..-+.. ++...|+.|..
T Consensus 5 ~~~~~~C~vC~~~g---~--l-l~CD~C~---~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGG---E--L-ICCDGCP---RAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCS---S--C-EECSSCC---CEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCC---C--E-EEcCCCC---hhhcccccCCCcCcCCCCCeECccccC
Confidence 34678999998652 1 2 2332 44 79999998643322 36778999974
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=43.69 E-value=6.3 Score=28.39 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=28.7
Q ss_pred CCCCCCCeeeEcccCcccCCCceeeccc---CCCCCceecHHHHHHHHHH--hCCccccCc
Q 031236 13 SNPETTSHCRICHEEEFESCNSLEAPCA---CSGTVKFAHRDCIQRWCYE--KGNTTCEIC 68 (163)
Q Consensus 13 ~~s~~~~~CRIC~~~~~~~~~~l~~PC~---C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiC 68 (163)
.....+..|.+|.+.. -..-|. |. +.+|..||. +.. +|+..|+-|
T Consensus 10 ~~~~~~~~C~~C~~~G------~ll~CD~~~Cp---~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGG------ELVMCDKKDCP---KAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp CCCSSCSSCTTTCCCS------EEEECCSTTCC---CEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CcCCCCCCCCcCCCCC------cEeEECCCCCC---cccccccCc--CCcCCCCCEECCCC
Confidence 3445678899998432 245565 66 899999997 433 345555533
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.54 E-value=1.6 Score=30.41 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=32.8
Q ss_pred CCCCeeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hCCccccCcccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~ 71 (163)
.+...|.||.....++ ...-|. |. +.+|..||..=+.. ++...|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~---~ll~CD~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD---KLLFCDGCD---DNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG---GCEECTTTC---CEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC---CEEEcCCCC---chhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456899998876432 233443 55 79999998633322 367889999754
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=40.10 E-value=6.5 Score=24.23 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=27.5
Q ss_pred eeeEcccCcccCCCceeecc-cCCCCCceecHHHHHHHHH--HhCCccccCcc
Q 031236 20 HCRICHEEEFESCNSLEAPC-ACSGTVKFAHRDCIQRWCY--EKGNTTCEICL 69 (163)
Q Consensus 20 ~CRIC~~~~~~~~~~l~~PC-~C~Gsl~~vH~~CL~~Wl~--~k~~~~CeiCk 69 (163)
.|-+|.....+ +..++.=- .|. .++|..|+.-=.. ......|+.|+
T Consensus 4 ~cc~C~~p~~~-~~~mI~Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-KVDWVQCDGGCD---EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-TCCEEECTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-CCcEEEeCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence 46678776643 23465422 366 8999999843221 13667788774
No 106
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=39.40 E-value=3.1 Score=26.70 Aligned_cols=48 Identities=25% Similarity=0.685 Sum_probs=28.0
Q ss_pred CCCCCeeeEcccCcccCCCceee--cccCCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~--PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
+++...| ||...+. +.|+. -|.|+ ..++|..|+. +.. ++...|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~---g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY---GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC---SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC---CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456677 8876543 23442 22243 2689999997 433 25677888763
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.26 E-value=12 Score=26.17 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=31.5
Q ss_pred CCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
+....|.+|.... + + .-|. +--+.+|..||..=+.+ ++...|+.|..
T Consensus 23 ~n~~~C~vC~~~g---~--L-L~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKPG---D--L-VMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSSS---C--C-EECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCCC---C--E-EECC--CCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3567999998753 1 2 2233 33389999998554432 46789999984
No 108
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.12 E-value=23 Score=23.11 Aligned_cols=43 Identities=26% Similarity=0.574 Sum_probs=29.1
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
.+....|.-|.....+.+ .+.. .| +..|..|+ +|..|+..+..
T Consensus 12 ~~~~~~C~~C~~~I~~~e--~v~a---~~--~~wH~~CF----------~C~~C~~~L~~ 54 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLE--RLCV---NG--HFFHRSCF----------RCHTCEATLWP 54 (82)
T ss_dssp CCSSCBCSSSCCBCCTTT--BCCB---TT--BCCBTTTC----------BCSSSCCBCCT
T ss_pred CCCCCCCcccCCCcccce--EEEE---CC--CeeCCCcC----------EEcCCCCCcCC
Confidence 456688999987764332 3332 12 68899995 89999977653
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.11 E-value=20 Score=23.51 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHH-------HhCCccccCccccc
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY-------EKGNTTCEICLQEY 72 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~-------~k~~~~CeiCk~~y 72 (163)
...| ||...... ..|+.==.|. .++|..|+.-=.. ......|+.|....
T Consensus 16 ~~~C-~C~~~~~~--~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNN--RFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCS--SCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCC--CCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4667 78776542 2354422365 8999999842211 23678999998654
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.75 E-value=5.8 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH--hCCccccCcccc
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~~ 71 (163)
...|.+|..+.. ..-|. |--+.+|..|+..=+.. +|...|+.|...
T Consensus 2 ~~~C~~C~~~g~------ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGD------LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSS------CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCc------eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 457999986531 22343 33389999998543332 477899999855
No 111
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.08 E-value=21 Score=16.83 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=8.9
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999987753
No 112
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.87 E-value=23 Score=16.84 Aligned_cols=12 Identities=25% Similarity=0.899 Sum_probs=9.2
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999987753
No 113
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.65 E-value=44 Score=20.85 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=12.5
Q ss_pred CccccCccccccCCccC
Q 031236 62 NTTCEICLQEYGPGYTA 78 (163)
Q Consensus 62 ~~~CeiCk~~y~~~y~~ 78 (163)
...|.+|++.|.+....
T Consensus 3 ~y~C~~CGyvYd~~~Gd 19 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGD 19 (52)
T ss_dssp CEECSSSCCCCCTTTCC
T ss_pred cEEeCCCCeEEcCCcCC
Confidence 35799999998765433
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.15 E-value=4 Score=27.67 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=15.2
Q ss_pred ceecHHHHHHHHHH--hCC-ccccCccc
Q 031236 46 KFAHRDCIQRWCYE--KGN-TTCEICLQ 70 (163)
Q Consensus 46 ~~vH~~CL~~Wl~~--k~~-~~CeiCk~ 70 (163)
+.+|..||.--+.. ++. ..|+.|+.
T Consensus 49 ~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 49 MAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CccCcccCCCcccCCCCCCceECcCccc
Confidence 78899997644432 233 66777753
No 115
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.96 E-value=21 Score=16.96 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.3
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999988753
No 116
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.82 E-value=50 Score=23.44 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=26.5
Q ss_pred CCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCcccccc
Q 031236 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (163)
Q Consensus 18 ~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~ 73 (163)
...|.-|.....+. ..+..-. +..|..|+ +|..|+..+.
T Consensus 61 ~~~C~~C~~~I~~~--~~v~a~~-----~~wH~~CF----------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADR--FLLYAMD-----SYWHSRCL----------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSS--SEEEETT-----EEEETTTS----------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCc--EEEEeCC-----cEEccccc----------CcCcCCCccc
Confidence 46788887765432 2233322 78899995 8999998774
No 117
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.69 E-value=23 Score=16.73 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=8.6
Q ss_pred ccccCcccccc
Q 031236 63 TTCEICLQEYG 73 (163)
Q Consensus 63 ~~CeiCk~~y~ 73 (163)
..|++|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 46999998775
No 118
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=23.94 E-value=9.5 Score=26.21 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=14.4
Q ss_pred CccccCccccccCCccCCC
Q 031236 62 NTTCEICLQEYGPGYTAPS 80 (163)
Q Consensus 62 ~~~CeiCk~~y~~~y~~p~ 80 (163)
...|+.|++.|+..+..++
T Consensus 56 ~~RC~eCG~~fkL~~vg~~ 74 (80)
T 2odx_A 56 VARCWECGSVYKLNPVGVP 74 (80)
T ss_dssp EEECSSSCCEEEECCCC--
T ss_pred CeECCCCCeEEEEEEcCCC
Confidence 4689999999998776554
No 119
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.43 E-value=17 Score=17.22 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.3
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 469999988764
No 120
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.48 E-value=33 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=12.2
Q ss_pred CccccCccccccCCcc
Q 031236 62 NTTCEICLQEYGPGYT 77 (163)
Q Consensus 62 ~~~CeiCk~~y~~~y~ 77 (163)
...|.+|++.|.+...
T Consensus 3 ~y~C~vCGyvYd~~~G 18 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDG 18 (54)
T ss_dssp CEEETTTCCEECTTTC
T ss_pred ceECCCCCeEECCCcC
Confidence 3579999999976543
No 121
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=22.54 E-value=8 Score=27.05 Aligned_cols=47 Identities=21% Similarity=0.584 Sum_probs=29.8
Q ss_pred CCCCeeeEcccCcccCCCcee--ecccCCCCCceecHHHHHHHHHH--hCCccccC-ccc
Q 031236 16 ETTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYE--KGNTTCEI-CLQ 70 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~--~PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~Cei-Ck~ 70 (163)
++...| ||...+.. .|+ --|.|. ..++|..|+. +.. ++...|+. |..
T Consensus 24 ~~~~yC-iC~~~~~g---~MI~CD~c~C~--~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG---PMVACDNPACP--FEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSS---SEECCCSSSCS--CSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCC---CEEEecCCCCc--cccCcCccCC--CCcCCCCCccCChhhcc
Confidence 456778 89765432 244 234454 2689999985 322 36788999 874
No 122
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.36 E-value=10 Score=25.04 Aligned_cols=52 Identities=19% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCCCeeeEcccCcccCCCceee--cccCCCCCceecHHHHHHHHHHhCCccccCccccc
Q 031236 15 PETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~--PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y 72 (163)
+++...| ||...+. + .|+. -|.|+ ..++|..|+.-=-...+...|+.|....
T Consensus 3 ~~~~~yC-~C~~~~~-g--~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY-G--EMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC-S--SEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCC-C--CEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCccc
Confidence 3456677 4866532 2 3442 23353 3799999986211113567899998654
No 123
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.24 E-value=24 Score=20.42 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=9.0
Q ss_pred ccccCcccccc
Q 031236 63 TTCEICLQEYG 73 (163)
Q Consensus 63 ~~CeiCk~~y~ 73 (163)
..||+|++.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 68999998764
No 124
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.05 E-value=55 Score=20.19 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=28.5
Q ss_pred CCCCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHHhCCccccCccccccC
Q 031236 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (163)
Q Consensus 15 s~~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~ 74 (163)
+.....|.-|.....+ . .+..=. +..|..|+ +|..|+..+..
T Consensus 2 s~~~~~C~~C~~~I~~--~-~~~a~~-----~~~H~~CF----------~C~~C~~~L~~ 43 (70)
T 2d8x_A 2 SSGSSGCHQCGEFIIG--R-VIKAMN-----NSWHPECF----------RCDLCQEVLAD 43 (70)
T ss_dssp CCCSSBCSSSCCBCCS--C-CEEETT-----EEECTTTS----------BCSSSCCBCSS
T ss_pred CCCCCcCccCCCEecc--e-EEEECc-----ccccccCC----------EeCCCCCcCCC
Confidence 3456789999776542 1 333322 68899996 79999977653
No 125
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.94 E-value=27 Score=16.62 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.2
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|++|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 479999987753
No 126
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=21.86 E-value=6.8 Score=25.82 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=24.8
Q ss_pred eeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hC-CccccCccc
Q 031236 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KG-NTTCEICLQ 70 (163)
Q Consensus 20 ~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~-~~~CeiCk~ 70 (163)
.|.+|...+..+ ...-|. |. +.+|..||.-=+.+ ++ ...|+.|..
T Consensus 20 ~C~~C~~~~~~~---~ll~CD~C~---~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD---KQLMCDECD---MAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG---GEEECTTTC---CEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC---CEEEcCCCC---CceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455666543322 233454 55 78999998532222 24 566777753
No 127
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.79 E-value=87 Score=20.49 Aligned_cols=48 Identities=25% Similarity=0.532 Sum_probs=29.0
Q ss_pred CCCCeeeEcccCcccCCCceeeccc---CCCCCceecHHHHHHHHHH-------hCCccccCccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEAPCA---CSGTVKFAHRDCIQRWCYE-------KGNTTCEICLQ 70 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~PC~---C~Gsl~~vH~~CL~~Wl~~-------k~~~~CeiCk~ 70 (163)
+....| ||...... ..|+ -|. |. .++|..|+.-=-.. .....|+.|+.
T Consensus 14 ~~~~~C-iC~~~~~~--g~MI-~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 14 EIKVRC-VCGNSLET--DSMI-QCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCC-SSCCCCCC--SCEE-ECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCEEe-ECCCcCCC--CCEE-EECCccCC---ccccCEEEccccccccccccCCCCEECCCCCc
Confidence 466788 88776432 2344 333 66 79999998421111 13577888874
No 128
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.73 E-value=5.3 Score=25.86 Aligned_cols=47 Identities=19% Similarity=0.577 Sum_probs=27.7
Q ss_pred CCCCeeeEcccCcccCCCceee--cccCCCCCceecHHHHHHHHHH--hCCccccCccc
Q 031236 16 ETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (163)
Q Consensus 16 ~~~~~CRIC~~~~~~~~~~l~~--PC~C~Gsl~~vH~~CL~~Wl~~--k~~~~CeiCk~ 70 (163)
++...| ||...+. ..|+. -|.|+ ..++|..|+. +.. ++...|+.|..
T Consensus 9 ~e~~yC-~C~~~~~---g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY---GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC---SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC---CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 456677 8876532 23443 22354 2799999986 322 25677888763
No 129
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=21.73 E-value=47 Score=22.93 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=28.0
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH-hCCccccCcc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEICL 69 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~-k~~~~CeiCk 69 (163)
+...| ||....+++ .|+.==.|. .++|..|+.-=... .+...|+.|+
T Consensus 27 d~vrC-iC~~~~~~~--~mi~Cd~C~---~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG--YMICCDKCS---VWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CBCCC-TTSCCSCSS--CEEEBTTTC---BEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCEEe-ECCCccCCC--cEEEcCCCC---CcCcCcCCCCCccCCCCCEECCCCc
Confidence 34667 886665433 344322365 89999998431111 1357899997
No 130
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.69 E-value=30 Score=16.18 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=9.1
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 469999987753
No 131
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.29 E-value=24 Score=16.94 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.9
Q ss_pred ccccCcccccc
Q 031236 63 TTCEICLQEYG 73 (163)
Q Consensus 63 ~~CeiCk~~y~ 73 (163)
..|++|+..|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 47999998775
No 132
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.24 E-value=62 Score=19.69 Aligned_cols=15 Identities=13% Similarity=-0.150 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhhh
Q 031236 141 ALTVRFLFCEWSSYR 155 (163)
Q Consensus 141 ai~lm~lLll~h~l~ 155 (163)
++.++++++.|.++|
T Consensus 22 ~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 22 LLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 344444555555544
No 133
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.03 E-value=27 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=26.8
Q ss_pred eeecccCCCCCceecHHHHHHHHHHhCCccccCccccccCCccCCCCC
Q 031236 35 LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKK 82 (163)
Q Consensus 35 l~~PC~C~Gsl~~vH~~CL~~Wl~~k~~~~CeiCk~~y~~~y~~p~~~ 82 (163)
+.-| .|+|.+.|.- .++...|+-|+..|++.-.-|...
T Consensus 11 L~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL 48 (67)
T 2jny_A 11 LACP-KDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLL 48 (67)
T ss_dssp CBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCC
T ss_pred hCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeC
Confidence 4555 5888888742 356789999999998765555544
No 134
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.95 E-value=32 Score=16.23 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.1
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 479999987753
No 135
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.93 E-value=29 Score=16.50 Aligned_cols=12 Identities=17% Similarity=0.514 Sum_probs=9.2
Q ss_pred ccccCccccccC
Q 031236 63 TTCEICLQEYGP 74 (163)
Q Consensus 63 ~~CeiCk~~y~~ 74 (163)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 469999988753
No 136
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.67 E-value=52 Score=20.74 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=11.6
Q ss_pred ccccCccccccCCcc
Q 031236 63 TTCEICLQEYGPGYT 77 (163)
Q Consensus 63 ~~CeiCk~~y~~~y~ 77 (163)
..|.+|++.|.....
T Consensus 4 y~C~~CGyvYd~~~G 18 (55)
T 2v3b_B 4 WQCVVCGFIYDEALG 18 (55)
T ss_dssp EEETTTCCEEETTTC
T ss_pred EEeCCCCeEECCCcC
Confidence 479999999876543
No 137
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=20.51 E-value=11 Score=30.56 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=22.6
Q ss_pred eeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hC-CccccCccc
Q 031236 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KG-NTTCEICLQ 70 (163)
Q Consensus 20 ~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~-~~~CeiCk~ 70 (163)
.|.+|......+ ...-|. |. ..+|..||..=+.. ++ ...|+.|..
T Consensus 176 ~C~vC~~~~~~~---~lL~CD~C~---~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD---KQLMCDECD---MAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC-----CCEECSSSC---CEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC---CeEEcCCCC---cceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 466665543322 223343 44 78899998643322 34 667888863
No 138
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.40 E-value=7.9 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.485 Sum_probs=22.5
Q ss_pred eeeEcccCcccCCCceeeccc-CCCCCceecHHHHHHHHHH--hC-CccccCcc
Q 031236 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KG-NTTCEICL 69 (163)
Q Consensus 20 ~CRIC~~~~~~~~~~l~~PC~-C~Gsl~~vH~~CL~~Wl~~--k~-~~~CeiCk 69 (163)
.|.||...+..+ ...-|. |. +.+|..||.-=+.. ++ ...|+.|.
T Consensus 28 ~C~vC~~~~~~~---~ll~CD~C~---~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPN---MQLLCDECN---VAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCST---TEEECSSSC---CEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCC---CEEEcCCCC---ccccccccCCCccCCCCCCCcCCcCcc
Confidence 566776543322 223343 44 67888887532221 23 45566664
No 139
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.33 E-value=26 Score=22.98 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCCeeeEcccCcccCCCceeecccCCCCCceecHHHHHHHHHH---hCCccccCcccccc
Q 031236 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYG 73 (163)
Q Consensus 17 ~~~~CRIC~~~~~~~~~~l~~PC~C~Gsl~~vH~~CL~~Wl~~---k~~~~CeiCk~~y~ 73 (163)
....| ||...+++ +..|+.=-.|. .++|..|+.---.. .+...|+.|.....
T Consensus 9 ~~~yC-iC~~~~~~-~~~MI~Cd~C~---~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 9 VPVYC-VCRLPYDV-TRFMIECDACK---DWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CCEET-TTTEECCT-TSCEEECTTTC---CEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CeeEE-ECCCcCCC-CCCEEEcCCCC---CCEecccccccccccCCCCEEECCCCcccCC
Confidence 34444 77655432 23465533465 89999998532211 14578999986543
Done!