BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031237
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 30 PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
P D+L HN R Q+G+ ++WD LA A+ YAN R GDC L HS GENLA D
Sbjct: 4 PQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKGGGD 61
Query: 90 MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
G A+Q+W+ E Y+Y +N C C HYTQVVWRN+ R+GC R +C+NG F +C
Sbjct: 62 FTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISC 121
Query: 150 NYDPPGNFVGAKP 162
NYDP GN++G +P
Sbjct: 122 NYDPVGNWIGQRP 134
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 25 ANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTP----FG 80
A+ + ++ L AHN R + G+P L L A+ Y+ L+HS G
Sbjct: 5 ASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXG 64
Query: 81 ENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC 140
ENLAWA YD G E W E+K+Y++ GH+T +VW+NT ++G +
Sbjct: 65 ENLAWASYDQTGKEVADRWYSEIKNYNFQQ--PGFTSGTGHFTAMVWKNTKKMGVGKASA 122
Query: 141 HNGNTFFTCNYDPPGNFV 158
+G++F Y P GN V
Sbjct: 123 SDGSSFVVARYFPAGNVV 140
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 25 ANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPF----G 80
A+ + ++ L AHN R + G+P L L A+ Y+ L+HS G
Sbjct: 5 ASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCG 64
Query: 81 ENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC 140
ENLAWA YD G E W E+K+Y++ GH+T +VW+NT ++G +
Sbjct: 65 ENLAWASYDQTGKEVADRWYSEIKNYNFQQ--PGFTSGTGHFTAMVWKNTKKMGVGKASA 122
Query: 141 HNGNTFFTCNYDPPGNFV 158
+G++F Y P GN V
Sbjct: 123 SDGSSFVVARYFPAGNVV 140
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 20 ITLGMANARHPDDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEH 74
I + N D + HN R ++ A + WD LA AK +A+ +C+ H
Sbjct: 9 ILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWAS----NCQFSH 64
Query: 75 SD------------TPFGENLAWADYDM-KGSEAIQMWIDEVKDYDYNSNTCRVPDMCGH 121
+ T GEN+ + S AI W DE++DYD+ + C+ +CGH
Sbjct: 65 NTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCGH 122
Query: 122 YTQVVWRNTARVGCARVKCHNGNTF--------FTCNYDPPGNF 157
YTQVVW ++ +VGCA C + F F CNY P GN+
Sbjct: 123 YTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY 166
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 80 GENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVK 139
GEN+ + Y MK ++ I W DE KD+ Y + GHYTQ+VW + R+GCA
Sbjct: 74 GENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAY 133
Query: 140 CHNG--NTFFTCNYDPPGNFVG--AKPF 163
C + + FF C Y P GNF+G A P+
Sbjct: 134 CPSSPYSYFFVCQYCPAGNFIGKTATPY 161
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 37 HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHS--------DTPFGENL 83
HN +R + A + W+ + A AK +AN C HS GEN+
Sbjct: 14 HNALRRSVKPTARNMLQMKWNSRAAQNAKRWANR----CTFAHSPPNKRTVGKLRCGENI 69
Query: 84 AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
+ S +Q W DE+K++ Y + GHYTQVVW + +GCA KC +
Sbjct: 70 FMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSS 129
Query: 144 NTFFTCNYDPPGNFVGA 160
+ C Y P GN G+
Sbjct: 130 KYLYVCQYCPAGNIRGS 146
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 25/137 (18%)
Query: 44 MGLPALAWDDKLADYAKWYANERRGDCRLEH------SDTPFGENLAWADYDMKG----S 93
+ +P L WD +LA A+ +AN+ C EH G+N+A K +
Sbjct: 74 VKMPNLTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTPN 129
Query: 94 EAIQMWIDEVKDYDYNSNTCRVPD------MCGHYTQVVWRNTARVGCARVKCHNGNT-- 145
E I +W +EVKD+D N P GHYTQ+VW T ++GC R+ +
Sbjct: 130 EMILLWYNEVKDFD-NRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWT 188
Query: 146 --FFTCNYDPPGNFVGA 160
+ CNY P GN +GA
Sbjct: 189 KHYLVCNYGPAGNVLGA 205
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 37 HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHS--------DTPFGENL 83
HN +R + A + W+ A AK +A+ C HS GEN+
Sbjct: 13 HNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR----CTFAHSPPNTRTVGKLRCGENI 68
Query: 84 AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
+ S +Q W DE+K++ Y + GHYTQVVW + +GCA KC +
Sbjct: 69 FMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSS 128
Query: 144 NTFFTCNYDPPGNFVGA 160
+ C Y P GN G+
Sbjct: 129 KYLYVCQYCPAGNIRGS 145
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 80 GENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVK 139
GEN+ A Y K ++ I W E KD+ Y + GHYTQ+VW + R GCA
Sbjct: 74 GENIYMATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAY 133
Query: 140 CHNG--NTFFTCNYDPPGNFVG--AKPF 163
C + + F+ C Y P GN +G A P+
Sbjct: 134 CPSSKYSYFYVCQYCPAGNIIGKTATPY 161
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 37 HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDTPF--------GENL 83
HN +R ++ A + W + A A+ +AN C L HS GE++
Sbjct: 22 HNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESI 77
Query: 84 AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
+ +E I +W DE K++ Y + GHYTQ+VW T R GCA C +
Sbjct: 78 YMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSS 137
Query: 144 --NTFFTCNYDPPGNFVG--AKPF 163
+ F+ C Y P GNF G A P+
Sbjct: 138 AWSYFYVCQYCPSGNFQGKTATPY 161
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 38/172 (22%)
Query: 18 MMITLGMANARHPDDWLHAHNGIR--IQMGL----------PA-----LAWDDKLADYAK 60
++++ G+ + D L HN R I GL PA L W+D+LA A+
Sbjct: 35 VVVSYGLT-KQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQ 93
Query: 61 WYANERRGDCRLEH------SDTPFGENLAW-----ADYDMKGSEAIQMWIDEVKDYDYN 109
+AN+ C+ H + G+N+A A YD + ++MW DEVKDY+
Sbjct: 94 VWANQ----CQYGHDTCRDVAKYQVGQNVALTGSTAAKYD-DPVKLVKMWEDEVKDYNPK 148
Query: 110 SNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG---NTFFTCNYDPPGNF 157
+ GHYTQ+VW NT VGC +K + CNY P GNF
Sbjct: 149 KKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNF 200
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 37 HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDTPF--------GENL 83
HN +R ++ A + W + A A+ +AN C L HS GE++
Sbjct: 22 HNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESI 77
Query: 84 AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
+ +E I +W DE K++ Y + GHYTQ+VW T R GCA C +
Sbjct: 78 YMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSS 137
Query: 144 --NTFFTCNYDPPGNFVG--AKPF 163
+ F+ C Y P GNF G A P+
Sbjct: 138 AWSYFYVCQYCPSGNFQGKTATPY 161
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 66 RRGD-CRLEHS---DTP-FGENLAWA-----DYDMKGSEAIQMWIDEVKDYDYNSNTCRV 115
R G+ C +HS D P GEN+ D + +A Q+W +E+K+Y +
Sbjct: 286 RHGNKCVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLT 345
Query: 116 ------PDM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVG 159
P+M GHYTQ+ W T ++GCA V C N TF C Y P GN++G
Sbjct: 346 TALWNRPNMQIGHYTQMAWDTTYKLGCAVVFC-NDFTFGVCQYGPGGNYMG 395
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 69 DCRLEHSD----TPFGENL-----AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDM- 118
C +HS GEN+ + D +A + W E+ + N +
Sbjct: 69 QCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLF 128
Query: 119 ---CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVG 159
GHYTQ+VW+ T ++GC C N + C Y P GN +G
Sbjct: 129 SRGVGHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPAGNMMG 171
>pdb|4IFA|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of An
Extracellular Protein Containing A Scp Domain From
Bacillus Anthracis Str. Ames
Length = 339
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 38 NGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPF------------------ 79
N IR + LP LAWD + AD A ++ + + + H D+P
Sbjct: 229 NIIRSRHNLPLLAWDQQTADVAIGHSKDXKDNNYFSH-DSPTLGTLGDRLQRGKVGFQLA 287
Query: 80 GENLAWADYDMKGSEAIQMWID 101
GEN+A D G A+Q W++
Sbjct: 288 GENIAAQHSD--GVAALQGWLN 307
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 111
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 112 YVFCCNFNPQSNLIVSGSF 130
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 111
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 112 YVFCCNFNPQSNLIVSGSF 130
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 111
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 112 YVFCCNFNPQSNLIVSGSF 130
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 49 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 107
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 108 YVFCCNFNPQSNLIVSGSF 126
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 67 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 125
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 126 YVFCCNFNPQSNLIVSGSF 144
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 111
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 112 YVFCCNFNPQSNLIVSGSF 130
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 55 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 113
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 114 YVFCCNFNPQSNLIVSGSF 132
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 114
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 115 YVFCCNFNPQSNLIVSGSF 133
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 114
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 115 YVFCCNFNPQSNLIVSGSF 133
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 50 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 108
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 109 YVFCCNFNPQSNLIVSGSF 127
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 46 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 104
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 105 YVFCCNFNPQSNLIVSGSF 123
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 111
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 112 YVFCCNFNPQSNLIVSGSF 130
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 50 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 108
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 109 YVFCCNFNPQSNLIVSGSF 127
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 51 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 109
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 110 YVFCCNFNPQSNLIVSGSF 128
>pdb|2J42|A Chain A, Low Quality Crystal Structure Of The Transport Component
C2- Ii Of The C2-Toxin From Clostridium Botulinum
Length = 721
Score = 28.1 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 30 PDDWLHAHNGIRIQMGLPALAWDDKLA--DYAKWYAN 64
PD+W NG + M A+AWDDK A Y K+ +N
Sbjct: 194 PDEW--EINGYTV-MNQKAVAWDDKFAANGYKKYVSN 227
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 114
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 115 YVFCCNFNPQSNLIVSGSF 133
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 50 AWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAI 96
AW++K A YAK Y E R + P +D+D K E I
Sbjct: 305 AWNEKFAAYAKAYPQEAAEFTRRMKGEMP-------SDFDAKAKEFI 344
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 50 AWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAI 96
AW++K A YAK Y E R + P +D+D K E I
Sbjct: 306 AWNEKFAAYAKAYPQEAAEFTRRMKGEMP-------SDFDAKAKEFI 345
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 74 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 132
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 133 YVFCCNFNPQSNLIVSGSF 151
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 85 WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
W YD K + I + D ++S++ + T +W ++ +K H+ N
Sbjct: 72 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-N 130
Query: 145 TFFTCNYDPPGNFVGAKPF 163
F CN++P N + + F
Sbjct: 131 YVFCCNFNPQSNLIVSGSF 149
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 38 NGIRIQMGLPALAWDDKLA 56
G+++Q GLP LAW LA
Sbjct: 221 KGLKVQTGLPMLAWQGALA 239
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 48 ALAWDDKLADYAKWYANE 65
A+ W+D +DYAK Y NE
Sbjct: 466 AVDWEDANSDYAKQYENE 483
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 26.2 bits (56), Expect = 8.8, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 97 QMWIDEVKDYDYNSNTCRVPDMCGHYTQVVW 127
Q + EVK++ + + + P C H T +W
Sbjct: 29 QKNVHEVKNHKFTARFFKQPTFCSHCTDFIW 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,871,099
Number of Sequences: 62578
Number of extensions: 247558
Number of successful extensions: 667
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 38
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)