Query 031237
Match_columns 163
No_of_seqs 206 out of 1122
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 11:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 1.1E-43 2.3E-48 245.3 15.6 133 30-163 1-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 8.9E-40 1.9E-44 223.8 15.0 128 28-159 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 3.8E-39 8.3E-44 221.3 13.5 128 28-157 1-132 (132)
4 cd05385 SCP_GLIPR-1_like SCP_G 100.0 1.5E-36 3.2E-41 211.5 13.5 121 28-154 1-144 (144)
5 cd05383 SCP_CRISP SCP_CRISP: S 100.0 1.8E-36 3.9E-41 209.7 12.8 121 29-154 2-138 (138)
6 smart00198 SCP SCP / Tpx-1 / A 100.0 6.5E-36 1.4E-40 208.0 12.1 122 29-154 2-144 (144)
7 cd00168 SCP SCP: SCP-like extr 100.0 5.8E-35 1.3E-39 198.0 13.0 117 30-152 1-122 (122)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 9.7E-35 2.1E-39 200.6 11.9 118 30-152 1-136 (136)
9 KOG3017 Defense-related protei 100.0 1.8E-34 3.8E-39 214.6 10.0 132 28-163 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 7.1E-33 1.5E-37 192.2 10.9 118 30-152 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 3.8E-22 8.2E-27 132.7 11.1 114 34-151 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.9 1.8E-20 3.9E-25 127.8 12.0 107 28-152 3-126 (127)
13 cd05379 SCP_bacterial SCP_bact 99.7 1E-16 2.2E-21 107.7 10.7 103 31-151 2-121 (122)
14 COG2340 Uncharacterized protei 99.4 5.1E-12 1.1E-16 92.9 9.0 99 26-141 77-192 (207)
15 KOG0286 G-protein beta subunit 73.9 2.5 5.4E-05 32.9 2.0 35 123-158 78-112 (343)
16 PF11054 Surface_antigen: Spor 57.1 84 0.0018 23.9 12.4 129 30-163 35-218 (254)
17 COG3026 RseB Negative regulato 54.1 28 0.00061 27.1 4.4 38 8-45 5-42 (320)
18 PF11336 DUF3138: Protein of u 51.0 12 0.00026 30.7 2.1 13 52-64 82-94 (514)
19 PF12273 RCR: Chitin synthesis 49.4 35 0.00076 22.9 3.9 23 34-56 19-41 (130)
20 PF03295 Pox_TAA1: Poxvirus tr 42.8 28 0.0006 20.3 2.2 19 28-46 24-42 (63)
21 PRK07718 fliL flagellar basal 42.3 26 0.00056 24.1 2.5 19 1-19 1-19 (142)
22 KOG4439 RNA polymerase II tran 42.2 30 0.00065 30.6 3.2 45 23-67 778-844 (901)
23 PRK10598 lipoprotein; Provisio 40.7 33 0.00072 24.9 2.9 24 25-48 27-50 (186)
24 PRK09759 small toxic polypepti 39.7 39 0.00084 19.0 2.4 18 1-19 1-18 (50)
25 PF08716 nsp7: nsp7 replicase; 37.0 70 0.0015 19.9 3.4 38 4-41 2-40 (83)
26 TIGR03044 PS_II_psb27 photosys 32.5 95 0.0021 21.3 3.9 24 27-50 35-58 (135)
27 PF07312 DUF1459: Protein of u 31.5 31 0.00066 21.4 1.2 6 1-6 1-6 (84)
28 PRK09738 small toxic polypepti 31.3 51 0.0011 18.6 2.1 18 1-19 3-20 (52)
29 PRK13730 conjugal transfer pil 30.5 2.3E+02 0.0049 21.1 7.5 18 91-108 100-117 (212)
30 PF15240 Pro-rich: Proline-ric 27.9 45 0.00098 24.0 1.8 11 15-25 8-18 (179)
31 COG1318 Predicted transcriptio 27.5 50 0.0011 23.7 1.9 19 46-64 39-57 (182)
32 PF08557 Lipid_DES: Sphingolip 27.5 66 0.0014 17.0 2.0 22 28-49 17-38 (39)
33 PF10731 Anophelin: Thrombin i 26.6 88 0.0019 18.3 2.5 13 8-20 5-17 (65)
34 PF08138 Sex_peptide: Sex pept 24.7 24 0.00053 20.0 0.0 17 5-21 1-17 (56)
35 COG1019 Predicted nucleotidylt 23.8 56 0.0012 23.0 1.6 17 34-50 106-122 (158)
36 PF13983 YsaB: YsaB-like lipop 23.3 56 0.0012 19.7 1.3 14 144-157 58-71 (77)
37 PF04863 EGF_alliinase: Alliin 23.2 95 0.0021 17.8 2.2 15 49-63 1-15 (56)
38 cd02164 PPAT_CoAS phosphopante 23.0 63 0.0014 22.2 1.8 20 31-50 100-119 (143)
39 COG3598 RepA RecA-family ATPas 22.7 1.7E+02 0.0036 23.7 4.2 22 27-48 136-157 (402)
40 PF03537 Glyco_hydro_114: Glyc 22.6 63 0.0014 19.4 1.5 19 144-163 49-67 (74)
41 PF04956 TrbC: TrbC/VIRB2 fami 22.4 1E+02 0.0022 19.3 2.6 19 3-21 7-25 (99)
42 PF05324 Sperm_Ag_HE2: Sperm a 22.2 82 0.0018 18.9 1.9 20 2-21 1-20 (73)
43 KOG4634 Mitochondrial F1F0-ATP 21.8 2.4E+02 0.0051 18.3 6.8 67 1-67 1-73 (105)
44 PF11853 DUF3373: Protein of u 21.0 1.4E+02 0.003 25.2 3.6 13 33-45 36-48 (489)
45 PF04272 Phospholamban: Phosph 20.7 87 0.0019 17.1 1.6 13 7-19 33-45 (52)
46 PF11337 DUF3139: Protein of u 20.6 2.2E+02 0.0048 17.5 4.5 17 29-45 32-48 (85)
47 COG5510 Predicted small secret 20.3 1.3E+02 0.0027 16.4 2.2 7 8-14 8-14 (44)
48 PHA00684 hypothetical protein 20.2 34 0.00074 23.1 -0.0 12 130-141 79-90 (128)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.1e-43 Score=245.32 Aligned_cols=133 Identities=59% Similarity=1.218 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecC-CCCHHHHHHHHHhhhccCCC
Q 031237 30 PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADY-DMKGSEAIQMWIDEVKDYDY 108 (163)
Q Consensus 30 ~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~-~~~~~~~v~~W~~e~~~y~~ 108 (163)
.++||+.||.+|+.++|++|+||++||+.||.||++++..|...|+.+.+|||+++... ...+.++|+.|++|...|++
T Consensus 1 ~~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~ 80 (136)
T cd05381 1 PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDY 80 (136)
T ss_pred ChHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence 36899999999999999999999999999999999988889999988789999998763 35788999999999999999
Q ss_pred CCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecC-CCEEEEEEeeCCCCCCCCCCC
Q 031237 109 NSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHN-GNTFFTCNYDPPGNFVGAKPF 163 (163)
Q Consensus 109 ~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y 163 (163)
..+.+.. +. ++|||||||+++++||||++.|.+ +..++||+|+|+||+.|++||
T Consensus 81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 8877665 45 999999999999999999999976 478999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=8.9e-40 Score=223.79 Aligned_cols=128 Identities=41% Similarity=0.797 Sum_probs=113.7
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecCCCCHHHHHHHHHhhhccCC
Q 031237 28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYD 107 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~v~~W~~e~~~y~ 107 (163)
+.++.||+.||.+|+.+++++|+||++|+..||.||++++..|.+.|+...+|||++.+.. ++.++|+.|++|..+|+
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~ 78 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYD 78 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCC
Confidence 4689999999999999999999999999999999997777667789988889999987652 68899999999999999
Q ss_pred CCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCC-CEEEEEEeeCCCCCCC
Q 031237 108 YNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-NTFFTCNYDPPGNFVG 159 (163)
Q Consensus 108 ~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~gn~~g 159 (163)
|..+.+.. .++|||||||+++++||||++.|... .+++||+|+|+||+.|
T Consensus 79 ~~~~~~~~--~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 79 YSNPGFSE--ATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCCCC--cccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 98754322 49999999999999999999999863 6889999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=3.8e-39 Score=221.26 Aligned_cols=128 Identities=36% Similarity=0.669 Sum_probs=113.6
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-CccceEEeecC---CCCHHHHHHHHHhhh
Q 031237 28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-PFGENLAWADY---DMKGSEAIQMWIDEV 103 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-~~Gen~~~~~~---~~~~~~~v~~W~~e~ 103 (163)
+++++||+.||.+|+.++|++|+||++|+..||.||++++..+.+.|+.. .+|||+++... ...+.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999988877777888875 59999998753 567899999999999
Q ss_pred ccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCC
Q 031237 104 KDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNF 157 (163)
Q Consensus 104 ~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~ 157 (163)
.+|++..+.... .++||+||||+++++||||++.|.++.+++||+|+|+||+
T Consensus 81 ~~y~~~~~~~~~--~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGFSS--KTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCCCC--CCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 999997544322 3999999999999999999999987688999999999995
No 4
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.5e-36 Score=211.52 Aligned_cols=121 Identities=37% Similarity=0.781 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHhhC-----CCCCCcccHHHHHHHHHHHHHhhCCCCcccCC------------CCccceEEeec-CC
Q 031237 28 RHPDDWLHAHNGIRIQM-----GLPALAWDDKLADYAKWYANERRGDCRLEHSD------------TPFGENLAWAD-YD 89 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~-----~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------------~~~Gen~~~~~-~~ 89 (163)
+++++||+.||.+|+++ .|++|+||++||..||.|| ++|.+.|+. ..+|||++... +.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a----~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~ 76 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWA----KKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI 76 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHH----hcCCCCCCchhhcccccccccCcccceeeecccCC
Confidence 46899999999999999 4899999999999999999 899888764 24799998765 34
Q ss_pred CCHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCC-----CEEEEEEeeCC
Q 031237 90 MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-----NTFFTCNYDPP 154 (163)
Q Consensus 90 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~ 154 (163)
..+.++|+.|++|..+|+|..+.+.. .++|||||||+++++||||++.|..+ ..++||+|+|+
T Consensus 77 ~~~~~av~~W~~e~~~y~~~~~~~~~--~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYDFDTNSCSR--VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCCC--cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 57899999999999999998766543 49999999999999999999999874 36899999984
No 5
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=1.8e-36 Score=209.72 Aligned_cols=121 Identities=35% Similarity=0.693 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC--------CccceEEeecCCCCHHHH
Q 031237 29 HPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSDT--------PFGENLAWADYDMKGSEA 95 (163)
Q Consensus 29 ~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~--------~~Gen~~~~~~~~~~~~~ 95 (163)
.++.||+.||.+|+.+. |++|+||++||..||.|| ++|.+.|++. .+|||++.......+.++
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~a 77 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWA----NTCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDV 77 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHH----hcCCCcCCchhhcccCCCCcceeeeccCCCCCHHHH
Confidence 57899999999999974 678999999999999999 8999888752 479999987655678899
Q ss_pred HHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC--CEEEEEEeeCC
Q 031237 96 IQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG--NTFFTCNYDPP 154 (163)
Q Consensus 96 v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~ 154 (163)
|+.|++|..+|+|+...+.. +. ++|||||||+++++||||++.|..+ .+++||+|+|+
T Consensus 78 v~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 78 IQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 99999999999998776544 44 9999999999999999999999875 68899999985
No 6
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=6.5e-36 Score=208.01 Aligned_cols=122 Identities=46% Similarity=0.874 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhhCC-----------CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-CccceEEeec-----CCCC
Q 031237 29 HPDDWLHAHNGIRIQMG-----------LPALAWDDKLADYAKWYANERRGDCRLEHSDT-PFGENLAWAD-----YDMK 91 (163)
Q Consensus 29 ~~~~iL~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-~~Gen~~~~~-----~~~~ 91 (163)
.++.||+.||.+|+.++ |++|+||++||..|+.|| +.|...|+.. .+|||+++.. ....
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~ 77 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWA----NQCPFGHSTPRGYGENLAWWSSSTDLPITY 77 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHH----HhCCCcCCCcCCcCcceEEecccCcccchh
Confidence 58899999999999999 999999999999999999 8999988864 7999999865 2357
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCC-CCcchHhhhHhhhcCeeeEEEEEecCCC---EEEEEEeeCC
Q 031237 92 GSEAIQMWIDEVKDYDYNSNTCRVP-DMCGHYTQVVWRNTARVGCARVKCHNGN---TFFTCNYDPP 154 (163)
Q Consensus 92 ~~~~v~~W~~e~~~y~~~~~~~~~~-~~~~~ftq~vw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~ 154 (163)
+.++|+.|++|..+|++.+..+... ..++|||||||+++++||||++.|.++. +++||+|+|+
T Consensus 78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 8899999999999999988776531 2399999999999999999999998863 7999999985
No 7
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=5.8e-35 Score=198.02 Aligned_cols=117 Identities=38% Similarity=0.802 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceEEeecCCCCHHHHHHHHHhhhc
Q 031237 30 PDDWLHAHNGIRIQM-GLPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAWADYDMKGSEAIQMWIDEVK 104 (163)
Q Consensus 30 ~~~iL~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~~~~~~~v~~W~~e~~ 104 (163)
+++||+.||.+|+.+ +|+||+||++|+..||.|| ++|.+.|++. .+|||++......++.++|+.|++|..
T Consensus 1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a----~~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~ 76 (122)
T cd00168 1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYA----NRCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIK 76 (122)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHH----hhccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 367999999999999 9999999999999999999 8999988763 589999988754689999999999999
Q ss_pred cCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEee
Q 031237 105 DYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYD 152 (163)
Q Consensus 105 ~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~ 152 (163)
+|+|.+..... .++||+||||+++++||||++.|+++..++||+|+
T Consensus 77 ~y~~~~~~~~~--~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 77 NYNFGQPGFSS--GTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred hCCCCCCCCCC--CccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 99998554322 49999999999999999999999876899999995
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=9.7e-35 Score=200.58 Aligned_cols=118 Identities=38% Similarity=0.756 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceEEeecC-CCCHHHHHHHH
Q 031237 30 PDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAWADY-DMKGSEAIQMW 99 (163)
Q Consensus 30 ~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~~~~~~-~~~~~~~v~~W 99 (163)
|+.||+.||.+|+.++ |++|+||++||..||.|| ++|.+.|++. .+|||++...+ ...+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYA----RKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHH----HhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 5789999999999985 778999999999999999 8999888762 68999987663 45789999999
Q ss_pred HhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC-------CEEEEEEee
Q 031237 100 IDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG-------NTFFTCNYD 152 (163)
Q Consensus 100 ~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~-------~~~~vC~Y~ 152 (163)
++|..+|+|..+.+.. +. ++|||||||+++++||||++.|.++ ..++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999999998877665 55 9999999999999999999999652 478999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=214.63 Aligned_cols=132 Identities=42% Similarity=0.865 Sum_probs=115.5
Q ss_pred ccHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCC------CCccceEEeecCC-------
Q 031237 28 RHPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSD------TPFGENLAWADYD------- 89 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------~~~Gen~~~~~~~------- 89 (163)
+.+++|++.||.+|..++ |++|+||++||..||.|| ++|.+.|+. +.+|||+++....
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a----~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~ 115 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWA----NTCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD 115 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHH----hhCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence 678999999999999999 999999999999999999 888887763 5679999987643
Q ss_pred CCHHHHHHHHHhhhccCCCCCCCCCCC--CC-cchHhhhHhhhcCeeeEEEEEecCC-----CEEEEEEeeCCCCCCC-C
Q 031237 90 MKGSEAIQMWIDEVKDYDYNSNTCRVP--DM-CGHYTQVVWRNTARVGCARVKCHNG-----NTFFTCNYDPPGNFVG-A 160 (163)
Q Consensus 90 ~~~~~~v~~W~~e~~~y~~~~~~~~~~--~~-~~~ftq~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~gn~~g-~ 160 (163)
.....+++.|+.|...|++.++.+... +. ++|||||||+++++||||++.|.++ .+++||+|+|+||..+ +
T Consensus 116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~ 195 (225)
T KOG3017|consen 116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE 195 (225)
T ss_pred ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence 567789999999999999999988741 34 9999999999999999999999986 5799999999966555 5
Q ss_pred CCC
Q 031237 161 KPF 163 (163)
Q Consensus 161 ~~Y 163 (163)
.||
T Consensus 196 ~~y 198 (225)
T KOG3017|consen 196 IPY 198 (225)
T ss_pred CcC
Confidence 766
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=7.1e-33 Score=192.22 Aligned_cols=118 Identities=40% Similarity=0.771 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhC------------CCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceEEeecCC----
Q 031237 30 PDDWLHAHNGIRIQM------------GLPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAWADYD---- 89 (163)
Q Consensus 30 ~~~iL~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~---- 89 (163)
++.||+.||.+|+.+ .|++|+||++||..|+.|| ++|...|+.. .+|||++.....
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~ 76 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWA----KTCVFEHSPCRNTGGVGQNLAAGSSTGSTV 76 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHH----hcCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence 468999999999999 7999999999999999999 8998888764 689999987632
Q ss_pred -CCHHHHHHHHHhhhccCCCCCC-CCCCCCC-cchHhhhHhhhcCeeeEEEEEecC---CCEEEEEEee
Q 031237 90 -MKGSEAIQMWIDEVKDYDYNSN-TCRVPDM-CGHYTQVVWRNTARVGCARVKCHN---GNTFFTCNYD 152 (163)
Q Consensus 90 -~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~---~~~~~vC~Y~ 152 (163)
..+.++|+.|++|...|++... .+.. +. ++|||||||+++++||||++.|.. ...++||+|+
T Consensus 77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 3688999999999999999875 2222 33 999999999999999999999985 3789999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.88 E-value=3.8e-22 Score=132.66 Aligned_cols=114 Identities=36% Similarity=0.634 Sum_probs=82.4
Q ss_pred HHHHHHHH-hhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCC-CCccceEEeecCCCCHHHH----HHHHHhhhccCC
Q 031237 34 LHAHNGIR-IQMGLPALAWDDKLADYAKWYANERRGDCRLEHSD-TPFGENLAWADYDMKGSEA----IQMWIDEVKDYD 107 (163)
Q Consensus 34 L~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-~~~Gen~~~~~~~~~~~~~----v~~W~~e~~~y~ 107 (163)
|+.||++| ...++++|+||++|+..|+.+| +.|...+.. ...|++............. ++.|+.+...++
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHA----KYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN 76 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHH----TTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhh----HHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence 78999999 8888999999999999999999 777663332 2457888766532222222 899999999988
Q ss_pred CCCC--CCCCCCCcchHhhhHhhhcCeeeEEEEEecCCC--EEEEEEe
Q 031237 108 YNSN--TCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN--TFFTCNY 151 (163)
Q Consensus 108 ~~~~--~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~--~~~vC~Y 151 (163)
+... .......++||+||+|.++++||||++.|..+. +++||.|
T Consensus 77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 7721 111102389999999999999999999998864 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.85 E-value=1.8e-20 Score=127.85 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecCCC
Q 031237 28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADYDM 90 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~ 90 (163)
++++++|+.||.+|.++|++||+||+.|++.|+.||++|+..+.+.|... .+|||++.+. .
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--~ 80 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--S 80 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC--C
Confidence 46889999999999999999999999999999999999999888888752 3489998654 3
Q ss_pred CHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEee
Q 031237 91 KGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYD 152 (163)
Q Consensus 91 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~ 152 (163)
++..+++.|++ +.+|+++|+|++.+++|||++.+++++.|+|-.|.
T Consensus 81 ~~~~~v~~W~~----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F~ 126 (127)
T TIGR02909 81 TVEAVHNAWMN----------------SPGHRANILNPNYTEIGVGYVEGGSGGIYWTQMFI 126 (127)
T ss_pred CHHHHHHHHHc----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEec
Confidence 68899999975 25799999999999999999998887777776653
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.72 E-value=1e-16 Score=107.74 Aligned_cols=103 Identities=25% Similarity=0.435 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecCCCCHH
Q 031237 31 DDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADYDMKGS 93 (163)
Q Consensus 31 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~~~~ 93 (163)
+++++.+|.+|..++++||+||.+|+..|+.+|++|+....+.|... .+|||++.... .+.
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--~~~ 79 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--TAE 79 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC--CHH
Confidence 57899999999999999999999999999999999997766777651 13899887653 688
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEe
Q 031237 94 EAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNY 151 (163)
Q Consensus 94 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y 151 (163)
++++.|+++ .+|+.+|++++.+++|||+....++..++|..|
T Consensus 80 ~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 80 AAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 999999752 579999999999999999999887677777765
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.36 E-value=5.1e-12 Score=92.90 Aligned_cols=99 Identities=24% Similarity=0.376 Sum_probs=85.0
Q ss_pred CCccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecC
Q 031237 26 NARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADY 88 (163)
Q Consensus 26 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~ 88 (163)
.+++.+.+++.+|.+|..+++++|+||.+|+..|+.+++.|+....+.|..+ .+||||+.++.
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~ 156 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN 156 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence 3577888999999999999999999999999999999999999899999762 36999998763
Q ss_pred CCCHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEec
Q 031237 89 DMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCH 141 (163)
Q Consensus 89 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~ 141 (163)
+ ....+|+.|.+ +.+|-++|+-.+-+.+|.|+..-.
T Consensus 157 ~-~~~~~v~~Wl~----------------S~gH~~nll~~~~~~~Gv~~~~~~ 192 (207)
T COG2340 157 D-PPEAAVDGWLN----------------SPGHRKNLLNPAYTEIGVGVAYDA 192 (207)
T ss_pred C-chHHHHHHhcC----------------ChhhhhhccCcchhheeEEEEecC
Confidence 2 22799999964 467999999999999999998754
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=73.92 E-value=2.5 Score=32.89 Aligned_cols=35 Identities=29% Similarity=0.610 Sum_probs=25.6
Q ss_pred hhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCC
Q 031237 123 TQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFV 158 (163)
Q Consensus 123 tq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~ 158 (163)
.-+||+..|.---....-+. ..++.|.|+|.||.+
T Consensus 78 klIvWDs~TtnK~haipl~s-~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPS-SWVMTCAYSPSGNFV 112 (343)
T ss_pred eEEEEEcccccceeEEecCc-eeEEEEEECCCCCeE
Confidence 45889888766555544333 789999999999864
No 16
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=57.05 E-value=84 Score=23.88 Aligned_cols=129 Identities=16% Similarity=0.261 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC-----------cc-cHHHHHHHHHHHHHhhCCCCcccCC------C--Ccc----ceEEe
Q 031237 30 PDDWLHAHNGIRIQMGLPAL-----------AW-DDKLADYAKWYANERRGDCRLEHSD------T--PFG----ENLAW 85 (163)
Q Consensus 30 ~~~iL~~hN~~R~~~~m~~L-----------~W-d~~La~~Aq~~a~~~~~~C~~~~~~------~--~~G----en~~~ 85 (163)
.-++|+.+|..|...|++.. .. +++| .....|- .-|...... . ... -+.++
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~----~iC~~l~pt~~~~~~~~~~~~pf~~GTyAf 109 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWK----KICEHLIPTQAEPAAEASKLNPFKDGTYAF 109 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHH----HHHHHhcCCCCcchhhccccCcCCCCceEe
Confidence 56799999999999985422 11 3333 3444555 445322110 0 011 12232
Q ss_pred ec---CCCCHHHHHHHHHhhhccCCCCCCCCCCC-----CC-cchHhhhHhhhcCe-eeEEEEEecCC------------
Q 031237 86 AD---YDMKGSEAIQMWIDEVKDYDYNSNTCRVP-----DM-CGHYTQVVWRNTAR-VGCARVKCHNG------------ 143 (163)
Q Consensus 86 ~~---~~~~~~~~v~~W~~e~~~y~~~~~~~~~~-----~~-~~~ftq~vw~~t~~-vGCa~~~c~~~------------ 143 (163)
-+ +..+..++|+.|-...++++=-.+..... .. .-.|.-|-..+++- .-|.+..|...
T Consensus 110 ~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~~ 189 (254)
T PF11054_consen 110 KSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQG 189 (254)
T ss_pred eeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCcccccC
Confidence 22 45689999999988777775322221110 11 22344444444433 57888888541
Q ss_pred --------CEEEEEEeeCCCC-CCCCCCC
Q 031237 144 --------NTFFTCNYDPPGN-FVGAKPF 163 (163)
Q Consensus 144 --------~~~~vC~Y~p~gn-~~g~~~Y 163 (163)
++-++|.=.|..- ..|..||
T Consensus 190 d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 190 DSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred CCcccccceEEEEEecCchhhcCCCCCCC
Confidence 5779999998765 5666665
No 17
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=54.10 E-value=28 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHhhCC
Q 031237 8 EFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMG 45 (163)
Q Consensus 8 ~~~~l~l~~~~~~~~~~~~~~~~~~iL~~hN~~R~~~~ 45 (163)
++.+++|...+.+.+.+.+++...++|...|..+.+.+
T Consensus 5 ~~s~~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~ln 42 (320)
T COG3026 5 WFSLLLLLGSLLLSAAASAESASAAWLQKMNEASQSLN 42 (320)
T ss_pred HHHHHHHHHHHhhhhhhhccCccHHHHHHHHHHHHhcC
Confidence 44444444444444444444444599999999998875
No 18
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=51.01 E-value=12 Score=30.74 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHH
Q 031237 52 DDKLADYAKWYAN 64 (163)
Q Consensus 52 d~~La~~Aq~~a~ 64 (163)
++++.+.+|+.|+
T Consensus 82 ~d~~~~~~qqiAn 94 (514)
T PF11336_consen 82 NDDATEMRQQIAN 94 (514)
T ss_pred hHHHHHHHHHHHh
Confidence 7888888888884
No 19
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.35 E-value=35 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=16.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHH
Q 031237 34 LHAHNGIRIQMGLPALAWDDKLA 56 (163)
Q Consensus 34 L~~hN~~R~~~~m~~L~Wd~~La 56 (163)
+-.||+-|++.|+.++.-..-|+
T Consensus 19 ~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 19 FYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHhhcCCCCcCCceecC
Confidence 35689999888988876444343
No 20
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=42.84 E-value=28 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHHHhhCCC
Q 031237 28 RHPDDWLHAHNGIRIQMGL 46 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~~m 46 (163)
+..+++++.+|.+|++-|+
T Consensus 24 ~~Pe~Vi~iIN~lR~keGv 42 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEGV 42 (63)
T ss_pred cCHHHHHHHHHHhhhccCc
Confidence 5688999999999999874
No 21
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=42.30 E-value=26 Score=24.10 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=12.5
Q ss_pred CcccccHHHHHHHHHHHHH
Q 031237 1 MKQRMTTEFCKMLLCSLMM 19 (163)
Q Consensus 1 ~~~~m~~~~~~l~l~~~~~ 19 (163)
||+||..++.+.+++++++
T Consensus 1 ~kkkl~~i~~i~l~~l~~~ 19 (142)
T PRK07718 1 MKNKLIKIMLIILIVIALI 19 (142)
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 8898887666665555433
No 22
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=42.17 E-value=30 Score=30.56 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=35.2
Q ss_pred cccCCccHHHHHHHHHHHHhhCC----------------------CCCCcccHHHHHHHHHHHHHhh
Q 031237 23 GMANARHPDDWLHAHNGIRIQMG----------------------LPALAWDDKLADYAKWYANERR 67 (163)
Q Consensus 23 ~~~~~~~~~~iL~~hN~~R~~~~----------------------m~~L~Wd~~La~~Aq~~a~~~~ 67 (163)
+.....+|+++++..|.-+.... |-.|-||..|+++|+...-+|.
T Consensus 778 Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 778 GQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred CccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 33445789999999999887431 4578999999999999885554
No 23
>PRK10598 lipoprotein; Provisional
Probab=40.75 E-value=33 Score=24.90 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=18.9
Q ss_pred cCCccHHHHHHHHHHHHhhCCCCC
Q 031237 25 ANARHPDDWLHAHNGIRIQMGLPA 48 (163)
Q Consensus 25 ~~~~~~~~iL~~hN~~R~~~~m~~ 48 (163)
.++.+.++.|+.|+.+-.+.|.+-
T Consensus 27 ISE~Ein~yL~k~~~~~k~~G~~g 50 (186)
T PRK10598 27 ISEQEINQYLAKHNNFEKQIGLPG 50 (186)
T ss_pred ecHHHHHHHHHHhccHHHhcCCCc
Confidence 345677889999999999998543
No 24
>PRK09759 small toxic polypeptide; Provisional
Probab=39.69 E-value=39 Score=18.97 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=11.4
Q ss_pred CcccccHHHHHHHHHHHHH
Q 031237 1 MKQRMTTEFCKMLLCSLMM 19 (163)
Q Consensus 1 ~~~~m~~~~~~l~l~~~~~ 19 (163)
|+|| ....+++.+|+.+.
T Consensus 1 mp~k-~~l~~liivCiTvL 18 (50)
T PRK09759 1 MPQK-YRLLSLIVICFTLL 18 (50)
T ss_pred CCce-eeHHHHHHHHHHHH
Confidence 7887 44666666666443
No 25
>PF08716 nsp7: nsp7 replicase; InterPro: IPR014828 Nsp7 (non structural protein 7) has been implicated in viral RNA replication and is predominantly alpha helical in structure []. It forms a hexadecameric supercomplex with Nsp8 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3UB0_C 2AHM_C 2KYS_A 1YSY_A.
Probab=36.99 E-value=70 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHHH-HHhhcccCCccHHHHHHHHHHHH
Q 031237 4 RMTTEFCKMLLCSLM-MITLGMANARHPDDWLHAHNGIR 41 (163)
Q Consensus 4 ~m~~~~~~l~l~~~~-~~~~~~~~~~~~~~iL~~hN~~R 41 (163)
||...=|..++.+-+ ...........=+.+++.||+.=
T Consensus 2 KltD~KcT~VVLl~~L~~l~veanSk~w~~cV~LHN~Il 40 (83)
T PF08716_consen 2 KLTDVKCTNVVLLGLLQKLNVEANSKLWAYCVQLHNEIL 40 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHH
Confidence 455555666655533 33344444556688999999975
No 26
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=32.49 E-value=95 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.3
Q ss_pred CccHHHHHHHHHHHHhhCCCCCCc
Q 031237 27 ARHPDDWLHAHNGIRIQMGLPALA 50 (163)
Q Consensus 27 ~~~~~~iL~~hN~~R~~~~m~~L~ 50 (163)
-+..++-+...+.+|....+++=.
T Consensus 35 g~Y~~DT~~Vi~tlr~~i~lpkd~ 58 (135)
T TIGR03044 35 GDYVEDTLAVIQTLREAIDLPDDD 58 (135)
T ss_pred chHHHHHHHHHHHHHHHHcCCCCC
Confidence 468899999999999999986533
No 27
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=31.51 E-value=31 Score=21.35 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=4.3
Q ss_pred Cccccc
Q 031237 1 MKQRMT 6 (163)
Q Consensus 1 ~~~~m~ 6 (163)
||+|++
T Consensus 1 MF~Kc~ 6 (84)
T PF07312_consen 1 MFQKCI 6 (84)
T ss_pred ChHHHH
Confidence 888854
No 28
>PRK09738 small toxic polypeptide; Provisional
Probab=31.27 E-value=51 Score=18.64 Aligned_cols=18 Identities=11% Similarity=0.646 Sum_probs=11.0
Q ss_pred CcccccHHHHHHHHHHHHH
Q 031237 1 MKQRMTTEFCKMLLCSLMM 19 (163)
Q Consensus 1 ~~~~m~~~~~~l~l~~~~~ 19 (163)
|||| ....+++++|+.+.
T Consensus 3 mp~~-~~~~~livvCiTvL 20 (52)
T PRK09738 3 LPRS-PLVWCVLIVCLTLL 20 (52)
T ss_pred Cccc-eehhhHHHHHHHHH
Confidence 4565 55667777777443
No 29
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=30.50 E-value=2.3e+02 Score=21.07 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.3
Q ss_pred CHHHHHHHHHhhhccCCC
Q 031237 91 KGSEAIQMWIDEVKDYDY 108 (163)
Q Consensus 91 ~~~~~v~~W~~e~~~y~~ 108 (163)
-+.+.++.++.|...+.-
T Consensus 100 MP~~sLk~Ll~qa~~~G~ 117 (212)
T PRK13730 100 IPEEGLKRMLGETRHYGI 117 (212)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 467889999998888753
No 30
>PF15240 Pro-rich: Proline-rich
Probab=27.89 E-value=45 Score=24.04 Aligned_cols=11 Identities=9% Similarity=0.304 Sum_probs=4.4
Q ss_pred HHHHHHhhccc
Q 031237 15 CSLMMITLGMA 25 (163)
Q Consensus 15 ~~~~~~~~~~~ 25 (163)
++||++.++..
T Consensus 8 vALLALSSAQ~ 18 (179)
T PF15240_consen 8 VALLALSSAQS 18 (179)
T ss_pred HHHHHhhhccc
Confidence 33444443333
No 31
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=27.53 E-value=50 Score=23.73 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=16.9
Q ss_pred CCCCcccHHHHHHHHHHHH
Q 031237 46 LPALAWDDKLADYAKWYAN 64 (163)
Q Consensus 46 m~~L~Wd~~La~~Aq~~a~ 64 (163)
..+|+|.++||..|-..|.
T Consensus 39 ~~~lTWvdSLavAAga~ar 57 (182)
T COG1318 39 YERLTWVDSLAVAAGALAR 57 (182)
T ss_pred ccccchhhHHHHHHHHHHH
Confidence 4689999999999999983
No 32
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=27.50 E-value=66 Score=17.03 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHhhCCCCCC
Q 031237 28 RHPDDWLHAHNGIRIQMGLPAL 49 (163)
Q Consensus 28 ~~~~~iL~~hN~~R~~~~m~~L 49 (163)
.-|++||..|=+++...|-.|+
T Consensus 17 ~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 17 SRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHHhChHHHHHhCCCCC
Confidence 3578899999999998886654
No 33
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.62 E-value=88 Score=18.25 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 031237 8 EFCKMLLCSLMMI 20 (163)
Q Consensus 8 ~~~~l~l~~~~~~ 20 (163)
++.+.+||+++..
T Consensus 5 l~vialLC~aLva 17 (65)
T PF10731_consen 5 LIVIALLCVALVA 17 (65)
T ss_pred hhHHHHHHHHHHH
Confidence 5566667765543
No 34
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=24.75 E-value=24 Score=19.98 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHh
Q 031237 5 MTTEFCKMLLCSLMMIT 21 (163)
Q Consensus 5 m~~~~~~l~l~~~~~~~ 21 (163)
|+.++.+++|.+++..+
T Consensus 1 Mk~p~~llllvlllGla 17 (56)
T PF08138_consen 1 MKTPIFLLLLVLLLGLA 17 (56)
T ss_dssp -----------------
T ss_pred CcchHHHHHHHHHHHHH
Confidence 44455555555444433
No 35
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=23.83 E-value=56 Score=22.98 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.7
Q ss_pred HHHHHHHHhhCCCCCCc
Q 031237 34 LHAHNGIRIQMGLPALA 50 (163)
Q Consensus 34 L~~hN~~R~~~~m~~L~ 50 (163)
-..+|+.|.+.|++||+
T Consensus 106 Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 106 ALKINEIREKRGLPPLE 122 (158)
T ss_pred HHHHHHHHHHCCCCCeE
Confidence 35799999999999985
No 36
>PF13983 YsaB: YsaB-like lipoprotein
Probab=23.35 E-value=56 Score=19.65 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=11.1
Q ss_pred CEEEEEEeeCCCCC
Q 031237 144 NTFFTCNYDPPGNF 157 (163)
Q Consensus 144 ~~~~vC~Y~p~gn~ 157 (163)
..-+||.|+|.|-.
T Consensus 58 ~E~FvCSFD~dGqF 71 (77)
T PF13983_consen 58 KEGFVCSFDADGQF 71 (77)
T ss_pred ccceEEeECCCCcE
Confidence 45789999998754
No 37
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=23.18 E-value=95 Score=17.79 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.2
Q ss_pred CcccHHHHHHHHHHH
Q 031237 49 LAWDDKLADYAKWYA 63 (163)
Q Consensus 49 L~Wd~~La~~Aq~~a 63 (163)
|+|...-++.|+..|
T Consensus 1 l~Wt~~Aa~eAeavA 15 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVA 15 (56)
T ss_dssp -STTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhh
Confidence 689999999999999
No 38
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=23.03 E-value=63 Score=22.22 Aligned_cols=20 Identities=25% Similarity=0.074 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhCCCCCCc
Q 031237 31 DDWLHAHNGIRIQMGLPALA 50 (163)
Q Consensus 31 ~~iL~~hN~~R~~~~m~~L~ 50 (163)
..--..+|+.|.+.|++||+
T Consensus 100 ~~~~~~iN~~R~~~gl~pl~ 119 (143)
T cd02164 100 YPGALKINRKREENGLSPLE 119 (143)
T ss_pred hhhHHHHHHHHHHCCCCcee
Confidence 33457899999999999885
No 39
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=22.69 E-value=1.7e+02 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred CccHHHHHHHHHHHHhhCCCCC
Q 031237 27 ARHPDDWLHAHNGIRIQMGLPA 48 (163)
Q Consensus 27 ~~~~~~iL~~hN~~R~~~~m~~ 48 (163)
++++..+|...|.+|...+++|
T Consensus 136 El~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 136 ELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred ccChHHHHHHHHHHHHHcCCCh
Confidence 6899999999999999999765
No 40
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=22.62 E-value=63 Score=19.44 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=13.1
Q ss_pred CEEEEEEeeCCCCCCCCCCC
Q 031237 144 NTFFTCNYDPPGNFVGAKPF 163 (163)
Q Consensus 144 ~~~~vC~Y~p~gn~~g~~~Y 163 (163)
+..++|+++ .|-...-++|
T Consensus 49 G~~vicY~s-~Gs~E~~R~d 67 (74)
T PF03537_consen 49 GKKVICYFS-IGSAEDWRPD 67 (74)
T ss_dssp T-EEEEEEE-SSEEETTSTT
T ss_pred CCEEEEEEe-CceecCCccc
Confidence 467888888 7777666654
No 41
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=22.36 E-value=1e+02 Score=19.31 Aligned_cols=19 Identities=11% Similarity=0.266 Sum_probs=7.4
Q ss_pred ccccHHHHHHHHHHHHHHh
Q 031237 3 QRMTTEFCKMLLCSLMMIT 21 (163)
Q Consensus 3 ~~m~~~~~~l~l~~~~~~~ 21 (163)
++.+..+..+++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (99)
T PF04956_consen 7 KKRRKFLLLLLALALLLLA 25 (99)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3333344444444433333
No 42
>PF05324 Sperm_Ag_HE2: Sperm antigen HE2; InterPro: IPR007988 This family consists of several variants of the human and chimpanzee (Pan troglodytes) sperm antigen proteins (HE2 and EP2 respectively). The EP2 gene codes for a family of androgen-dependent, epididymis-specific secretory proteins.The EP2 gene uses alternative promoters and differential splicing to produce a family of variant messages. The translated putative protein variants differ significantly from each other. Some of these putative proteins have similarity to beta-defensins, a family of antimicrobial peptides [].; GO: 0005576 extracellular region
Probab=22.18 E-value=82 Score=18.93 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=10.7
Q ss_pred cccccHHHHHHHHHHHHHHh
Q 031237 2 KQRMTTEFCKMLLCSLMMIT 21 (163)
Q Consensus 2 ~~~m~~~~~~l~l~~~~~~~ 21 (163)
||+.+..+..|+|..++...
T Consensus 1 kq~llP~~~sLLLvaLLfPG 20 (73)
T PF05324_consen 1 KQRLLPSFVSLLLVALLFPG 20 (73)
T ss_pred CcchhHHHHHHHHHHHHccC
Confidence 56666555555555554433
No 43
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=21.80 E-value=2.4e+02 Score=18.26 Aligned_cols=67 Identities=9% Similarity=-0.107 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHH-----HHHhhcccCCccHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHHHHhh
Q 031237 1 MKQRMTTEFCKMLLCSL-----MMITLGMANARHPDDWLHAHNGIRIQMGL-PALAWDDKLADYAKWYANERR 67 (163)
Q Consensus 1 ~~~~m~~~~~~l~l~~~-----~~~~~~~~~~~~~~~iL~~hN~~R~~~~m-~~L~Wd~~La~~Aq~~a~~~~ 67 (163)
|.|||++...++.-... .+.+..-..+-.++.+|+..-++|.+-.- .+..=|.+.++.-+.-..+++
T Consensus 1 ~~qrlfr~s~vlrs~vs~~~gv~a~a~nk~~DpIqqlFldKvREy~~ks~~Gklvds~pe~e~eLk~el~rla 73 (105)
T KOG4634|consen 1 MLQRLFRFSSVLRSAVSVHLGVTATAFNKELDPIQQLFLDKVREYKKKSPAGKLVDSDPEYEQELKEELFRLA 73 (105)
T ss_pred ChHHHHHHHHHHHHHHHHhhchhhhHHHhhhChHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56776655444332221 12222233345678889999999988443 344556666666555555444
No 44
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.01 E-value=1.4e+02 Score=25.23 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhCC
Q 031237 33 WLHAHNGIRIQMG 45 (163)
Q Consensus 33 iL~~hN~~R~~~~ 45 (163)
+-....++..+..
T Consensus 36 L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 36 LKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHhhc
Confidence 3444555555543
No 45
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=20.70 E-value=87 Score=17.08 Aligned_cols=13 Identities=38% Similarity=1.160 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 031237 7 TEFCKMLLCSLMM 19 (163)
Q Consensus 7 ~~~~~l~l~~~~~ 19 (163)
-.||+++.|+++.
T Consensus 33 vnfclilicllli 45 (52)
T PF04272_consen 33 VNFCLILICLLLI 45 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666543
No 46
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.57 E-value=2.2e+02 Score=17.46 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHhhCC
Q 031237 29 HPDDWLHAHNGIRIQMG 45 (163)
Q Consensus 29 ~~~~iL~~hN~~R~~~~ 45 (163)
.+.........+-.+.|
T Consensus 32 ~k~~~~k~i~~yL~e~g 48 (85)
T PF11337_consen 32 QKHKAEKAIDWYLQEQG 48 (85)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 45555555555544444
No 47
>COG5510 Predicted small secreted protein [Function unknown]
Probab=20.33 E-value=1.3e+02 Score=16.38 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 031237 8 EFCKMLL 14 (163)
Q Consensus 8 ~~~~l~l 14 (163)
.+.+++|
T Consensus 8 ~i~~vll 14 (44)
T COG5510 8 LIALVLL 14 (44)
T ss_pred HHHHHHH
Confidence 3333333
No 48
>PHA00684 hypothetical protein
Probab=20.18 E-value=34 Score=23.12 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=9.3
Q ss_pred cCeeeEEEEEec
Q 031237 130 TARVGCARVKCH 141 (163)
Q Consensus 130 t~~vGCa~~~c~ 141 (163)
.|+||||++-..
T Consensus 79 VT~IGCGiAG~~ 90 (128)
T PHA00684 79 VTRVGCGLAGHL 90 (128)
T ss_pred eeeeccccccCC
Confidence 578999998653
Done!