BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031238
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 199 bits (506), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/119 (78%), Positives = 106/119 (89%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 64 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 123
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVIM+ GNKSDL HLRAV ++ + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 124 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 199 bits (506), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/119 (78%), Positives = 106/119 (89%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 73 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVIM+ GNKSDL HLRAV ++ + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 133 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 196 bits (498), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/119 (78%), Positives = 105/119 (88%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 52 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 111
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVIM+ GNKSDL HLRAV ++ + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 112 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 196 bits (498), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/119 (78%), Positives = 105/119 (88%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 73 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVIM+ GNKSDL HLRAV ++ + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 133 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 193 bits (490), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 104/119 (87%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 49 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVI + GNKSDL HLRAV ++ + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 109 SNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 193 bits (490), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 104/119 (87%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 55 VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVI + GNKSDL HLRAV ++ + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 115 SNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 104/119 (87%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+GKT+KAQIWDTAGQERYR ITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHAD
Sbjct: 49 VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SNIVIM+ GNKSDL HLRAV ++ + AEK LSF+ETSAL++TNVE+AF+ ILTEIY
Sbjct: 109 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 100/118 (84%)
Query: 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN 64
K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK+ +F+N+ +WL+ELRD+ADSN
Sbjct: 54 NKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSN 113
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
IVI++ GNKSDL HLR + + D A+KE L+F+ETSALEATNVE AF +L EIY+
Sbjct: 114 IVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 92/114 (80%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+ V RWL+EL DHA++ IV+
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
M+ GNKSDL+ R V E+ AE GL FLETSAL++TNVE AF+T+L EI+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 92/114 (80%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+ V RWL+EL DHA++ IV+
Sbjct: 59 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
M+ GNKSDL+ R V E+ AE GL FLETSAL++TNVE AF+T+L EI+
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 93/120 (77%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+EGK +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYDI+K +++N WL ELR++AD
Sbjct: 57 IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD 116
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
N+ + + GNKSDL HLRAV E+ + A++ L F ETSAL + NV+KAF+ ++ IY
Sbjct: 117 DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 147 bits (370), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 91/121 (75%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
+ ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R TF+++ WL + R H
Sbjct: 52 ITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQH 111
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
++SN+VIM+ GNKSDL R V +E+G + A + GL F+ETSA A+NVE+AF EI
Sbjct: 112 SNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
Query: 121 Y 121
Y
Sbjct: 172 Y 172
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 90/120 (75%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
VE K +KAQIWDTAG ERYRAITSAYYRGAVGAL+VYDI+K +++N WL ELR++AD
Sbjct: 54 VENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD 113
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
N+ + + GNKSDL HLRAV ++ + A + + F ETSAL + NV+KAF+ ++ I+
Sbjct: 114 DNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQ 173
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 145 bits (367), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 88/119 (73%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++ WL + R H+
Sbjct: 65 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 124
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
SN+VIM+ GNKSDL R V E+G + A + GL F+ETSA A NVE+AF EIY
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 86/118 (72%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+E KTVK QIWDTAGQER+R ITS+YYRGA G ++VYD+T R +FDNV +W++E+ +A
Sbjct: 53 LENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAM 112
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL R VT ++G LA+ G+ F+ETSA A NVE+AF T+ EI
Sbjct: 113 ENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 85/118 (72%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT ++FDN+ W+R + +HA
Sbjct: 50 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 109
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ M+ GNK D+N R V++E G LA G+ F+ETSA NVE AF T+ +I
Sbjct: 110 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 85/118 (72%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT ++FDN+ W+R + +HA
Sbjct: 52 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 111
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ M+ GNK D+N R V++E G LA G+ F+ETSA NVE AF T+ +I
Sbjct: 112 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V GKTVK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++++ WL + R A
Sbjct: 69 VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS 128
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF----QTILT 118
NIV+++ GNK DL+ R VT + A++ L FLETSAL NVE+AF +TIL
Sbjct: 129 PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188
Query: 119 EI 120
+I
Sbjct: 189 KI 190
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 82/120 (68%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V G+ +K QIWDTAGQER+RA+T +YYRGA GAL+VYDIT+R T++++ WL + R+ +
Sbjct: 59 VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 118
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
N VI++ GNK+DL R VT E+ AE+ GL FLE SA NVE AF +IY
Sbjct: 119 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 60 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 120 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+ +A
Sbjct: 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS 112
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNKSDL + V A+ G+ FLETSA ATNVE+AF T+ EI
Sbjct: 113 ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GK VK QIWDTAGQER+R IT +YYR A GA+L YDITKR +F +V W+ ++R +A
Sbjct: 73 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 132
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120
SNIV ++ GNKSDL+ LR V+ + SLAE + L +ETSA +++NVE+AF + TE+
Sbjct: 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+ +A
Sbjct: 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS 112
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNKSDL + V A+ G+ FLETSA ATNVE+AF T+ EI
Sbjct: 113 ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 60 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 120 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 50 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 109
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 110 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 50 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 109
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 110 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 43 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 102
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 103 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 69 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 128
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 129 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 81/120 (67%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V G+ +K QIWDTAGQ R+RA+T +YYRGA GAL+VYDIT+R T++++ WL + R+ +
Sbjct: 74 VSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 133
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
N VI++ GNK+DL R VT E+ AE+ GL FLE SA NVE AF +IY
Sbjct: 134 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 83/118 (70%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 77 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 136
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ GNK DL + V A+ G+ FLETSA ATNVE++F T EI
Sbjct: 137 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ + WL + R A
Sbjct: 54 VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 113
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
NIVI++ GNK DL+ R VT + A++ L FLETSAL NVE+AF
Sbjct: 114 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V WL+E+ +A
Sbjct: 52 LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 111
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
S ++ ++ GNK DL R V + A+ + FLETSAL++TNVE AF T+ +I
Sbjct: 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 125 bits (315), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V WL+E+ +A
Sbjct: 52 LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 111
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
S ++ ++ GNK DL R V + A+ + FLETSAL++TNVE AF T+ +I
Sbjct: 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V WL+E+ +A
Sbjct: 65 LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 124
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
S ++ ++ GNK DL R V + A+ + FLETSAL++TNVE AF T+ +I
Sbjct: 125 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 79/111 (71%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ + WL + R A
Sbjct: 55 VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 114
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
NIVI++ GNK DL+ R VT + A++ L FLETSAL +VE+AF
Sbjct: 115 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 80/118 (67%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+G VK Q+WDTAGQER+R++T AYYR A LL+YD+T + +FDN+ WL E+ ++A
Sbjct: 55 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
++ +M+ GNK D H R V EDG LA++ GL F+ETSA NV+ AF I E+
Sbjct: 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 83/118 (70%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 52 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 111
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N+ ++ G K DL + V A+ G+ FLETSA ATNVE++F T+ EI
Sbjct: 112 ENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK VK QIWDTAGQER+R IT+AYYRGA+G +LVYDIT +TF N+ +W + + +HA+
Sbjct: 47 INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 106
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+++ GNKSD+ R VT + G +LA++ G+ F+E+SA NV + F T+
Sbjct: 107 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 78/111 (70%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V GK VK QIWDTAG ER+R++T +YYRGA GALLVYDIT R+T++ + WL + R A
Sbjct: 52 VGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 111
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
NIVI++ GNK DL+ R VT + A++ L FLETSAL +VE+AF
Sbjct: 112 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T +TF N+ +W + + +HA+
Sbjct: 64 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN 123
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+++ GNKSD+ R VT + G +LA++ G+ F+E+SA NV + F T+
Sbjct: 124 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T +TF N+ +W + + +HA+
Sbjct: 51 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN 110
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+++ GNKSD+ R VT + G +LA++ G+ F+E+SA NV + F T+
Sbjct: 111 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 80/116 (68%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
+ V TVK +IWDTAGQERY ++ YYRGA A++V+D+T + +F+ +W++EL+
Sbjct: 54 LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+ N+V+ +AGNKSDL R VT ED + A++ GL F+ETSA ATNV++ F I
Sbjct: 114 GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK VK QIWDTAGQER+R IT+AYYRGA G +LVYDIT +TF N+ +W + + +HA+
Sbjct: 47 INGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN 106
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+++ GNKSD R VT + G +LA++ G+ F+E+SA NV + F T+
Sbjct: 107 DEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK VK Q+WDTAGQER+R IT+AYYRGA G +LVYD+T +TF N+ +W + + +HA+
Sbjct: 47 INGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN 106
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+++ GNKSD R VT + G +LA++ G+ F+E+SA NV + F T+
Sbjct: 107 DEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 76/115 (66%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
K VK QIWDTAGQERYR IT+AYYRGA+G +L+YDIT ++F+ V W +++ ++ N
Sbjct: 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 66 VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ GNK D+ R V E G LAE+ G F E SA E +V +AF+ ++ I
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
K +K QIWDTAGQERYR IT+AYYRGA+G LL+YDI +++F V W +++ ++ N
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 66 VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ GNK DL R V EDG LA+ G F E SA E NV++ F+ ++ I
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
K IWDTAGQER+ ++ YYRG+ A++VYDITK+ +F + +W++EL++H NIV+
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 69 MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+AGNK DL+ +R V +D AE G +ETSA A N+E+ FQ I +I
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS- 63
G+ + Q+WDTAG ER+R++T+A++R A+G LL++D+T Q+F NV W+ +L+ HA S
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N I++ GNKSDL RAV EE+ LAEK G+ + ETSA TN+ A + +L I
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%)
Query: 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
K IWDTAGQER+RA+ YYRG+ A++VYDITK +TF + W+RELR H +IV+
Sbjct: 55 KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 69 MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+AGNK DL +R V E D A+ F+ETSA A N+ + F I
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 71/110 (64%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT TF W++EL+ A NIV
Sbjct: 53 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV 112
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
I +AGNK+DL RAV ++ + A+ L F+ETSA A NV + F I
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 71/110 (64%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT TF W++EL+ A NIV
Sbjct: 51 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV 110
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
I +AGNK+DL RAV ++ + A+ L F+ETSA A NV + F I
Sbjct: 111 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 55 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 114
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I ++
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 73/110 (66%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 76/115 (66%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
K +K QIWDTAGQERYR IT+AYYRGA+G +L+YDIT ++F+ V W +++ ++ N
Sbjct: 52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA 111
Query: 66 VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ GNK D+ R V+ E G LA+ G F E SA + NV++ F+ ++ I
Sbjct: 112 QVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 74/111 (66%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ G+ VK QIWDTAGQER+R+IT +YYR A +L YDIT ++F + WLRE+ +A
Sbjct: 70 INGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 129
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
+ ++ ++ GNK DL R V+++ +E + + +LETSA E+ NVEK F
Sbjct: 130 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK ++ QIWDTAGQER+ +ITSAYYR A G +LVYDITK++TFD++ +W++ + +A
Sbjct: 70 LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS 129
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120
+ +++ GNK D R +T + G A++ G+ F E SA + NV++ F ++ +I
Sbjct: 130 EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ G+ VK QIWDTAGQER+R ITS YYRG G ++VYD+T ++F NV RWL E+ + D
Sbjct: 53 INGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD 112
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
++ ++ GNK+D + V ED + A + G+ ETSA E NVE+ F I
Sbjct: 113 -DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 74/114 (64%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++TF W++EL+ A +IV
Sbjct: 56 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIV 115
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I +AGNK+DL + R V E+ + A+ L F+ETSA A NV F I ++
Sbjct: 116 IALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 74/114 (64%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 55 TVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 114
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
I ++GNK+DL + RAV ++ S A+ L F ETSA + NV + F I ++
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 70/110 (63%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAG ERY ++ YYRGA A++VYDIT TF W++EL+ A NIV
Sbjct: 53 TVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV 112
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
I +AGNK+DL RAV ++ + A+ L F+ETSA A NV + F I
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
K IWDTAG ER+RA+ YYRG+ A++VYDITK +TF + W+RELR H +IV+
Sbjct: 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 69 MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+AGNK DL +R V E D A+ F+ETSA A N+ + F I
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 72/110 (65%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAG ERY ++ YYRGA A++VYDIT ++F W++EL+ A NIV
Sbjct: 53 TVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 112
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
I ++GNK+DL + RAV ++ S A+ L F+ETSA + NV + F I
Sbjct: 113 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Query: 5 GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
GK K Q+WDTAGQER+R++T+A++R A+G LL++D+T +Q+F NV W+ +L+ +A
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 63 -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N I++ GNK+DL R V E LA+K G+ + ETSA NVEKA +T+L I
Sbjct: 139 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
K +K QIWDTAG ERYR IT+AYYRGA G +L YDIT ++F+ V W +++ ++ N
Sbjct: 55 KRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNA 114
Query: 66 VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ GNK D R V+ E G LA+ G F E SA + NV++ F+ ++ I
Sbjct: 115 QVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
Query: 5 GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
GK K Q+WDTAG ER+R++T+A++R A+G LL++D+T +Q+F NV W+ +L+ +A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 63 -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N I++ GNK+DL R V E LAEK G+ + ETSA NVEK+ +T+L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
Query: 5 GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
GK K Q+WDTAG ER+R++T+A++R A+G LL++D+T +Q+F NV W+ +L+ +A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 63 -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N I++ GNK+DL R V E LAEK G+ + ETSA NVEK+ +T+L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
TVK +IWDTAGQER+ ++ YYR A AL+VYD+TK Q+F W++EL + A +I+
Sbjct: 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII 110
Query: 67 IMMAGNKSDL---NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
I + GNK D R V E+G LAE++GL F ETSA NV F I
Sbjct: 111 IALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 78/116 (67%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +TV+ Q+WDTAGQER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 56 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE 115
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL+ R V+ E+G A++ + F+ETSA NV++ F+ +
Sbjct: 116 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 77/116 (66%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +TV+ Q+WDTAGQER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 44 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE 103
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL R +T E+G A++ + F+ETSA NV++ F+ +
Sbjct: 104 RGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 77/116 (66%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +T++ Q+WDTAGQER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 48 MYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 107
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL R V+ E+G A++ + F+ETSA NV++ F+ +
Sbjct: 108 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 77/116 (66%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +TV+ Q+WDTAGQER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 43 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 102
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL R V+ E+G A++ + F+ETSA NV++ F+ +
Sbjct: 103 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 5 GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
GK K Q+WDTAG ER+R++T+A++R A G LL +D+T +Q+F NV W +L+ +A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 63 -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N I++ GNK+DL R V E LAEK G+ + ETSA NVEK+ +T+L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 5 GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
GK K Q+WDTAG ER+R++T+A++R A G LL +D+T +Q+F NV W +L+ +A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 63 -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
N I++ GNK+DL R V E LAEK G+ + ETSA NVEK+ +T+L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 72/107 (67%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
V+ Q+WDTAGQER+R++ +Y R + A++VYDIT RQ+F+N +W++++ + +++I
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
+ GNK+DL LR VT E+G A++ F ETSA N++ F+
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 76/116 (65%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +T++ Q+WDTAG ER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 55 MYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 114
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL R V+ E+G A++ + F+ETSA NV++ F+ +
Sbjct: 115 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 76/116 (65%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +TV+ Q+WDTAG ER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 58 MYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 117
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL R V+ E+G A++ + F+ETSA NV++ F+ +
Sbjct: 118 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 76/116 (65%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
M +E +TV+ Q+WDTAG ER+R++ +Y R + A++VYDIT +F +W+ ++R
Sbjct: 48 MYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 107
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
S+++IM+ GNK+DL R V+ E+G A++ + F+ETSA NV++ F+ +
Sbjct: 108 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 60/74 (81%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A
Sbjct: 42 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 101
Query: 63 SNIVIMMAGNKSDL 76
N+ ++ GNK DL
Sbjct: 102 ENVNKLLVGNKCDL 115
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+G K IWDTAGQER+R +T +YYRGA G +LVYD+T+R TF + WL EL +
Sbjct: 59 VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 118
Query: 63 SN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
N IV + GNK D + R V +G A K F+E SA V+ AF+ ++ +I
Sbjct: 119 RNDIVNXLVGNKIDKEN-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKII 177
Query: 122 H 122
Sbjct: 178 Q 178
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK V IWDTAGQER+ A+ YYR + GA+LVYDIT +F V W++ELR
Sbjct: 64 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 123
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
+ I + + GNK DL R V+ ++ S AE G TSA + +E+ F
Sbjct: 124 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK V IWDTAGQER+ A+ YYR + GA+LVYDIT +F V W++ELR
Sbjct: 50 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
+ I + + GNK DL R V+ ++ S AE G TSA + +E+ F
Sbjct: 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
+ GK V IWDTAGQER+ A+ YYR + GA+LVYDIT +F V W++ELR
Sbjct: 50 IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
+ I + + GNK DL R V+ ++ S AE G TSA + +E+ F
Sbjct: 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
+IV+G+ Q+WDTAGQER+R+I +Y+R A G LL+YD+T ++F N+ W+ + D
Sbjct: 70 LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA 129
Query: 61 ADSNIVIMMAGNKSDLNHL------RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
A + IM+ GNK+D+ + V G LA G F ETSA + +N+ +A
Sbjct: 130 AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189
Query: 115 TILTEI 120
+ E+
Sbjct: 190 HLAREV 195
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+ + V QIWDTAGQER++++ A+YRGA +LV+D+T TF + W E
Sbjct: 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61 ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
A N ++ GNK DL + + T+ K + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+ + V QIWDTAGQER++++ A+YRGA +LV+D+T TF + W E
Sbjct: 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61 ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
A N ++ GNK DL + + T+ K + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+ + V QIWDTAGQER++++ A+YRGA +LV+D+T TF + W E
Sbjct: 50 VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61 ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
A N ++ GNK D + + T+ K + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+ + V QIWDTAG ER++++ A+YRGA +LV+D+T TF + W E
Sbjct: 50 VMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61 ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
A N ++ GNK DL + + T+ K + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
+K IWDTAGQERY +I YYRGA A++V+DI+ T D W+ +L+ SN +I
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
++ NK D N + V + A+ L F++TSA TN++ F + EIY
Sbjct: 151 ILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+G+ V QIWDTAGQER++++ + +YRGA LL + + RQ+F+N+ W +E +AD
Sbjct: 51 VDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD 110
Query: 63 ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
+ ++ GNK D + TEE E +LETSA + TNV AF+ +
Sbjct: 111 VKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVR 170
Query: 119 EI 120
++
Sbjct: 171 QV 172
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+G V QIWDTAGQER+R++ + +YRG+ LL + + Q+F N+ W +E +AD
Sbjct: 55 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 114
Query: 63 ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
+ ++ GNK+D+ + TEE + + ETSA ++TNV AF+ +
Sbjct: 115 VKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVR 174
Query: 119 EI 120
I
Sbjct: 175 RI 176
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+G V QIWDTAGQER+R++ + +YRG+ LL + + Q+F N+ W +E +AD
Sbjct: 53 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 112
Query: 63 ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
+ ++ GNK D++ + TEE + + ETSA +ATNV AF+
Sbjct: 113 VKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+G V QIWDTAGQER+R++ + +YRG+ LL + + Q+F N+ W +E +AD
Sbjct: 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 110
Query: 63 ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
+ ++ GNK D++ + TEE + + ETSA +ATNV AF+
Sbjct: 111 VKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDH 60
+++ + + I DTAGQE + A+ Y R G LLV+ +T R +F+ + ++ R+ LR
Sbjct: 47 VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+++ GNK+DL+H R VT+E+G LA + ++++E SA NV++AF ++ I
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAGQE Y AI Y+R G L V+ IT+ ++F + + LR
Sbjct: 55 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114
Query: 60 HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
D N+ ++ GNKSDL R V+ E+ + AE+ ++++ETSA NV+K F ++ E
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174
Query: 120 I 120
I
Sbjct: 175 I 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAGQE Y AI Y+R G L V+ IT+ ++F + + LR
Sbjct: 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118
Query: 60 HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
D N+ ++ GNKSDL R V+ E+ + AE+ ++++ETSA NV+K F ++ E
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178
Query: 120 I 120
I
Sbjct: 179 I 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAGQE Y AI Y+R G L V+ IT+ ++F + + LR
Sbjct: 47 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 60 HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
D N+ ++ GNKSDL R V+ E+ + AE+ ++++ETSA NV+K F ++ E
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 120 I 120
I
Sbjct: 167 I 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAGQE Y AI Y+R G L V+ IT+ ++F + + LR
Sbjct: 45 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 104
Query: 60 HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
D N+ ++ GNKSDL R V+ E+ + A++ ++++ETSA NV+K F ++ E
Sbjct: 105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164
Query: 120 I 120
I
Sbjct: 165 I 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN- 64
K Q+WDTAGQER++++ A+YRGA +LVYD+T +F+N+ W E HA+ N
Sbjct: 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
Query: 65 ---IVIMMAGNKSDLNHLRA-VTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTI 116
++ GNK D + V+E+ LA+ G + TSA A NV+ AF+ I
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAG E Y AI Y+R G LLV+ IT+ ++F + + LR
Sbjct: 48 VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 107
Query: 60 HADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
A+ + I +++ GNKSDL R V E+ S AE+ G+ ++ETSA NV+K F ++
Sbjct: 108 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
Query: 119 EI 120
EI
Sbjct: 168 EI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAG E Y AI Y+R G LLV+ IT+ ++F + + LR
Sbjct: 44 VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 103
Query: 60 HADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
A+ + I +++ GNKSDL R V E+ S AE+ G+ ++ETSA NV+K F ++
Sbjct: 104 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
Query: 119 EI 120
EI
Sbjct: 164 EI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
++++G+ V+ I DTAG E Y AI Y+R G L V+ IT+ ++F + + LR
Sbjct: 47 VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 60 HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
D N+ ++ GNKSDL R V+ E+ + AE+ ++++ETSA NV+K F ++ E
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 120 I 120
I
Sbjct: 167 I 167
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F ++ + +++
Sbjct: 62 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V + H LA+ G+ F+ETSA VE AF T++ E
Sbjct: 122 KDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180
Query: 120 I 120
I
Sbjct: 181 I 181
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNKSDL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNKSDL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 3 VEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
++G+ +K Q+WDTAGQER+R ++ YYR + VYD+T +F ++ W+ E + H
Sbjct: 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 62 DSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATN---VEKAFQTI 116
+N I ++ GNK DL V + A+ + ETSA + VE F T+
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ + +++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61 ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS ++ +++ GNKSDL R V + LA G+ F+ETSA V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
I
Sbjct: 164 I 164
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ + +++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61 ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS ++ +++ GNKSDL R V + LA G+ F+ETSA V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
I
Sbjct: 164 I 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ + +++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61 ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS ++ +++ GNKSDL R V + LA G+ F+ETSA V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
I
Sbjct: 164 I 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ + +++
Sbjct: 45 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61 ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS ++ +++ GNK DL R V + LA G+ F+ETSA V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
I
Sbjct: 164 I 164
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 50 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 110 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 168
Query: 120 I 120
I
Sbjct: 169 I 169
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 51 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 111 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 169
Query: 120 I 120
I
Sbjct: 170 I 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 120 I 120
I
Sbjct: 168 I 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 49 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 120 I 120
I
Sbjct: 168 I 168
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLAG-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V + V+ +WDTAGQE + AIT AYYRGA +LV+ T R++F+ + W RE
Sbjct: 49 VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEV 107
Query: 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
+I + NK DL + E+ LA++ L F TS E NV + F+ +
Sbjct: 108 GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 3 VEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
++G+ +K Q+WDTAGQER+R ++ YYR + VYD T +F ++ W+ E + H
Sbjct: 73 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL 132
Query: 62 DSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATN---VEKAFQTI 116
+N I ++ GNK DL V + A+ ETSA + VE F T+
Sbjct: 133 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GN+ DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DT GQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V IWDTAGQ+ Y + +Y A LL +D+T +FDN+ RW E+ +H
Sbjct: 77 VKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHF 135
Query: 62 DSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
+ I++ G K+DL N L VT G +A G +++LE SA N
Sbjct: 136 CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195
Query: 109 VEKAFQ 114
V FQ
Sbjct: 196 VHAVFQ 201
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
Sbjct: 163 F 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG+E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DT GQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS 63
+G +K +WDTAGQE+ + YY GA GA+L +D+T R T N+ RW++E + +
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN 116
Query: 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ NK D+ + + ++++ + + + + E SA A N F
Sbjct: 117 EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSN 64
V QIWD GQ + Y GA G LLVYDIT Q+F+N+ W ++++ + +++
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
++ + GNK DL H+R + E ++ G S SA +V FQ + EI
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
+ DTAGQE + A+ Y R G L+VY +T + +F++V R+ + LR + +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 71 GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
NK DL HLR VT + G +A K + ++ETSA + NV+K F ++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+ I DTAGQE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
+ DTAGQE + A+ Y R G L+VY +T + +F++V R+ + LR + +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 71 GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
NK DL HLR VT + G +A K + ++ETSA + NV+K F ++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
+ DTAGQE + A+ Y R G L+VY +T + +F++V R+ + LR + +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 71 GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
NK DL HLR VT + G +A K + ++ETSA + NV+K F ++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
+ DTAGQE + A+ Y R G L+VY +T + +F++V R+ + LR + +++
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 71 GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
NK DL HLR VT + G +A K + ++ETSA + NV+K F ++ I
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ + +++
Sbjct: 62 VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 61 ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS ++ +++ GNK DL R V + LA G+ F+ETSA V+ AF T++ E
Sbjct: 122 KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 180
Query: 120 I 120
I
Sbjct: 181 I 181
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTA QE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTA QE Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 49 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 120 I 120
I
Sbjct: 168 I 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAG E Y A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++++G+T I DTAGQE A+ Y R G L V+ I ++F+++ ++ +++
Sbjct: 44 VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61 ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
DS+ V M + GNK DL R V LA G+ ++ETSA VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
I
Sbjct: 163 I 163
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+G+ V +WDTAGQE Y + YRGA +L + + + +++NVL +W+ ELR A
Sbjct: 52 VDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA 111
Query: 62 DSNIVIMMAGNKSDL--------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKA 112
N+ I++ G K DL +H +T G L ++ G +++E S+ NV+
Sbjct: 112 -PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
Query: 113 FQTIL 117
F T +
Sbjct: 171 FDTAI 175
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE+Y + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
V+ + +I DTAG E++ A+ Y + G LVY IT + TF N L+ LRE LR
Sbjct: 48 VDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 106
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
++ +++ GNK DL R V +E G +LA + +FLE+SA NV + F ++ +
Sbjct: 107 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
Query: 120 I 120
I
Sbjct: 167 I 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
V+ + +I DTAG E++ A+ Y + G LVY IT + TF N L+ LRE LR
Sbjct: 46 VDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 104
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
++ +++ GNK DL R V +E G +LA + +FLE+SA NV + F ++ +
Sbjct: 105 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 120 I 120
I
Sbjct: 165 I 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
V+G + I DTAGQE + A+ Y R G LLV+ I RQ+F+ V + + LR
Sbjct: 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 62 DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+ +++ GNK+DL R V + + +++ E SA NV++AF+ ++ +
Sbjct: 112 RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L + NI
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L + NI
Sbjct: 51 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 109
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 110 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 154
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L + NI I
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPI 117
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 118 VLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 121
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 122 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 121
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 122 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
V+ + +I DTAG E++ A+ Y + G LVY IT + TF N L+ LRE LR
Sbjct: 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 104
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
++ +++ GNK DL R V +E G +LA + +FLE+SA NV + F ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 120 I 120
I
Sbjct: 165 I 165
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
V+ + +I DTAG E++ A+ Y + G LVY IT + TF N L+ LRE LR
Sbjct: 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 104
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
++ +++ GNK DL R V +E G +LA + +FLE+SA NV + F ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 120 I 120
I
Sbjct: 165 I 165
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAGQE++ + YY A A++ +D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V G+ Q+ DTAGQ+ Y Y G +LVY +T ++F+ + +L D
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 63 S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
I IM+ GNK DL+ R ++ E+G +LAE +FLE+SA E F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V G+ Q+ DTAGQ+ Y Y G +LVY +T ++F+ + +L D
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 63 S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
I IM+ GNK DL+ R ++ E+G +LAE +FLE+SA E F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V G+ Q+ DTAGQ+ Y Y G +LVY +T ++F+ + +L D
Sbjct: 44 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 103
Query: 63 S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
I IM+ GNK DL+ R ++ E+G +LAE +FLE+SA E F+ I+ E
Sbjct: 104 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V G+ Q+ DTAGQ+ Y Y G +LVY +T ++F+ + +L D
Sbjct: 47 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Query: 63 S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
I IM+ GNK DL+ R ++ E+G +LAE +FLE+SA E F+ I+ E
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 14 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD-HADSNIVIMMAGN 72
DTAGQ+ Y + ++ G G +LVY +T +F + ++L + H + + +++ GN
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 73 KSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
K+DL+ R V +G LAE G +F+E+SA E + F ++ EI
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
+K +WDTAG E++ + YY A A++++D+T R T+ NV W R+L + NI I
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 111
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
++ GNK D+ + + + K+ L + + SA N EK F
Sbjct: 112 VLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
+K +WDTAG E++ + YY A A++++D+T R T+ NV W R+L + NI I
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 112
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
++ GNK D+ + + + K+ L + + SA N EK F
Sbjct: 113 VLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
+K +WDTAG E++ + YY A A++++D+T R T+ NV W R+L + NI I
Sbjct: 61 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 119
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
++ GNK D+ + + + K+ L + + SA N EK F
Sbjct: 120 VLCGNKVDVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAG E++ + YY A A++++D+T R T+ NV W R+L + NI
Sbjct: 54 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 112
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 113 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAG E++ + YY A A++++D+T R T+ NV W R+L + NI
Sbjct: 60 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 118
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 119 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-- 60
++ + V +I DTAGQE + R G +LVYDIT R +F+ VL L+ + D
Sbjct: 71 IDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIK 128
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTE 119
N+ +++ GNK+DL+H R V+ E+G LA + +F E SA N+ + F + E
Sbjct: 129 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188
Query: 120 I 120
+
Sbjct: 189 V 189
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+G TV +WDTAGQE Y + YRGA LL + + + +++N+ +WL EL+
Sbjct: 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKH 106
Query: 60 HADSNIVIMMAGNKSDL--------NHLRA--VTEEDGHSLAEKEG-LSFLETSALEATN 108
+A I I++ G K DL +H A +T G L + G + +LE S+ N
Sbjct: 107 YA-PGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
Query: 109 VEKAFQTIL 117
V+ F T +
Sbjct: 166 VKAVFDTAI 174
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
+K +WDTAG E++ + YY A A++++D+T R T+ NV W R+L NI
Sbjct: 58 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
I++ GNK D+ + + K+ L + + SA N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
++V+G TV +WDTAGQE Y + YRGA +L + + + +++NV +W+ ELR
Sbjct: 47 VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 106
Query: 60 HADSNIVIMMAGNKSDL--------NHLRAV--TEEDGHSLAEKEGLS-FLETSALEATN 108
+A + I++ G K DL +H AV T G L + G ++E S+ N
Sbjct: 107 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
Query: 109 VEKAF 113
V+ F
Sbjct: 166 VKAVF 170
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 11 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIM 68
+I DTAG E++ ++ Y + G +LVY + +Q+F ++ + +R+ +R + ++
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVI 112
Query: 69 MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
+ GNK DL R V+ +G +LAE+ G F+ETSA T V++ F I+ ++
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y +L+ + + +F+NV +W E+R
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164
Query: 107 TNVEKAF 113
++ F
Sbjct: 165 RGLKTVF 171
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y +L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y +L+ + + +F+NV +W E+R
Sbjct: 48 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 107
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 108 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 166
Query: 107 TNVEKAF 113
++ F
Sbjct: 167 RGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y +L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V G TV +WDTAGQE Y + YRGA +L + + + +++NV +W+ EL+
Sbjct: 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108
Query: 60 HADSNIVIMMAGNKSDL--------NHLRAV--TEEDGHSLAEKEGL-SFLETSALEATN 108
+A + I++ G K DL +H AV T G L + G +++E S+ N
Sbjct: 109 YA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
Query: 109 VEKAF 113
V+ F
Sbjct: 168 VKGVF 172
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+G+ V+ Q+ DTAGQ+ + + Y LL + + +F NV +W+ E+R H
Sbjct: 63 VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122
Query: 62 DSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEK-EGLSFLETSALEATN 108
+I++ G +SDL + V EE LAE+ + S++E SAL N
Sbjct: 123 PKAPIILV-GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
Query: 109 VEKAF 113
+++ F
Sbjct: 182 LKEVF 186
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 51 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 110
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 111 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 169
Query: 107 TNVEKAF 113
++ F
Sbjct: 170 RGLKTVF 176
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 46 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 104
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 109 VEKAFQ 114
V + F+
Sbjct: 165 VREVFE 170
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 52 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 110
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 111 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 170
Query: 109 VEKAFQ 114
V + F+
Sbjct: 171 VREVFE 176
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 48 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
V + F+
Sbjct: 167 VREVFE 172
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 46 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 104
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 109 VEKAFQ 114
V + F+
Sbjct: 165 VREVFE 170
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 63 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 122
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 123 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 181
Query: 107 TNVEKAF 113
++ F
Sbjct: 182 RGLKTVF 188
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 107 TNVEKAF 113
++ F
Sbjct: 190 RGLKTVF 196
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 71 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 107 TNVEKAF 113
++ F
Sbjct: 190 RGLKTVF 196
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 49 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 107
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 109 VEKAFQ 114
V + F+
Sbjct: 168 VREVFE 173
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 50 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 108
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 109 VEKAFQ 114
V + F+
Sbjct: 169 VREVFE 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 49 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 107
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 109 VEKAFQ 114
V + F+
Sbjct: 168 VREVFE 173
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 48 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
V + F+
Sbjct: 167 VREVFE 172
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 48 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
V + F+
Sbjct: 167 VREVFE 172
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 48 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
V + F+
Sbjct: 167 VREVFE 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 50 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 108
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 109 VEKAFQ 114
V + F+
Sbjct: 169 VREVFE 174
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 54 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 113
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 114 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 172
Query: 107 TNVEKAF 113
++ F
Sbjct: 173 RGLKTVF 179
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 51 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 109
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 109 VEKAFQ 114
V + F+
Sbjct: 170 VREVFE 175
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + + + +N+ +W+ E++ H
Sbjct: 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HF 126
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
N+ I++ NK DL H+R V +DG ++A + + +LE SA
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 109 VEKAFQT 115
V + F+T
Sbjct: 187 VREVFET 193
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 50 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 108
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 109 VEKAFQ 114
V + F+
Sbjct: 169 VREVFE 174
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 126
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + +LE SA
Sbjct: 127 XPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 109 VEKAFQ 114
V + F+
Sbjct: 187 VREVFE 192
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 48 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62 DSNIVIMMAGNKSDLN---HLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + +LE SA
Sbjct: 107 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 166
Query: 109 VEKAFQ 114
V + F+
Sbjct: 167 VREVFE 172
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y + Y L+ + I + +N+ +W E++ H
Sbjct: 68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 126
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + +LE SA
Sbjct: 127 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 109 VEKAFQ 114
V + F+
Sbjct: 187 VREVFE 192
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+ K V +WDTAGQE Y + Y L+ + + +++NV +W E+R
Sbjct: 44 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H S +I++ G K DL L +T G +LA E + + +LE SAL
Sbjct: 104 HCPSTPIILV-GTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H + I++ G K DL L +T G ++A + G + +LE SAL
Sbjct: 104 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+ K V +WDTAGQE Y + Y L+ + + +++NV +W E+R
Sbjct: 50 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 109
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H S +I++ G K DL L +T G +LA E + + +LE SAL
Sbjct: 110 HCPSTPIILV-GTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 168
Query: 107 TNVEKAF 113
++ F
Sbjct: 169 RGLKTVF 175
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F+NV +W E+R
Sbjct: 44 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKTVF 169
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 45 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H + I++ G K DL L +T G ++A + G + +LE SAL
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 107 TNVEKAF 113
++ F
Sbjct: 164 RGLKTVF 170
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAGQE Y + Y L+ + + +F+NV +W E+R
Sbjct: 45 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H + I++ G K DL L +T G ++A + G + +LE SAL
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 107 TNVEKAF 113
++ F
Sbjct: 164 RGLKTVF 170
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+ K V +WDTAGQE Y + Y L+ + + +++NV +W E+R
Sbjct: 51 VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 110
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H S +I++ G K DL L +T G +LA E + + +LE SAL
Sbjct: 111 HCPSTPIILV-GTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 169
Query: 107 TNVEKAF 113
++ F
Sbjct: 170 RGLKTVF 176
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F+NV +W E+R
Sbjct: 47 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 106
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 107 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 165
Query: 107 TNVEKAF 113
++ F
Sbjct: 166 RGLKTVF 172
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAG E Y + Y L+ + I + +N+ +W E++ H
Sbjct: 51 VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 109
Query: 62 DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL H R V E+G +A + G ++E SA
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 109 VEKAFQ 114
V + F+
Sbjct: 170 VREVFE 175
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F+NV +W E+R
Sbjct: 71 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 107 TNVEKAF 113
++ F
Sbjct: 190 RGLKTVF 196
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 34/146 (23%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---------------- 44
++V+GK V +WDTAGQE Y + Y VG DIT R
Sbjct: 46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSL 105
Query: 45 ---QTFDNV-LRWLRELRDHADSNIVIMMAGNKSDL------------NHLRAVTEEDGH 88
+F+NV +W E+R H N I++ G K DL L +T G
Sbjct: 106 VSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 89 SLAEKEG-LSFLETSALEATNVEKAF 113
++A++ G + +LE SAL ++ F
Sbjct: 165 AMAKEIGAVKYLECSALTQRGLKTVF 190
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 11 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVI 67
QI DT G ++ A+ +LVY IT RQ+ + + + E++ +S I I
Sbjct: 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPI 112
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
M+ GNK D + R V + +LA +F+ETSA NV++ FQ +L
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 15/120 (12%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
++ + ++ +WDT+G Y + Y + L+ +DI++ +T D+VL +W E+++
Sbjct: 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 130
Query: 62 DSNIVIMMAGNKSDL-----------NHLR-AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N +++ G KSDL NH + V+ + G ++A++ G +++E SAL++ N
Sbjct: 131 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 11 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMM 69
+WDTAGQE Y + Y + LL + + R +FDN+ +W E++ + D+ +++
Sbjct: 74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 133
Query: 70 AGNKSDLNHLRA--VTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121
G K DL + VT+++G L +K G ++++E S++ + + F+ + I+
Sbjct: 134 -GLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 15/120 (12%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
++ + ++ +WDT+G Y + Y + L+ +DI++ +T D+VL +W E+++
Sbjct: 66 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 125
Query: 62 DSNIVIMMAGNKSDL-----------NHLR-AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N +++ G KSDL NH + V+ + G ++A++ G +++E SAL++ N
Sbjct: 126 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 15/120 (12%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
++ + ++ +WDT+G Y + Y + L+ +DI++ +T D+VL +W E+++
Sbjct: 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 109
Query: 62 DSNIVIMMAGNKSDL-----------NHLR-AVTEEDGHSLAEKEG-LSFLETSALEATN 108
N +++ G KSDL NH + V+ + G ++A++ G +++E SAL++ N
Sbjct: 110 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+GK V+ +WDTAGQE Y Y L+ + I + +N+ +W E++ H
Sbjct: 48 VDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62 DSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ I++ GNK DL + V +G +A + G ++E SA
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
V + F+
Sbjct: 167 VREVFE 172
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 11 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMM 69
+WDTAGQE Y + Y + LL + + R +FDN+ +W E++ + D+ +++
Sbjct: 73 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 132
Query: 70 AGNKSDLNHLRA--VTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121
G K DL + VT+++G L +K G ++++E S++ + + F+ + I+
Sbjct: 133 -GLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F +V +W E+R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 107 TNVEKAF 113
++ F
Sbjct: 315 RGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F +V +W E+R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 107 TNVEKAF 113
++ F
Sbjct: 315 RGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
++V+GK V +WDTAG E Y + Y L+ + + +F +V +W E+R
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
H N I++ G K DL L +T G ++A++ G + +LE SAL
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 107 TNVEKAF 113
++ F
Sbjct: 315 RGLKTVF 321
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD 62
E + V+ +WDT+G Y + Y + LL +DI++ +T D+ L +W E+ D+
Sbjct: 54 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 113
Query: 63 SNIVIMMAGNKSD----------LNHLR--AVTEEDGHSLAEKEGLS-FLETSALEATNV 109
S V+++ G K+D L+H + ++ E G ++A++ G +LE SA +
Sbjct: 114 STRVLLI-GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS--- 169
Query: 110 EKAFQTIL 117
EK+ +I
Sbjct: 170 EKSIHSIF 177
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD 62
E + V+ +WDT+G Y + Y + LL +DI++ +T D+ L +W E+ D+
Sbjct: 55 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 114
Query: 63 SNIVIMMAGNKSD----------LNHLR--AVTEEDGHSLAEKEGLS-FLETSALEATNV 109
S V+++ G K+D L+H + ++ E G ++A++ G +LE SA +
Sbjct: 115 STRVLLI-GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS--- 170
Query: 110 EKAFQTIL 117
EK+ +I
Sbjct: 171 EKSIHSIF 178
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V+G+ V+ +WDTAGQE Y + Y + L+ + I + +NV +W+ E+ H
Sbjct: 53 VDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HF 111
Query: 62 DSNIVIMMAGNKSDL-------NHLR-----AVTEEDGHSLAEKEGLS-FLETSALEATN 108
+ I++ G K DL LR VT ++G S+A++ G + + E SA
Sbjct: 112 CQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYG 171
Query: 109 VEKAFQ 114
V + F+
Sbjct: 172 VREVFE 177
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD 62
E + V+ +WDT+G Y + Y + LL +DI++ +T D+ L +W E+ D+
Sbjct: 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 130
Query: 63 SNIVIMMAGNKSD----------LNHLR--AVTEEDGHSLAEKEGLS-FLETSALEATNV 109
S V+++ G K+D L+H + ++ E G ++A++ G +LE SA +
Sbjct: 131 STRVLLI-GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS--- 186
Query: 110 EKAFQTIL 117
EK+ +I
Sbjct: 187 EKSIHSIF 194
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 11 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVI 67
QI DT G ++ A+ +LV+ +T +Q+ + + + + +++ + +I +
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPV 117
Query: 68 MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
M+ GNK D R V + ++A++ +F+ETSA NV++ FQ +LT
Sbjct: 118 MLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 36 LLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE 94
L+VY IT R +F+ +LR + +I I++ GNKSDL R V+ +G + A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 95 GLSFLETSALEATNVEKAFQTILTEI 120
F+ETSA NV++ F+ I+ ++
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 36 LLVYDITKRQTFDNV--LR-WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
L+VY IT R +F+ LR LR R D I I++ GNKSDL R V+ +G + A
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRCREVSVSEGRACAV 173
Query: 93 KEGLSFLETSALEATNVEKAFQTILTEI 120
F+ETSA NV++ F+ I+ ++
Sbjct: 174 VFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADS 63
+V+ + DTAG + Y+ S Y+ G A+LV+D++ ++F++ W L+ R +
Sbjct: 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131
Query: 64 NIVIMMAGNKSDLNHLRAVTEED-GHSLAEKEGLSFLETSA-LEATNVEKAFQTILTEIY 121
+ ++ NK+DL R D A L F + SA + + F +I T Y
Sbjct: 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
Query: 122 H 122
Sbjct: 192 R 192
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD GQ++ R + YY G G + V D R D + L R + D +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 102 AIILIFANKQDLPD-----AXKPHEIQEKLGLT 129
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD GQ++ R + YY G G + V D R D + L R + D +
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 424 AIILIFANKQDLPDAMKP-----HEIQEKLGLT 451
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+G+ ++D Q+ R + ++VY +T + +F+ +LR
Sbjct: 47 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 61 ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
++ + I++ GNKSDL R V+ ++G + A F+ETSA NV+ F+ ++ +
Sbjct: 107 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 120 I 120
I
Sbjct: 167 I 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+G+ ++D Q+ R + ++VY +T + +F+ +LR
Sbjct: 42 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101
Query: 61 ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
++ + I++ GNKSDL R V+ ++G + A F+ETSA NV+ F+ ++ +
Sbjct: 102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161
Query: 120 I 120
I
Sbjct: 162 I 162
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 36 LLVYDITKRQTFDNV--LR-WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
L+VY IT R +F+ LR LR R D I I++ GNKSDL R V+ +G + A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 93 KEGLSFLETSALEATNVEKAFQTILTEI 120
F+ETSA NV++ F+ I+ ++
Sbjct: 143 VFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 36 LLVYDITKRQTFDNV--LR-WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
L+VY IT R +F+ LR LR R D I I++ GNKSDL R V+ +G + A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 93 KEGLSFLETSALEATNVEKAFQTILTEI 120
F+ETSA NV++ F+ I+ ++
Sbjct: 143 VFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+G+ ++D Q+ R + ++VY +T + +F+ +LR
Sbjct: 47 IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 61 ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
++ + I++ GNKSDL R V+ ++G + A F+ETSA NV+ F+ ++ +
Sbjct: 107 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 120 I 120
I
Sbjct: 167 I 167
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD GQ++ R + YY G G + V D R D + L R + D +
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 114 AIILIFANKQDLPDAMK-----PHEIQEKLGLT 141
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD GQ++ R + YY G G + V D R D + L R + D +
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 115 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 142
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
V GK ++DTAGQE Y + Y L+ + + +F NV W+ EL+++A
Sbjct: 61 VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 120
Query: 62 DSNIVIMMAGNKSD----------LNHL--RAVTEEDGHSLAEKEG-LSFLETSALEATN 108
N+ ++ G + D LN + + + E G LA++ G ++E SAL
Sbjct: 121 -PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 179
Query: 109 VEKAFQTILTEI 120
++ F + I
Sbjct: 180 LKTVFDEAIIAI 191
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD GQ++ R + YY G G + V D R D + L R + D +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 102 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 129
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD GQ++ R + YY G G + V D R D + L R + D +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 102 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 129
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 36 LLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
L+V+ +T R++F V L LR R H D + +++ GNKSDL R V+ E+G LA
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAG 158
Query: 93 KEGLSFLETSALEATNVEKAFQTILTEI 120
+ETSA N + F+ + +I
Sbjct: 159 TLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 30 RGAVGALLVYDITKRQTFDNVLRWLRELR-DHADSNIVIMMAGNKSDLNHLRAVTEEDGH 88
+G ++VY I R +F++ +LR H ++ I++ GNK+DL R V+ E+G
Sbjct: 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135
Query: 89 SLAEKEGLSFLETSALEATNVEKAFQ 114
+ A F+ETSA NV + F+
Sbjct: 136 ACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 36 LLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
L+V+ +T R++F V L LR R H D + +++ GNKSDL R V+ E+G LA
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAG 137
Query: 93 KEGLSFLETSALEATNVEKAFQTILTEI 120
+ETSA N + F+ + +I
Sbjct: 138 TLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 36 LLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
L+V+ +T R++F V L LR R H D + +++ GNKSDL R V+ E+G LA
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAG 147
Query: 93 KEGLSFLETSALEATNVEKAFQTILTEI 120
+ETSA N + F+ + +I
Sbjct: 148 TLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD G ++ R + YY G G + V D R D + L R + D +
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 115 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 142
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD G ++ R + YY G G + V D R D + L R + D +
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 104 AIILIFANKQDLPDAMK-----PHEIQEKLGLT 131
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
K VK +WD G ++ R + YY G G + V D R D + L R + D +
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104
Query: 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
+I++ NK DL H + EK GL+
Sbjct: 105 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 132
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV------LRWLRE 56
VE K + +WD GQ+R R + Y++ G + V D R+ V + + E
Sbjct: 56 VEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDE 115
Query: 57 LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99
LRD V+++ NK DL + A++E + +K GL L
Sbjct: 116 LRDA-----VLLLFANKQDLPNAMAISE-----MTDKLGLQSL 148
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 46 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 107 TNVEKAF 113
++ F
Sbjct: 165 KGLKNVF 171
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 45 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 104
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 105 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 163
Query: 107 TNVEKAF 113
++ F
Sbjct: 164 KGLKNVF 170
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 47 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 107 TNVEKAF 113
++ F
Sbjct: 166 KGLKNVF 172
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 54 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 113
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 114 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 172
Query: 107 TNVEKAF 113
++ F
Sbjct: 173 KGLKNVF 179
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 48 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 107
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 108 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 166
Query: 107 TNVEKAF 113
++ F
Sbjct: 167 KGLKNVF 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 47 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 107 TNVEKAF 113
++ F
Sbjct: 166 KGLKNVF 172
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 51 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 107 TNVEKAF 113
++ F
Sbjct: 170 KGLKNVF 176
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 46 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 107 TNVEKAF 113
++ F
Sbjct: 165 KGLKNVF 171
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 51 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 107 TNVEKAF 113
++ F
Sbjct: 170 KGLKNVF 176
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKNVF 169
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 RGLKNVF 169
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMA 70
++DTAGQE Y + Y L+ + + +F+NV +W+ E+ H ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 71 GNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEATNVEKAF 113
G + DL N + +T E LA + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV 66
V +IWD GQ R+R++ Y RG + + D R+ + L L D I
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 67 IMMAGNKSDL-NHLRAVTEEDGHSLAEKEGLSFLE--------TSALEATNVEKAFQTIL 117
+++ GNK DL N L D L EK LS ++ S E N++ Q ++
Sbjct: 127 VLVLGNKRDLPNAL------DEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
V+ K + +WD GQ+R R++ YYR G + V D R + R L +
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDE 115
Query: 62 DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96
N V ++ NK DL + E + EK GL
Sbjct: 116 LRNAVWLVFANKQDLPEAMSAAE-----ITEKLGL 145
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ + DTAGQE Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
VE + + +WD GQ++ R + YY G + V D R+ D+ L R + +
Sbjct: 56 VEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEE 115
Query: 62 DSNIVIMMAGNKSDLNHLRAVTE 84
+ +I++ NK DL + + E
Sbjct: 116 LKDAIILVFANKQDLPNAMSAAE 138
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
V+ + V ++ DTA + R Y A L+VY + RQ+FD+ +L L HA
Sbjct: 64 VDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 63 S---NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA-LEATNVEKAFQTILT 118
+I ++ GNK D+ R VT+ +G +LA + G F E SA L+ +V+ F +
Sbjct: 123 ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
Query: 119 E 119
E
Sbjct: 183 E 183
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLR--E 56
VE K + +WD GQ++ R + Y++ G + V D R ++ D + + L+ E
Sbjct: 68 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 127
Query: 57 LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET 101
LRD V+++ NK D+ + V+E L +K GL L +
Sbjct: 128 LRDA-----VLLVFANKQDMPNAMPVSE-----LTDKLGLQHLRS 162
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAG E Y + Y L+ + + +F+NV +W+ E+
Sbjct: 44 VMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
++ F
Sbjct: 163 KGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
+++ G+ ++DTAG E Y + Y L+ + + +F+NV +W+ E+
Sbjct: 48 VMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 107
Query: 60 HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
H ++ G + DL N + +T E LA + + + ++E SAL
Sbjct: 108 HCPKT-PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 166
Query: 107 TNVEKAF 113
++ F
Sbjct: 167 KGLKNVF 173
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
V+ K + +WD GQ+R R++ YYR G + V D R + R L +
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 115
Query: 62 DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96
N ++ NK DL + E + EK GL
Sbjct: 116 LRNAAWLVFANKQDLPEAMSAAE-----ITEKLGL 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
V+ K + +WD GQ+R R++ YYR G + V D R + R L +
Sbjct: 39 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 98
Query: 62 DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96
N ++ NK DL + E + EK GL
Sbjct: 99 LRNAAWLVFANKQDLPEAMSAAE-----ITEKLGL 128
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLR--E 56
VE K + +WD GQ++ R + Y++ G + V D R + D + R L E
Sbjct: 59 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 118
Query: 57 LRDHADSNIVIMMAGNKSDL-NHLRA--VTEEDG-HSLAEK 93
LRD V+++ NK DL N + A +T++ G HSL ++
Sbjct: 119 LRD-----AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 154
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV 66
V ++WD GQ R+R++ Y RG + + D ++ + L L D I
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE 105
+++ GNK DL +L EKE + + SA++
Sbjct: 127 VLVLGNKRDLP----------GALDEKELIEKMNLSAIQ 155
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
VE K + +WD GQ++ R + Y++ G + V D R+ + L R L +
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 263
Query: 62 DSNIVIMMAGNKSDL-NHLRA--VTEEDG-HSLAEK 93
+ V+++ NK DL N + A +T++ G HSL +
Sbjct: 264 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 299
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF----DNVLRWL--RE 56
VE K + +WD GQ++ R + Y++ G + V D R+ + ++R L E
Sbjct: 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 115
Query: 57 LRDHADSNIVIMMAGNKSDL-NHLRA--VTEEDG-HSLAEK 93
LRD V+++ NK DL N + A +T++ G HSL +
Sbjct: 116 LRDA-----VLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV 66
V ++WD GQ R+R++ Y RG + + D ++ + L L D I
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLE--------TSALEATNVEKAFQTIL 117
+++ GNK DL A+ E++ L EK LS ++ S E N++ Q ++
Sbjct: 136 VLVLGNKRDLPG--ALDEKE---LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 189
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF----DNVLRWL--RE 56
VE K + +WD GQ++ R + Y++ G + V D R+ + ++R L E
Sbjct: 55 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 114
Query: 57 LRDHADSNIVIMMAGNKSDL-NHLRA--VTEEDG-HSLAEK 93
LRD V+++ NK DL N + A +T++ G HSL +
Sbjct: 115 LRDA-----VLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 150
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
VE K + +WD GQ++ R + YY+ + V D R L ++ + +
Sbjct: 56 VEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDE 115
Query: 63 -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96
N ++++ NK DL +++E + EK GL
Sbjct: 116 MRNAILLVFANKHDLPQAMSISE-----VTEKLGL 145
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF----DNVLRWL--RE 56
VE K + +WD GQ++ R + Y++ G + V D R+ + ++R L E
Sbjct: 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 98
Query: 57 LRDHADSNIVIMMAGNKSDL-NHLRA--VTEEDG-HSLAEK 93
LRD V+++ NK DL N + A +T++ G HSL +
Sbjct: 99 LRDA-----VLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 134
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR-DHA 61
+E + K IWD GQ+ R+ Y+ G + V D RQ + R L+ L +
Sbjct: 55 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114
Query: 62 DSNIVIMMAGNKSDL------NHLRAVTEED 86
+ +++ NK DL N +R V E D
Sbjct: 115 LAGATLLIFANKQDLPGALSSNAIREVLELD 145
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF----DNVLRWL--RE 56
VE K + +WD G ++ R + Y++ G + V D R+ + ++R L E
Sbjct: 41 VEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 100
Query: 57 LRDHADSNIVIMMAGNKSDL-NHLRA--VTEEDG-HSLAEK 93
LRD V+++ NK DL N + A +T++ G HSL +
Sbjct: 101 LRDA-----VLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 136
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR-DHA 61
+E + K IWD GQ+ R+ Y+ G + V D RQ + R L+ L +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 62 DSNIVIMMAGNKSDL 76
+ +++ NK DL
Sbjct: 117 LAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR-DHA 61
+E + K IWD GQ+ R+ Y+ G + V D RQ + R L+ L +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 62 DSNIVIMMAGNKSDL 76
+ +++ NK DL
Sbjct: 117 LAGATLLIFANKQDL 131
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
V+ + +WD GQ+R R++ YY G + V D R + R L +
Sbjct: 56 VQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 115
Query: 62 DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96
N ++ NK DL + E + EK GL
Sbjct: 116 LCNAAWLVFANKQDLPEAMSAAE-----ITEKLGL 145
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR-DHA 61
+E + K IWD GQ+ R+ Y+ G + V D RQ + R L+ L +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEER 116
Query: 62 DSNIVIMMAGNKSDL 76
+ +++ NK DL
Sbjct: 117 LAGATLLIFANKQDL 131
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIM 68
++D +GQ RYR + YY+ + V D + R L L +H D I I+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 69 MAGNKSDL 76
NK DL
Sbjct: 131 FFANKMDL 138
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMA 70
+WD AG+E + + + L VYD++K Q D WL ++ A S+ VI++
Sbjct: 58 VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVG 117
Query: 71 G--NKSDLNHLRAVTEEDGHSLAEKEGL 96
+ SD +A + L K G
Sbjct: 118 THLDVSDEKQRKACXSKITKELLNKRGF 145
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34 GALLVYDITK--RQTFDNVLRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVTEEDGHSL 90
G LL D+++ + FD+ L+++ L + A + I++ K D R + D H+
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTF 222
Query: 91 A-EKEGLSFLETSALEATNVEKAFQTILTEI 120
A K+ L +ETSA NV+ AF T++ I
Sbjct: 223 ALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMA 70
+WD AG+E + + + L VYD++K Q D WL ++ A S+ VI++
Sbjct: 60 VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVG 119
Query: 71 G--NKSDLNHLRAVTEEDGHSLAEKEGL 96
+ SD +A + L K G
Sbjct: 120 THLDVSDEKQRKACXSKITKELLNKRGF 147
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMA 70
+WD GQE R+ + YY ++V D T R+ L ++ H D +++
Sbjct: 70 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 129
Query: 71 GNKSDLNHLRAVTE 84
NK D+ V E
Sbjct: 130 ANKQDVKECMTVAE 143
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMA 70
+WD GQE R+ + YY ++V D T R+ L ++ H D +++
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 128
Query: 71 GNKSDLNHLRAVTE 84
NK D+ V E
Sbjct: 129 ANKQDVKECMTVAE 142
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMA 70
+WD GQE R+ + YY ++V D T R+ L ++ H D +++
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 71 GNKSDLNHLRAVTE 84
NK D+ V E
Sbjct: 124 ANKQDVKECMTVAE 137
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMA 70
+WD GQE R+ + YY ++V D T R+ L ++ H D +++
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 71 GNKSDLNHLRAVTE 84
NK D+ V E
Sbjct: 124 ANKQDVKECMTVAE 137
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMA 70
+WD GQE R+ + YY +LV D R+ L + H D +++
Sbjct: 64 MWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIF 123
Query: 71 GNKSDL 76
NK D+
Sbjct: 124 ANKQDM 129
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LREL 57
M+V+G+T I + AG A + + A + V+ + +F V R L L
Sbjct: 47 MLVDGQTHLVLIREEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 101
Query: 58 RDHADSNIVIMMAGNKSDLN--HLRAVTEEDGHSL-AEKEGLSFLETSALEATNVEKAFQ 114
R + + + G + ++ R V + +L A+ + S+ ET A NV++ FQ
Sbjct: 102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQ 161
Query: 115 TILTEI 120
+ ++
Sbjct: 162 EVAQKV 167
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LREL 57
M+V+G+T I + AG A + + A + V+ + +F V R L L
Sbjct: 47 MLVDGQTHLVLIREEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 101
Query: 58 RDHADSNIVIMMAGNKSDLN--HLRAVTEEDGHSL-AEKEGLSFLETSALEATNVEKAFQ 114
R + + + G + ++ R V + +L A+ + S+ ET A NV++ FQ
Sbjct: 102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQ 161
Query: 115 TILTEI 120
+ ++
Sbjct: 162 EVAQKV 167
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD 48
V+ + K +WD GQ + R +Y+ + V D R+ F+
Sbjct: 56 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD 48
V+ + K +WD GQ + R +Y+ + V D R+ F+
Sbjct: 55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD 48
V+ + K +WD GQ + R +Y+ + V D R+ F+
Sbjct: 43 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL------RELRD 59
K +K +WD GQ R YY + V D T + + L EL+D
Sbjct: 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119
Query: 60 HADSNIVIMMAGNKSD 75
A +++ NK D
Sbjct: 120 AA-----LLVFANKQD 130
>pdb|4FTD|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03550)
From Bacteroides Eggerthii Dsm 20697 At 1.91 A
Resolution
Length = 453
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVG----ALLVYDITKRQTFDNVLRWLRELR 58
+ G+ V ++ T +ERY + +A +GA AL VYD+TK +T ++ L+ E
Sbjct: 335 IAGEAVAPKVV-TFNEERYLLVCTAG-QGAASKASIALEVYDLTKGETIEDALKKFDEGE 392
Query: 59 DH 60
+H
Sbjct: 393 NH 394
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD-NVLRWLRELRDHADSN 64
K +K Q+WD GQ R YY + V D R + + L +
Sbjct: 44 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 103
Query: 65 IVIMMAGNKSDLNHLRAVTEED---GHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
++++ NK D+ +E G + +TSA + T +++A + ++
Sbjct: 104 AILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 159
>pdb|3M8O|H Chain H, Human Iga1 Fab Fragment
pdb|3QNX|B Chain B, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|B Chain B, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|D Chain D, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
Length = 221
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 26/115 (22%)
Query: 44 RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 103
RQ L W+ ++ +A+S+ A + L ++ +D + A FL+ ++
Sbjct: 38 RQASGKGLEWVGRIKRNAESDATAYAASMRGRLT----ISRDDSKNTA------FLQMNS 87
Query: 104 LEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKK 158
L++ + + I ++Y+ GQGT + V+ ASP+ K
Sbjct: 88 LKSDDTAMYYCVIRGDVYNRQW----------------GQGTLVTVSSASPTSPK 126
>pdb|4A2L|A Chain A, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|B Chain B, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|C Chain C, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|D Chain D, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|E Chain E, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|F Chain F, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|A Chain A, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|B Chain B, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|C Chain C, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|D Chain D, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
Length = 795
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
E+G S+ ++EGL + S L +NV K F + E
Sbjct: 516 EEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYE 550
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
++V+G++ I D G + +A+ V + D QT N L R+
Sbjct: 60 IVVDGQSYLLLIRDEGGPPELQ--FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA 117
Query: 61 ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLA-EKEGLSFLETSALEATNVEKAFQTILTE 119
++ +V++ + + R + + L+ + + ++ ET A NVE+ FQ + +
Sbjct: 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177
Query: 120 I 120
+
Sbjct: 178 V 178
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SN 64
K + ++WD GQ R Y+ + V D T R L L D +
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRK 123
Query: 65 IVIMMAGNKSDL 76
++++ NK DL
Sbjct: 124 SLLLIFANKQDL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,987,030
Number of Sequences: 62578
Number of extensions: 127243
Number of successful extensions: 860
Number of sequences better than 100.0: 350
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 350
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)