Query 031238
Match_columns 163
No_of_seqs 110 out of 1459
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 11:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.3E-33 1.1E-37 194.1 16.0 127 1-127 51-178 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1E-31 2.2E-36 187.1 13.0 126 2-127 48-173 (200)
3 KOG0078 GTP-binding protein SE 100.0 3.6E-31 7.8E-36 187.1 15.7 126 1-126 54-179 (207)
4 KOG0098 GTPase Rab2, small G p 100.0 1.6E-30 3.5E-35 180.1 14.5 126 1-126 48-173 (216)
5 cd04120 Rab12 Rab12 subfamily. 100.0 6.3E-30 1.4E-34 185.0 17.6 158 2-161 43-202 (202)
6 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.4E-30 1.6E-34 180.1 15.2 132 1-132 56-187 (222)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.2E-30 1.1E-34 178.9 13.1 124 2-125 65-189 (221)
8 KOG0088 GTPase Rab21, small G 100.0 4.1E-30 8.8E-35 174.1 12.2 126 2-127 56-181 (218)
9 PLN03110 Rab GTPase; Provision 100.0 6E-29 1.3E-33 181.8 18.3 162 2-163 55-216 (216)
10 KOG0079 GTP-binding protein H- 100.0 2E-29 4.4E-34 168.8 14.2 123 1-124 50-172 (198)
11 KOG0394 Ras-related GTPase [Ge 100.0 2.1E-28 4.7E-33 169.3 15.0 126 1-126 51-183 (210)
12 cd04121 Rab40 Rab40 subfamily. 100.0 4E-28 8.7E-33 174.0 16.9 120 2-122 49-168 (189)
13 KOG0080 GTPase Rab18, small G 100.0 4.5E-29 9.7E-34 169.3 11.0 124 1-124 53-177 (209)
14 KOG0093 GTPase Rab3, small G p 100.0 2.5E-28 5.5E-33 163.4 12.3 121 5-125 67-187 (193)
15 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.8E-27 3.9E-32 175.2 17.0 124 2-126 55-193 (232)
16 cd04126 Rab20 Rab20 subfamily. 100.0 3.9E-27 8.4E-32 172.4 18.0 123 6-128 42-197 (220)
17 KOG0091 GTPase Rab39, small G 100.0 2E-27 4.3E-32 161.7 14.8 127 4-130 54-182 (213)
18 cd04125 RabA_like RabA-like su 100.0 7.8E-27 1.7E-31 167.0 18.0 145 2-163 43-187 (188)
19 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 7.2E-27 1.6E-31 168.9 17.8 121 5-125 47-172 (201)
20 PTZ00099 rab6; Provisional 100.0 1.2E-26 2.5E-31 164.7 17.0 121 2-122 23-143 (176)
21 cd04144 Ras2 Ras2 subfamily. 100.0 9.6E-27 2.1E-31 166.9 16.6 122 2-123 41-165 (190)
22 KOG0081 GTPase Rab27, small G 100.0 6.9E-27 1.5E-31 158.5 14.6 120 5-124 64-184 (219)
23 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.9E-28 1.7E-32 158.8 9.4 125 1-125 40-164 (192)
24 cd04112 Rab26 Rab26 subfamily. 100.0 2.3E-26 5E-31 165.1 17.8 148 2-161 44-191 (191)
25 cd04110 Rab35 Rab35 subfamily. 99.9 1.5E-26 3.3E-31 167.1 16.7 124 3-127 50-173 (199)
26 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.4E-26 3.1E-31 165.1 15.1 119 2-121 47-180 (182)
27 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.3E-26 5E-31 168.4 16.3 123 2-125 43-180 (222)
28 cd04133 Rop_like Rop subfamily 99.9 1.5E-26 3.2E-31 164.2 14.1 118 2-120 43-172 (176)
29 cd04122 Rab14 Rab14 subfamily. 99.9 7.9E-26 1.7E-30 158.6 16.7 121 2-122 45-165 (166)
30 cd01875 RhoG RhoG subfamily. 99.9 4.4E-26 9.5E-31 163.7 15.1 119 2-121 45-177 (191)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.5E-26 1.6E-30 160.0 15.6 121 2-122 44-165 (172)
32 KOG0095 GTPase Rab30, small G 99.9 1.1E-26 2.4E-31 156.0 10.6 122 1-122 49-170 (213)
33 KOG0086 GTPase Rab4, small G p 99.9 6.3E-26 1.4E-30 152.9 14.0 135 2-136 52-186 (214)
34 cd04131 Rnd Rnd subfamily. Th 99.9 6.4E-26 1.4E-30 161.2 14.9 119 2-121 43-176 (178)
35 KOG0097 GTPase Rab14, small G 99.9 1.9E-25 4.2E-30 149.0 14.3 126 2-127 54-179 (215)
36 PTZ00369 Ras-like protein; Pro 99.9 3.3E-25 7.1E-30 158.8 16.3 123 2-124 47-170 (189)
37 cd04111 Rab39 Rab39 subfamily. 99.9 5.9E-25 1.3E-29 160.2 17.1 121 4-124 48-169 (211)
38 cd04109 Rab28 Rab28 subfamily. 99.9 3.3E-25 7.1E-30 161.9 15.7 118 6-123 48-168 (215)
39 cd01873 RhoBTB RhoBTB subfamil 99.9 2.1E-25 4.6E-30 160.7 14.4 115 2-119 60-194 (195)
40 PF00071 Ras: Ras family; Int 99.9 8.6E-25 1.9E-29 152.4 15.9 120 2-121 42-161 (162)
41 smart00176 RAN Ran (Ras-relate 99.9 9.6E-25 2.1E-29 157.8 16.0 118 2-122 38-155 (200)
42 cd04117 Rab15 Rab15 subfamily. 99.9 1E-24 2.2E-29 152.5 15.6 118 2-119 43-160 (161)
43 cd01867 Rab8_Rab10_Rab13_like 99.9 1.5E-24 3.2E-29 152.3 16.3 121 2-122 46-166 (167)
44 cd04127 Rab27A Rab27a subfamil 99.9 1.6E-24 3.4E-29 153.7 16.2 118 5-122 60-178 (180)
45 cd01874 Cdc42 Cdc42 subfamily. 99.9 6.7E-25 1.5E-29 155.5 14.2 118 2-120 43-174 (175)
46 cd04132 Rho4_like Rho4-like su 99.9 2E-24 4.3E-29 154.2 16.6 119 5-124 46-170 (187)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.9E-24 4.2E-29 151.4 16.3 120 2-121 45-164 (166)
48 cd04134 Rho3 Rho3 subfamily. 99.9 1E-24 2.2E-29 156.3 15.2 119 2-121 42-174 (189)
49 cd01865 Rab3 Rab3 subfamily. 99.9 2.3E-24 5.1E-29 151.0 16.6 120 3-122 45-164 (165)
50 PLN03108 Rab family protein; P 99.9 4.9E-24 1.1E-28 155.2 18.4 124 2-125 49-172 (210)
51 cd04136 Rap_like Rap-like subf 99.9 1.4E-24 3.1E-29 151.3 14.8 119 2-120 43-162 (163)
52 cd04175 Rap1 Rap1 subgroup. T 99.9 1.9E-24 4.1E-29 151.1 15.0 119 2-120 43-162 (164)
53 cd04118 Rab24 Rab24 subfamily. 99.9 5.2E-24 1.1E-28 152.8 17.4 123 2-125 44-170 (193)
54 PLN03118 Rab family protein; P 99.9 9.8E-24 2.1E-28 153.7 18.4 122 2-123 56-179 (211)
55 cd01871 Rac1_like Rac1-like su 99.9 2.2E-24 4.7E-29 152.8 14.4 117 2-119 43-173 (174)
56 cd04128 Spg1 Spg1p. Spg1p (se 99.9 4.2E-24 9.1E-29 152.4 15.3 120 2-122 43-167 (182)
57 cd01866 Rab2 Rab2 subfamily. 99.9 1.2E-23 2.6E-28 147.9 16.7 121 2-122 47-167 (168)
58 cd04119 RJL RJL (RabJ-Like) su 99.9 8.5E-24 1.8E-28 147.7 15.8 120 2-121 43-167 (168)
59 cd01868 Rab11_like Rab11-like. 99.9 1.3E-23 2.8E-28 147.0 16.4 119 2-120 46-164 (165)
60 cd04176 Rap2 Rap2 subgroup. T 99.9 6.1E-24 1.3E-28 148.3 14.5 119 2-120 43-162 (163)
61 smart00174 RHO Rho (Ras homolo 99.9 5.6E-24 1.2E-28 150.0 13.9 119 2-121 40-172 (174)
62 smart00173 RAS Ras subfamily o 99.9 1.6E-23 3.4E-28 146.3 15.3 120 2-121 42-162 (164)
63 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.6E-23 3.4E-28 146.1 15.3 119 2-120 44-163 (164)
64 cd01864 Rab19 Rab19 subfamily. 99.9 2E-23 4.3E-28 146.2 15.8 118 2-119 46-164 (165)
65 PLN03071 GTP-binding nuclear p 99.9 1.2E-23 2.6E-28 154.1 14.8 117 3-122 57-173 (219)
66 cd04113 Rab4 Rab4 subfamily. 99.9 2.2E-23 4.8E-28 145.2 15.5 118 2-119 43-160 (161)
67 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.8E-23 8.2E-28 145.9 16.3 121 2-122 43-166 (170)
68 cd04106 Rab23_lke Rab23-like s 99.9 2.4E-23 5.1E-28 145.0 14.9 114 5-119 48-161 (162)
69 smart00175 RAB Rab subfamily o 99.9 4.9E-23 1.1E-27 143.5 16.1 121 2-122 43-163 (164)
70 cd04140 ARHI_like ARHI subfami 99.9 2.8E-23 6.1E-28 145.5 14.9 116 3-118 44-162 (165)
71 cd04138 H_N_K_Ras_like H-Ras/N 99.9 7.6E-23 1.6E-27 142.1 15.4 118 2-120 43-161 (162)
72 cd04103 Centaurin_gamma Centau 99.9 3.3E-23 7.2E-28 144.6 13.5 113 2-119 41-157 (158)
73 cd00877 Ran Ran (Ras-related n 99.9 6.1E-23 1.3E-27 144.2 14.9 117 3-122 44-160 (166)
74 cd04116 Rab9 Rab9 subfamily. 99.9 8.4E-23 1.8E-27 143.6 15.5 117 2-119 48-169 (170)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.1E-22 2.3E-27 143.3 15.7 119 2-120 45-168 (170)
76 cd04124 RabL2 RabL2 subfamily. 99.9 8.7E-23 1.9E-27 142.6 15.1 118 2-123 43-160 (161)
77 cd01861 Rab6 Rab6 subfamily. 99.9 1.4E-22 3E-27 141.0 15.6 117 3-119 44-160 (161)
78 KOG0393 Ras-related small GTPa 99.9 1.5E-23 3.2E-28 148.8 10.6 122 1-123 45-181 (198)
79 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.9E-22 4.2E-27 140.8 15.7 115 5-120 49-163 (164)
80 cd01860 Rab5_related Rab5-rela 99.9 3.2E-22 6.9E-27 139.5 16.4 119 2-120 44-162 (163)
81 cd04146 RERG_RasL11_like RERG/ 99.9 1.5E-22 3.3E-27 141.7 14.5 120 2-121 41-164 (165)
82 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.2E-22 2.6E-27 143.4 14.0 116 2-118 42-171 (173)
83 cd04177 RSR1 RSR1 subgroup. R 99.9 2.3E-22 5E-27 141.3 15.2 120 2-121 43-164 (168)
84 cd04143 Rhes_like Rhes_like su 99.9 2.6E-22 5.7E-27 149.4 16.0 119 2-120 42-170 (247)
85 cd04123 Rab21 Rab21 subfamily. 99.9 5.2E-22 1.1E-26 137.8 16.4 118 3-120 44-161 (162)
86 KOG0395 Ras-related GTPase [Ge 99.9 2.7E-22 5.8E-27 144.3 14.9 121 2-122 45-166 (196)
87 cd04147 Ras_dva Ras-dva subfam 99.9 3.9E-22 8.4E-27 143.9 15.8 139 2-140 41-182 (198)
88 cd04148 RGK RGK subfamily. Th 99.9 3.8E-22 8.2E-27 146.4 15.2 123 2-126 44-168 (221)
89 cd04142 RRP22 RRP22 subfamily. 99.9 8.9E-22 1.9E-26 142.1 15.6 122 2-123 43-176 (198)
90 cd04135 Tc10 TC10 subfamily. 99.9 8.7E-22 1.9E-26 138.8 13.7 118 2-120 42-173 (174)
91 PLN00223 ADP-ribosylation fact 99.9 8.2E-22 1.8E-26 140.4 13.6 117 4-122 57-179 (181)
92 cd04114 Rab30 Rab30 subfamily. 99.9 2.6E-21 5.7E-26 135.7 15.9 119 2-120 50-168 (169)
93 cd01863 Rab18 Rab18 subfamily. 99.9 2.3E-21 5E-26 134.9 15.5 116 3-119 44-160 (161)
94 cd01862 Rab7 Rab7 subfamily. 99.9 3.8E-21 8.2E-26 135.0 16.6 122 2-123 43-169 (172)
95 cd04139 RalA_RalB RalA/RalB su 99.9 3.5E-21 7.7E-26 134.0 16.3 120 2-121 42-162 (164)
96 cd04149 Arf6 Arf6 subfamily. 99.9 6.1E-22 1.3E-26 139.5 11.9 112 5-118 50-167 (168)
97 cd04129 Rho2 Rho2 subfamily. 99.9 2.8E-21 6E-26 138.2 15.4 120 2-122 43-174 (187)
98 cd04158 ARD1 ARD1 subfamily. 99.9 1.9E-21 4E-26 137.0 13.0 117 4-122 39-162 (169)
99 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.1E-22 8.8E-27 139.8 8.5 115 3-118 39-163 (164)
100 cd00876 Ras Ras family. The R 99.9 9.3E-21 2E-25 131.3 15.3 118 2-119 41-159 (160)
101 smart00177 ARF ARF-like small 99.9 8.1E-22 1.7E-26 139.7 9.9 114 5-120 54-173 (175)
102 cd01892 Miro2 Miro2 subfamily. 99.9 2.8E-21 6E-26 136.2 12.3 118 2-121 48-166 (169)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.4E-22 1.6E-26 137.8 9.1 112 5-118 41-158 (159)
104 cd01870 RhoA_like RhoA-like su 99.9 9.8E-21 2.1E-25 133.5 14.9 118 2-120 43-174 (175)
105 cd00154 Rab Rab family. Rab G 99.9 1.4E-20 3E-25 129.7 15.2 115 3-117 44-158 (159)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.2E-20 4.7E-25 133.2 15.2 117 5-123 49-172 (183)
107 cd04137 RheB Rheb (Ras Homolog 99.9 4.2E-20 9.1E-25 131.0 16.1 121 2-122 43-164 (180)
108 PTZ00133 ADP-ribosylation fact 99.9 1.8E-20 4E-25 133.6 14.1 117 4-122 57-179 (182)
109 cd01893 Miro1 Miro1 subfamily. 99.8 5.9E-20 1.3E-24 128.8 14.0 118 3-121 42-164 (166)
110 KOG4252 GTP-binding protein [S 99.8 1.4E-21 2.9E-26 135.2 5.1 122 4-126 65-186 (246)
111 cd04154 Arl2 Arl2 subfamily. 99.8 3.7E-20 7.9E-25 130.7 12.6 110 7-118 57-172 (173)
112 cd00157 Rho Rho (Ras homology) 99.8 8.6E-20 1.9E-24 128.0 13.5 116 2-118 42-170 (171)
113 cd04157 Arl6 Arl6 subfamily. 99.8 8.3E-20 1.8E-24 127.0 12.2 112 5-118 42-161 (162)
114 cd04151 Arl1 Arl1 subfamily. 99.8 3.8E-20 8.3E-25 128.7 9.5 113 4-118 39-157 (158)
115 cd04161 Arl2l1_Arl13_like Arl2 99.8 3E-20 6.6E-25 130.6 8.9 112 5-118 40-166 (167)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.1E-19 4.6E-24 127.1 12.6 111 6-118 57-173 (174)
117 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.6E-19 5.6E-24 125.3 12.1 110 7-118 49-166 (167)
118 cd04102 RabL3 RabL3 (Rab-like3 99.8 8.8E-19 1.9E-23 126.8 14.8 103 5-107 51-176 (202)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.4E-19 5.3E-24 124.6 11.1 111 6-118 42-159 (160)
120 PF00025 Arf: ADP-ribosylation 99.8 7.4E-19 1.6E-23 124.6 12.8 113 6-120 56-175 (175)
121 PTZ00132 GTP-binding nuclear p 99.8 3.7E-18 8E-23 124.6 16.0 116 4-122 54-169 (215)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.5E-19 7.6E-24 123.6 10.0 111 6-118 41-157 (158)
123 cd00879 Sar1 Sar1 subfamily. 99.8 1.1E-18 2.3E-23 124.9 12.5 111 7-119 62-189 (190)
124 cd01890 LepA LepA subfamily. 99.8 1.6E-18 3.4E-23 122.7 12.9 111 4-120 63-176 (179)
125 smart00178 SAR Sar1p-like memb 99.8 2.2E-18 4.7E-23 123.0 12.5 111 7-119 60-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 99.8 7.2E-18 1.6E-22 115.1 13.6 119 3-123 55-180 (185)
127 KOG0070 GTP-binding ADP-ribosy 99.8 3.1E-18 6.8E-23 119.2 9.8 118 3-122 56-179 (181)
128 KOG0075 GTP-binding ADP-ribosy 99.8 3.2E-18 7E-23 114.9 8.2 114 3-121 60-182 (186)
129 cd04159 Arl10_like Arl10-like 99.7 2E-17 4.3E-22 114.0 10.2 110 7-118 43-158 (159)
130 PLN00023 GTP-binding protein; 99.7 5.1E-17 1.1E-21 123.9 11.9 91 6-96 81-189 (334)
131 cd01897 NOG NOG1 is a nucleola 99.7 5.8E-17 1.2E-21 113.4 10.9 112 6-120 45-167 (168)
132 cd04155 Arl3 Arl3 subfamily. 99.7 2.3E-16 5E-21 110.9 12.9 107 7-118 57-172 (173)
133 PRK12299 obgE GTPase CgtA; Rev 99.7 1.9E-16 4.1E-21 122.5 12.9 115 8-122 206-329 (335)
134 cd01898 Obg Obg subfamily. Th 99.7 1.1E-16 2.5E-21 112.1 10.4 111 8-119 48-169 (170)
135 KOG0071 GTP-binding ADP-ribosy 99.7 7.5E-16 1.6E-20 102.8 11.2 116 3-120 56-177 (180)
136 cd00882 Ras_like_GTPase Ras-li 99.7 5.2E-15 1.1E-19 100.2 14.4 114 4-117 41-156 (157)
137 cd04171 SelB SelB subfamily. 99.7 1.5E-15 3.3E-20 105.5 12.0 106 7-118 50-163 (164)
138 TIGR02528 EutP ethanolamine ut 99.7 5.8E-16 1.2E-20 105.7 9.5 98 11-117 38-141 (142)
139 KOG3883 Ras family small GTPas 99.7 1.6E-15 3.4E-20 102.8 11.2 114 9-122 61-176 (198)
140 cd01879 FeoB Ferrous iron tran 99.7 1.6E-15 3.5E-20 104.8 11.7 105 8-119 43-155 (158)
141 KOG1673 Ras GTPases [General f 99.7 1.1E-15 2.4E-20 103.7 10.1 121 2-123 63-188 (205)
142 TIGR01393 lepA GTP-binding pro 99.7 2.3E-15 5E-20 124.2 13.2 111 4-120 66-179 (595)
143 COG1100 GTPase SAR1 and relate 99.6 1.5E-14 3.2E-19 105.5 15.7 122 7-128 53-192 (219)
144 KOG0076 GTP-binding ADP-ribosy 99.6 4.9E-16 1.1E-20 107.1 6.9 115 7-123 68-189 (197)
145 cd01878 HflX HflX subfamily. 99.6 2.4E-15 5.3E-20 108.7 11.0 105 9-119 90-203 (204)
146 TIGR02729 Obg_CgtA Obg family 99.6 3.9E-15 8.4E-20 115.0 12.4 112 8-120 205-328 (329)
147 cd01891 TypA_BipA TypA (tyrosi 99.6 2.9E-15 6.2E-20 107.7 10.4 106 3-112 60-173 (194)
148 TIGR00231 small_GTP small GTP- 99.6 1.5E-14 3.3E-19 99.0 12.3 113 3-116 45-159 (161)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 9.4E-15 2E-19 102.0 11.2 110 7-120 49-165 (168)
150 cd01881 Obg_like The Obg-like 99.6 4.7E-15 1E-19 104.2 9.4 113 7-119 43-175 (176)
151 cd01888 eIF2_gamma eIF2-gamma 99.6 7.7E-15 1.7E-19 106.3 10.5 107 8-120 83-198 (203)
152 PRK05433 GTP-binding protein L 99.6 2E-14 4.3E-19 118.8 13.5 112 4-121 70-184 (600)
153 KOG0072 GTP-binding ADP-ribosy 99.6 3.8E-15 8.1E-20 99.9 7.4 118 3-122 57-180 (182)
154 PRK15467 ethanolamine utilizat 99.6 1.6E-14 3.4E-19 100.8 10.3 102 12-123 41-149 (158)
155 KOG4423 GTP-binding protein-li 99.6 1.8E-15 4E-20 105.5 4.0 115 8-122 75-195 (229)
156 cd01894 EngA1 EngA1 subfamily. 99.6 3.1E-14 6.8E-19 98.1 9.9 103 8-119 45-156 (157)
157 cd01889 SelB_euk SelB subfamil 99.6 5.7E-14 1.2E-18 100.8 10.9 114 5-122 65-187 (192)
158 cd00881 GTP_translation_factor 99.6 6E-14 1.3E-18 99.6 10.8 110 7-120 61-186 (189)
159 TIGR03156 GTP_HflX GTP-binding 99.6 1E-13 2.2E-18 108.0 12.8 105 8-119 237-350 (351)
160 PRK04213 GTP-binding protein; 99.5 1.8E-14 3.9E-19 103.9 7.2 106 9-121 53-192 (201)
161 TIGR00436 era GTP-binding prot 99.5 9.9E-14 2.1E-18 104.7 11.5 107 8-120 48-163 (270)
162 PRK03003 GTP-binding protein D 99.5 1.1E-13 2.4E-18 111.9 12.1 115 3-123 256-384 (472)
163 TIGR00157 ribosome small subun 99.5 3.2E-14 6.9E-19 105.9 8.2 96 19-118 24-120 (245)
164 PRK12297 obgE GTPase CgtA; Rev 99.5 3E-13 6.5E-18 107.4 13.8 112 7-122 205-328 (424)
165 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.2E-13 2.6E-18 110.5 11.1 105 8-124 251-363 (442)
166 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.9E-13 4.1E-18 94.0 9.9 101 7-120 48-156 (157)
167 PRK15494 era GTPase Era; Provi 99.5 3E-13 6.4E-18 105.1 11.6 107 7-121 99-216 (339)
168 PRK05291 trmE tRNA modificatio 99.5 9.3E-14 2E-18 111.6 9.0 101 8-122 263-371 (449)
169 PRK12296 obgE GTPase CgtA; Rev 99.5 4.6E-13 9.9E-18 107.9 12.8 117 7-124 205-343 (500)
170 KOG0074 GTP-binding ADP-ribosy 99.5 4.8E-14 1E-18 94.4 5.9 110 7-118 61-176 (185)
171 CHL00189 infB translation init 99.5 5.3E-13 1.2E-17 111.9 13.3 105 5-119 292-408 (742)
172 TIGR03594 GTPase_EngA ribosome 99.5 5.1E-13 1.1E-17 106.8 12.4 109 9-122 221-345 (429)
173 TIGR00487 IF-2 translation ini 99.5 4.3E-13 9.3E-18 110.5 11.8 103 9-118 136-247 (587)
174 PRK03003 GTP-binding protein D 99.5 3.7E-13 8E-18 108.9 10.8 105 9-122 87-200 (472)
175 TIGR00437 feoB ferrous iron tr 99.5 3.2E-13 6.9E-18 111.6 10.6 106 8-120 41-154 (591)
176 TIGR00475 selB selenocysteine- 99.5 7.9E-13 1.7E-17 109.1 12.4 107 8-121 50-166 (581)
177 PF00009 GTP_EFTU: Elongation 99.5 6E-13 1.3E-17 95.2 10.3 112 5-120 67-186 (188)
178 COG2229 Predicted GTPase [Gene 99.5 1.9E-12 4.2E-17 90.4 12.2 107 8-119 68-176 (187)
179 PRK11058 GTPase HflX; Provisio 99.5 1.3E-12 2.9E-17 104.1 12.3 109 9-122 246-363 (426)
180 PF08477 Miro: Miro-like prote 99.5 4.3E-13 9.3E-18 88.8 8.0 72 3-75 45-119 (119)
181 PRK05306 infB translation init 99.4 1E-12 2.2E-17 111.0 11.8 101 8-118 337-449 (787)
182 TIGR00483 EF-1_alpha translati 99.4 6.1E-13 1.3E-17 106.4 9.7 109 4-114 81-200 (426)
183 cd00880 Era_like Era (E. coli 99.4 9.7E-13 2.1E-17 90.0 9.2 108 8-119 45-162 (163)
184 COG0481 LepA Membrane GTPase L 99.4 1.7E-12 3.7E-17 102.2 10.7 112 4-121 72-186 (603)
185 KOG0096 GTPase Ran/TC4/GSP1 (n 99.4 1.4E-13 3.1E-18 96.3 4.2 115 5-122 56-170 (216)
186 PRK12298 obgE GTPase CgtA; Rev 99.4 3.7E-12 8E-17 100.5 12.7 113 9-122 208-334 (390)
187 TIGR03680 eif2g_arch translati 99.4 1.7E-12 3.6E-17 103.2 10.7 112 7-120 79-195 (406)
188 TIGR01394 TypA_BipA GTP-bindin 99.4 1.4E-12 3.1E-17 107.7 10.4 114 4-121 60-191 (594)
189 TIGR00491 aIF-2 translation in 99.4 4.2E-12 9.1E-17 104.7 13.0 104 9-119 70-214 (590)
190 cd04163 Era Era subfamily. Er 99.4 3.6E-12 7.7E-17 88.1 10.6 110 6-119 49-167 (168)
191 PRK00089 era GTPase Era; Revie 99.4 3.7E-12 8.1E-17 97.0 11.1 110 7-120 52-170 (292)
192 PRK04000 translation initiatio 99.4 3.4E-12 7.3E-17 101.6 11.1 107 8-120 85-200 (411)
193 KOG0462 Elongation factor-type 99.4 2E-12 4.3E-17 103.2 9.6 114 4-121 121-235 (650)
194 cd01895 EngA2 EngA2 subfamily. 99.4 9.9E-12 2.1E-16 86.7 11.8 107 9-119 51-173 (174)
195 PRK00093 GTP-binding protein D 99.4 6.3E-12 1.4E-16 100.8 12.1 100 8-118 49-159 (435)
196 PRK12317 elongation factor 1-a 99.4 3E-12 6.6E-17 102.3 8.8 110 3-114 79-198 (425)
197 TIGR03594 GTPase_EngA ribosome 99.3 1.6E-11 3.5E-16 98.2 12.0 103 8-121 47-160 (429)
198 PRK00454 engB GTP-binding prot 99.3 2.7E-11 5.8E-16 86.8 11.8 107 8-120 70-193 (196)
199 PRK10218 GTP-binding protein; 99.3 1.4E-11 3E-16 101.9 11.5 114 3-120 63-194 (607)
200 cd04166 CysN_ATPS CysN_ATPS su 99.3 1.1E-11 2.3E-16 90.2 9.7 103 7-112 76-185 (208)
201 cd01883 EF1_alpha Eukaryotic e 99.3 6.4E-12 1.4E-16 92.1 8.5 104 5-110 74-194 (219)
202 PRK09518 bifunctional cytidyla 99.3 9.7E-11 2.1E-15 99.1 16.3 108 9-122 499-622 (712)
203 PRK09518 bifunctional cytidyla 99.3 2.7E-11 5.9E-16 102.4 11.9 106 8-122 323-437 (712)
204 PRK10512 selenocysteinyl-tRNA- 99.3 4.2E-11 9E-16 99.5 12.1 105 9-120 52-165 (614)
205 PF02421 FeoB_N: Ferrous iron 99.3 1.5E-11 3.3E-16 85.2 7.7 102 8-116 47-156 (156)
206 PRK00093 GTP-binding protein D 99.3 3.7E-11 8E-16 96.3 11.0 110 8-122 221-345 (435)
207 PRK04004 translation initiatio 99.3 7.7E-11 1.7E-15 97.4 12.9 103 10-119 73-216 (586)
208 TIGR03598 GTPase_YsxC ribosome 99.3 2.8E-11 6E-16 85.9 8.8 98 9-110 65-179 (179)
209 cd00066 G-alpha G protein alph 99.3 5.5E-11 1.2E-15 91.7 11.0 122 3-124 156-314 (317)
210 PRK09554 feoB ferrous iron tra 99.3 6.5E-11 1.4E-15 100.4 12.2 110 4-120 46-167 (772)
211 cd04167 Snu114p Snu114p subfam 99.3 5.1E-11 1.1E-15 86.9 9.6 70 4-77 67-136 (213)
212 cd04168 TetM_like Tet(M)-like 99.3 1.2E-10 2.6E-15 86.3 11.5 70 4-77 60-129 (237)
213 cd04105 SR_beta Signal recogni 99.2 7.7E-11 1.7E-15 85.4 9.7 73 6-78 46-123 (203)
214 PRK14845 translation initiatio 99.2 2E-10 4.3E-15 99.5 13.1 102 10-118 528-670 (1049)
215 cd04165 GTPBP1_like GTPBP1-lik 99.2 3E-10 6.5E-15 83.5 12.3 107 7-117 83-219 (224)
216 smart00275 G_alpha G protein a 99.2 3.5E-10 7.5E-15 88.1 12.8 121 5-125 181-338 (342)
217 cd01884 EF_Tu EF-Tu subfamily. 99.2 3.8E-10 8.2E-15 81.3 12.0 103 4-110 61-172 (195)
218 COG1159 Era GTPase [General fu 99.2 2.1E-10 4.5E-15 86.1 10.4 113 4-121 50-172 (298)
219 COG0532 InfB Translation initi 99.2 3.7E-10 8.1E-15 90.4 12.4 103 8-120 55-169 (509)
220 PRK12736 elongation factor Tu; 99.2 3.8E-10 8.3E-15 89.5 11.5 99 5-107 72-179 (394)
221 cd01855 YqeH YqeH. YqeH is an 99.2 3.7E-10 8E-15 80.9 10.2 94 20-120 23-124 (190)
222 cd01896 DRG The developmentall 99.2 1E-09 2.2E-14 81.3 12.4 49 65-120 177-225 (233)
223 cd01885 EF2 EF2 (for archaea a 99.2 3.4E-10 7.4E-15 83.1 9.5 69 5-77 70-138 (222)
224 TIGR00485 EF-Tu translation el 99.1 6.7E-10 1.4E-14 88.1 11.2 101 3-107 70-179 (394)
225 cd01876 YihA_EngB The YihA (En 99.1 9.4E-10 2E-14 76.1 10.6 105 9-119 46-169 (170)
226 PRK00741 prfC peptide chain re 99.1 9.7E-10 2.1E-14 89.9 12.0 71 3-77 74-144 (526)
227 cd01859 MJ1464 MJ1464. This f 99.1 2.9E-10 6.2E-15 78.9 7.7 95 21-121 2-96 (156)
228 PTZ00327 eukaryotic translatio 99.1 9.1E-10 2E-14 88.6 11.0 110 9-120 118-232 (460)
229 cd04169 RF3 RF3 subfamily. Pe 99.1 1E-09 2.2E-14 82.7 10.5 72 3-78 66-137 (267)
230 PRK09866 hypothetical protein; 99.1 1.8E-09 3.9E-14 88.8 12.5 109 8-118 230-350 (741)
231 PLN00043 elongation factor 1-a 99.1 7.1E-10 1.5E-14 89.1 9.9 103 4-111 81-203 (447)
232 PRK12289 GTPase RsgA; Reviewed 99.1 6E-10 1.3E-14 86.8 8.4 94 21-119 79-173 (352)
233 PRK12735 elongation factor Tu; 99.1 1.5E-09 3.2E-14 86.2 10.8 100 5-108 72-180 (396)
234 PF10662 PduV-EutP: Ethanolami 99.1 1.2E-09 2.7E-14 74.3 8.9 98 11-117 39-142 (143)
235 PRK13351 elongation factor G; 99.0 3.2E-09 6.9E-14 89.7 11.7 69 5-77 70-138 (687)
236 TIGR02034 CysN sulfate adenyly 99.0 2.8E-09 6E-14 84.9 10.3 104 6-112 78-188 (406)
237 KOG1707 Predicted Ras related/ 99.0 6.9E-10 1.5E-14 89.5 6.5 118 6-123 54-177 (625)
238 PRK00098 GTPase RsgA; Reviewed 99.0 9.9E-10 2.1E-14 84.1 7.0 85 29-117 78-163 (298)
239 PRK13768 GTPase; Provisional 99.0 3.8E-09 8.2E-14 79.1 9.8 111 9-120 98-246 (253)
240 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.8E-09 3.9E-14 82.2 8.1 86 28-118 75-161 (287)
241 PRK05124 cysN sulfate adenylyl 99.0 2.3E-09 4.9E-14 86.9 8.5 105 5-112 104-216 (474)
242 COG1160 Predicted GTPases [Gen 99.0 1.1E-08 2.5E-13 80.7 11.9 101 9-120 52-164 (444)
243 TIGR03597 GTPase_YqeH ribosome 99.0 5.3E-09 1.1E-13 82.1 9.8 95 18-119 50-151 (360)
244 KOG1145 Mitochondrial translat 99.0 1.8E-08 3.8E-13 81.2 12.7 106 8-122 201-317 (683)
245 COG2262 HflX GTPases [General 99.0 1.9E-08 4.1E-13 78.5 12.6 109 9-123 241-358 (411)
246 PRK12740 elongation factor G; 98.9 1.3E-08 2.8E-13 85.8 11.9 68 6-77 58-125 (668)
247 COG0486 ThdF Predicted GTPase 98.9 7.4E-09 1.6E-13 82.0 9.6 108 5-123 262-378 (454)
248 COG1160 Predicted GTPases [Gen 98.9 1.9E-08 4.2E-13 79.5 11.5 111 9-123 227-353 (444)
249 PRK12288 GTPase RsgA; Reviewed 98.9 9.2E-09 2E-13 80.2 9.7 87 29-118 118-205 (347)
250 KOG1489 Predicted GTP-binding 98.9 1.2E-08 2.7E-13 77.1 9.4 107 9-118 245-364 (366)
251 CHL00071 tufA elongation facto 98.9 1.7E-08 3.6E-13 80.5 10.7 101 5-109 72-181 (409)
252 cd01886 EF-G Elongation factor 98.9 7.6E-09 1.6E-13 78.2 8.0 69 6-78 62-130 (270)
253 PRK05506 bifunctional sulfate 98.9 1.5E-08 3.3E-13 84.8 10.3 102 7-111 103-211 (632)
254 PTZ00141 elongation factor 1- 98.9 1.9E-08 4E-13 81.0 10.0 105 4-111 81-203 (446)
255 PRK00049 elongation factor Tu; 98.9 4.7E-08 1E-12 77.7 11.9 99 6-108 73-180 (396)
256 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 2.1E-08 4.6E-13 73.9 9.2 113 7-121 47-176 (232)
257 PLN03127 Elongation factor Tu; 98.8 5.1E-08 1.1E-12 78.5 10.7 97 4-104 120-225 (447)
258 PLN03126 Elongation factor Tu; 98.8 3.5E-08 7.6E-13 80.0 9.3 99 6-108 142-249 (478)
259 cd04170 EF-G_bact Elongation f 98.8 9E-08 2E-12 72.2 10.9 88 6-99 62-149 (268)
260 cd01899 Ygr210 Ygr210 subfamil 98.8 5.5E-08 1.2E-12 75.0 9.4 53 64-120 214-268 (318)
261 KOG1423 Ras-like GTPase ERA [C 98.8 7.2E-08 1.6E-12 72.9 9.5 116 3-121 115-271 (379)
262 KOG0082 G-protein alpha subuni 98.8 1.6E-07 3.5E-12 72.7 11.6 124 4-127 191-350 (354)
263 TIGR00503 prfC peptide chain r 98.8 4.5E-08 9.9E-13 80.2 9.1 71 3-77 75-145 (527)
264 KOG0077 Vesicle coat complex C 98.8 3.8E-08 8.2E-13 68.0 7.1 112 6-119 62-191 (193)
265 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.9E-08 8.4E-13 68.3 7.2 88 28-120 5-94 (157)
266 PRK12739 elongation factor G; 98.8 1.5E-07 3.2E-12 79.7 12.0 68 6-77 71-138 (691)
267 TIGR00484 EF-G translation elo 98.7 6.1E-08 1.3E-12 82.0 9.6 95 6-106 73-171 (689)
268 KOG1490 GTP-binding protein CR 98.7 6.8E-08 1.5E-12 77.2 9.0 128 3-131 210-351 (620)
269 COG0536 Obg Predicted GTPase [ 98.7 1.5E-07 3.4E-12 72.0 10.0 116 9-124 208-336 (369)
270 COG1084 Predicted GTPase [Gene 98.7 8.7E-08 1.9E-12 73.0 8.6 114 4-121 211-336 (346)
271 cd01849 YlqF_related_GTPase Yl 98.7 1E-07 2.2E-12 66.2 8.2 85 33-121 1-85 (155)
272 COG0370 FeoB Fe2+ transport sy 98.7 2.7E-07 5.9E-12 76.2 10.4 105 8-119 50-162 (653)
273 COG4917 EutP Ethanolamine util 98.6 2E-07 4.3E-12 61.6 6.6 98 12-118 41-143 (148)
274 cd01856 YlqF YlqF. Proteins o 98.6 2.4E-07 5.1E-12 65.3 7.5 92 22-121 10-101 (171)
275 cd04104 p47_IIGP_like p47 (47- 98.6 9.7E-07 2.1E-11 63.6 10.3 107 9-122 53-185 (197)
276 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.9E-07 6.2E-12 62.9 7.2 76 27-108 7-84 (141)
277 PF09439 SRPRB: Signal recogni 98.6 3E-07 6.5E-12 65.3 7.3 70 9-78 50-126 (181)
278 PF00503 G-alpha: G-protein al 98.6 5E-07 1.1E-11 71.7 9.4 114 7-120 235-389 (389)
279 COG5257 GCD11 Translation init 98.5 3.4E-07 7.3E-12 69.7 7.4 109 9-122 87-203 (415)
280 COG1217 TypA Predicted membran 98.5 5.8E-07 1.3E-11 71.4 8.9 114 4-121 64-195 (603)
281 PRK13796 GTPase YqeH; Provisio 98.5 1.1E-06 2.4E-11 69.2 10.3 92 20-119 58-157 (365)
282 KOG0090 Signal recognition par 98.5 4.2E-06 9.1E-11 60.3 11.8 68 10-77 84-158 (238)
283 PRK09435 membrane ATPase/prote 98.5 1.2E-06 2.7E-11 67.8 9.8 115 6-131 147-270 (332)
284 TIGR00101 ureG urease accessor 98.5 8.5E-07 1.9E-11 64.1 8.4 102 8-120 92-195 (199)
285 TIGR03596 GTPase_YlqF ribosome 98.5 1.1E-06 2.4E-11 66.6 9.3 91 24-122 14-104 (276)
286 COG5256 TEF1 Translation elong 98.5 8.2E-07 1.8E-11 69.6 8.3 107 4-112 81-202 (428)
287 COG2895 CysN GTPases - Sulfate 98.5 1.2E-06 2.7E-11 67.4 9.1 97 9-110 87-192 (431)
288 cd01850 CDC_Septin CDC/Septin. 98.5 1.4E-06 3E-11 66.1 8.7 97 3-104 58-185 (276)
289 KOG1144 Translation initiation 98.4 1.9E-06 4.2E-11 71.9 9.1 111 9-127 541-693 (1064)
290 TIGR00490 aEF-2 translation el 98.4 8.5E-07 1.8E-11 75.5 6.8 71 3-77 81-151 (720)
291 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.6E-06 5.7E-11 64.9 8.6 100 15-122 7-107 (287)
292 PRK01889 GTPase RsgA; Reviewed 98.4 2.3E-06 4.9E-11 67.2 8.4 83 29-117 110-193 (356)
293 PRK00007 elongation factor G; 98.3 5.5E-06 1.2E-10 70.3 10.2 94 7-106 74-171 (693)
294 TIGR00750 lao LAO/AO transport 98.3 2.4E-06 5.3E-11 65.5 7.3 105 6-121 125-238 (300)
295 TIGR00073 hypB hydrogenase acc 98.3 7.5E-06 1.6E-10 59.5 9.5 101 8-119 103-205 (207)
296 COG0218 Predicted GTPase [Gene 98.3 1.6E-05 3.5E-10 56.9 10.5 105 10-121 72-197 (200)
297 PF03029 ATP_bind_1: Conserved 98.3 5.2E-06 1.1E-10 61.7 8.0 110 9-120 92-236 (238)
298 COG4108 PrfC Peptide chain rel 98.3 3.8E-06 8.2E-11 66.5 7.5 90 1-96 74-163 (528)
299 KOG3886 GTP-binding protein [S 98.2 1.1E-05 2.3E-10 59.1 8.4 69 8-77 53-129 (295)
300 COG1163 DRG Predicted GTPase [ 98.2 3.4E-05 7.4E-10 59.0 11.2 112 3-121 105-289 (365)
301 smart00010 small_GTPase Small 98.2 1.3E-05 2.9E-10 52.7 7.9 76 25-110 40-115 (124)
302 PRK09602 translation-associate 98.2 2.4E-05 5.2E-10 62.2 10.5 51 64-118 217-268 (396)
303 PF06858 NOG1: Nucleolar GTP-b 98.2 9.8E-06 2.1E-10 46.3 5.7 43 32-75 14-58 (58)
304 COG1162 Predicted GTPases [Gen 98.1 2.1E-05 4.5E-10 59.8 8.7 96 20-118 68-164 (301)
305 PLN00116 translation elongatio 98.1 1.5E-05 3.3E-10 69.0 7.8 68 6-77 96-163 (843)
306 COG3276 SelB Selenocysteine-sp 98.1 6.4E-05 1.4E-09 59.6 10.3 110 8-121 50-162 (447)
307 PRK07560 elongation factor EF- 98.0 1.3E-05 2.8E-10 68.5 6.9 70 4-77 83-152 (731)
308 PTZ00416 elongation factor 2; 98.0 1.6E-05 3.4E-10 68.9 7.4 67 7-77 91-157 (836)
309 KOG1707 Predicted Ras related/ 98.0 3.8E-05 8.3E-10 62.7 8.9 115 4-123 470-585 (625)
310 KOG0099 G protein subunit Galp 98.0 4E-05 8.6E-10 57.2 8.0 121 7-127 201-375 (379)
311 KOG1191 Mitochondrial GTPase [ 98.0 2.4E-05 5.1E-10 62.8 7.1 118 6-124 314-453 (531)
312 COG0480 FusA Translation elong 98.0 1.7E-05 3.6E-10 67.0 5.9 66 7-76 75-140 (697)
313 KOG0468 U5 snRNP-specific prot 97.9 2.1E-05 4.5E-10 65.2 5.7 70 3-76 192-261 (971)
314 KOG0458 Elongation factor 1 al 97.9 3E-05 6.5E-10 63.2 6.4 107 3-111 250-372 (603)
315 cd01852 AIG1 AIG1 (avrRpt2-ind 97.9 0.00033 7.2E-09 50.3 11.0 111 8-120 49-183 (196)
316 cd01882 BMS1 Bms1. Bms1 is an 97.9 0.00017 3.7E-09 53.1 9.2 96 6-108 81-183 (225)
317 PF01926 MMR_HSR1: 50S ribosom 97.9 0.00016 3.6E-09 47.3 8.2 59 9-73 48-116 (116)
318 KOG1532 GTPase XAB1, interacts 97.8 0.00045 9.8E-09 52.0 11.0 114 7-123 115-266 (366)
319 KOG0705 GTPase-activating prot 97.8 0.00014 3.1E-09 59.3 8.7 120 2-126 71-194 (749)
320 KOG3905 Dynein light intermedi 97.7 0.0013 2.8E-08 50.8 11.5 59 64-122 222-291 (473)
321 COG3596 Predicted GTPase [Gene 97.7 0.00031 6.6E-09 52.8 7.7 111 9-121 88-222 (296)
322 COG5258 GTPBP1 GTPase [General 97.6 0.001 2.2E-08 52.4 10.1 102 9-114 202-332 (527)
323 COG0050 TufB GTPases - transla 97.6 0.0003 6.6E-09 53.4 6.9 92 8-106 75-178 (394)
324 smart00053 DYNc Dynamin, GTPas 97.6 0.0004 8.6E-09 51.7 7.5 68 8-78 125-206 (240)
325 KOG0461 Selenocysteine-specifi 97.6 0.00085 1.8E-08 52.1 9.3 109 4-120 66-192 (522)
326 PF05783 DLIC: Dynein light in 97.6 0.0014 3E-08 53.3 11.0 117 7-123 72-266 (472)
327 KOG3887 Predicted small GTPase 97.5 0.001 2.2E-08 49.3 8.6 117 6-125 73-206 (347)
328 cd03110 Fer4_NifH_child This p 97.5 0.0014 3.1E-08 46.2 9.2 86 6-100 91-176 (179)
329 PF00350 Dynamin_N: Dynamin fa 97.5 0.00039 8.4E-09 48.4 5.9 63 9-74 102-168 (168)
330 TIGR02836 spore_IV_A stage IV 97.4 0.0022 4.8E-08 51.3 10.0 108 4-116 87-232 (492)
331 KOG0466 Translation initiation 97.4 0.00028 6.1E-09 53.9 4.8 103 9-120 126-240 (466)
332 COG0378 HypB Ni2+-binding GTPa 97.3 0.00065 1.4E-08 48.6 5.3 101 8-120 97-200 (202)
333 KOG0085 G protein subunit Galp 97.3 0.00035 7.6E-09 51.4 4.1 124 4-127 195-355 (359)
334 TIGR00991 3a0901s02IAP34 GTP-b 97.3 0.0022 4.7E-08 49.4 8.2 72 7-78 85-167 (313)
335 KOG0465 Mitochondrial elongati 97.1 0.0025 5.4E-08 52.7 7.8 66 7-76 103-168 (721)
336 PRK10463 hydrogenase nickel in 97.1 0.0012 2.7E-08 50.3 5.5 55 65-119 231-287 (290)
337 KOG0464 Elongation factor G [T 97.0 0.00013 2.8E-09 57.8 -0.7 72 2-77 96-167 (753)
338 PTZ00258 GTP-binding protein; 97.0 0.0088 1.9E-07 47.6 9.3 44 64-107 220-266 (390)
339 cd04178 Nucleostemin_like Nucl 96.9 0.0024 5.2E-08 45.1 5.0 44 33-78 1-44 (172)
340 KOG1424 Predicted GTP-binding 96.8 0.0032 6.9E-08 51.1 5.9 76 20-105 164-244 (562)
341 KOG1143 Predicted translation 96.7 0.011 2.3E-07 46.7 7.6 100 9-112 250-379 (591)
342 KOG0460 Mitochondrial translat 96.6 0.0083 1.8E-07 46.7 6.7 89 12-103 121-217 (449)
343 KOG0467 Translation elongation 96.6 0.0051 1.1E-07 52.2 5.9 64 5-76 69-136 (887)
344 PF03308 ArgK: ArgK protein; 96.6 0.0022 4.8E-08 48.0 3.4 105 8-126 122-235 (266)
345 PF04548 AIG1: AIG1 family; I 96.5 0.026 5.7E-07 41.1 8.3 112 8-121 49-186 (212)
346 cd01853 Toc34_like Toc34-like 96.4 0.014 3E-07 43.8 6.7 69 8-77 79-162 (249)
347 COG1161 Predicted GTPases [Gen 96.4 0.015 3.2E-07 45.2 6.9 95 15-116 17-112 (322)
348 COG1703 ArgK Putative periplas 96.4 0.027 6E-07 43.1 7.9 109 6-125 142-258 (323)
349 KOG4273 Uncharacterized conser 96.3 0.026 5.7E-07 42.2 7.3 90 29-121 76-222 (418)
350 TIGR00064 ftsY signal recognit 96.2 0.04 8.6E-07 41.8 8.1 95 7-114 154-261 (272)
351 COG3640 CooC CO dehydrogenase 96.0 0.078 1.7E-06 39.3 8.5 62 8-76 134-197 (255)
352 KOG0410 Predicted GTP binding 96.0 0.016 3.4E-07 44.9 4.9 104 9-123 227-343 (410)
353 KOG0448 Mitofusin 1 GTPase, in 95.9 0.059 1.3E-06 45.5 8.5 93 9-105 207-310 (749)
354 PF11111 CENP-M: Centromere pr 95.8 0.21 4.5E-06 35.3 9.6 89 31-120 64-152 (176)
355 KOG1486 GTP-binding protein DR 95.8 0.18 3.9E-06 37.9 9.6 50 65-121 239-288 (364)
356 PHA02518 ParA-like protein; Pr 95.7 0.094 2E-06 37.7 8.2 66 7-75 76-144 (211)
357 KOG2484 GTPase [General functi 95.7 0.03 6.6E-07 44.3 5.6 82 18-108 133-219 (435)
358 KOG0469 Elongation factor 2 [T 95.5 0.027 5.8E-07 46.2 4.9 69 4-76 94-162 (842)
359 PRK14974 cell division protein 95.5 0.11 2.4E-06 40.7 8.1 101 8-120 223-329 (336)
360 cd02038 FleN-like FleN is a me 95.4 0.087 1.9E-06 35.7 6.6 65 8-76 45-109 (139)
361 PF14331 ImcF-related_N: ImcF- 95.4 0.083 1.8E-06 40.0 7.0 95 30-127 24-137 (266)
362 TIGR03348 VI_IcmF type VI secr 95.3 0.15 3.3E-06 46.3 9.5 68 10-77 163-256 (1169)
363 PRK10416 signal recognition pa 95.3 0.14 3E-06 39.8 8.0 96 6-114 195-303 (318)
364 KOG0447 Dynamin-like GTP bindi 95.2 0.68 1.5E-05 38.7 11.8 95 9-106 413-526 (980)
365 KOG1954 Endocytosis/signaling 95.1 0.037 8E-07 43.7 4.3 70 9-81 148-228 (532)
366 PRK09601 GTP-binding protein Y 95.0 0.57 1.2E-05 37.1 10.8 41 65-105 200-241 (364)
367 PF05049 IIGP: Interferon-indu 94.8 0.24 5.3E-06 39.3 8.3 105 9-120 87-217 (376)
368 cd02036 MinD Bacterial cell di 94.5 0.67 1.5E-05 32.1 9.4 84 9-99 64-147 (179)
369 TIGR01425 SRP54_euk signal rec 94.2 0.28 6.2E-06 39.7 7.5 64 7-76 182-251 (429)
370 cd03111 CpaE_like This protein 93.9 0.49 1.1E-05 30.4 7.0 62 9-73 44-106 (106)
371 TIGR03371 cellulose_yhjQ cellu 93.8 0.85 1.9E-05 33.5 9.1 65 9-76 116-180 (246)
372 TIGR00959 ffh signal recogniti 93.8 0.33 7.1E-06 39.3 7.1 87 7-103 182-274 (428)
373 KOG2423 Nucleolar GTPase [Gene 93.6 0.33 7.2E-06 38.9 6.8 94 29-128 211-306 (572)
374 cd03112 CobW_like The function 93.6 0.21 4.6E-06 34.6 5.2 64 7-76 86-158 (158)
375 PF09419 PGP_phosphatase: Mito 93.6 1.8 3.9E-05 30.5 9.8 85 29-116 36-127 (168)
376 COG1149 MinD superfamily P-loo 93.2 1.1 2.3E-05 34.1 8.6 80 8-99 164-243 (284)
377 PF00735 Septin: Septin; Inte 92.9 0.52 1.1E-05 36.0 6.7 66 31-101 113-181 (281)
378 TIGR00993 3a0901s04IAP86 chlor 92.7 0.65 1.4E-05 39.7 7.5 71 8-78 166-250 (763)
379 KOG0463 GTP-binding protein GP 92.4 0.95 2.1E-05 36.2 7.6 99 9-112 220-349 (641)
380 KOG0459 Polypeptide release fa 92.4 0.14 3.1E-06 40.9 3.1 106 8-114 157-279 (501)
381 cd02037 MRP-like MRP (Multiple 92.2 2 4.3E-05 29.8 8.6 89 6-99 66-162 (169)
382 COG4963 CpaE Flp pilus assembl 92.2 1.4 3E-05 34.9 8.4 68 7-77 217-284 (366)
383 PRK00771 signal recognition pa 91.9 1.1 2.3E-05 36.5 7.7 85 9-103 177-267 (437)
384 COG0552 FtsY Signal recognitio 91.9 1.4 2.9E-05 34.5 7.8 93 6-112 220-326 (340)
385 KOG2486 Predicted GTPase [Gene 91.8 0.2 4.4E-06 38.1 3.2 103 9-117 184-312 (320)
386 cd02117 NifH_like This family 91.7 2.2 4.7E-05 30.9 8.6 89 7-100 116-207 (212)
387 PRK10867 signal recognition pa 91.5 1.4 3E-05 35.9 7.9 87 7-103 183-275 (433)
388 PRK13185 chlL protochlorophyll 91.2 2.4 5.1E-05 31.8 8.6 84 7-99 117-202 (270)
389 TIGR01968 minD_bact septum sit 90.9 2.2 4.7E-05 31.6 8.1 65 7-76 111-175 (261)
390 COG3523 IcmF Type VI protein s 90.7 3.5 7.6E-05 37.7 10.2 68 10-77 176-269 (1188)
391 cd02042 ParA ParA and ParB of 90.5 1.7 3.6E-05 27.4 6.3 45 8-55 40-84 (104)
392 KOG0780 Signal recognition par 90.5 1 2.2E-05 36.0 6.1 54 5-58 181-240 (483)
393 PRK13505 formate--tetrahydrofo 90.3 2.5 5.4E-05 35.3 8.4 56 63-120 371-428 (557)
394 PRK12727 flagellar biosynthesi 90.3 6.1 0.00013 33.2 10.6 104 7-122 428-537 (559)
395 PF00448 SRP54: SRP54-type pro 90.2 5.1 0.00011 28.8 9.2 91 8-111 84-181 (196)
396 CHL00175 minD septum-site dete 90.1 2.5 5.5E-05 31.9 8.0 65 7-76 126-190 (281)
397 cd03114 ArgK-like The function 89.9 1.2 2.5E-05 30.6 5.5 33 7-42 91-123 (148)
398 PF01656 CbiA: CobQ/CobB/MinD/ 89.8 1.5 3.2E-05 30.8 6.1 67 8-77 95-161 (195)
399 COG0523 Putative GTPases (G3E 89.5 1.7 3.6E-05 34.0 6.6 97 8-112 85-192 (323)
400 PRK13849 putative crown gall t 88.8 1.8 3.8E-05 32.1 6.1 67 6-75 82-151 (231)
401 cd03115 SRP The signal recogni 88.7 6.2 0.00014 27.3 8.8 83 7-99 82-170 (173)
402 PRK14723 flhF flagellar biosyn 88.0 6.6 0.00014 34.4 9.6 107 8-124 264-378 (767)
403 cd02032 Bchl_like This family 87.7 5.5 0.00012 29.8 8.3 68 7-76 115-184 (267)
404 PRK10818 cell division inhibit 86.8 5.2 0.00011 29.9 7.7 67 7-76 113-185 (270)
405 COG5019 CDC3 Septin family pro 86.6 6.7 0.00014 31.2 8.2 42 31-77 133-175 (373)
406 TIGR01007 eps_fam capsular exo 86.2 3.5 7.5E-05 29.5 6.2 67 7-77 127-193 (204)
407 COG0541 Ffh Signal recognition 86.0 2.4 5.2E-05 34.4 5.6 63 8-76 183-251 (451)
408 TIGR01281 DPOR_bchL light-inde 85.9 8 0.00017 28.9 8.3 85 7-100 115-201 (268)
409 PRK11537 putative GTP-binding 85.7 12 0.00026 29.1 9.4 96 8-113 91-196 (318)
410 PF07015 VirC1: VirC1 protein; 85.3 4.8 0.0001 29.9 6.6 103 7-114 83-187 (231)
411 PRK05703 flhF flagellar biosyn 84.8 10 0.00022 30.8 8.9 102 8-122 300-410 (424)
412 cd01900 YchF YchF subfamily. 84.5 2.2 4.8E-05 32.5 4.7 34 9-42 63-103 (274)
413 PF09547 Spore_IV_A: Stage IV 84.1 7.7 0.00017 31.7 7.6 66 33-103 147-217 (492)
414 cd02040 NifH NifH gene encodes 83.9 12 0.00026 27.8 8.5 66 7-73 116-184 (270)
415 KOG2655 Septin family protein 83.7 6.4 0.00014 31.3 7.0 97 4-105 75-201 (366)
416 KOG2485 Conserved ATP/GTP bind 83.6 4.3 9.3E-05 31.6 5.8 96 14-116 28-126 (335)
417 CHL00072 chlL photochlorophyll 83.6 18 0.00038 27.7 9.7 68 7-76 115-184 (290)
418 TIGR01969 minD_arch cell divis 83.5 4.7 0.0001 29.6 6.1 64 7-76 108-172 (251)
419 PF02492 cobW: CobW/HypB/UreG, 82.8 2.1 4.5E-05 30.2 3.8 81 8-94 85-170 (178)
420 PF03193 DUF258: Protein of un 82.4 3.6 7.8E-05 28.8 4.7 27 90-116 7-33 (161)
421 PRK06995 flhF flagellar biosyn 81.5 23 0.0005 29.4 9.7 103 8-123 335-445 (484)
422 PRK12723 flagellar biosynthesi 81.1 18 0.00039 29.1 8.8 95 7-113 254-356 (388)
423 PRK11670 antiporter inner memb 81.1 23 0.0005 28.2 9.4 66 7-76 215-281 (369)
424 TIGR02016 BchX chlorophyllide 81.0 17 0.00038 27.9 8.5 84 7-98 122-209 (296)
425 PRK06731 flhF flagellar biosyn 80.4 13 0.00029 28.2 7.5 85 7-103 154-246 (270)
426 KOG0781 Signal recognition par 79.2 11 0.00024 31.3 6.9 72 7-78 466-544 (587)
427 KOG1547 Septin CDC10 and relat 78.3 27 0.00059 26.5 8.3 97 4-105 100-227 (336)
428 KOG3929 Uncharacterized conser 77.8 4.9 0.00011 30.6 4.4 35 11-46 95-134 (363)
429 cd02035 ArsA ArsA ATPase funct 77.6 14 0.00031 26.7 6.9 66 8-76 114-182 (217)
430 TIGR01287 nifH nitrogenase iro 76.5 27 0.00059 26.2 8.3 66 7-73 115-183 (275)
431 cd02033 BchX Chlorophyllide re 76.4 23 0.0005 27.8 7.9 109 7-123 147-275 (329)
432 TIGR02475 CobW cobalamin biosy 75.2 26 0.00057 27.5 8.1 36 8-43 93-135 (341)
433 PRK14721 flhF flagellar biosyn 75.2 32 0.00069 28.0 8.6 104 8-124 270-381 (420)
434 PRK14722 flhF flagellar biosyn 75.1 40 0.00086 27.0 9.0 92 8-103 216-316 (374)
435 PRK13232 nifH nitrogenase redu 75.0 25 0.00055 26.4 7.8 68 7-75 116-185 (273)
436 PRK11889 flhF flagellar biosyn 75.0 22 0.00049 28.9 7.6 86 7-103 320-412 (436)
437 PRK13695 putative NTPase; Prov 74.3 26 0.00056 24.3 8.8 81 26-120 91-172 (174)
438 KOG2961 Predicted hydrolase (H 73.3 29 0.00062 24.3 7.4 83 33-117 42-131 (190)
439 COG0012 Predicted GTPase, prob 73.2 15 0.00032 29.4 6.1 41 64-105 206-248 (372)
440 PRK12726 flagellar biosynthesi 73.1 41 0.00089 27.2 8.6 92 7-110 285-382 (407)
441 cd00477 FTHFS Formyltetrahydro 70.4 30 0.00065 28.9 7.5 65 54-120 346-412 (524)
442 TIGR03029 EpsG chain length de 70.4 17 0.00037 27.2 5.9 51 7-59 212-262 (274)
443 PF10087 DUF2325: Uncharacteri 70.4 24 0.00051 22.1 7.1 17 85-101 65-81 (97)
444 PRK13507 formate--tetrahydrofo 69.9 32 0.0007 29.1 7.6 62 56-120 393-457 (587)
445 PRK12724 flagellar biosynthesi 69.6 30 0.00065 28.3 7.3 86 7-103 299-394 (432)
446 PRK13230 nitrogenase reductase 68.0 49 0.0011 24.9 8.0 51 7-58 116-167 (279)
447 TIGR01005 eps_transp_fam exopo 67.8 19 0.0004 31.5 6.2 67 7-77 655-721 (754)
448 TIGR03815 CpaE_hom_Actino heli 66.3 25 0.00054 27.2 6.2 62 7-74 204-265 (322)
449 COG1419 FlhF Flagellar GTP-bin 65.8 65 0.0014 26.2 8.4 62 7-75 281-349 (407)
450 COG2759 MIS1 Formyltetrahydrof 65.7 45 0.00098 27.6 7.5 59 62-122 367-427 (554)
451 PF03709 OKR_DC_1_N: Orn/Lys/A 64.4 36 0.00079 22.1 6.4 42 31-74 36-77 (115)
452 PRK13869 plasmid-partitioning 62.9 44 0.00096 26.9 7.2 67 7-76 251-326 (405)
453 PRK13705 plasmid-partitioning 62.7 53 0.0011 26.4 7.5 67 7-76 234-306 (388)
454 PHA02519 plasmid partition pro 62.2 60 0.0013 26.1 7.7 68 6-76 233-306 (387)
455 TIGR03453 partition_RepA plasm 61.7 60 0.0013 25.9 7.7 34 7-42 234-267 (387)
456 PRK13506 formate--tetrahydrofo 61.5 59 0.0013 27.6 7.6 63 56-120 385-450 (578)
457 cd04170 EF-G_bact Elongation f 59.5 9.4 0.0002 28.6 2.7 24 97-120 242-265 (268)
458 PRK10037 cell division protein 58.7 50 0.0011 24.4 6.4 35 6-42 116-150 (250)
459 PLN02759 Formate--tetrahydrofo 57.1 65 0.0014 27.6 7.2 63 56-120 442-507 (637)
460 PRK13231 nitrogenase reductase 56.9 79 0.0017 23.5 8.7 53 7-60 113-166 (264)
461 COG0012 Predicted GTPase, prob 56.6 16 0.00034 29.2 3.4 36 7-42 66-108 (372)
462 TIGR03018 pepcterm_TyrKin exop 56.1 63 0.0014 23.1 6.4 48 9-58 150-197 (207)
463 PRK13233 nifH nitrogenase redu 55.9 84 0.0018 23.5 7.8 67 7-74 118-187 (275)
464 PF01268 FTHFS: Formate--tetra 54.2 11 0.00024 31.6 2.4 66 52-120 359-427 (557)
465 PRK13235 nifH nitrogenase redu 53.6 93 0.002 23.3 8.4 68 6-74 116-186 (274)
466 COG5192 BMS1 GTP-binding prote 52.9 1.4E+02 0.0031 25.8 8.4 95 4-106 109-211 (1077)
467 PTZ00386 formyl tetrahydrofola 51.6 1.1E+02 0.0024 26.3 7.6 64 55-120 428-495 (625)
468 PF05014 Nuc_deoxyrib_tr: Nucl 51.1 47 0.001 21.3 4.6 43 27-76 57-101 (113)
469 PRK13234 nifH nitrogenase redu 51.1 1.1E+02 0.0024 23.4 8.9 68 6-74 118-188 (295)
470 PF08438 MMR_HSR1_C: GTPase of 50.7 19 0.00042 23.4 2.7 31 70-104 1-32 (109)
471 PF11071 DUF2872: Protein of u 49.9 44 0.00095 22.6 4.2 40 24-70 65-106 (141)
472 cd01983 Fer4_NifH The Fer4_Nif 49.4 54 0.0012 19.3 6.6 34 10-43 36-70 (99)
473 COG1908 FrhD Coenzyme F420-red 49.1 47 0.001 22.2 4.2 59 66-124 56-125 (132)
474 cd04169 RF3 RF3 subfamily. Pe 48.4 16 0.00036 27.5 2.4 24 97-120 241-264 (267)
475 TIGR03566 FMN_reduc_MsuE FMN r 48.0 33 0.00072 23.9 3.8 47 27-73 64-110 (174)
476 PF14784 ECIST_Cterm: C-termin 47.2 45 0.00097 22.3 4.0 39 31-69 83-123 (126)
477 cd01851 GBP Guanylate-binding 46.6 50 0.0011 24.1 4.7 39 6-44 58-104 (224)
478 COG1010 CobJ Precorrin-3B meth 46.5 1.2E+02 0.0027 22.7 6.7 48 27-74 150-197 (249)
479 cd01886 EF-G Elongation factor 46.4 19 0.00041 27.3 2.5 25 96-120 243-267 (270)
480 cd02011 TPP_PK Thiamine pyroph 46.2 1.2E+02 0.0026 22.5 12.4 96 29-124 76-177 (227)
481 PRK06756 flavodoxin; Provision 45.4 47 0.001 22.3 4.2 45 28-72 46-91 (148)
482 PRK13556 azoreductase; Provisi 45.0 1.1E+02 0.0025 21.9 9.1 47 27-73 85-144 (208)
483 COG2179 Predicted hydrolase of 44.5 1.1E+02 0.0024 21.7 5.8 28 44-74 45-72 (175)
484 KOG3022 Predicted ATPase, nucl 43.4 1.5E+02 0.0033 22.9 6.9 91 4-99 153-252 (300)
485 PF12098 DUF3574: Protein of u 42.7 28 0.00061 22.5 2.5 43 10-52 38-82 (104)
486 cd02067 B12-binding B12 bindin 42.5 72 0.0016 20.4 4.6 42 31-74 50-91 (119)
487 TIGR03646 YtoQ_fam YtoQ family 41.5 67 0.0015 21.8 4.1 40 24-70 68-109 (144)
488 TIGR00092 GTP-binding protein 41.3 36 0.00077 27.2 3.3 35 8-42 67-108 (368)
489 PRK13660 hypothetical protein; 40.6 1.2E+02 0.0027 21.6 5.7 18 25-42 123-140 (182)
490 TIGR01753 flav_short flavodoxi 40.6 56 0.0012 21.3 3.9 70 28-98 42-113 (140)
491 TIGR03567 FMN_reduc_SsuE FMN r 40.5 41 0.0009 23.4 3.3 47 27-73 61-107 (171)
492 KOG2743 Cobalamin synthesis pr 39.5 56 0.0012 25.7 4.0 37 7-43 145-189 (391)
493 COG1192 Soj ATPases involved i 38.9 85 0.0018 23.2 5.0 69 6-76 118-189 (259)
494 PF03358 FMN_red: NADPH-depend 38.7 1.2E+02 0.0026 20.2 6.9 70 26-96 65-137 (152)
495 PRK06242 flavodoxin; Provision 38.5 1.2E+02 0.0026 20.2 6.3 67 28-99 40-106 (150)
496 KOG1491 Predicted GTP-binding 38.1 27 0.00059 27.7 2.2 36 7-42 83-125 (391)
497 PRK10569 NAD(P)H-dependent FMN 38.0 52 0.0011 23.5 3.5 44 27-73 62-108 (191)
498 cd01900 YchF YchF subfamily. 37.9 31 0.00068 26.3 2.5 41 64-105 195-237 (274)
499 PF07764 Omega_Repress: Omega 37.5 38 0.00082 19.6 2.2 22 102-123 44-65 (71)
500 COG3033 TnaA Tryptophanase [Am 37.5 1.2E+02 0.0027 24.5 5.7 56 53-108 174-232 (471)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-33 Score=194.12 Aligned_cols=127 Identities=49% Similarity=0.823 Sum_probs=120.1
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+.++|+.++|++|||+|+++|+.+...||++|+|||+|||+++..||+.+..|+.++.++...++|.++||||+|+.+.+
T Consensus 51 ~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 51 VELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred eeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence 35799999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred cCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 81 AVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
.++.++++.++..++++ ++++||+++.|++++|..+...+.......
T Consensus 131 ~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 131 VVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLH 178 (205)
T ss_pred ecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence 99999999999999998 999999999999999999999887765544
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-31 Score=187.06 Aligned_cols=126 Identities=44% Similarity=0.732 Sum_probs=117.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.++...++|.+|||+|+++|+++.++||+++++.|+|||+++.+||..++.|+.++.+..+.++-|.++|||+||.+.+.
T Consensus 48 ~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~ 127 (200)
T KOG0092|consen 48 TVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE 127 (200)
T ss_pred EeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc
Confidence 46777899999999999999999999999999999999999999999999999999988777788888999999998899
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
+..++++.+++..++.|+++||+++.|++++|..|.+.+.....+.
T Consensus 128 V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 128 VEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred ccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccc
Confidence 9999999999999999999999999999999999999987755443
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.6e-31 Score=187.11 Aligned_cols=126 Identities=46% Similarity=0.863 Sum_probs=119.7
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+.++|..+.+++|||+|+++|+.+...||++|+++++|||+++..||+++..|+..+.++.+.++|+++||||+|+..++
T Consensus 54 i~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R 133 (207)
T KOG0078|consen 54 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR 133 (207)
T ss_pred EEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
+++.+.++.++.++|+.++|+||++|.||++.|-.|.+.+..+...
T Consensus 134 ~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 134 QVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred cccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999875443
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=180.13 Aligned_cols=126 Identities=52% Similarity=0.920 Sum_probs=120.3
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+++++++++|++|||+|++.+.+..+.||+++-+.|+|||+++.++|+.+..|+..+++....+..++++|||+||...+
T Consensus 48 ~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 48 VTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred EEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 46899999999999999999999999999999999999999999999999999999999977789999999999999999
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
.++.++++.+++++|+.++++||++++|++|+|......++.....
T Consensus 128 ~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 128 EVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred cccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887654
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=6.3e-30 Score=185.01 Aligned_cols=158 Identities=35% Similarity=0.627 Sum_probs=132.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+++..|+..+......+.|+++||||+|+...++
T Consensus 43 ~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 43 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred EECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 46788899999999999999999999999999999999999999999999999988776555799999999999987788
Q ss_pred CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHH-HhHhHHHHhhhccccCCCCCCceeecCCCCCCcccC
Q 031238 82 VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIYHI-ISKKALAAQQASANTALPGQGTTINVNDASPSVKKG 159 (163)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (163)
+..++++++++.. ++.++++||++|.|++++|+++++.+... ........-..+..+.++.+.-+-+.|++.+|. .
T Consensus 123 v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 200 (202)
T cd04120 123 ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHV--R 200 (202)
T ss_pred cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCc--c
Confidence 8888898898875 78999999999999999999999887654 223333344555566666677777788877664 3
Q ss_pred cc
Q 031238 160 CC 161 (163)
Q Consensus 160 ~c 161 (163)
||
T Consensus 201 ~~ 202 (202)
T cd04120 201 CC 202 (202)
T ss_pred cC
Confidence 55
No 6
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-30 Score=180.07 Aligned_cols=132 Identities=81% Similarity=1.188 Sum_probs=124.1
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+.++++.++.+||||+|+++|+.+...||+++.+.++|||++...+|+.+..|+.+++.....++++++||||+||...+
T Consensus 56 ~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr 135 (222)
T KOG0087|consen 56 VNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR 135 (222)
T ss_pred eeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc
Confidence 46799999999999999999999999999999999999999999999999999999999988899999999999998889
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHh
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQ 132 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 132 (163)
.+..++++.+++..++.++++||.++.|++++|+.++..++....++.....
T Consensus 136 aV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~ 187 (222)
T KOG0087|consen 136 AVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDEN 187 (222)
T ss_pred ccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999998877754443
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-30 Score=178.86 Aligned_cols=124 Identities=38% Similarity=0.698 Sum_probs=115.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC-CCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK~Dl~~~~ 80 (163)
.+.+..+.|++|||+|+++|+.+...|++++.++|+|||+++..||+...+|++.++...+. ++-|++||||.||.+++
T Consensus 65 ~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 65 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred EEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence 46788999999999999999999999999999999999999999999999999999998874 58889999999999999
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+++.++++..+++++..|+++||+.|.||+++|..|...+..+..
T Consensus 145 qvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 145 QVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999998877766544
No 8
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.1e-30 Score=174.05 Aligned_cols=126 Identities=40% Similarity=0.688 Sum_probs=116.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++....|.+|||+|+++|..+...||++++++++|||++|.+||+.++.|..+++...+..+-+++||||+||++.+.
T Consensus 56 n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 56 NVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ 135 (218)
T ss_pred ccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence 45677889999999999999999999999999999999999999999999999999998887789999999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
++..+.+.+++.-|..|+++||+++.||.++|+.+....++....+
T Consensus 136 Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~ 181 (218)
T KOG0088|consen 136 VTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR 181 (218)
T ss_pred hhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999988877654433
No 9
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=6e-29 Score=181.82 Aligned_cols=162 Identities=90% Similarity=1.255 Sum_probs=129.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.++||||+|++++..++..++++++++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+...+.
T Consensus 55 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 134 (216)
T PLN03110 55 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS 134 (216)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC
Confidence 45788899999999999999999999999999999999999999999999999998877656799999999999977778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCCCceeecCCCCCCcccCcc
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 161 (163)
+..+++..++...+++++++||+++.|++++|++++..+......+...+.....+..+++...+.........+++|||
T Consensus 135 ~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (216)
T PLN03110 135 VAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCC 214 (216)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCc
Confidence 88888998998889999999999999999999999999988655444333322221122222222222233455667899
Q ss_pred CC
Q 031238 162 ST 163 (163)
Q Consensus 162 ~~ 163 (163)
++
T Consensus 215 ~~ 216 (216)
T PLN03110 215 ST 216 (216)
T ss_pred CC
Confidence 85
No 10
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2e-29 Score=168.83 Aligned_cols=123 Identities=45% Similarity=0.775 Sum_probs=117.4
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
|.++|..++|++|||+|+++|+.+...+|++.+++++|||+++.+||.+...|+.++...++ .+|=++||||.|..+.+
T Consensus 50 v~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 50 VDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred eecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccce
Confidence 45789999999999999999999999999999999999999999999999999999998877 68899999999999989
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+..++.+.++...|+.+|++||+.++|++..|.-|.+++.+.+
T Consensus 129 vV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 129 VVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred eeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=169.26 Aligned_cols=126 Identities=37% Similarity=0.659 Sum_probs=115.1
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCC
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDL 76 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl 76 (163)
+.+|++.+.+++|||+|+++|.++.-.+|+++|..++|||++++.||+.+..|..++..... ..+|+||+|||.|+
T Consensus 51 v~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 51 VQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred EEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 35789999999999999999999999999999999999999999999999999999987654 46999999999999
Q ss_pred cc--cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 77 NH--LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 77 ~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
.+ .++++.+.++.+|...| ++||++||+.+.|++++|+.+.+..+.....
T Consensus 131 ~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 131 DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred CCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 65 28899999999998875 7999999999999999999999999887654
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=4e-28 Score=174.00 Aligned_cols=120 Identities=38% Similarity=0.730 Sum_probs=111.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|+++..|+..+....+ ++|+|+||||.|+...+.
T Consensus 49 ~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 49 LLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccC
Confidence 4678889999999999999999999999999999999999999999999999999977654 799999999999987788
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
++.++++.+++..+++++++||++|.|++++|+++.+.+..
T Consensus 128 v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 128 VATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred CCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999987754
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.5e-29 Score=169.27 Aligned_cols=124 Identities=44% Similarity=0.711 Sum_probs=115.7
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
|.++|+.+++-+|||+|+++|+.+...||+++.++|+|||++.+++|..+..|+.++.-+.. .++-.++||||+|....
T Consensus 53 m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~ 132 (209)
T KOG0080|consen 53 MQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE 132 (209)
T ss_pred EEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc
Confidence 46799999999999999999999999999999999999999999999999999999988876 56777899999998778
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+.++.+++..+++++++-++++||++.+|++..|+.+++.+++..
T Consensus 133 R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 133 RVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999887654
No 14
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-28 Score=163.39 Aligned_cols=121 Identities=44% Similarity=0.802 Sum_probs=114.7
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
.+.+.+++|||+|+++|+.+...+|++++++|++||+++.+||..+..|.-.|..++-.+.|+|+|+||+||...+.++.
T Consensus 67 ~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~ 146 (193)
T KOG0093|consen 67 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISH 146 (193)
T ss_pred ccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeH
Confidence 45689999999999999999999999999999999999999999999999999988878899999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+.++.++.+.|+.+|++||+.+.|++.+|+.++..+.+...
T Consensus 147 e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 147 ERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998877543
No 15
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.8e-27 Score=175.25 Aligned_cols=124 Identities=27% Similarity=0.485 Sum_probs=110.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.++||||+|++.|..++..+++++|++|+|||++++.+|+.+ ..|+..+....+ +.|+++||||.|+..
T Consensus 55 ~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~ 133 (232)
T cd04174 55 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDL 133 (232)
T ss_pred EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccccc
Confidence 4688899999999999999999999999999999999999999999985 799999987665 689999999999854
Q ss_pred ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCC-CHHHHHHHHHHHHHHHHhH
Q 031238 79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEAT-NVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~~~~~l~~~~~~~~~~ 126 (163)
.+.++.++++++++.+++ .|+++||++|+ |++++|+.++..+++...+
T Consensus 134 ~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 134 STLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred chhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 256889999999999998 69999999998 8999999999988765433
No 16
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=3.9e-27 Score=172.38 Aligned_cols=123 Identities=30% Similarity=0.507 Sum_probs=108.7
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc-------
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH------- 78 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~------- 78 (163)
..+.+.||||+|++.|..++..+++++|++|+|||++++++|+.+..|+..+......+.|+|+||||+|+.+
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence 4678999999999999999999999999999999999999999999888888765445789999999999865
Q ss_pred ------------cccCCHHHHHHHHHHcC--------------CcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhH
Q 031238 79 ------------LRAVTEEDGHSLAEKEG--------------LSFLETSALEATNVEKAFQTILTEIYHIISKKA 128 (163)
Q Consensus 79 ------------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 128 (163)
.+.+..++++.+++..+ ++|+++||++|.|++++|..++..++....++.
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 57788899999998876 679999999999999999999998887665553
No 17
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2e-27 Score=161.69 Aligned_cols=127 Identities=45% Similarity=0.807 Sum_probs=115.7
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCccccc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~ 81 (163)
.|..++|+||||+|+++++++...||+++-++++|||+++.+||+.+..|+.+...... ..+.+++||+|+||...++
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 57889999999999999999999999999999999999999999999999999877655 3445678999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALA 130 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 130 (163)
++.++++.+++.+|..++++||++|.|+++.|..+.+.+.....+.++.
T Consensus 134 Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik 182 (213)
T KOG0091|consen 134 VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIK 182 (213)
T ss_pred ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCcee
Confidence 9999999999999999999999999999999999999888877664433
No 18
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=7.8e-27 Score=166.98 Aligned_cols=145 Identities=37% Similarity=0.631 Sum_probs=123.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++.+..++..+++++|++|+|||++++.+|+.+..|+..+........|+++++||.|+.+.+.
T Consensus 43 ~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~ 122 (188)
T cd04125 43 YIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV 122 (188)
T ss_pred EECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccccc
Confidence 45677889999999999999999999999999999999999999999999999999877655689999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCCCceeecCCCCCCcccCcc
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 161 (163)
+..+....+++..+++++++||+++.|++++|+++++.+........ . .+ +..+.+.+++.+|
T Consensus 123 v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~-----------~----~~--~~~~~~~~~~~~~ 185 (188)
T cd04125 123 VDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE-----------L----SP--KNIKQQFKKKNNC 185 (188)
T ss_pred CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc-----------C----Cc--cccccccccccCc
Confidence 88888888888888999999999999999999999998865432221 1 11 2346667888999
Q ss_pred CC
Q 031238 162 ST 163 (163)
Q Consensus 162 ~~ 163 (163)
+|
T Consensus 186 ~~ 187 (188)
T cd04125 186 FI 187 (188)
T ss_pred cc
Confidence 97
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=7.2e-27 Score=168.95 Aligned_cols=121 Identities=36% Similarity=0.657 Sum_probs=108.1
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----CCCCeEEEEeeCCCCcccc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA----DSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~Dl~~~~ 80 (163)
+..+.+.+|||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+.... ..++|+++|+||.|+.+.+
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL 126 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc
Confidence 678899999999999999999999999999999999999999999999998886532 2468999999999997667
Q ss_pred cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 81 AVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
.+..+++.++++..+ ..++++||++|.|++++|+++++.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 127 AKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred ccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence 778889999999988 589999999999999999999998876543
No 20
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.2e-26 Score=164.71 Aligned_cols=121 Identities=37% Similarity=0.700 Sum_probs=109.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.++++.+++.||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+......+.|+++||||+|+...+.
T Consensus 23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 102 (176)
T PTZ00099 23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRK 102 (176)
T ss_pred EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 46788999999999999999999999999999999999999999999999999998776545789999999999976677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+++..++..++..++++||++|.|++++|++|++.+..
T Consensus 103 v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 103 VTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 88888888888888899999999999999999999988754
No 21
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=9.6e-27 Score=166.92 Aligned_cols=122 Identities=38% Similarity=0.619 Sum_probs=108.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~ 78 (163)
.+++..+.++||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+..... .+.|+++||||+|+..
T Consensus 41 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 41 VVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 3577788999999999999999999999999999999999999999999999988876542 4689999999999977
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+.+...++..++...+++++++||++|.|++++|+++++.+...
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 777887788888888889999999999999999999999877543
No 22
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.9e-27 Score=158.49 Aligned_cols=120 Identities=47% Similarity=0.791 Sum_probs=109.8
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~ 83 (163)
+..+++++|||+|+++|+++...++++|-+++++||+++..||.+++.|+.++....- .+..|++.|||.||++.++++
T Consensus 64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 4568999999999999999999999999999999999999999999999999876533 366799999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.++..+++++.+++||++||-+|.|+++..+.++..++++.
T Consensus 144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888776654
No 23
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=7.9e-28 Score=158.83 Aligned_cols=125 Identities=47% Similarity=0.774 Sum_probs=117.0
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+.++++++++++|||+|+++|++....||+++|+++++||+.+..||++.+.|+.+|.++.+..+.++++|||+|+...+
T Consensus 40 i~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er 119 (192)
T KOG0083|consen 40 IDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER 119 (192)
T ss_pred eccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh
Confidence 35789999999999999999999999999999999999999999999999999999999988788899999999997778
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
.+..++++.+++..+++++++||++|.|++..|-.|.+.+.+...
T Consensus 120 ~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 120 AVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred ccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhcc
Confidence 888899999999999999999999999999999999988876543
No 24
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.3e-26 Score=165.07 Aligned_cols=148 Identities=43% Similarity=0.701 Sum_probs=123.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.++||||+|++++..++..+++++|++|+|||++++++++++..|+..+......++|+++|+||.|+...+.
T Consensus 44 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~ 123 (191)
T cd04112 44 TVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV 123 (191)
T ss_pred EECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc
Confidence 45778889999999999999999999999999999999999999999999999999887655789999999999976677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCCCceeecCCCCCCcccCcc
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 161 (163)
+..++.+.++...+.+|+++||++|.|++++|+++.+.+...... .++..+-+.+.=++...+.++||
T Consensus 124 ~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 124 VKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE------------QPDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc------------cCCCCcEEeccccCcccccCCCC
Confidence 777888888888889999999999999999999999888654311 12333334555556667778888
No 25
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=1.5e-26 Score=167.07 Aligned_cols=124 Identities=44% Similarity=0.745 Sum_probs=110.6
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.|||++|++.+..++..++++++++|+|||++++++|+.+..|+..+..... ..|+++||||+|+...+.+
T Consensus 50 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~ 128 (199)
T cd04110 50 INGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVV 128 (199)
T ss_pred ECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccccccc
Confidence 467788999999999999999999999999999999999999999999999999877654 6899999999999776777
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
..++...+++..+.+++++||++|.|++++|+++...++.....+
T Consensus 129 ~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~ 173 (199)
T cd04110 129 ETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDN 173 (199)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence 778888888888899999999999999999999999887654333
No 26
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=1.4e-26 Score=165.09 Aligned_cols=119 Identities=26% Similarity=0.546 Sum_probs=107.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+....+ +.|+++||||.|+.+
T Consensus 47 ~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~ 125 (182)
T cd04172 47 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDL 125 (182)
T ss_pred EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcCh
Confidence 4688899999999999999999999999999999999999999999997 799999987765 689999999999853
Q ss_pred ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHH
Q 031238 79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIY 121 (163)
Q Consensus 79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~ 121 (163)
.+.++.++++++++.+++ +|+++||++|+| ++++|+.+++..+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 126 TTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 246889999999999996 899999999998 9999999988643
No 27
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=2.3e-26 Score=168.44 Aligned_cols=123 Identities=25% Similarity=0.475 Sum_probs=106.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.|.||||+|++.|..++..+|+++|++|+|||++++++|+.+. .|...+....+ +.|+++||||+|+.+.
T Consensus 43 ~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 43 EIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKLDMRTDL 121 (222)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECcccccch
Confidence 56888999999999999999999999999999999999999999999984 67766655544 7999999999998542
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHHHHh
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIYHIIS 125 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~~ 125 (163)
.+++.++++.+++..++ +|+++||+++++ ++++|+.++...+....
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 24778899999999995 899999999985 99999999998766443
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=1.5e-26 Score=164.20 Aligned_cols=118 Identities=34% Similarity=0.633 Sum_probs=106.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+....+ +.|+++||||+|+.+.+
T Consensus 43 ~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 43 SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDK 121 (176)
T ss_pred EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccCh
Confidence 4688899999999999999999999999999999999999999999998 689999877654 79999999999996543
Q ss_pred ----------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 ----------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..++++.+++..+. .|+++||++|.||+++|+.+++.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 4788899999999987 699999999999999999999865
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=7.9e-26 Score=158.58 Aligned_cols=121 Identities=50% Similarity=0.861 Sum_probs=110.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++++...+..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||+|+...+.
T Consensus 45 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~ 124 (166)
T cd04122 45 EVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD 124 (166)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 45778899999999999999999999999999999999999999999999999988776555789999999999987788
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+++..+++..+++++++||++|.|++++|..+++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 125 VTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 88889999999889999999999999999999999987753
No 30
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=4.4e-26 Score=163.71 Aligned_cols=119 Identities=30% Similarity=0.589 Sum_probs=105.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+. .|...+....+ +.|+++||||.||.+.
T Consensus 45 ~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~ 123 (191)
T cd01875 45 AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDA 123 (191)
T ss_pred EECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcCh
Confidence 46888899999999999999999999999999999999999999999996 68887766544 6999999999999643
Q ss_pred -----------ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.+..++++.+++.++ .+|+++||++|.|++++|+++++.+.
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 2366788899999888 58999999999999999999997764
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=7.5e-26 Score=159.99 Aligned_cols=121 Identities=30% Similarity=0.498 Sum_probs=109.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.++||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 44 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~ 123 (172)
T cd04141 44 RIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR 123 (172)
T ss_pred EECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC
Confidence 4678889999999999999999999999999999999999999999999988887766533 479999999999997778
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.++.++++.+++.++++++++||++|.|++++|+++++.+..
T Consensus 124 ~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 124 QVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred ccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 888889999999899999999999999999999999987765
No 32
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-26 Score=156.05 Aligned_cols=122 Identities=44% Similarity=0.748 Sum_probs=112.3
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+.++|+++++++|||+|+++|+++...||+.++++|+|||++..++|+-+..|+.++..+.+..+--|+||||.|+.+.+
T Consensus 49 vev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 49 VEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred EEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh
Confidence 46799999999999999999999999999999999999999999999999999999999988777779999999998888
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+++...++++.+.....++++||++..|++.+|..+.-.+..
T Consensus 129 evp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 129 EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence 998888999998877789999999999999999988865544
No 33
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.3e-26 Score=152.95 Aligned_cols=135 Identities=49% Similarity=0.764 Sum_probs=124.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.++++.++|++|||+|+++|++..+.||+++-+.++|||+++.++|+++-.|+..++...+.++-++++|||.||..+++
T Consensus 52 nVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~ 131 (214)
T KOG0086|consen 52 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPERE 131 (214)
T ss_pred eecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhh
Confidence 46789999999999999999999999999999999999999999999999999999988887889999999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhcc
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASA 136 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 136 (163)
++..+...++.+..+-++++||.+|+|++|.|-...+.++.++...++-+++...
T Consensus 132 VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gs 186 (214)
T KOG0086|consen 132 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMGS 186 (214)
T ss_pred hhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHccc
Confidence 9999999999999999999999999999999999999998887766665555433
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=6.4e-26 Score=161.23 Aligned_cols=119 Identities=25% Similarity=0.530 Sum_probs=106.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+ ..|+..+....+ +.|+++||||.||.+
T Consensus 43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 43 EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDL 121 (178)
T ss_pred EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcCh
Confidence 4688899999999999999999999999999999999999999999996 799999987765 689999999999853
Q ss_pred ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHH
Q 031238 79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIY 121 (163)
Q Consensus 79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~ 121 (163)
.+.+..++++++++.+++ .|+++||++|+| ++++|..+++..+
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 245888999999999997 899999999995 9999999998543
No 35
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=149.03 Aligned_cols=126 Identities=50% Similarity=0.836 Sum_probs=117.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+.|.++++++|||+|+++|+...+.||+++-+.++|||++....++.+..|+...+...+.+-.++++|||.||+..++
T Consensus 54 evsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 54 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred EecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 56789999999999999999999999999999999999999999999999999998888776778899999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
+..++.++++++.|+-++++||++|.|+++.|-....++++.....
T Consensus 134 v~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdg 179 (215)
T KOG0097|consen 134 VTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG 179 (215)
T ss_pred CcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999988888888776543
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=99.94 E-value=3.3e-25 Score=158.85 Aligned_cols=123 Identities=36% Similarity=0.610 Sum_probs=110.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++|||+|++++..++..+++++|++|+|||++++++|+.+..|+..+..... .+.|+++|+||.|+.+.+
T Consensus 47 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 47 VIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126 (189)
T ss_pred EECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 4678889999999999999999999999999999999999999999999999998877643 478999999999997667
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+..+++..+++.++.+++++||+++.|++++|+++++.+....
T Consensus 127 ~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 127 QVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYL 170 (189)
T ss_pred ccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 77777888888888889999999999999999999999886653
No 37
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=5.9e-25 Score=160.19 Aligned_cols=121 Identities=48% Similarity=0.837 Sum_probs=109.4
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~ 82 (163)
++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+++..|+..+..... ...|+++|+||.|+.+.+.+
T Consensus 48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v 127 (211)
T cd04111 48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV 127 (211)
T ss_pred CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc
Confidence 46678999999999999999999999999999999999999999999999999877644 45788999999999877788
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
..+++..+++.+++.++++||+++.|++++|++|.+.+....
T Consensus 128 ~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 128 TREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999887664
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.94 E-value=3.3e-25 Score=161.91 Aligned_cols=118 Identities=30% Similarity=0.521 Sum_probs=107.4
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcccccC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~~~~ 82 (163)
..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+..... .+.|+++|+||.|+...+.+
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 578999999999999999999999999999999999999999999999999887643 35689999999999777788
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
..++...+++..+++++++||++|+|++++|+++...+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 128 KDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 88889999998899999999999999999999999988765
No 39
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=2.1e-25 Score=160.67 Aligned_cols=115 Identities=25% Similarity=0.482 Sum_probs=101.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.++||||+|++. .+...+++++|++|+|||++++.||+.+. .|+..+....+ +.|+++||||+||.+
T Consensus 60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~ 136 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYAD 136 (195)
T ss_pred eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 4688899999999999975 34567899999999999999999999996 69888876654 689999999999853
Q ss_pred -----------------cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 79 -----------------LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 79 -----------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+.++.++++.+++.++++|+++||++|+|++++|+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36788999999999999999999999999999999998763
No 40
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=8.6e-25 Score=152.43 Aligned_cols=120 Identities=35% Similarity=0.730 Sum_probs=113.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++.+..++..+++++|++|+|||+++++||+.+..|+..+....+.+.|++|+|||.|+.+.+.
T Consensus 42 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 42 SIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp EETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 46789999999999999999999999999999999999999999999999999999988776699999999999987789
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
++.++++.+++.++++|+++||+++.|+.++|..+++.+.
T Consensus 122 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 122 VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998875
No 41
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.93 E-value=9.6e-25 Score=157.75 Aligned_cols=118 Identities=31% Similarity=0.574 Sum_probs=104.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.++++.+.+.||||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.+... ++|+++||||+|+.. +.
T Consensus 38 ~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~ 115 (200)
T smart00176 38 HTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RK 115 (200)
T ss_pred EECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-cc
Confidence 3577889999999999999999999999999999999999999999999999999987754 799999999999854 44
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+. ..+++..++.|+++||++|.|++++|++++..+..
T Consensus 116 v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 116 VKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred CCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 55444 35777788999999999999999999999988855
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1e-24 Score=152.49 Aligned_cols=118 Identities=39% Similarity=0.754 Sum_probs=107.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++++..++..+++++|++++|||++++.+|+.+..|+..+......+.|+++|+||.|+.+.+.
T Consensus 43 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 43 EVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred EECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 35677789999999999999999999999999999999999999999999999998876555799999999999987788
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+..+++..+++..+.+|+++||++|.|++++|.+|.+.
T Consensus 123 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 88889999999889999999999999999999999764
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.5e-24 Score=152.32 Aligned_cols=121 Identities=50% Similarity=0.897 Sum_probs=109.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++.+..++..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||.|+.+.+.
T Consensus 46 ~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~ 125 (167)
T cd01867 46 ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV 125 (167)
T ss_pred EECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccC
Confidence 45778889999999999999999999999999999999999999999999999999876555799999999999987677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+++..++..++.+++++||+++.|++++|+++.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 126 VSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 77888888888888999999999999999999999988754
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=1.6e-24 Score=153.72 Aligned_cols=118 Identities=46% Similarity=0.804 Sum_probs=107.0
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~ 83 (163)
+..+.+.||||+|++++..++..+++++|++|+|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence 4568899999999999999999999999999999999999999999999999876543 468999999999997777788
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+++..+++..+++++++||+++.|++++|+++++.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999987764
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=6.7e-25 Score=155.54 Aligned_cols=118 Identities=25% Similarity=0.496 Sum_probs=103.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+++|||+|++++..++..+++++|++|+|||++++++|+.+. .|+..+....+ ++|+++||||.|+...
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 43 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDP 121 (175)
T ss_pred EECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhCh
Confidence 45788899999999999999999999999999999999999999999996 58888876544 6899999999998543
Q ss_pred -----------ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+..++++.+++..+ ..|+++||++|+|++++|+.++...
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4677788888988887 6899999999999999999988743
No 46
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=2e-24 Score=154.22 Aligned_cols=119 Identities=34% Similarity=0.568 Sum_probs=103.8
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc----
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL---- 79 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~---- 79 (163)
+..+.+.+|||+|++++..++..+++++|++|+|||++++++|+++. .|+..+....+ +.|+++|+||.|+...
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~ 124 (187)
T cd04132 46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCP-GTPIMLVGLKTDLRKDKNLD 124 (187)
T ss_pred CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhhhCcccc
Confidence 67789999999999999999999999999999999999999999985 68877765543 6899999999998543
Q ss_pred ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+.+..+++++++...++ +++++||++|.|++++|+.+++.+....
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 125 RKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 24667888889988888 8999999999999999999998887543
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=1.9e-24 Score=151.37 Aligned_cols=120 Identities=51% Similarity=0.848 Sum_probs=109.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++++..++..+++++|++|+|||++++++|.++..|+..+......+.|+++|+||.|+...+.
T Consensus 45 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~ 124 (166)
T cd01869 45 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV 124 (166)
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccC
Confidence 35677889999999999999999999999999999999999999999999999998776545689999999999977777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..+++..++...+++++++||++|.|++++|+.+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 125 VDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 8888888899888999999999999999999999998775
No 48
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=1e-24 Score=156.28 Aligned_cols=119 Identities=29% Similarity=0.549 Sum_probs=103.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+. .|+..+..... +.|+++|+||+|+...+
T Consensus 42 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 42 FVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREAR 120 (189)
T ss_pred EECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCh
Confidence 35778899999999999999999999999999999999999999999886 68888876554 78999999999986533
Q ss_pred ------------cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 ------------AVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..+++..+++..+ +.|+++||++|.|++++|+++.+.+.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 345667778887776 68999999999999999999998775
No 49
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=2.3e-24 Score=151.03 Aligned_cols=120 Identities=44% Similarity=0.776 Sum_probs=107.8
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.++..+.+++|||+|++++..++..+++++|++++|||++++++++.+..|+..+.......+|+++|+||+|+.+.+.+
T Consensus 45 ~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 124 (165)
T cd01865 45 RNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVV 124 (165)
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccccc
Confidence 35677899999999999999999999999999999999999999999999999987766557899999999999776777
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++..+++...+++++++||+++.|++++|+++...+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 125 SSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7788888888888999999999999999999999887643
No 50
>PLN03108 Rab family protein; Provisional
Probab=99.93 E-value=4.9e-24 Score=155.24 Aligned_cols=124 Identities=53% Similarity=0.916 Sum_probs=111.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+........|+++|+||.|+...+.
T Consensus 49 ~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 49 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 128 (210)
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccC
Confidence 45777889999999999999999999999999999999999999999999999888766555799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+..++++++++.++++++++||+++.|++++|+++++.+++...
T Consensus 129 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 129 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999998876543
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=1.4e-24 Score=151.27 Aligned_cols=119 Identities=34% Similarity=0.586 Sum_probs=106.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.++||||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 43 EVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred EECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 4578888999999999999999999999999999999999999999999999998877543 478999999999997666
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..++...+++.++.+++++||+++.|++++|+++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 123 VVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred eecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 7777778888888888999999999999999999998754
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=1.9e-24 Score=151.12 Aligned_cols=119 Identities=34% Similarity=0.577 Sum_probs=106.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (164)
T cd04175 43 EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122 (164)
T ss_pred EECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc
Confidence 4577888999999999999999999999999999999999999999999999999876543 579999999999997767
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..+++..+++..+++++++||+++.|++++|+++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 123 VVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7777778888888889999999999999999999998765
No 53
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=5.2e-24 Score=152.81 Aligned_cols=123 Identities=34% Similarity=0.599 Sum_probs=106.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL-- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~-- 79 (163)
.+++..+.+.+||++|++++..++..+++++|++++|||++++.+++.+..|+..+..... +.|+++|+||.|+.+.
T Consensus 44 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~ 122 (193)
T cd04118 44 VVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDR 122 (193)
T ss_pred EECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEccccccccc
Confidence 4577888999999999999999999999999999999999999999999999998876543 6899999999998532
Q ss_pred --ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 80 --RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+.+..+++..++...+++++++||+++.|++++|+++.+.+.+...
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 123 SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3455567777888888899999999999999999999998876443
No 54
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=9.8e-24 Score=153.65 Aligned_cols=122 Identities=45% Similarity=0.748 Sum_probs=105.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH-HHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+...
T Consensus 56 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 56 TVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 356778899999999999999999999999999999999999999999875 5555544332 46899999999999776
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+..++...++...++.|+++||+++.|++++|++|...+...
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 136 RDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 77777888888888889999999999999999999999988664
No 55
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=2.2e-24 Score=152.80 Aligned_cols=117 Identities=32% Similarity=0.585 Sum_probs=103.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+++. .|+..+....+ ++|+++||||.|+.+.
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 43 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 121 (174)
T ss_pred EECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccCh
Confidence 46788899999999999999999999999999999999999999999985 68887766544 7999999999998542
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+.+..++++.+++..+. +++++||++|+|++++|+.++..
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 34778889999998884 89999999999999999998763
No 56
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=4.2e-24 Score=152.38 Aligned_cols=120 Identities=23% Similarity=0.462 Sum_probs=102.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH--- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~--- 78 (163)
.+++..+.+++|||+|++.|..++..+++++|++++|||++++.+|+++..|+..+........| ++||||+|+..
T Consensus 43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~ 121 (182)
T cd04128 43 SIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLP 121 (182)
T ss_pred EECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccccc
Confidence 45788899999999999999999999999999999999999999999999999998876554567 57899999842
Q ss_pred --cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 79 --LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
......++++.+++.++.+++++||++|.|++++|+++++.+..
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 122 PEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred chhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11122456778888888999999999999999999999988865
No 57
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=1.2e-23 Score=147.86 Aligned_cols=121 Identities=55% Similarity=0.939 Sum_probs=109.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+||++|++++..++..+++++|++++|||++++++++.+..|+..+......+.|+++|+||.|+.+.+.
T Consensus 47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 126 (168)
T cd01866 47 TIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRRE 126 (168)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccC
Confidence 35777889999999999999999999999999999999999999999999999998776545799999999999976677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+++..++...++.++++||++++|++++|.++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 127 VSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 78888888888889999999999999999999999988754
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=8.5e-24 Score=147.68 Aligned_cols=120 Identities=37% Similarity=0.707 Sum_probs=107.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-----CCCeEEEEeeCCCC
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-----SNIVIMMAGNKSDL 76 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piivv~nK~Dl 76 (163)
.+++..+.+++|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 43 SVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 3467788999999999999999999999999999999999999999999999999987643 36899999999999
Q ss_pred cccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
...+.+..++.+.++...+++++++||+++.|++++|++|++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 123 TKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 755667788888888888899999999999999999999998765
No 59
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=1.3e-23 Score=146.98 Aligned_cols=119 Identities=78% Similarity=1.190 Sum_probs=107.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++++..++..++++++++|+|||++++.+++.+..|+..+......++|+++|+||.|+...+.
T Consensus 46 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~ 125 (165)
T cd01868 46 QIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 125 (165)
T ss_pred EECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 35677789999999999999999999999999999999999999999999999998877665699999999999977777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..++...++...+++++++||++|.|++++|++++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 126 VPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 778888888888889999999999999999999998764
No 60
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=6.1e-24 Score=148.34 Aligned_cols=119 Identities=30% Similarity=0.515 Sum_probs=105.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.++||||+|++++..++..+++++|++|+|||++++.+|+++..|+..+..... .++|+++|+||+|+...+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 43 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred EECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 4577888999999999999999999999999999999999999999999999988877643 579999999999997666
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+...+...+++..+.+++++||+++.|++++|.++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 123 EVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 6777777888887888999999999999999999998654
No 61
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.92 E-value=5.6e-24 Score=150.03 Aligned_cols=119 Identities=33% Similarity=0.576 Sum_probs=104.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+.+. .|+..+....+ ++|+++|+||+|+...
T Consensus 40 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~ 118 (174)
T smart00174 40 EVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDK 118 (174)
T ss_pred EECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhCh
Confidence 45788899999999999999999999999999999999999999999985 68888877654 7999999999998642
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.+..++++.+++..+. .++++||+++.|++++|+.+++.++
T Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 119 STLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred hhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 23677888889999886 8999999999999999999998764
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=1.6e-23 Score=146.29 Aligned_cols=120 Identities=40% Similarity=0.645 Sum_probs=106.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++++..++..+++++|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+
T Consensus 42 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 42 EIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred EECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 3577889999999999999999999999999999999999999999999999888876543 468999999999997766
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..+.+..+++..+.+++++||+++.|++++|+++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 122 VVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred eEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 67777888888888899999999999999999999998764
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=1.6e-23 Score=146.14 Aligned_cols=119 Identities=36% Similarity=0.617 Sum_probs=106.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+...+
T Consensus 44 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 44 EIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred EECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence 3677788999999999999999999999999999999999999999999999988876533 478999999999997766
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..+++..+++..+++++++||++|.|++++|+++++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 124 KVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred eecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 6777788888888889999999999999999999998764
No 64
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=2e-23 Score=146.19 Aligned_cols=118 Identities=53% Similarity=0.856 Sum_probs=105.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++|+++|+||+|+.+.++
T Consensus 46 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 46 EIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE 125 (165)
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 35677789999999999999999999999999999999999999999999999999876555799999999999977777
Q ss_pred CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+..+.+..+++..+. .++++||++|.|++++|+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 126 VLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 788888889888876 68999999999999999999864
No 65
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.2e-23 Score=154.15 Aligned_cols=117 Identities=32% Similarity=0.564 Sum_probs=102.9
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+....+ ++|+++||||+|+.. +.+
T Consensus 57 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v 134 (219)
T PLN03071 57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQV 134 (219)
T ss_pred ECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccC
Confidence 456778999999999999999999999999999999999999999999999999987654 699999999999854 444
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+++ .+++..+++|+++||++|.|++++|++|++.+..
T Consensus 135 ~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 135 KAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 45555 6777778899999999999999999999988764
No 66
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=2.2e-23 Score=145.24 Aligned_cols=118 Identities=54% Similarity=0.848 Sum_probs=107.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++.+..++..+++++|++|+|||++++.++..+..|+..+......++|+++++||.|+...+.
T Consensus 43 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 43 RVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE 122 (161)
T ss_pred EECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc
Confidence 35677789999999999999999999999999999999999999999999999988766555799999999999977677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+..++...+++..++.++++||+++.|++++|+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 123 VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 78888888999889999999999999999999999875
No 67
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.91 E-value=3.8e-23 Score=145.90 Aligned_cols=121 Identities=31% Similarity=0.587 Sum_probs=104.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++|||+|+++|..++..+++++|++++|||++++++++.+..|+..+.+.. +...|+++|+||.|+.+.+
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 43 EILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred EECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 356778899999999999999999999999999999999999999999999999886543 3457899999999986543
Q ss_pred c--CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 A--VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+ ...+++..+++..+.+++++||++|.|++++|+.++..+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3 34566777888888899999999999999999999887754
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=2.4e-23 Score=145.03 Aligned_cols=114 Identities=32% Similarity=0.609 Sum_probs=103.5
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
+..+.+++|||+|++++..++..+++++|++++|||++++++++.+..|+..+..... ++|+++|+||.|+...+.+..
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~ 126 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITN 126 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCH
Confidence 5678899999999999999999999999999999999999999999999998876554 699999999999977677788
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+++..+++..+++++++||+++.|++++|++|...
T Consensus 127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 127 EEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 88888999999999999999999999999998753
No 69
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=4.9e-23 Score=143.50 Aligned_cols=121 Identities=61% Similarity=0.989 Sum_probs=108.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|++.+...+..+++.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+....+
T Consensus 43 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 43 EVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC
Confidence 35677789999999999999999999999999999999999999999999999998877655799999999999876667
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+.++.+++..+++++++||+++.|++++|+++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 123 VSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 77888888888889999999999999999999999988743
No 70
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=2.8e-23 Score=145.54 Aligned_cols=116 Identities=28% Similarity=0.423 Sum_probs=102.7
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~ 79 (163)
.++..+.+.+|||+|++++..++..+++++|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+...
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 123 (165)
T cd04140 44 CSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK 123 (165)
T ss_pred ECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence 466778999999999999999999999999999999999999999999999887766432 46899999999999766
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+.+..+++..++..++++++++||++|.|++++|++|+.
T Consensus 124 ~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 124 REVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 777777888888888889999999999999999999874
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=7.6e-23 Score=142.06 Aligned_cols=118 Identities=36% Similarity=0.652 Sum_probs=103.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++++..|+..+.+... .++|+++|+||+|+.. +
T Consensus 43 ~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~ 121 (162)
T cd04138 43 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-R 121 (162)
T ss_pred EECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-c
Confidence 3567778899999999999999999999999999999999999999999999988877643 4789999999999865 4
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..++...+++..+.+++++||++|.|++++|+++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 5567778888888889999999999999999999998654
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=3.3e-23 Score=144.61 Aligned_cols=113 Identities=20% Similarity=0.382 Sum_probs=98.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCc--c
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLN--H 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~--~ 78 (163)
.+++..+.+.+|||+|++. ..+++++|++++|||++++.||+++..|+..+..... .+.|+++||||.|+. .
T Consensus 41 ~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 41 LVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred EECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 5678889999999999975 3467899999999999999999999999999987754 468999999999984 3
Q ss_pred cccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+.+..++++++++.. ++.|++|||+++.||+++|+.+.+.
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 4678888888898876 4899999999999999999998754
No 73
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=6.1e-23 Score=144.24 Aligned_cols=117 Identities=32% Similarity=0.602 Sum_probs=101.5
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.++..+.+.+|||+|++.+..++..++..+|++|+|||+++++++..+..|+..+..... ++|+++|+||+|+.+ +.+
T Consensus 44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~ 121 (166)
T cd00877 44 TNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKV 121 (166)
T ss_pred ECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccC
Confidence 356778999999999999999999999999999999999999999999999999988765 799999999999963 333
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.. +...+++..+++++++||++|.|++++|++|++.+.+
T Consensus 122 ~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 122 KA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 33 3445666777899999999999999999999988754
No 74
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=8.4e-23 Score=143.57 Aligned_cols=117 Identities=38% Similarity=0.669 Sum_probs=103.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~ 77 (163)
.+++..+.++|||++|++++..++..+++++|++|+|||++++++++.+..|...+..... .++|+++|+||.|+.
T Consensus 48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 48 EVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 3678889999999999999999999999999999999999999999999999988866432 468999999999986
Q ss_pred ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+.+..++++++++.++. +++++||+++.|++++|+.+++.
T Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 128 -ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred -ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 466778888899988874 89999999999999999999864
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=1.1e-22 Score=143.34 Aligned_cols=119 Identities=32% Similarity=0.640 Sum_probs=106.0
Q ss_pred eecCEEEEEEEEeCCChhhHh-hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.+|||+|++++. .++..+++++|++++|||++++.++..+..|+..+..... .++|+++|+||+|+...
T Consensus 45 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 45 EIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred EECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 457788999999999999886 5788899999999999999999999999999998877643 57999999999999877
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALE---ATNVEKAFQTILTEI 120 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~~~ 120 (163)
+.+..++++.+++..+++|+++||++ +.+++++|..+++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 125 IQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 78888888889988889999999999 889999999998765
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=8.7e-23 Score=142.64 Aligned_cols=118 Identities=36% Similarity=0.610 Sum_probs=101.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....+ ++|+++|+||.|+...
T Consensus 43 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~-- 119 (161)
T cd04124 43 KFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS-- 119 (161)
T ss_pred EECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh--
Confidence 3577889999999999999999999999999999999999999999999999999876544 6899999999998421
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
..++...+++..+++++++||++|.|++++|+.+++.+.++
T Consensus 120 -~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 120 -VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred -HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 23445566777788999999999999999999999877653
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=1.4e-22 Score=140.99 Aligned_cols=117 Identities=43% Similarity=0.770 Sum_probs=105.1
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+++||+||+..+..++..+++++|++|+|||++++++|+.+..|+..+....+.+.|+++++||.|+...+..
T Consensus 44 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~ 123 (161)
T cd01861 44 LEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV 123 (161)
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc
Confidence 56677899999999999999999999999999999999999999999999999887665556999999999999666667
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
..++...+++..+++++++||+++.|++++|+++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 124 STEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 7888888888888999999999999999999999864
No 78
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=148.80 Aligned_cols=122 Identities=34% Similarity=0.635 Sum_probs=109.8
Q ss_pred Cee-cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 1 MIV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 1 ~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
+.+ +|+.+.+.+|||+|+++|+.++...|.++|++++||++.++.||+++ ..|+.++....+ +.|+|+||+|.||.+
T Consensus 45 v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 45 VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRD 123 (198)
T ss_pred EEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhh
Confidence 356 49999999999999999999888899999999999999999999998 599999999987 799999999999953
Q ss_pred ------------cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 79 ------------LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 79 ------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
...+..+++..+++..| ..|++|||+++.|++++|+..+...+..
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 24678899999999998 4899999999999999999999887653
No 79
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=1.9e-22 Score=140.77 Aligned_cols=115 Identities=31% Similarity=0.591 Sum_probs=102.6
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
+..+.+.+|||+|++.+..++..+++++|++++|||++++++++++..|+..+..... +.|+++|+||.|+.....+..
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~ 127 (164)
T cd04101 49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK-HMPGVLVGNKMDLADKAEVTD 127 (164)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccCCCH
Confidence 5678999999999999999999999999999999999999999999999998877653 689999999999977677777
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
...+.+....+++++++||+++.|++++|+.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 128 AQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 677777777788999999999999999999998765
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=3.2e-22 Score=139.47 Aligned_cols=119 Identities=45% Similarity=0.806 Sum_probs=107.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+||++|++++...+..+++++|++|+|||++++++++....|+..+.......+|+++++||.|+...+.
T Consensus 44 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 123 (163)
T cd01860 44 NLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ 123 (163)
T ss_pred EECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc
Confidence 46778899999999999999999999999999999999999999999999999998877655799999999999876666
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
...++...++...++.++++||++|.|++++|+++++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 124 VSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 777788888888889999999999999999999998875
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=1.5e-22 Score=141.71 Aligned_cols=120 Identities=36% Similarity=0.551 Sum_probs=103.3
Q ss_pred eecCEEEEEEEEeCCChhh-HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCeEEEEeeCCCCcc
Q 031238 2 IVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA--DSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~ 78 (163)
.++++.+.+++||++|+.. .......+++++|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+..
T Consensus 41 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 41 TIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred EECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 4678889999999999985 34456778999999999999999999999999988887654 24699999999999977
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCC-CCHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEA-TNVEKAFQTILTEIY 121 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l~~~~~ 121 (163)
.+.+..+++..+++..+.+|+++||+++ .|++++|+.+++.+.
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 121 YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 6777888888899888999999999999 599999999987653
No 82
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=1.2e-22 Score=143.40 Aligned_cols=116 Identities=31% Similarity=0.607 Sum_probs=101.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.+++|||+|++++..++..+++++|++|+|||++++.+|+.+. .|+..+..... +.|+++++||.|+..
T Consensus 42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 120 (173)
T cd04130 42 LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDV 120 (173)
T ss_pred EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccCh
Confidence 46777889999999999999999999999999999999999999999885 68888775433 689999999999853
Q ss_pred ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238 79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
.+.+..+++..+++..+. .++++||++|.|++++|+.++.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 356677888889998887 8999999999999999998764
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=2.3e-22 Score=141.28 Aligned_cols=120 Identities=33% Similarity=0.573 Sum_probs=106.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++|||+|+++|..+++.+++.++++++|||++++++++.+..|...+..... .+.|+++++||.|+...+
T Consensus 43 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 43 EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 3567788999999999999999999999999999999999999999999999888876533 479999999999997767
Q ss_pred cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..++...+++..+ ++++++||+++.|++++|++++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 123 QVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred ccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 777778888888877 78999999999999999999997664
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.90 E-value=2.6e-22 Score=149.36 Aligned_cols=119 Identities=22% Similarity=0.421 Sum_probs=103.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---------cCCCCeEEEEee
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---------ADSNIVIMMAGN 72 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~~~~~piivv~n 72 (163)
.+++..+.+.||||+|++.|..++..++.++|++|+|||++++++|+++..|+..+... ...++|+|+|+|
T Consensus 42 ~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 42 SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 46788899999999999999988888999999999999999999999999998888654 123689999999
Q ss_pred CCCCcccccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 73 KSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 73 K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
|+|+...+.+..+++.+++.. .++.++++||+++.|++++|++|+...
T Consensus 122 K~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 122 KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999976567777788777654 357899999999999999999999754
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=5.2e-22 Score=137.83 Aligned_cols=118 Identities=40% Similarity=0.737 Sum_probs=106.1
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.+||++|++.+..++..+++++|++++|||++++++++.+..|+..+......++|+++++||+|+...+.+
T Consensus 44 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~ 123 (162)
T cd04123 44 IGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVV 123 (162)
T ss_pred ECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC
Confidence 35677889999999999999999999999999999999999999999999999988776657999999999999876777
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+++..+++..+.+++++||+++.|++++|+++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 124 SKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 77888888888889999999999999999999998765
No 86
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=144.32 Aligned_cols=121 Identities=37% Similarity=0.582 Sum_probs=112.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.++||+|++.+..+...+++++|++++||++++..||+.+..++..+.+... ..+|+++||||+|+...+
T Consensus 45 ~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 45 TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER 124 (196)
T ss_pred EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc
Confidence 5789999999999999999999999999999999999999999999999999999966544 568999999999998889
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.++.++++.++..++++|+++||+.+.+++++|..|++.+..
T Consensus 125 ~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 125 QVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988765
No 87
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=3.9e-22 Score=143.92 Aligned_cols=139 Identities=24% Similarity=0.307 Sum_probs=109.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcc-c
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNH-L 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~-~ 79 (163)
.+++..+.++|||++|+..+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||.|+.. .
T Consensus 41 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 41 EVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred EECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 3567778999999999999999999999999999999999999999999999988877654 4699999999999864 3
Q ss_pred ccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCC
Q 031238 80 RAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTAL 140 (163)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 140 (163)
+.+..+...+... ..+..++++||++|.|++++|+++++.+.......+...++...++.+
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSPALRRRRESLPSE 182 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccchhhHHHHhhccHh
Confidence 4455544444433 445789999999999999999999998765444444444444444444
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=3.8e-22 Score=146.36 Aligned_cols=123 Identities=26% Similarity=0.330 Sum_probs=105.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhc-CCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYR-GAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.+|||+|++ ......+++ ++|++++|||++++.+|+.+..|+..+..... .++|+|+|+||+|+...
T Consensus 44 ~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 44 SVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred EECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence 457788899999999998 334455667 99999999999999999999999998877643 47999999999999777
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
+.+..++++.++..++++++++||+++.|++++|++++..+......
T Consensus 122 ~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 122 REVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS 168 (221)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 77777888888888889999999999999999999999988765444
No 89
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=8.9e-22 Score=142.15 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=99.8
Q ss_pred eecCEEEEEEEEeCCChhhHh--------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc---CCCCeEEEE
Q 031238 2 IVEGKTVKAQIWDTAGQERYR--------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA---DSNIVIMMA 70 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv 70 (163)
.+++..+.+.||||+|...+. ......++++|++|+|||++++.||+.+..|+..+.... ..++|+++|
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiiv 122 (198)
T cd04142 43 VLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVV 122 (198)
T ss_pred EECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 467888999999999965431 123345789999999999999999999999998887754 347999999
Q ss_pred eeCCCCcccccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 71 GNKSDLNHLRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 71 ~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+||+|+.+.+.+..++++.++. .++++|+++||++|.|++++|+.+++.+...
T Consensus 123 gNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 123 GNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred EECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 9999997666666777776654 5578999999999999999999999877654
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.88 E-value=8.7e-22 Score=138.80 Aligned_cols=118 Identities=30% Similarity=0.514 Sum_probs=102.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+. .|+..+... ..++|+++|+||+|+.+.
T Consensus 42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 42 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcCh
Confidence 45777888999999999999999999999999999999999999999885 687777665 347999999999998543
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+..++++.+++..+. +++++||++|.|++++|+.++..+
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 121 KTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 25667788888888886 799999999999999999998765
No 91
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=8.2e-22 Score=140.44 Aligned_cols=117 Identities=18% Similarity=0.312 Sum_probs=91.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~ 82 (163)
+...+.+++||++|++.++.++..+++++|++|+|||+++++++.++..++..+..... .+.|++|++||.|+.+. .
T Consensus 57 ~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~ 134 (181)
T PLN00223 57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M 134 (181)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--C
Confidence 44567899999999999999999999999999999999999999988877777654321 46899999999998643 2
Q ss_pred CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++......... +.++++||++|+|++++|++|.+.+..
T Consensus 135 ~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 3333333222111 235689999999999999999888754
No 92
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=2.6e-21 Score=135.65 Aligned_cols=119 Identities=40% Similarity=0.739 Sum_probs=104.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+||++|+..+...+..+++.+|++++|||++++.+++.+..|+..+......++|+++|+||.|+...++
T Consensus 50 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 50 EIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 35777889999999999999998899999999999999999999999999999888776655799999999999977677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..+..+.+.+.....++++||++|.|++++|+++.+.+
T Consensus 130 i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 130 VSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred cCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 777777777777778899999999999999999998754
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=2.3e-21 Score=134.93 Aligned_cols=116 Identities=50% Similarity=0.860 Sum_probs=103.0
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+++..+.+.+||++|++.+...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. ..
T Consensus 44 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~ 122 (161)
T cd01863 44 VDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-RE 122 (161)
T ss_pred ECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cc
Confidence 567778999999999999999999999999999999999999999999899998877654 5799999999999863 45
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
...++...++...+++++++||++|.|++++|+.+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 123 VTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 56777888888889999999999999999999998865
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=3.8e-21 Score=135.04 Aligned_cols=122 Identities=40% Similarity=0.668 Sum_probs=105.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~ 77 (163)
.+++..+.+.+||++|++.+..++..+++++|++|++||++++.+++++..|...+..... .++|+++|+||.|+.
T Consensus 43 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 43 TVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 4577788999999999999999999999999999999999999999988888877655432 368999999999997
Q ss_pred ccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
..+.+..++...+++..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 123 EKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 556667788888888887 6999999999999999999999887664
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=3.5e-21 Score=133.99 Aligned_cols=120 Identities=38% Similarity=0.616 Sum_probs=105.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+||++|+..+...+..+++.+|++++|||++++.++..+..|+..+..... .++|+++|+||+|+.+..
T Consensus 42 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 121 (164)
T cd04139 42 VLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR 121 (164)
T ss_pred EECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence 3577889999999999999999999999999999999999999999999999888887643 479999999999997645
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.........++..++++++++||+++.|++++|+.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 122 QVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 55667777788888899999999999999999999988764
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.88 E-value=6.1e-22 Score=139.46 Aligned_cols=112 Identities=21% Similarity=0.348 Sum_probs=91.7
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+..+.+++|||+|++++..++..+++++|++|+|||++++.+++++..|+..+.... ..++|+++|+||+|+.+ .+.
T Consensus 50 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~ 127 (168)
T cd04149 50 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMK 127 (168)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCC
Confidence 445789999999999999999999999999999999999999999988887776532 24689999999999853 245
Q ss_pred HHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 84 EEDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 84 ~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
.++++.+... ....++++||++|.|++++|++|.+
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 128 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 5666655422 1246899999999999999999864
No 97
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.88 E-value=2.8e-21 Score=138.25 Aligned_cols=120 Identities=30% Similarity=0.557 Sum_probs=101.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.+.+||++|++.+......+++++|+++++||+++.++|+++. .|+..+....+ +.|+++||||.|+..
T Consensus 43 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~ 121 (187)
T cd04129 43 RVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDA 121 (187)
T ss_pred EECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCc
Confidence 35677788999999999988877777889999999999999999999986 68888876655 699999999999853
Q ss_pred --------cccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 79 --------LRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 --------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+.+..+.++.+++..+. +|+++||++|.|++++|+++.+.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 122 VAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred ccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 234556777888888885 89999999999999999999987644
No 98
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=1.9e-21 Score=136.97 Aligned_cols=117 Identities=19% Similarity=0.305 Sum_probs=96.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~ 82 (163)
+...+.+.+|||+|++.+...+..+++++|++++|||++++++++++..|+..+..... .+.|+++|+||+|+.+ .+
T Consensus 39 ~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~ 116 (169)
T cd04158 39 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--AL 116 (169)
T ss_pred EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CC
Confidence 44567899999999999999999999999999999999999999999999888875432 4589999999999853 35
Q ss_pred CHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEG------LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++++.++...+ +.++++||++|.|++++|++|.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 117 SVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 6666766654322 257899999999999999999877654
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=4.1e-22 Score=139.82 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=94.5
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.+||++|++.+..++..+++++|++|+|||++++.++..++.|+..+.... .++|+++|+||.|+...+.+
T Consensus 39 i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 39 IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCH
Confidence 45667889999999999999999999999999999999999999999998888886544 47999999999998654433
Q ss_pred CH----HHHHHHHHHcCCcEEEeccCC------CCCHHHHHHHHHH
Q 031238 83 TE----EDGHSLAEKEGLSFLETSALE------ATNVEKAFQTILT 118 (163)
Q Consensus 83 ~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~ 118 (163)
.. ..+..++++.++.++++||++ ++|++++|+.++.
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 118 QEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 21 123445566677889999888 9999999998763
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=9.3e-21 Score=131.25 Aligned_cols=118 Identities=37% Similarity=0.658 Sum_probs=105.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++||++|+..+...+..+++++|++++|||++++++++++..|+..+..... .+.|+++|+||+|+...+
T Consensus 41 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 41 VVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 3466788999999999999999999999999999999999999999999999988887765 579999999999997666
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+..+.+..++...+.+++++||+++.|++++|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 677788888888888899999999999999999999865
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=8.1e-22 Score=139.68 Aligned_cols=114 Identities=19% Similarity=0.331 Sum_probs=90.0
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~ 83 (163)
...+.+++|||+|++.+..++..+++++|++|+|||++++.++++...|+..+..... .++|++||+||.|+.+.. .
T Consensus 54 ~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~ 131 (175)
T smart00177 54 YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--K 131 (175)
T ss_pred ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--C
Confidence 3457899999999999999999999999999999999999999999888887764322 468999999999986422 2
Q ss_pred HHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 84 EEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+++.+... ...+.++++||++|.|++++|++|.+.+
T Consensus 132 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 333332221 1123477899999999999999998765
No 102
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=2.8e-21 Score=136.21 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=99.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+... .++|+++|+||+|+.+.+.
T Consensus 48 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~ 125 (169)
T cd01892 48 EVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQ 125 (169)
T ss_pred EECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccccc
Confidence 45777889999999999999989999999999999999999999999988888766432 3689999999999965554
Q ss_pred CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+...+.+.+++..++ .++++||+++.|++++|+.+.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 126 RYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 444456677777777 4799999999999999999988764
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.87 E-value=7.4e-22 Score=137.79 Aligned_cols=112 Identities=17% Similarity=0.337 Sum_probs=87.6
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~ 83 (163)
...+.+.+||++|++++..++..+++++|++|+|||++++.+++++..|+..+..... ...|+++++||.|+.+. ..
T Consensus 41 ~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 118 (159)
T cd04150 41 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MS 118 (159)
T ss_pred ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CC
Confidence 3457899999999999999999999999999999999999999999888877754322 35899999999998542 22
Q ss_pred HHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 84 EEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 84 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
.+++..... ..++.++++||++|.|++++|++|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 333222221 11335789999999999999999864
No 104
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.87 E-value=9.8e-21 Score=133.54 Aligned_cols=118 Identities=31% Similarity=0.569 Sum_probs=98.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.+|||+|++.+..++..++.++|++++|||++++++|+.+. .|...+..... ++|+++|+||.|+...
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 43 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDE 121 (175)
T ss_pred EECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccCh
Confidence 45778889999999999999988888999999999999999999998885 68877766543 6899999999998532
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+...+++.++...+. +++++||++|.|++++|+++.+.+
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 23445677777777764 899999999999999999998653
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=1.4e-20 Score=129.67 Aligned_cols=115 Identities=55% Similarity=0.936 Sum_probs=103.4
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.+||++|+..+...+..+++++|++|+|||++++++++.+..|+..+......+.|+++++||+|+......
T Consensus 44 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 123 (159)
T cd00154 44 IDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV 123 (159)
T ss_pred ECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc
Confidence 45677899999999999999999999999999999999999999999999999998876457999999999999655667
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
..+++..++...+.+++++||+++.|++++|+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 124 STEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 78888888888889999999999999999999886
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=2.2e-20 Score=133.24 Aligned_cols=117 Identities=18% Similarity=0.331 Sum_probs=94.8
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~ 83 (163)
+..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~ 126 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALS 126 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCC
Confidence 4568899999999999999999999999999999999999999888888887766533 4689999999999853 233
Q ss_pred HHHHHHHHHH--c----CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEK--E----GLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 84 ~~~~~~~~~~--~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+++..+... . +++++++||++++|++++|++|++.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 127 VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 4444444321 1 24588999999999999999999888643
No 107
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.86 E-value=4.2e-20 Score=131.00 Aligned_cols=121 Identities=39% Similarity=0.594 Sum_probs=105.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++||++|++++..++..++..++++++|||+++..+++.+..|+..+.+... .+.|+++++||+|+...+
T Consensus 43 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 43 RYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred EECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence 3466678899999999999999999999999999999999999999999998888877543 468999999999997656
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+..++...+++..+.+++++||+++.|+.++|+++.+.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 123 QVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 666667777788778899999999999999999999987754
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1.8e-20 Score=133.58 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=90.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~ 82 (163)
+...+.+.+|||+|++.++.++..+++++|++|+|||+++++++++...++..+.... ..++|+++|+||.|+.+ .+
T Consensus 57 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~ 134 (182)
T PTZ00133 57 EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AM 134 (182)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CC
Confidence 3456789999999999999999999999999999999999999998887777765432 13689999999999854 22
Q ss_pred CHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+++...... ..+.++++||++|.|++++|++|.+.+..
T Consensus 135 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 135 STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 33333222211 12346789999999999999999887654
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=5.9e-20 Score=128.83 Aligned_cols=118 Identities=27% Similarity=0.355 Sum_probs=94.4
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+++..+.+.+|||+|+..+...+..+++.+|++++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+...
T Consensus 42 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 42 VTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccc
Confidence 4567789999999999988877788899999999999999999999975 67777766544 799999999999965443
Q ss_pred CC--HHHHHHHHHHc-CC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VT--EEDGHSLAEKE-GL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~--~~~~~~~~~~~-~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.. .+++..+.... ++ .++++||+++.|++++|+.+...+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 121 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence 21 23333343333 33 7999999999999999999988765
No 110
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-21 Score=135.24 Aligned_cols=122 Identities=31% Similarity=0.498 Sum_probs=112.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+++.+.+++|||+|+++++.+...||++|.+.++||+-+|..||+.+..|++.+....+ .+|.++|-||+|+.++.++.
T Consensus 65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~ 143 (246)
T KOG4252|consen 65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMD 143 (246)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcc
Confidence 44455667999999999999999999999999999999999999999999999988877 79999999999999989999
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
..+.+.+++.....++.+|++...|+-.+|..|++.+.+....
T Consensus 144 ~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 144 KGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776544
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=3.7e-20 Score=130.72 Aligned_cols=110 Identities=23% Similarity=0.332 Sum_probs=89.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+|||+|++.+..++..+++++|++++|||++++.++.+...|+..+.... ..++|+++|+||+|+.+.. ..+
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~ 134 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHH
Confidence 4678999999999999899999999999999999999999998888887775432 2479999999999986432 345
Q ss_pred HHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 86 DGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 86 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
++..+.. ..+++++++||++|.|++++|++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 135 EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 5554442 23468999999999999999998863
No 112
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.84 E-value=8.6e-20 Score=128.00 Aligned_cols=116 Identities=33% Similarity=0.627 Sum_probs=97.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+++||++|++.+......+++.+|++++|||++++.++.... .|+..+..... ++|+++|+||+|+....
T Consensus 42 ~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 42 TVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDE 120 (171)
T ss_pred EECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhch
Confidence 34677889999999999988888888899999999999999999988764 67777766554 79999999999986543
Q ss_pred -----------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238 81 -----------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 81 -----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
.+..++...+....+. +++++||+++.|++++|+++++
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 121 NTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 2346677778888887 9999999999999999998875
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=8.3e-20 Score=127.01 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=87.8
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc---CCCCeEEEEeeCCCCccccc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA---DSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~ 81 (163)
...+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+..
T Consensus 42 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~- 120 (162)
T cd04157 42 KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL- 120 (162)
T ss_pred ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-
Confidence 345678999999999999999999999999999999999999988888887775532 2469999999999986432
Q ss_pred CCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 82 VTEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
..++...... .....++++||++|.|++++|++|.+
T Consensus 121 -~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 -TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 2222222211 11235899999999999999999865
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.83 E-value=3.8e-20 Score=128.69 Aligned_cols=113 Identities=21% Similarity=0.328 Sum_probs=86.0
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~ 82 (163)
++..+.+++|||+|++.+..++..+++++|++|+|+|++++.++.....++..+.+.. ..++|+++|+||+|+.+..
T Consensus 39 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-- 116 (158)
T cd04151 39 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-- 116 (158)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--
Confidence 4456789999999999999999999999999999999999888877666555543322 2468999999999986422
Q ss_pred CHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 83 TEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
...++..... ..+.+++++||+++.|++++|++|++
T Consensus 117 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 117 SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 2223222211 11246999999999999999999875
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=3e-20 Score=130.62 Aligned_cols=112 Identities=25% Similarity=0.331 Sum_probs=89.6
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~ 83 (163)
...+.+++||++|+..+..++..+++++|++|+|||++++.+++++..|+..+..... .++|+++|+||.|+.+.+.
T Consensus 40 ~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~-- 117 (167)
T cd04161 40 LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL-- 117 (167)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--
Confidence 3457889999999999999999999999999999999999999999999988876533 4689999999999965432
Q ss_pred HHHH------HHHHHHc--CCcEEEeccCCC------CCHHHHHHHHHH
Q 031238 84 EEDG------HSLAEKE--GLSFLETSALEA------TNVEKAFQTILT 118 (163)
Q Consensus 84 ~~~~------~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~l~~ 118 (163)
..+. ..+++.. .+.++++||++| .|+++.|+||..
T Consensus 118 ~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 118 GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 2221 2223222 246788999998 899999999974
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.82 E-value=2.1e-19 Score=127.05 Aligned_cols=111 Identities=24% Similarity=0.365 Sum_probs=87.8
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.+||++|++.+...+..+++++|++|+|||+++++++.....++..+..... .++|+++++||+|+.+ ....
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~ 134 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTP 134 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCH
Confidence 357899999999999999999999999999999999999999888777777654432 4689999999999854 2233
Q ss_pred HHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 85 EDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 85 ~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+++.+.. +..+++++++||++|.|++++|++|.+
T Consensus 135 ~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 AEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 3332221 223457899999999999999999864
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=2.6e-19 Score=125.28 Aligned_cols=110 Identities=24% Similarity=0.409 Sum_probs=89.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
...+.+|||+|++.+..++..+++++|++++|+|++++.++.....|+..+..... .+.|+++++||+|+... ...+
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~ 126 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE 126 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHH
Confidence 46889999999999999999999999999999999999889888888887765432 46999999999998542 3344
Q ss_pred HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 86 DGHSLAEK-------EGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 86 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+...+... .+.+++++||++|+|++++|++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 44444332 2347999999999999999999864
No 118
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.82 E-value=8.8e-19 Score=126.75 Aligned_cols=103 Identities=22% Similarity=0.382 Sum_probs=87.0
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-------------------CCCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-------------------DSNI 65 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~ 65 (163)
+..+.++||||+|++.|..++..+|+++|++|+|||++++.||+.+..|+..+.... ..++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 567899999999999999999999999999999999999999999999999997642 2368
Q ss_pred eEEEEeeCCCCcccccCCHHH----HHHHHHHcCCcEEEeccCCCC
Q 031238 66 VIMMAGNKSDLNHLRAVTEED----GHSLAEKEGLSFLETSALEAT 107 (163)
Q Consensus 66 piivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~ 107 (163)
|+++||||.|+.+.+.+..++ ...++++.+++.+++++..+.
T Consensus 131 PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 131 PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred eEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 999999999997666555543 345678889999988887544
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=2.4e-19 Score=124.57 Aligned_cols=111 Identities=21% Similarity=0.380 Sum_probs=88.1
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.+||++|++.+...+..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+... ...
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 119 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTA 119 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCH
Confidence 357899999999999999999999999999999999999999988888887765432 47999999999998532 223
Q ss_pred HHHHHH------HHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 85 EDGHSL------AEKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 85 ~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+++... +...+++++++||++|+|++++|++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 333222 1223446899999999999999998864
No 120
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.81 E-value=7.4e-19 Score=124.61 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=93.1
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.+||.+|+..++..|+.+++++|++|||+|+++.+.+.+....+..+..... .++|+++++||+|+.+ .+..
T Consensus 56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~ 133 (175)
T PF00025_consen 56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSE 133 (175)
T ss_dssp TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTH
T ss_pred CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchh
Confidence 446789999999999999999999999999999999999889888887777766433 5799999999999864 3445
Q ss_pred HHHHHHHHH------cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 85 EDGHSLAEK------EGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 85 ~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++...... ..+.++.+||.+|+|+.+.|+||.+++
T Consensus 134 ~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 134 EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 555544322 234689999999999999999999875
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=3.7e-18 Score=124.60 Aligned_cols=116 Identities=30% Similarity=0.568 Sum_probs=100.1
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+++.+.+.+|||+|++.+..++..++.+++++|+|||+++..++..+..|+..+..... +.|+++++||.|+.+ +.+.
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~ 131 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVK 131 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCC
Confidence 67889999999999999999999999999999999999999999999999999876654 689999999999854 3333
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+. ..+++..++.++++||+++.|++++|.++.+.+..
T Consensus 132 ~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 132 ARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 333 35667778899999999999999999999987764
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=3.5e-19 Score=123.61 Aligned_cols=111 Identities=20% Similarity=0.362 Sum_probs=89.7
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.+||++|+..+...+..+++++|++++|||++++.++.....|+..+..... .+.|+++|+||+|+.... ..
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~ 118 (158)
T cd00878 41 KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SV 118 (158)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CH
Confidence 346899999999999999999999999999999999999999998888887766432 478999999999986433 23
Q ss_pred HHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 85 EDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
++....... ...+++++||++|.|++++|++|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 333333222 2347999999999999999999875
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=1.1e-18 Score=124.86 Aligned_cols=111 Identities=22% Similarity=0.335 Sum_probs=91.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+||++|+..+...+..+++++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+.. .+..+
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~ 139 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEE 139 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHH
Confidence 35788999999999988899999999999999999999999888888888765433 4689999999999853 45566
Q ss_pred HHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 86 DGHSLAEK----------------EGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 86 ~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+++.+... ....++++||++++|++++|++|.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 66665542 12368999999999999999999764
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.80 E-value=1.6e-18 Score=122.69 Aligned_cols=111 Identities=24% Similarity=0.304 Sum_probs=86.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
++..+.+.||||||++++...+..+++++|++|+|||++++.++.....|.... ..++|+++|+||+|+.+.. .
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~ 136 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--P 136 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--H
Confidence 567788999999999999999999999999999999999876665555554322 1358999999999985422 1
Q ss_pred HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+...++++..++ .++++||++|.|++++|+++.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2333455565565 489999999999999999998764
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=2.2e-18 Score=123.02 Aligned_cols=111 Identities=18% Similarity=0.280 Sum_probs=89.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+++.+||++|+..+..++..+++++|++|+|+|++++.++.....++..+..... .+.|+++|+||+|+.. .+..+
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~ 137 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASED 137 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHH
Confidence 46789999999999999999999999999999999999999888888777765322 4689999999999853 34455
Q ss_pred HHHHHHHH------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 86 DGHSLAEK------------EGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 86 ~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
++.+.... ....++++||++++|+++++++|...
T Consensus 138 ~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 138 ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 54433211 12358999999999999999999764
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.79 E-value=7.2e-18 Score=115.07 Aligned_cols=119 Identities=22% Similarity=0.333 Sum_probs=97.6
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+..+.+++++||.+|+...+..|+.||..+|++|+|||++|+..+++....+..+..... .+.|++|++||.|+.. .
T Consensus 55 l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~ 132 (185)
T KOG0073|consen 55 LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--A 132 (185)
T ss_pred EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--c
Confidence 456678999999999999999999999999999999999999999988777766655332 5689999999999862 2
Q ss_pred CCHHH------HHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 82 VTEED------GHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 82 ~~~~~------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+..+. ...+++.+.++.+.|||.+|+++.+.|.|+++.+..+
T Consensus 133 l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 133 LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 22222 2344566678899999999999999999999988763
No 127
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.1e-18 Score=119.17 Aligned_cols=118 Identities=19% Similarity=0.330 Sum_probs=95.8
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+..+++++.+||.+|+++++.+|.+|+++.+++|||+|.+|.+.+.+.+.-+..+..... .+.|+++++||.|+++...
T Consensus 56 v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 56 VEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 345678999999999999999999999999999999999999999998877777766654 6899999999999975433
Q ss_pred CCHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++.+.... ....+..++|.+|+|+.+.++++...+..
T Consensus 136 --~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 136 --AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred --HHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 3333332222 23467899999999999999999987754
No 128
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.76 E-value=3.2e-18 Score=114.91 Aligned_cols=114 Identities=25% Similarity=0.441 Sum_probs=92.5
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
++...+.+.+||.+|+.+++.+|+.|++++++++||+|+.+++.+...+.-+..+..... .++|++|+|||.|+++ .
T Consensus 60 ~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--A 137 (186)
T KOG0075|consen 60 VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--A 137 (186)
T ss_pred eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--c
Confidence 566788999999999999999999999999999999999999888777766666665544 6899999999999864 2
Q ss_pred CCHHHHHHHHHHcC--------CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEG--------LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+... +....| +-+|.+|++...|++.+.+||+++..
T Consensus 138 L~~~~---li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 138 LSKIA---LIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHH---HHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 22222 223333 34899999999999999999998653
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=2e-17 Score=113.97 Aligned_cols=110 Identities=24% Similarity=0.409 Sum_probs=86.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+||++|++.+...+..+++++|++++|+|++++.++.....|+..+..... .++|+++|+||.|+.+... .+
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~ 120 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VD 120 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HH
Confidence 36789999999999999999999999999999999999888888777777654322 4689999999999864322 22
Q ss_pred HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
...... ....++++++||+++.|++++|+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 221111 112357899999999999999999865
No 130
>PLN00023 GTP-binding protein; Provisional
Probab=99.73 E-value=5.1e-17 Score=123.91 Aligned_cols=91 Identities=25% Similarity=0.536 Sum_probs=79.3
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC------------CCCeEEEEeeC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD------------SNIVIMMAGNK 73 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piivv~nK 73 (163)
+.+.++||||+|++.|..++..++++++++|+|||+++..+++.+..|+..+..... .++|++|||||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 568899999999999999999999999999999999999999999999999987531 25899999999
Q ss_pred CCCcccc---c---CCHHHHHHHHHHcCC
Q 031238 74 SDLNHLR---A---VTEEDGHSLAEKEGL 96 (163)
Q Consensus 74 ~Dl~~~~---~---~~~~~~~~~~~~~~~ 96 (163)
+||...+ . +..++++++++++++
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcCC
Confidence 9996542 2 357889999999875
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=5.8e-17 Score=113.45 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=79.8
Q ss_pred EEEEEEEEeCCChhhHh---------hhhhhhhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 6 KTVKAQIWDTAGQERYR---------AITSAYYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
+.+.+.||||||+.... .........+|++|+|+|+++..+ ++....|+..+..... +.|+++|+||.
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~-~~pvilv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK-NKPVIVVLNKI 123 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC-cCCeEEEEEcc
Confidence 34789999999973210 111111223689999999998654 3555677777765432 68999999999
Q ss_pred CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
|+.....+.. ...+....+.+++++||+++.|++++|+++.+.+
T Consensus 124 Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 9865443322 4445555567899999999999999999998865
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.72 E-value=2.3e-16 Score=110.94 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=83.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
...+.+||++|+..+...+..+++++|++++|+|+++..++.....|+..+..... .++|+++++||.|+.+.. ..+
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~ 134 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH
Confidence 35789999999999988888999999999999999998888887777766654422 469999999999985422 122
Q ss_pred HHHHHHHHcCC--------cEEEeccCCCCCHHHHHHHHHH
Q 031238 86 DGHSLAEKEGL--------SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 86 ~~~~~~~~~~~--------~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+ +.+..++ +++++||++|+|++++|++|++
T Consensus 135 ~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 135 E---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred H---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 2 2222222 4789999999999999999975
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.9e-16 Score=122.50 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=88.8
Q ss_pred EEEEEEeCCChhh-------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQER-------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 78 (163)
..+.+||+||..+ .......++++++++|+|+|+++.++++++..|..++..+.. .++|+++|+||+|+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 4689999999742 112222346689999999999987788888999998887654 3689999999999865
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
...+..+..+.+....+.+++++||++++|++++++++.+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 44443444555555566889999999999999999999887654
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.71 E-value=1.1e-16 Score=112.05 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=83.7
Q ss_pred EEEEEEeCCChhh----Hhhhhhhh---hcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQER----YRAITSAY---YRGAVGALLVYDITKR-QTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~ 77 (163)
..+.||||||... ...+...+ +..+|++++|+|++++ .+++.+..|.+.+..... ..+|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 4789999999632 22223333 4469999999999998 788888888888876542 368999999999986
Q ss_pred ccccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+.... .+....+.... +.+++++||+++.|++++|+++.+.
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 54433 34445555553 6789999999999999999998764
No 135
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=7.5e-16 Score=102.84 Aligned_cols=116 Identities=22% Similarity=0.406 Sum_probs=93.8
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+..+++.+.+||.+|++..+.+|++||.+..++|||+|..+.+.+++.++-+..+..... .+.|++|.+||.|+++.+
T Consensus 56 VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~- 134 (180)
T KOG0071|consen 56 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM- 134 (180)
T ss_pred EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc-
Confidence 456788999999999999999999999999999999999998888888766666655444 679999999999997544
Q ss_pred CCHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKE-----GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
...+++.+...- ..-+.++||.+|.|+.+.|.|+...+
T Consensus 135 -~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 135 -KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred -CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 345554443222 23478999999999999999998754
No 136
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.67 E-value=5.2e-15 Score=100.23 Aligned_cols=114 Identities=48% Similarity=0.830 Sum_probs=87.7
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHH-HhhcCCCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.+....+.+||++|...+...+...++.+|++++|+|++++.++.....|+... ......++|+++++||.|+......
T Consensus 41 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 41 DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 345778999999999988888888999999999999999998888887763222 2222357999999999998643333
Q ss_pred CHHH-HHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 031238 83 TEED-GHSLAEKEGLSFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
.... ..........+++++|+..+.|++++++++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 121 SEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 2222 3334445567899999999999999999875
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=1.5e-15 Score=105.51 Aligned_cols=106 Identities=19% Similarity=0.100 Sum_probs=74.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-- 81 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-- 81 (163)
...+.+|||||++++......+++++|++++|+|+++ +++.+.+. .+... + ..|+++++||+|+.....
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~ 123 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLE 123 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHH
Confidence 3578999999999987766677899999999999987 33333222 12111 2 248999999999864321
Q ss_pred CCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEK---EGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 82 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
...++..+..+. .+.+++++||+++.|++++|+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 124 LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 112333344443 3568999999999999999988753
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.67 E-value=5.8e-16 Score=105.71 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=74.9
Q ss_pred EEEeCCCh-----hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 11 QIWDTAGQ-----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 11 ~l~Dt~G~-----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+|||+|. ..+..+.. .++++|++|+|||++++.++.. ..|.... ..|+++|+||+|+.+ +....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence 68999998 23444443 5899999999999999888654 2343321 249999999999854 344566
Q ss_pred HHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHH
Q 031238 86 DGHSLAEKEGL-SFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 86 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
+.+++++..+. +++++||+++.|++++|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 67777777776 799999999999999999874
No 139
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-15 Score=102.75 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=99.3
Q ss_pred EEEEEeCCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238 9 KAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 9 ~l~l~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
++.||||+|...+ ..+-++|++-+|++++|||..+++||+.+..+-..|.+... ..+||+|++||.|+.+.+.+..+.
T Consensus 61 ~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~ 140 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV 140 (198)
T ss_pred eEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence 6889999999887 66788999999999999999999999987766666655443 579999999999998888888999
Q ss_pred HHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 87 GHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+.|++...+..++++|.+...+-+-|..+...+..
T Consensus 141 A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 141 AQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred HHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence 999999989999999999999988888888777654
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=1.6e-15 Score=104.80 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=79.0
Q ss_pred EEEEEEeCCChhhHhh------hhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRA------ITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||||+..+.. ++..++. ++|++|+|+|+++++... .|+..+.. .++|+++|+||+|+.+.
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK 116 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc
Confidence 4689999999976553 3555664 999999999998864432 34434333 25899999999999654
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
..+.. ..+.+....+.+++++||.++.|++++++++.+.
T Consensus 117 ~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 117 RGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 44433 3456667778899999999999999999988765
No 141
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=103.72 Aligned_cols=121 Identities=24% Similarity=0.490 Sum_probs=101.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc----
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN---- 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~---- 77 (163)
.+.|..+.+.+||.+|++++..+.....+++.+++|+||++.+..++.+..|+.+.+..++..+|+ +||+|.|..
T Consensus 63 ~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp 141 (205)
T KOG1673|consen 63 SIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLP 141 (205)
T ss_pred EecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCC
Confidence 457788899999999999999999999999999999999999999999999999998887766775 689999952
Q ss_pred cc-ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 78 HL-RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+ ..-.-.+...+++-.+...+++|+..+.|++.+|.-++..+.+.
T Consensus 142 ~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 142 PELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 11 11112345667888899999999999999999999998887664
No 142
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.65 E-value=2.3e-15 Score=124.22 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=86.8
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
++..+.+.||||||+.+|...+..+++.+|++|+|||++++.+......|...+. .++|+++|+||+|+.... .
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~ 139 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P 139 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence 4667899999999999999999999999999999999998766665555544332 258999999999985321 1
Q ss_pred HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+...++.+..++ .++++||++|.|++++|+++.+.+
T Consensus 140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 2233445555565 489999999999999999998765
No 143
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=105.52 Aligned_cols=122 Identities=39% Similarity=0.584 Sum_probs=95.5
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc-----
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR----- 80 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~----- 80 (163)
.+.+.+|||+|+++++.++..++.+++++++|||.++..+ ++....|...+....+...|+++++||+|+....
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE 132 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence 6789999999999999999999999999999999999555 4455789988887765569999999999996543
Q ss_pred -------cCCHHHHHHHHHHc---CCcEEEeccC--CCCCHHHHHHHHHHHHHHHHhHhH
Q 031238 81 -------AVTEEDGHSLAEKE---GLSFLETSAL--EATNVEKAFQTILTEIYHIISKKA 128 (163)
Q Consensus 81 -------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~~~ 128 (163)
.............. ...++++|++ .+.++.++|..++..+........
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 22222222222222 3348999999 999999999999999877654443
No 144
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.9e-16 Score=107.13 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=92.6
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
...+.|||.+|++..+++|..||..++++|+++|+++++-|++....+..+..... .++|+++.+||.|+.+...+ .
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--~ 145 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--A 145 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--H
Confidence 34678999999999999999999999999999999999999988877777765543 68999999999998654332 2
Q ss_pred HHHHH---HHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 86 DGHSL---AEKE---GLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 86 ~~~~~---~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
++... ++.. ...+.++||.+|+||++..+|+...+...
T Consensus 146 El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 146 ELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 22222 2222 35799999999999999999999877553
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=2.4e-15 Score=108.75 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=78.5
Q ss_pred EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.+.||||+|... +...+ ..+.++|++++|+|++++.++.....|...+......++|+++|+||+|+...
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 788999999732 22222 23678999999999999888877767766665554446899999999998543
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
... .......+.+++++||+++.|+++++++|...
T Consensus 169 ~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 169 EEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred HHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 322 13344445689999999999999999998765
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=3.9e-15 Score=115.04 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=84.6
Q ss_pred EEEEEEeCCChhhH----hhhhhh---hhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQERY----RAITSA---YYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD--SNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~----~~~~~~---~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D 75 (163)
..++|||+||.... ..+... .+.+++++|+|+|+++. ++++++..|..++..+.. ..+|+++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 57899999997421 122223 35579999999999976 677888888888776643 4689999999999
Q ss_pred CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..... ..+..+.+.+..+.+++++||++++|++++++++.+.+
T Consensus 285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 865432 23444556666678899999999999999999998754
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.63 E-value=2.9e-15 Score=107.69 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=75.3
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA- 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 81 (163)
++++.+.+.||||||+++|...+..+++++|++++|||+++.. +.....++..+.. .++|+++|+||+|+...+.
T Consensus 60 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~ 135 (194)
T cd01891 60 VTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPE 135 (194)
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHH
Confidence 4455678999999999999999999999999999999998742 2233333443332 3689999999999854221
Q ss_pred CCHHHHHHHHH-------HcCCcEEEeccCCCCCHHHH
Q 031238 82 VTEEDGHSLAE-------KEGLSFLETSALEATNVEKA 112 (163)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~ 112 (163)
...++...+.. ..+++++++||++|.|+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 136 EVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 11233444432 23578999999999887544
No 148
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.62 E-value=1.5e-14 Score=98.96 Aligned_cols=113 Identities=35% Similarity=0.560 Sum_probs=86.7
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh-hHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR-QTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+++..+.+.+||++|+..+..++..+++.++++++++|+... .++.... .|...+......+.|+++++||.|+....
T Consensus 45 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 45 EDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK 124 (161)
T ss_pred ECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch
Confidence 455558899999999999999999999999999999999877 6666654 66666655544368999999999986433
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 116 (163)
........+......+++++||+++.|++++|++|
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 125 -LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 23333333333345689999999999999999876
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.62 E-value=9.4e-15 Score=102.04 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=76.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC-HH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT-EE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~ 85 (163)
...+.+|||||+..+..++...+..+|++++|+|+++..... ....+..+.. .++|+++|+||+|+....... .+
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~ 124 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKN 124 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHH
Confidence 567899999999999988888999999999999998743211 1111222222 358999999999985322100 11
Q ss_pred HHHHHHH----Hc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 86 DGHSLAE----KE--GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 86 ~~~~~~~----~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
....+.. .. ..+++++||++++|++++++++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111111 11 35799999999999999999998754
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=4.7e-15 Score=104.23 Aligned_cols=113 Identities=22% Similarity=0.190 Sum_probs=80.6
Q ss_pred EEEEEEEeCCChhhH----hhhh---hhhhcCCcEEEEEEECCCh------hHHHHHHHHHHHHHhhcC-------CCCe
Q 031238 7 TVKAQIWDTAGQERY----RAIT---SAYYRGAVGALLVYDITKR------QTFDNVLRWLRELRDHAD-------SNIV 66 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~----~~~~---~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p 66 (163)
...+.||||||.... +.++ ...++++|++++|+|+++. .++++...|...+..... .++|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 456899999997432 1222 2347789999999999987 567777777777754432 2689
Q ss_pred EEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 67 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+++|+||+|+..................+.+++++||+++.|++++++++.+.
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 99999999986544332222223333445689999999999999999988764
No 151
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.61 E-value=7.7e-15 Score=106.33 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=75.0
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~- 82 (163)
.++.||||||++.+.......+..+|++++|+|++++ ++++.+..| ... . ..|+++|+||+|+.+....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~-~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-G-LKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-C-CCcEEEEEEchhccCHHHHH
Confidence 6789999999998877777778889999999999873 223322222 211 1 2579999999998642211
Q ss_pred -CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 83 -TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 83 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+.++++.... +.+++++||++|+|++++|+.+.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 112333333332 46799999999999999999887654
No 152
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=2e-14 Score=118.81 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=85.4
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+++.+.+.||||||+.++...+..+++.+|++|+|+|++++........|.... ..++|+++|+||+|+.... .
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~ 143 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--P 143 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--H
Confidence 556789999999999999988999999999999999999875554444443322 1268999999999985322 1
Q ss_pred HHHHHHHHHHcCCc---EEEeccCCCCCHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGLS---FLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 84 ~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.....++.+..++. ++++||++|.|++++++++.+.+.
T Consensus 144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22233444445553 899999999999999999988764
No 153
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.8e-15 Score=99.93 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=89.0
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+.++++.+++||.+|+-..+..|+.||.+.|++|||+|.+|...+......+..+..... ....++|++||.|.....
T Consensus 57 v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~- 135 (182)
T KOG0072|consen 57 VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL- 135 (182)
T ss_pred cccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh-
Confidence 456788999999999999999999999999999999999997766555555555544333 457889999999985322
Q ss_pred CCHHHHH-----HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGH-----SLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
...+.. .-.+..-..+++.||.+|+|++++++|+.+.+..
T Consensus 136 -t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 136 -TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred -hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 122211 1112223579999999999999999999987743
No 154
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.59 E-value=1.6e-14 Score=100.78 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=75.6
Q ss_pred EEeCCCh-----hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 12 IWDTAGQ-----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 12 l~Dt~G~-----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+|||||. +.+..+. ..++++|++++|+|+++..++. ..|+..+ . .+.|+++++||.|+.+ ...+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~ 110 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAA 110 (158)
T ss_pred cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHH
Confidence 6999997 3333333 3478999999999999876652 2343332 1 2578999999999854 23556
Q ss_pred HHHHHHHcCC--cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 87 GHSLAEKEGL--SFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 87 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
...++.+.++ +++++||++++|++++|+.+.+.+.+.
T Consensus 111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 6677777775 899999999999999999988776443
No 155
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.57 E-value=1.8e-15 Score=105.49 Aligned_cols=115 Identities=30% Similarity=0.576 Sum_probs=97.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcccccC-
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~~~~- 82 (163)
++++|||++|++++..+.+-+|+.+++.++|||++....|+....|.+.+..... .++|+++.+||+|.......
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~ 154 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE 154 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh
Confidence 4778999999999999999999999999999999999999999999988754322 46889999999998543222
Q ss_pred CHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
...++.++++++|+ .++++|++.+.|+.|+-..+++.+.-
T Consensus 155 ~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 155 ATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILV 195 (229)
T ss_pred hHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHh
Confidence 24678888999998 69999999999999998888876654
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=3.1e-14 Score=98.07 Aligned_cols=103 Identities=19% Similarity=0.083 Sum_probs=72.7
Q ss_pred EEEEEEeCCChhhHhh--------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRA--------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||||...+.. .....++++|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+...
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKE 120 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCCh
Confidence 5689999999876433 334568899999999999875443322 22222222 25899999999998643
Q ss_pred ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
... .......++ +++++|++++.|++++|+++.+.
T Consensus 121 ~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 121 EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 221 222334555 78999999999999999999875
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.56 E-value=5.7e-14 Score=100.79 Aligned_cols=114 Identities=14% Similarity=-0.000 Sum_probs=75.1
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-- 82 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-- 82 (163)
++.+.+.+|||||+..+..........+|++++|+|++++........+. +... .++|+++++||+|+......
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence 34678999999999765333333456789999999998754333322222 1122 25799999999998532211
Q ss_pred CHHHHHHHHH-------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAE-------KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++..+... ..+++++++||+++.|++++++.+.+++.-
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1222222211 135689999999999999999999887743
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.55 E-value=6e-14 Score=99.55 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=80.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~ 84 (163)
...+.||||||...+...+..+++.+|++++|+|++++.+... ..++..+.. .+.|+++++||+|+...... ..
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~ 136 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL 136 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence 4578999999999888888889999999999999987654332 233333332 36899999999998642221 12
Q ss_pred HHHHHHHHH--------------cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 85 EDGHSLAEK--------------EGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 85 ~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+...+.... ...+++++||+++.|++++|+++.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 233333333 245799999999999999999988775
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.55 E-value=1e-13 Score=108.02 Aligned_cols=105 Identities=20% Similarity=0.121 Sum_probs=75.8
Q ss_pred EEEEEEeCCCh---------hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQ---------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
..+.||||+|. +.+...+ ..+.++|++++|+|++++.+++....|...+......++|+++|+||+|+..
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 47889999997 2233333 3488999999999999988877766665555544334689999999999854
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.. ....+ .....+++++||+++.|++++++.|.+.
T Consensus 316 ~~-----~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 316 EP-----RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hH-----hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 22 11111 1222468999999999999999988754
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=103.93 Aligned_cols=106 Identities=25% Similarity=0.237 Sum_probs=71.5
Q ss_pred EEEEEeCCC-----------hhhHhhhhhhhhc----CCcEEEEEEECCChhHH-HH---------HHHHHHHHHhhcCC
Q 031238 9 KAQIWDTAG-----------QERYRAITSAYYR----GAVGALLVYDITKRQTF-DN---------VLRWLRELRDHADS 63 (163)
Q Consensus 9 ~l~l~Dt~G-----------~~~~~~~~~~~~~----~~d~ii~v~d~~~~~s~-~~---------~~~~~~~i~~~~~~ 63 (163)
.+.+||||| ++.++..+..++. .++++++|+|.++...+ +. ...+...+. ..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 129 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---EL 129 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---Hc
Confidence 578999999 5667766666654 35788888888653221 00 011122221 13
Q ss_pred CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCC---------cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL---------SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
++|+++|+||+|+.+.. .+...++++..++ +++++||++| |++++|++|.+.+.
T Consensus 130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 68999999999985433 3344555555554 4799999999 99999999988763
No 161
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.54 E-value=9.9e-14 Score=104.68 Aligned_cols=107 Identities=18% Similarity=0.053 Sum_probs=75.6
Q ss_pred EEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.++.||||||.... ......+++++|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+...
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 46899999997432 112345678999999999999876653 333333332 25899999999998532
Q ss_pred ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.. ..+....+....++ +++++||++|.|++++++.+.+.+
T Consensus 123 ~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 123 DK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred HH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 22 22334445444455 799999999999999999987765
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=1.1e-13 Score=111.92 Aligned_cols=115 Identities=23% Similarity=0.183 Sum_probs=77.5
Q ss_pred ecCEEEEEEEEeCCCh----------hhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238 3 VEGKTVKAQIWDTAGQ----------ERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG 71 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~----------~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 71 (163)
+++. .+.||||+|. +.+..+. ..+++++|++|+|+|++++.++.++. ++..+.. .++|+|+|+
T Consensus 256 ~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~ 329 (472)
T PRK03003 256 LGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAF 329 (472)
T ss_pred ECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEE
Confidence 3444 4579999995 3343332 34578999999999999987776653 3444332 368999999
Q ss_pred eCCCCcccccC--CHHHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 72 NKSDLNHLRAV--TEEDGHS-LAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 72 nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
||+|+.+.... ...+... +......+++++||++|.|++++|+.+.+.+...
T Consensus 330 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 330 NKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999642111 0111111 1111235899999999999999999998876543
No 163
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.53 E-value=3.2e-14 Score=105.90 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=78.3
Q ss_pred hhHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCc
Q 031238 19 ERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97 (163)
Q Consensus 19 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (163)
++++.+.+.+++++|++++|||++++. +++.+..|+..+.. .++|+++|+||+||.+.+.+..+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 678888999999999999999999887 89999999876643 3689999999999965444433444444 457889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 031238 98 FLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 98 ~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998863
No 164
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=3e-13 Score=107.43 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=84.1
Q ss_pred EEEEEEEeCCChhh----Hhhhhhhh---hcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCC
Q 031238 7 TVKAQIWDTAGQER----YRAITSAY---YRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD--SNIVIMMAGNKS 74 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~ 74 (163)
...+.|||+||... ...+...+ +.+++++|+|+|+++. +++++...|..++..+.. .++|++||+||+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 34689999999743 11233333 5569999999999864 567777788888877644 368999999999
Q ss_pred CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
|+.. ..+..+.+.+..+.+++++||++++|++++++++.+.+..
T Consensus 285 DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 285 DLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9842 2344555666666789999999999999999999887754
No 165
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=1.2e-13 Score=110.53 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=78.8
Q ss_pred EEEEEEeCCChhhHhh--------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRA--------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
+.+.+|||||.+.+.. ....+++++|++++|||++++.+++.. |+..+.. .++|+++|+||+|+...
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN 325 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence 4568999999854432 123578899999999999988777654 6555432 36899999999998542
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
....+++..+.+++++||++ .|++++|+.+.+.+.+..
T Consensus 326 ------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 326 ------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred ------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 12344556677899999997 699999999998887654
No 166
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.51 E-value=1.9e-13 Score=94.04 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=74.3
Q ss_pred EEEEEEEeCCChhhHhh--------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYRA--------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
...+.+|||+|...+.. .....+.++|++++|+|++++.+......+.. ....|+++|+||.|+..
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence 35789999999754321 12346789999999999998777665544332 23689999999999864
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.... .....+.+++++||+++.|+++++++|...+
T Consensus 122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3322 2333456899999999999999999987654
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.50 E-value=3e-13 Score=105.13 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=73.1
Q ss_pred EEEEEEEeCCChhh-Hhhh-------hhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQER-YRAI-------TSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~-~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..++.||||||... +..+ ....+.++|++++|+|.++. +.... .|+..+... +.|+++|+||+|+.
T Consensus 99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~ 173 (339)
T PRK15494 99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIE 173 (339)
T ss_pred CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCc
Confidence 35689999999842 2221 11347899999999998763 33433 344444332 45778899999985
Q ss_pred ccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+. ......+++...+ ..++++||++|.|++++|++|.+.+.
T Consensus 174 ~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 174 SK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 42 2344555554443 47999999999999999999887653
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.50 E-value=9.3e-14 Score=111.55 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=75.7
Q ss_pred EEEEEEeCCChhhHhhh--------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRAI--------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||+|.+.+... ...+++++|++++|||++++.++++...|.. ..+.|+++|+||+|+...
T Consensus 263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence 46799999998654321 2346889999999999998877765544432 236899999999998643
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.... ...+.+++++||++|.|++++++++.+.+..
T Consensus 337 ~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 337 IDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 3221 2335679999999999999999999987753
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=4.6e-13 Score=107.89 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=80.2
Q ss_pred EEEEEEEeCCChhh----Hhhh---hhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcC-----------CC
Q 031238 7 TVKAQIWDTAGQER----YRAI---TSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHAD-----------SN 64 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~----~~~~---~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~-----------~~ 64 (163)
...+.|||+||... ...+ .-.++.++|++|+|+|+++. +.+.++..|..++..+.. ..
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 35789999999632 1111 12246789999999999752 345555555555544421 35
Q ss_pred CeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+|+|||+||+|+.+...+ .+.........+++++++||++++|+++++++|.+.+...+
T Consensus 285 kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 285 RPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 899999999999654332 22223333445789999999999999999999998876543
No 170
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.50 E-value=4.8e-14 Score=94.41 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=85.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+++.+||.+|++..+..|..||.+.|++|||+|.+|...|+++..-+.++....+ ..+|+++.+||.|+.-...+ +
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~--e 138 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV--E 138 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch--H
Confidence 37899999999999999999999999999999999999889988766666665544 67999999999998643333 2
Q ss_pred HHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 86 DGHSL-----AEKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 86 ~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
++..- .+....++.++||.+++|+....+++..
T Consensus 139 eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 139 EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 22111 1112236889999999999888887654
No 171
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.49 E-value=5.3e-13 Score=111.88 Aligned_cols=105 Identities=27% Similarity=0.295 Sum_probs=78.0
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+....+.||||||++.|..++...++.+|++|+|+|++++ ++++.+. .+. ..++|+|+++||+|+....
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k---~~~iPiIVViNKiDl~~~~- 363 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ---AANVPIIVAINKIDKANAN- 363 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH---hcCceEEEEEECCCccccC-
Confidence 3457899999999999999999999999999999999874 3333322 221 2368999999999985421
Q ss_pred CCHHHHHHH-------HHHcC--CcEEEeccCCCCCHHHHHHHHHHH
Q 031238 82 VTEEDGHSL-------AEKEG--LSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 82 ~~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+..... ...++ ++++++||++|.|++++|+++...
T Consensus 364 --~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 364 --TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred --HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 2222211 12233 579999999999999999988765
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=5.1e-13 Score=106.78 Aligned_cols=109 Identities=27% Similarity=0.188 Sum_probs=74.3
Q ss_pred EEEEEeCCChhhHhh----------h-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQERYRA----------I-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~----------~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+|||||..++.. . ...+++.+|++|+|+|++++.+..+. .++..+.. .++|+++|+||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccC
Confidence 688999999744321 1 12468899999999999987665544 23333322 368999999999986
Q ss_pred ccccCCHHHHHH-HHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHS-LAEKE----GLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+... ..+.... +.... .++++++||++|.|++++|+++.+.+..
T Consensus 297 ~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 297 KDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2111 1222222 22221 3689999999999999999999987654
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.48 E-value=4.3e-13 Score=110.53 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=74.1
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH 88 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 88 (163)
.+.||||||++.|..++...+..+|++|+|+|++++..-.. ...+.... ..++|+++++||+|+.+. ..+...
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~ 208 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHAK---AANVPIIVAINKIDKPEA---NPDRVK 208 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHHH---HcCCCEEEEEECcccccC---CHHHHH
Confidence 68899999999999998888999999999999987422111 11122221 136899999999998532 223333
Q ss_pred HHHHHcC---------CcEEEeccCCCCCHHHHHHHHHH
Q 031238 89 SLAEKEG---------LSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 89 ~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
......+ .+++++||++|+|++++|+++..
T Consensus 209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 3332222 36899999999999999998863
No 174
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=3.7e-13 Score=108.85 Aligned_cols=105 Identities=25% Similarity=0.225 Sum_probs=73.9
Q ss_pred EEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 9 KAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 9 ~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.||||+|.+. +...+..+++.+|++|+|||++++.++.. ..|...+.. .++|+++|+||+|+....
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~ 162 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE 162 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc
Confidence 578999999752 34445667899999999999998755432 233333332 368999999999985321
Q ss_pred cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+..+.+ ..++ .++++||++|.|++++|+++++.+..
T Consensus 163 ---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 163 ---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1222222 2344 46899999999999999999987744
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.48 E-value=3.2e-13 Score=111.62 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=78.8
Q ss_pred EEEEEEeCCChhhHhhh------hhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRAI------TSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.++++|||||...+... .+.++ .++|++++|+|+++.+. ...+..++.+ .++|+++++||+|+.++
T Consensus 41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEK 114 (591)
T ss_pred eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHh
Confidence 45789999998776432 34443 37899999999987432 2233333332 36899999999998655
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+. ...+.+.+..+++++++||++|+|++++++.+.+..
T Consensus 115 ~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 115 KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5543 345677888899999999999999999999998753
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.47 E-value=7.9e-13 Score=109.15 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=79.0
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC-
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~- 82 (163)
..+.|||+||+++|.......+.++|++++|+|+++ +++.+.+. .+. . .++| +++++||+|+.+...+
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~-~--lgi~~iIVVlNK~Dlv~~~~~~ 122 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLD-L--LGIPHTIVVITKADRVNEEEIK 122 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHH-H--cCCCeEEEEEECCCCCCHHHHH
Confidence 678999999999998777778899999999999997 34443332 222 1 2467 9999999998653322
Q ss_pred -CHHHHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 83 -TEEDGHSLAEKE----GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 83 -~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
..+++..+.+.. +.+++++||++|.|++++++.+...+.
T Consensus 123 ~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 133455555544 468999999999999999988766553
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.47 E-value=6e-13 Score=95.23 Aligned_cols=112 Identities=23% Similarity=0.247 Sum_probs=78.4
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-C
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-T 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~ 83 (163)
.....+.|+|+||+..|.......++.+|++|+|+|+.++.... ....+..+... ++|+++++||+|+...+.. .
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHH
Confidence 34567899999999998887777899999999999998764322 22333333322 6889999999998622110 1
Q ss_pred HHHHH-HHHHHcC------CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 84 EEDGH-SLAEKEG------LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 84 ~~~~~-~~~~~~~------~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.++.. .+.+..+ ++++++||.+|.|++++++.+.+.+
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 12222 3333332 4699999999999999999988765
No 178
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.9e-12 Score=90.36 Aligned_cols=107 Identities=25% Similarity=0.372 Sum_probs=86.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
..+.|+|||||++++.+|+.++++++++|+++|.+.+..+ .....+..+.... .+|++|+.||+||.+. .+.+.+
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i 142 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKI 142 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHH
Confidence 4678999999999999999999999999999999998887 4444444444332 3899999999999753 345666
Q ss_pred HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 88 HSLAEKE--GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 88 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+++.+.. ..++++++|..+.+..+.++.+...
T Consensus 143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 6665554 7799999999999999988887765
No 179
>PRK11058 GTPase HflX; Provisional
Probab=99.45 E-value=1.3e-12 Score=104.07 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=75.6
Q ss_pred EEEEEeCCChhhH--hhhh------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 9 KAQIWDTAGQERY--RAIT------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 9 ~l~l~Dt~G~~~~--~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.+|||+|..+. ..++ ...++.+|++|+|+|++++.+++.+..|...+......++|+++|+||+|+....
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence 5689999998331 1122 2346889999999999998877776554444443333468999999999985321
Q ss_pred cCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
. .... ....+.+ ++++||++|.|++++++++.+.+..
T Consensus 326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1 1111 1123444 5889999999999999999988743
No 180
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.45 E-value=4.3e-13 Score=88.77 Aligned_cols=72 Identities=33% Similarity=0.705 Sum_probs=58.6
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH---HHHHHHhhcCCCCeEEEEeeCCC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR---WLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~piivv~nK~D 75 (163)
+.+....+.+||++|++.+...+..++.++|++++|||++++.+++.+.. |+..+..... ++|+++|+||.|
T Consensus 45 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 45 VDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp ETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred ecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 34555568999999999998888888999999999999999999988754 5555554434 699999999998
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.45 E-value=1e-12 Score=110.96 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=74.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.||||||+..|..++...++.+|++|+|||++++ ++.+.+ .... ..++|+|+++||+|+.... .
T Consensus 337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a~---~ 406 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGAN---P 406 (787)
T ss_pred EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECccccccC---H
Confidence 5688999999999999988889999999999999874 333222 2221 2368999999999985421 1
Q ss_pred HHHHH-------HHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 031238 85 EDGHS-------LAEKEG--LSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 85 ~~~~~-------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+.... +...++ ++++++||++|.|++++|+++..
T Consensus 407 e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 407 DRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 22111 122333 57999999999999999999875
No 182
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.44 E-value=6.1e-13 Score=106.37 Aligned_cols=109 Identities=20% Similarity=0.150 Sum_probs=74.0
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
....+.+.||||||+++|.......+..+|++|+|+|+++++++.. ...++. +....+ ..|+++++||+|+.+...
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNYDE 158 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCccH
Confidence 3445789999999999886655556789999999999998754311 111111 222222 357999999999853111
Q ss_pred ----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 031238 82 ----VTEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 82 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 114 (163)
...+++..+++..+ ++++++||++|.|+.+.+.
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11345556666655 4689999999999987553
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.44 E-value=9.7e-13 Score=90.00 Aligned_cols=108 Identities=20% Similarity=0.165 Sum_probs=75.1
Q ss_pred EEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 8 VKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
..+.+||++|..... .....+++.+|++++|+|++++....... ++.... ..+.|+++|+||.|+....
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChh
Confidence 468999999976543 23445789999999999999876655443 333332 2368999999999985432
Q ss_pred cCCHH---HHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 81 AVTEE---DGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 81 ~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
..... .........+.+++++||.++.|++++++++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 121 EEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 22111 0112222335689999999999999999998765
No 184
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=1.7e-12 Score=102.23 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=89.1
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+|..|.|.|+||||+.+|.......+..|.|.++|+|++++...+.+.+.+.-+. .+..+|-|.||+||+....
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp-- 145 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP-- 145 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--
Confidence 5688999999999999998888889999999999999999877666666555443 3578889999999975332
Q ss_pred HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+...+++..-.|+ ..+.+||++|.||+++++.+++.+.
T Consensus 146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 2333444455576 4799999999999999998887763
No 185
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.4e-13 Score=96.29 Aligned_cols=115 Identities=33% Similarity=0.574 Sum_probs=98.2
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
.+.+++..|||+|++.+..+...+|=.+.+.|++||++..-.+.++..|...+.+... ++||++.|||.|... +.+ .
T Consensus 56 ~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~-r~~-k 132 (216)
T KOG0096|consen 56 RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKA-RKV-K 132 (216)
T ss_pred cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccc-ccc-c
Confidence 3468999999999999999999999999999999999999999999999999998887 699999999999854 322 2
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.....+.+..+++|+++||+++.|.+.-|-++.+.+..
T Consensus 133 ~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 133 AKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred cccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence 23334556678999999999999999999999887754
No 186
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=3.7e-12 Score=100.54 Aligned_cols=113 Identities=19% Similarity=0.081 Sum_probs=82.0
Q ss_pred EEEEEeCCChhhH-------hhhhhhhhcCCcEEEEEEECC---ChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCC
Q 031238 9 KAQIWDTAGQERY-------RAITSAYYRGAVGALLVYDIT---KRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDL 76 (163)
Q Consensus 9 ~l~l~Dt~G~~~~-------~~~~~~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl 76 (163)
.+.|+||||...- .......+.++|++++|+|++ +.+.+++...|+.++..+.. .++|+++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 5899999997531 111123578999999999998 44567777778887776543 35899999999998
Q ss_pred cccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.....+ .+..+.+.+..+ .+++.+||+++.|++++++.|.+.+..
T Consensus 288 ~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 288 LDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 643322 334444545444 368999999999999999999887744
No 187
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.42 E-value=1.7e-12 Score=103.24 Aligned_cols=112 Identities=21% Similarity=0.158 Sum_probs=76.6
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~ 84 (163)
...+.|||+||+++|...+......+|++++|+|++++....+....+..+. ... ..|+++++||+|+.+.... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-i~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-IKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-CCeEEEEEEccccCCHHHHHHHH
Confidence 4578999999999997777777788999999999996431112222222222 111 3578999999998642211 12
Q ss_pred HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++..+.+.. +++++++||+++.|+++++++|...+
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3334444332 56799999999999999999887654
No 188
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.42 E-value=1.4e-12 Score=107.65 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=83.3
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~- 82 (163)
+.+.+++.||||||+.+|...+..+++.+|++++|+|+++.. ......|+..+... ++|+++|+||+|+...+..
T Consensus 60 ~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~ 135 (594)
T TIGR01394 60 RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDE 135 (594)
T ss_pred EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHH
Confidence 445578999999999999988889999999999999998642 33445666655543 5899999999998643211
Q ss_pred CHHHHHHHHH-------HcCCcEEEeccCCCC----------CHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAE-------KEGLSFLETSALEAT----------NVEKAFQTILTEIY 121 (163)
Q Consensus 83 ~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 121 (163)
..+++..+.. ...++++.+||++|. |+..+|+.+++.+.
T Consensus 136 v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 136 VVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 1233333332 234679999999996 78888888777653
No 189
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.41 E-value=4.2e-12 Score=104.66 Aligned_cols=104 Identities=21% Similarity=0.143 Sum_probs=73.1
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC---
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--- 82 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--- 82 (163)
.+.||||||++.|..++..+++.+|++++|||+++ +.+++.+.. +.. .++|+++++||+|+......
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccC
Confidence 38899999999999999999999999999999987 444443322 111 26899999999998532100
Q ss_pred ---------CHHH------------HHHHHH------------Hc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 83 ---------TEED------------GHSLAE------------KE--GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 83 ---------~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
..+. ...+.+ .+ ..+++++||++|+|+++++.++...
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0000 001111 11 2478999999999999999877654
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.41 E-value=3.6e-12 Score=88.14 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=73.9
Q ss_pred EEEEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 6 KTVKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
....+.+|||+|.... .......+..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhcc
Confidence 3457889999996432 22334568899999999999986211 111222333222 57999999999986
Q ss_pred ccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.......+....+....+ .+++++|++++.|++++++.|.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 333322334444444443 589999999999999999998764
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.40 E-value=3.7e-12 Score=97.05 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=75.0
Q ss_pred EEEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
..++.||||||.... .......+.++|++++|+|++++..- .....+..+. ..+.|+++|+||+|+..
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVK 127 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCC
Confidence 368999999996432 22334467899999999999883211 1112222222 12589999999999863
Q ss_pred cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
...........+.+..+ .+++++||+++.|++++++++.+.+
T Consensus 128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 32222344555555444 4799999999999999999988775
No 192
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.40 E-value=3.4e-12 Score=101.58 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=72.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh----HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~- 82 (163)
..+.||||||+.+|..........+|++++|+|++++. +.+.+. .+... . ..|+++|+||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~-~-i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII-G-IKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-CCcEEEEEEeeccccchhHH
Confidence 57899999999887654444455679999999999642 222222 22211 1 2478999999998643221
Q ss_pred -CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 83 -TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 83 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+++..+.+.. +.+++++||+++.|++++++.|...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123344444332 46799999999999999999887655
No 193
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2e-12 Score=103.24 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=86.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~- 82 (163)
+|..+.|+++||||+.+|.......+.-|+|+|+|+|++++.-.+.+..++.-+. .+.-+|.|+||+|++..+.-
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHH
Confidence 4677999999999999999999999999999999999998765555544444332 35788999999999754321
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
...+..++....+-+++.+||++|.|++++|+++++.+.
T Consensus 197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 122333333333447999999999999999999888763
No 194
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=9.9e-12 Score=86.65 Aligned_cols=107 Identities=26% Similarity=0.205 Sum_probs=70.8
Q ss_pred EEEEEeCCChhhH----------hhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQERY----------RAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~~----------~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+|||+|.... ... ....+.++|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLV 126 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccC
Confidence 4789999996322 111 12356789999999999987665443 22333222 258999999999986
Q ss_pred ccccCCHHHHHH-HHHHc----CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHS-LAEKE----GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+......+...+ +.+.. ..+++++||+++.|++++++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 543222222222 22222 3579999999999999999988753
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=6.3e-12 Score=100.75 Aligned_cols=100 Identities=25% Similarity=0.215 Sum_probs=72.1
Q ss_pred EEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.+|||||... +......++..+|++|+|+|++++.+. ..+..|+.. .++|+++|+||+|+.
T Consensus 49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~ 122 (435)
T PRK00093 49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP 122 (435)
T ss_pred cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc
Confidence 5789999999876 233345668899999999999875333 233444432 158999999999974
Q ss_pred ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+ . .....++ ...++ .++++||++|.|++++|+.+..
T Consensus 123 ~-~---~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 123 D-E---EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred c-c---hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 3 1 1222222 24465 4899999999999999999887
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.36 E-value=3e-12 Score=102.34 Aligned_cols=110 Identities=21% Similarity=0.154 Sum_probs=71.3
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHH-HHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF-DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
++.+.+.+.||||||+++|.......++.+|++++|+|+++...+ .....++.... ... ..|+++++||+|+.+...
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~-~~~iivviNK~Dl~~~~~ 156 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG-INQLIVAINKMDAVNYDE 156 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC-CCeEEEEEEccccccccH
Confidence 344567899999999988755444457889999999999872111 11122222222 222 247999999999864211
Q ss_pred ----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 031238 82 ----VTEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 82 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 114 (163)
...+++..+.+..+ .+++++||++|.|+++.++
T Consensus 157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234455555555 3689999999999987553
No 197
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=1.6e-11 Score=98.20 Aligned_cols=103 Identities=22% Similarity=0.235 Sum_probs=74.4
Q ss_pred EEEEEEeCCCh--------hhHhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQ--------ERYRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~--------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.+|||||. ..+......+++.+|++++|+|++++.+.. .+..|+.. .++|+++|+||+|+.
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCC
Confidence 35899999996 344555667789999999999998754332 23334332 258999999999986
Q ss_pred ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
..... ..+ ....++ +++++||.+|.|+.++++.+.+.+.
T Consensus 121 ~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 121 KEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 43321 122 234566 7999999999999999999887763
No 198
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.34 E-value=2.7e-11 Score=86.78 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=71.8
Q ss_pred EEEEEEeCCCh----------hhHhhhhhhhhcCC---cEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEee
Q 031238 8 VKAQIWDTAGQ----------ERYRAITSAYYRGA---VGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGN 72 (163)
Q Consensus 8 ~~l~l~Dt~G~----------~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~n 72 (163)
..+.||||||. +.+..+...+++.+ +++++++|.+++..... +..|+ . . .+.|+++++|
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~-~--~~~~~iiv~n 143 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---K-E--YGIPVLIVLT 143 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---H-H--cCCcEEEEEE
Confidence 46889999993 45555556666654 67888999887543322 22232 1 1 2589999999
Q ss_pred CCCCcccccC--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 73 KSDLNHLRAV--TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 73 K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
|.|+...... ..+.+..........++++||+++.|++++++.+...+
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 9998543221 12223334443357899999999999999999887665
No 199
>PRK10218 GTP-binding protein; Provisional
Probab=99.34 E-value=1.4e-11 Score=101.93 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=79.6
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA- 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 81 (163)
++.+.+.+.+|||||+.+|...+..+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+...+.
T Consensus 63 i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~ 138 (607)
T PRK10218 63 IKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPD 138 (607)
T ss_pred EecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchh
Confidence 345567899999999999999899999999999999999875332 23333333332 2688999999999864321
Q ss_pred CCHHHHHHHHHH-------cCCcEEEeccCCCC----------CHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEK-------EGLSFLETSALEAT----------NVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~-------~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 120 (163)
...+++..+... ..++++.+||.+|. |+..+|+.+++.+
T Consensus 139 ~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 139 WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 112333333211 24679999999998 4677777666555
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.34 E-value=1.1e-11 Score=90.18 Aligned_cols=103 Identities=28% Similarity=0.192 Sum_probs=67.3
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC----
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV---- 82 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---- 82 (163)
..++.||||||++++.......++.+|++|+|+|++++..-. .......+... . ..++|+|+||+|+......
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHH
Confidence 346789999999988665666789999999999998753211 11112222211 1 2457889999998542111
Q ss_pred CHHHHHHHHHHcCC---cEEEeccCCCCCHHHH
Q 031238 83 TEEDGHSLAEKEGL---SFLETSALEATNVEKA 112 (163)
Q Consensus 83 ~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~ 112 (163)
...+...+.+..++ +++++||+++.|+++.
T Consensus 153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 12234445555564 4899999999998753
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.33 E-value=6.4e-12 Score=92.07 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=66.6
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---H---HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.....+.||||||+..+.......++.+|++|+|+|++++.. + ......+...... ...|+++++||+|+..
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVT 151 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 345678999999998876666666788999999999987421 1 1122222222211 2368999999999862
Q ss_pred c--ccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 031238 79 L--RAVT----EEDGHSLAEKEG-----LSFLETSALEATNVE 110 (163)
Q Consensus 79 ~--~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 110 (163)
. .... .+++..+....+ .+++++||++|.|++
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 0000 122222334433 469999999999986
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=9.7e-11 Score=99.07 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=73.8
Q ss_pred EEEEEeCCChh----------hHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQE----------RYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~----------~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.||||+|.. .+..+. ...++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~ 574 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLM 574 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcC
Confidence 46699999953 232222 24478999999999999887766654 3333332 368999999999985
Q ss_pred ccccCCHHHHHHHH-HHc----CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLA-EKE----GLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+... .+...... ... ..+++++||++|.|++++|+.+.+.+..
T Consensus 575 ~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 575 DEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4221 11222222 111 2367999999999999999999887765
No 203
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=2.7e-11 Score=102.39 Aligned_cols=106 Identities=23% Similarity=0.165 Sum_probs=72.3
Q ss_pred EEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||+|.+. +......+++.+|++|+|+|++++....+ ..|...+.. .++|+++|+||+|+...
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence 4688999999753 33444567899999999999986422111 133333332 36899999999998532
Q ss_pred ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
. .....+. ..++ ..+++||++|.|++++|+++++.+..
T Consensus 399 ~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 399 E----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred h----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1 1112221 2343 46899999999999999999987743
No 204
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.30 E-value=4.2e-11 Score=99.47 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=73.2
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC--
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV-- 82 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~-- 82 (163)
.+.||||||+++|.......+.++|++++|+|++.+ ++.+.+ ..+. .. ++| ++||+||+|+.+....
T Consensus 52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~-~l--gi~~iIVVlNKiDlv~~~~~~~ 124 (614)
T PRK10512 52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQ-LT--GNPMLTVALTKADRVDEARIAE 124 (614)
T ss_pred EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHH-Hc--CCCeEEEEEECCccCCHHHHHH
Confidence 478999999999866555668899999999999873 233222 2222 21 345 6799999998642221
Q ss_pred CHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 83 ~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+++..+....+ .+++++||++|.|++++++.|....
T Consensus 125 v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 125 VRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 1234444554444 5799999999999999999887543
No 205
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.29 E-value=1.5e-11 Score=85.20 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=68.5
Q ss_pred EEEEEEeCCChhh------Hhhhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQER------YRAITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~------~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.|+|+||--. .......++ ...|++|+|+|+++.+ .-..+..++.+. ++|+++++||+|....
T Consensus 47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAER 120 (156)
T ss_dssp EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHH
T ss_pred ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHH
Confidence 4688999999422 123334443 5899999999998743 223334444433 6999999999998654
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 116 (163)
+.+.. ....+.+..+++++.+||++++|++++++.|
T Consensus 121 ~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 121 KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 44322 2455777789999999999999999998865
No 206
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=3.7e-11 Score=96.32 Aligned_cols=110 Identities=27% Similarity=0.240 Sum_probs=72.8
Q ss_pred EEEEEEeCCChhh----------Hhhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 8 VKAQIWDTAGQER----------YRAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~~~----------~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
..+.+|||||..+ +... ...+++.+|++|+|+|++++.+..+. .+...+.. .++|+++++||+|+
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl 296 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDL 296 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccC
Confidence 4578999999532 2211 12367899999999999987665443 23333322 25899999999998
Q ss_pred cccccCCHHHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEK----EGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+... ..+....+... ..++++++||+++.|++++|+.+.+....
T Consensus 297 ~~~~~-~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 297 VDEKT-MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCHHH-HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 63221 11111112222 24689999999999999999998876543
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.28 E-value=7.7e-11 Score=97.41 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=72.0
Q ss_pred EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--C-
Q 031238 10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--T- 83 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~- 83 (163)
+.||||||++.|..++...++.+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+...... .
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCc
Confidence 6899999999999888888899999999999997 455544432 221 26899999999998421110 0
Q ss_pred -------------HH-------HHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 84 -------------EE-------DGHSLAEKE---------------GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 84 -------------~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+ +........ .++++++||.+|+|++++++.+...
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00 000111111 2468999999999999999887643
No 208
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.28 E-value=2.8e-11 Score=85.89 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=63.9
Q ss_pred EEEEEeCCCh----------hhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 9 KAQIWDTAGQ----------ERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 9 ~l~l~Dt~G~----------~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+.+|||||. ..+..+...+++. ++++++|+|++++.+..+. .++..+.. .++|+++++||+|
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D 140 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD 140 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence 4789999994 3344445556654 5899999999876444333 22233322 2689999999999
Q ss_pred CcccccC--CHHHHHHHHHHcC--CcEEEeccCCCCCHH
Q 031238 76 LNHLRAV--TEEDGHSLAEKEG--LSFLETSALEATNVE 110 (163)
Q Consensus 76 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 110 (163)
+....+. ..+++++.....+ ..++++||++|+|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 8542221 2334444444443 479999999999973
No 209
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.27 E-value=5.5e-11 Score=91.68 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=90.2
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEe
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAG 71 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~ 71 (163)
++.+.+.+.+||++|++..+..|..++.+++++|||+|+++. ..+.+....+..+..... .+.|+++++
T Consensus 156 f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~ 235 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL 235 (317)
T ss_pred EEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence 344567899999999999999999999999999999999874 456666666666665433 579999999
Q ss_pred eCCCCccc---------------c-cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 72 NKSDLNHL---------------R-AVTEEDGHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 72 nK~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
||.|+... . ....+.+..+... ..+.++.++|.+..++..+|+.+.+.++...
T Consensus 236 NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 236 NKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred cChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 99996211 1 2233344333322 2345678899999999999999998887654
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.27 E-value=6.5e-11 Score=100.40 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=81.3
Q ss_pred cCEEEEEEEEeCCChhhHhh----------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238 4 EGKTVKAQIWDTAGQERYRA----------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG 71 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 71 (163)
+.....+.+|||||...+.. ..+.++ ..+|++++|+|+++.+. ...|..++.+. ++|+++++
T Consensus 46 ~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVl 119 (772)
T PRK09554 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVAL 119 (772)
T ss_pred EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEE
Confidence 44556789999999876532 122333 47999999999998543 23344444433 68999999
Q ss_pred eCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 72 NKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 72 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
||+|+.+++.+ ....+.+.+..+++++++||.+++|++++.+.+.+..
T Consensus 120 NK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 120 NMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 99998655554 3456677888899999999999999999998887654
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.26 E-value=5.1e-11 Score=86.89 Aligned_cols=70 Identities=27% Similarity=0.284 Sum_probs=54.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+++.+.+.+|||||+.++......++..+|++|+|+|+++..+... ..++..... .++|+++|+||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 3567899999999999988778888999999999999987655432 334343322 258999999999974
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.25 E-value=1.2e-10 Score=86.33 Aligned_cols=70 Identities=24% Similarity=0.193 Sum_probs=55.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.+..++.+|||||+.+|...+..+++.+|++++|+|+++.... ....++..+... ++|+++++||+|+.
T Consensus 60 ~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 60 QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 34456889999999999988888899999999999999986443 334555544432 68999999999984
No 213
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.24 E-value=7.7e-11 Score=85.43 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=58.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCC-cEEEEEEECCCh-hHHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCcc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGA-VGALLVYDITKR-QTFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~ 78 (163)
....+.+||+||+.+++..+..+++++ +++|||+|+++. .++.++..|+..+... ...++|+++++||+|+..
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 346789999999999998888899999 999999999987 6777766665554332 124799999999999854
No 214
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.23 E-value=2e-10 Score=99.50 Aligned_cols=102 Identities=22% Similarity=0.193 Sum_probs=70.8
Q ss_pred EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC---
Q 031238 10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--- 83 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--- 83 (163)
+.||||||++.|..++...+..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccch
Confidence 7999999999998888778889999999999987 34443332 2222 258999999999985322110
Q ss_pred ----------HHHHHHH----------HHH-------------c--CCcEEEeccCCCCCHHHHHHHHHH
Q 031238 84 ----------EEDGHSL----------AEK-------------E--GLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 84 ----------~~~~~~~----------~~~-------------~--~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
.....++ ... + .++++++||++|+|+++++..+..
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0001111 011 1 247899999999999999987654
No 215
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.23 E-value=3e-10 Score=83.55 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=68.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC-
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT- 83 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~- 83 (163)
...+.|.||||+++|.......+. .+|++++|+|++.+..- ....++..+.. .++|+++|+||+|+.+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECccccCHHHHHH
Confidence 346889999999988554333343 68999999999865331 12233333332 258999999999985422211
Q ss_pred -HHHHHHHHHH--------------------------cCCcEEEeccCCCCCHHHHHHHHH
Q 031238 84 -EEDGHSLAEK--------------------------EGLSFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 84 -~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
.++..++... ...++|.+||.+|+|++++...|.
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1222222221 013789999999999999887653
No 216
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.22 E-value=3.5e-10 Score=88.06 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=88.4
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEeeC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGNK 73 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~nK 73 (163)
...+.+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....+..+..... .+.|+++++||
T Consensus 181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 3456789999999999999999999999999999999863 346666666777665432 57999999999
Q ss_pred CCCccc---------------ccCCHHHHHHHHHH-----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 74 SDLNHL---------------RAVTEEDGHSLAEK-----------EGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 74 ~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
.|+... .....+.+..+... ..+.++.++|.+..++..+|+.+.+.+.....
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 997311 11123333333221 12456788999999999999999888877553
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.21 E-value=3.8e-10 Score=81.34 Aligned_cols=103 Identities=22% Similarity=0.158 Sum_probs=68.9
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 82 (163)
+.+..++.|.||||+..+.......+..+|++++|+|++.+..- .....+..+... ++| +|+++||+|+......
T Consensus 61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~ 136 (195)
T cd01884 61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKADMVDDEEL 136 (195)
T ss_pred cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHH
Confidence 34455788999999988877666778899999999999865321 222333333322 466 7899999998532221
Q ss_pred ---CHHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 031238 83 ---TEEDGHSLAEKEG-----LSFLETSALEATNVE 110 (163)
Q Consensus 83 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 110 (163)
..+++..+....+ ++++++||.+|.|+.
T Consensus 137 ~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 137 LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 1233444544444 579999999999853
No 218
>COG1159 Era GTPase [General function prediction only]
Probab=99.20 E-value=2.1e-10 Score=86.06 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=77.4
Q ss_pred cCEEEEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 4 EGKTVKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
..+..++.|.||||... +.......++++|+++||+|++.+- ..+ ...++.+.. .+.|+++++||.
T Consensus 50 t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~---~~~pvil~iNKI 124 (298)
T COG1159 50 TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK---TKTPVILVVNKI 124 (298)
T ss_pred EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh---cCCCeEEEEEcc
Confidence 34577899999999643 3334456688999999999998742 221 122333332 257999999999
Q ss_pred CCcccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
|............+.+.....+ .++++||++|.|++.+.+.+...+.
T Consensus 125 D~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 125 DKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred ccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 9765443213334444444444 7999999999999999998877664
No 219
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.7e-10 Score=90.35 Aligned_cols=103 Identities=21% Similarity=0.239 Sum_probs=75.1
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
-.+.|.||||++.|..++..=.+=+|++|+|+++++. ++.+.+ +..+ ..+.|++|..||+|.++.. .
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI----~hak---~a~vP~iVAiNKiDk~~~n---p 124 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI----NHAK---AAGVPIVVAINKIDKPEAN---P 124 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH----HHHH---HCCCCEEEEEecccCCCCC---H
Confidence 3678999999999999887777788999999999984 444333 2222 2379999999999986422 2
Q ss_pred HHHHHHHHHcCC---------cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGL---------SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 85 ~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.....-..++|+ .++++||++|+|+.+++..++-..
T Consensus 125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 222222223333 589999999999999998877544
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.18 E-value=3.8e-10 Score=89.49 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=64.6
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~ 83 (163)
.....+.||||||+++|......-+..+|++++|+|++.+..- ....++..+... ++| +|+++||+|+.+.....
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~ 147 (394)
T PRK12736 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYLVVFLNKVDLVDDEELL 147 (394)
T ss_pred CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHH
Confidence 3445778999999988865555556789999999999864221 122223333322 467 67899999986432221
Q ss_pred ---HHHHHHHHHHcC-----CcEEEeccCCCC
Q 031238 84 ---EEDGHSLAEKEG-----LSFLETSALEAT 107 (163)
Q Consensus 84 ---~~~~~~~~~~~~-----~~~~~~Sa~~~~ 107 (163)
.+++..+.+..+ .+++++||.++.
T Consensus 148 ~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 148 ELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 224445555454 479999999984
No 221
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.17 E-value=3.7e-10 Score=80.90 Aligned_cols=94 Identities=20% Similarity=0.088 Sum_probs=65.3
Q ss_pred hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH-----HHc
Q 031238 20 RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLA-----EKE 94 (163)
Q Consensus 20 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~ 94 (163)
.+..++..+++++|++++|+|++++..- |...+.... .++|+++|+||+|+... .........+. +..
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhc
Confidence 3577788899999999999999875311 111121112 35899999999998643 22333343333 233
Q ss_pred CC---cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 95 GL---SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 95 ~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
++ .++++||+++.|++++++.+.+.+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 33 689999999999999999998865
No 222
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.16 E-value=1e-09 Score=81.25 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=38.7
Q ss_pred CeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+|+++|+||+|+. ..++...+++. ..++++||+++.|++++|+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 6899999999984 34444445443 4689999999999999999988754
No 223
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.15 E-value=3.4e-10 Score=83.10 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=54.4
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++.+.+.||||||+.+|.......++.+|++++|+|++.+..... ...+..... .++|+++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 557899999999999998888899999999999999998755443 222222222 257999999999974
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=6.7e-10 Score=88.13 Aligned_cols=101 Identities=19% Similarity=0.112 Sum_probs=65.5
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~~~ 81 (163)
++....++.||||||+++|......-...+|++++|+|++.+.... ....+..+... ++|. |+++||+|+.+...
T Consensus 70 ~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~ 145 (394)
T TIGR00485 70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEE 145 (394)
T ss_pred EcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHH
Confidence 3444567899999999988654445567889999999998742221 12222333222 4665 56899999864322
Q ss_pred CC---HHHHHHHHHHcC-----CcEEEeccCCCC
Q 031238 82 VT---EEDGHSLAEKEG-----LSFLETSALEAT 107 (163)
Q Consensus 82 ~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~ 107 (163)
.. .++++.+.+..+ ++++++||.++.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 11 234555666554 579999999875
No 225
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.13 E-value=9.4e-10 Score=76.12 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=67.6
Q ss_pred EEEEEeCCCh----------hhHhhhhhhhhc---CCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 9 KAQIWDTAGQ----------ERYRAITSAYYR---GAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 9 ~l~l~Dt~G~----------~~~~~~~~~~~~---~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+.+|||+|. +.+......++. +.+++++++|.+...+ ...+..|+... +.|+++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEc
Confidence 6789999994 234444445554 4578999999986522 22333444332 4799999999
Q ss_pred CCCcccccC--CHHHHHHHHH--HcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 74 SDLNHLRAV--TEEDGHSLAE--KEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 74 ~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+|+...... .........+ ....+++++||+++.|+.++++.+.+.
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 998432211 1122222222 234578999999999999999998764
No 226
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.13 E-value=9.7e-10 Score=89.92 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=53.7
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++.+.+.+.+|||||+.+|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 74 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 74 FPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred EEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 344567899999999999887777789999999999999875322 23344433322 368999999999974
No 227
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.13 E-value=2.9e-10 Score=78.93 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=64.5
Q ss_pred HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEE
Q 031238 21 YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 21 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 100 (163)
++.+.++.++++|++|+|+|++++....+ ..+...+. ..++|+++|+||+|+...... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 35667888899999999999987543221 12222221 125899999999998532111 1111233445678999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 031238 101 TSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 101 ~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987764
No 228
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.11 E-value=9.1e-10 Score=88.60 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=72.5
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TEED 86 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~ 86 (163)
.+.|+|+||++.|-.....-+..+|++++|+|++.+.........+..+. ... -.++|+++||+|+.+.... ..++
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lg-i~~iIVvlNKiDlv~~~~~~~~~~e 195 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMK-LKHIIILQNKIDLVKEAQAQDQYEE 195 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcC-CCcEEEEEecccccCHHHHHHHHHH
Confidence 67899999999886655555788999999999986411112222222221 122 2468999999998642211 1223
Q ss_pred HHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 87 GHSLAEK---EGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 87 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..+.+. .+.+++++||++|.|++.+++.|.+.+
T Consensus 196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 3333332 246899999999999999988877644
No 229
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.10 E-value=1e-09 Score=82.73 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=54.0
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
++.+.+++.||||||+.+|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 66 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 66 FEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred EeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 455678899999999998887677788999999999999875332 22334333322 3689999999999854
No 230
>PRK09866 hypothetical protein; Provisional
Probab=99.10 E-value=1.8e-09 Score=88.84 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=72.4
Q ss_pred EEEEEEeCCChhh-----HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 8 VKAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.++.|.||||... ........+..+|+|+||+|++...+..+ ......+.+. +...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 4678999999753 22233457999999999999987533222 1223333332 213599999999998532322
Q ss_pred CHHHHHHHHHH----cCC---cEEEeccCCCCCHHHHHHHHHH
Q 031238 83 TEEDGHSLAEK----EGL---SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 83 ~~~~~~~~~~~----~~~---~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
..+....+.+. .++ .++++||++|.|++++++.+..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 24455444331 122 6999999999999999998876
No 231
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.10 E-value=7.1e-10 Score=89.14 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=72.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHH-------HHHHHHHHHHhhcCCCC-eEEEEeeCCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD-------NVLRWLRELRDHADSNI-VIMMAGNKSD 75 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-piivv~nK~D 75 (163)
......+.|+|+||+++|-......+..+|++|+|+|+++. +|+ .....+..... .++ ++|+++||+|
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD 156 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMD 156 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEccc
Confidence 44566889999999999987777888999999999999873 221 23332222221 245 5788999999
Q ss_pred CcccccC-------CHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 031238 76 LNHLRAV-------TEEDGHSLAEKEG-----LSFLETSALEATNVEK 111 (163)
Q Consensus 76 l~~~~~~-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 111 (163)
+.. ... ..++++.++++.+ ++++++||.+|+|+.+
T Consensus 157 ~~~-~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 157 ATT-PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCc-hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 752 111 1345666666666 4699999999999854
No 232
>PRK12289 GTPase RsgA; Reviewed
Probab=99.08 E-value=6e-10 Score=86.85 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=67.8
Q ss_pred HhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 21 YRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 21 ~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.+.+.+..++++|++++|+|++++. +...+..|+..... .++|+++|+||+||...... .........+++.++
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~ 153 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL 153 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence 3445566799999999999998765 34455666655422 36899999999999532211 222233346688999
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 031238 100 ETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 100 ~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.+||.++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999988653
No 233
>PRK12735 elongation factor Tu; Reviewed
Probab=99.08 E-value=1.5e-09 Score=86.20 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=64.6
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcccccC-
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNHLRAV- 82 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~- 82 (163)
....++.|+||||+++|......-+..+|++++|+|++....- ....++..+.. .++|.+ +++||+|+.+....
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~ 147 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELL 147 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHH
Confidence 3445789999999988866555667889999999999874321 22233333322 257755 68999998642221
Q ss_pred --CHHHHHHHHHHcC-----CcEEEeccCCCCC
Q 031238 83 --TEEDGHSLAEKEG-----LSFLETSALEATN 108 (163)
Q Consensus 83 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 108 (163)
..+++..+.+..+ ++++++||.++.|
T Consensus 148 ~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 148 ELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence 1224445555443 5789999999853
No 234
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.08 E-value=1.2e-09 Score=74.34 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=70.2
Q ss_pred EEEeCCCh----hhHhhhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 11 QIWDTAGQ----ERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 11 ~l~Dt~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.++||||. ..+....-....+||.|++|.|++++.+ |.. .+... -..|+|-|+||.|+.. .+...+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~-~~~~i~ 109 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS-DDANIE 109 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc-chhhHH
Confidence 57999994 3333333445668999999999998643 211 11111 2579999999999963 233456
Q ss_pred HHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHH
Q 031238 86 DGHSLAEKEGL-SFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 86 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
..+.+.+..|+ ++|++|+.+|+|++++.+.|-
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 66777777787 689999999999999988763
No 235
>PRK13351 elongation factor G; Reviewed
Probab=99.04 E-value=3.2e-09 Score=89.72 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
....++.||||||+.++...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 3456889999999999988888999999999999999987665544333 33332 268999999999984
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.02 E-value=2.8e-09 Score=84.91 Aligned_cols=104 Identities=26% Similarity=0.192 Sum_probs=66.7
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT-- 83 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-- 83 (163)
...++.||||||+++|......-+..+|++++|+|++.+..-. ....+..+... + ..++++++||+|+.+.....
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc-C-CCcEEEEEEecccccchHHHHH
Confidence 3457889999999988655556688999999999998653211 11111212211 2 24689999999985422111
Q ss_pred --HHHHHHHHHHcCC---cEEEeccCCCCCHHHH
Q 031238 84 --EEDGHSLAEKEGL---SFLETSALEATNVEKA 112 (163)
Q Consensus 84 --~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~ 112 (163)
.++...+.+..++ +++++||.+|+|+++.
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 1222333344443 6999999999998863
No 237
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.01 E-value=6.9e-10 Score=89.47 Aligned_cols=118 Identities=25% Similarity=0.299 Sum_probs=91.0
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcC--CCCeEEEEeeCCCCcccccC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD--SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~ 82 (163)
..+...+.|++....-+......++.+|++.++|+++++.+++.+. .|+..+++..+ ...|||+||||.|..+....
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 3445788999866555555677799999999999999999999985 89999988764 47999999999998665544
Q ss_pred CHHH-HHHHHHHc-CC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 83 TEED-GHSLAEKE-GL-SFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 83 ~~~~-~~~~~~~~-~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+. +..+...+ .+ .+++|||++..++.++|+.....+...
T Consensus 134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence 3333 44444443 23 589999999999999999877666543
No 238
>PRK00098 GTPase RsgA; Reviewed
Probab=99.01 E-value=9.9e-10 Score=84.09 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=62.5
Q ss_pred hcCCcEEEEEEECCChhHHHH-HHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 031238 29 YRGAVGALLVYDITKRQTFDN-VLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT 107 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 107 (163)
.+++|++++|+|++++.+... +..|+..+.. .++|+++|+||+|+.+.... ........+..+++++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCCc
Confidence 389999999999988765444 4566665543 36899999999998532221 222334455668899999999999
Q ss_pred CHHHHHHHHH
Q 031238 108 NVEKAFQTIL 117 (163)
Q Consensus 108 ~i~~~~~~l~ 117 (163)
|++++++.+.
T Consensus 154 gi~~L~~~l~ 163 (298)
T PRK00098 154 GLDELKPLLA 163 (298)
T ss_pred cHHHHHhhcc
Confidence 9999998775
No 239
>PRK13768 GTPase; Provisional
Probab=99.00 E-value=3.8e-09 Score=79.10 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=68.4
Q ss_pred EEEEEeCCChhhH---hhhhhhh---hcC--CcEEEEEEECCChhHHHHH--HHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 9 KAQIWDTAGQERY---RAITSAY---YRG--AVGALLVYDITKRQTFDNV--LRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 9 ~l~l~Dt~G~~~~---~~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+||+||+.+. +..+..+ +.+ ++++++++|+.......+. ..|+....... .++|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence 5789999998663 3333323 223 8999999999654322221 22222222111 3689999999999864
Q ss_pred cccCCH--HHHH------------------------HHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 79 LRAVTE--EDGH------------------------SLAEKEG--LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 79 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+... .... +..+..+ .+++++|+++++|++++++++.+.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 322210 0001 1122333 4789999999999999999987765
No 240
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.00 E-value=1.8e-09 Score=82.24 Aligned_cols=86 Identities=16% Similarity=0.062 Sum_probs=65.6
Q ss_pred hhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCC
Q 031238 28 YYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA 106 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 106 (163)
.++++|++++|+|++++. ++..+..|+..+... ++|+++|+||+||..... ......+....+++++.+||+++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence 388999999999999887 777777787765432 589999999999954311 11223334456889999999999
Q ss_pred CCHHHHHHHHHH
Q 031238 107 TNVEKAFQTILT 118 (163)
Q Consensus 107 ~~i~~~~~~l~~ 118 (163)
.|+++++..+..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999887764
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.98 E-value=2.3e-09 Score=86.89 Aligned_cols=105 Identities=26% Similarity=0.131 Sum_probs=66.2
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
....++.||||||+.+|......-+..+|++++|+|++.+..-.....+ ..+... + ..|+|+++||+|+.+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence 3445789999999988865444557999999999999865321111111 111111 1 247899999999864222111
Q ss_pred H----HHHHHHHHcC----CcEEEeccCCCCCHHHH
Q 031238 85 E----DGHSLAEKEG----LSFLETSALEATNVEKA 112 (163)
Q Consensus 85 ~----~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 112 (163)
+ +...+.+..+ .+++++||++|.|+.++
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 2222333333 57999999999999865
No 242
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.98 E-value=1.1e-08 Score=80.72 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=71.4
Q ss_pred EEEEEeCCChhhHh---------hhhhhhhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQERYR---------AITSAYYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.++||+|.+... ......+..||++|||+|...+.+ .+.+..|+. . .++|+++|+||+|-.
T Consensus 52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kpviLvvNK~D~~ 125 (444)
T COG1160 52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKPVILVVNKIDNL 125 (444)
T ss_pred eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCCEEEEEEcccCc
Confidence 48899999976322 233455778999999999987433 223334433 1 258999999999964
Q ss_pred ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+ ..+...++. ..|+ +++.+||.+|.|+.+++++++..+
T Consensus 126 ~----~e~~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 126 K----AEELAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred h----hhhhHHHHH-hcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 2 122223332 3465 799999999999999999999987
No 243
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.97 E-value=5.3e-09 Score=82.08 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=68.8
Q ss_pred hhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH----HHHHH
Q 031238 18 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH----SLAEK 93 (163)
Q Consensus 18 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~~ 93 (163)
.++|..+...++..++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+.. +....+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 4567788888889999999999997643 223334433333 579999999999864 333334433 34566
Q ss_pred cCC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238 94 EGL---SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 94 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
.++ .++.+||+++.|++++|+.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999988653
No 244
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.8e-08 Score=81.17 Aligned_cols=106 Identities=23% Similarity=0.226 Sum_probs=76.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
-.+.|.||||+..|..|+..=-+-+|++|+|+.++|+ ++.+.+ ......++|+||.+||+|.++... .
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI-------khAk~A~VpiVvAinKiDkp~a~p--e 271 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI-------KHAKSANVPIVVAINKIDKPGANP--E 271 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH-------HHHHhcCCCEEEEEeccCCCCCCH--H
Confidence 4678999999999999988777788999999999885 333322 222234799999999999754221 2
Q ss_pred HHHHHHH------HHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 85 EDGHSLA------EKEG--LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 85 ~~~~~~~------~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
...+++. +.+| .+++++||++|.|++.+-+.++-+..-
T Consensus 272 kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 272 KVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEV 317 (683)
T ss_pred HHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHH
Confidence 2233332 2333 368999999999999998888765443
No 245
>COG2262 HflX GTPases [General function prediction only]
Probab=98.96 E-value=1.9e-08 Score=78.53 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=74.9
Q ss_pred EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.+.+-||.|.-+ |.+..+. ...+|++++|+|++++...+.+..-..-+....-..+|+|+|.||.|+...
T Consensus 241 ~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 241 KVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred eEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 567889999632 4444433 668999999999999966555554444444443356999999999997532
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.. ....+....+ ..+.+||+++.|++.+++.|.+.+...
T Consensus 320 ~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 320 EE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 22 1111112222 589999999999999999988887643
No 246
>PRK12740 elongation factor G; Reviewed
Probab=98.94 E-value=1.3e-08 Score=85.82 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=52.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.+.||||||+.++...+...++.+|++++|+|++........ .++..+.. .++|+++|+||+|+.
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 456899999999998877778889999999999999886554433 22333332 268999999999974
No 247
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.94 E-value=7.4e-09 Score=81.98 Aligned_cols=108 Identities=18% Similarity=0.077 Sum_probs=74.4
Q ss_pred CEEEEEEEEeCCChhhHhhh--------hhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 5 GKTVKAQIWDTAGQERYRAI--------TSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
-..+.+.+.||+|.++-... ....++.||.+++|+|.+.+.+ .+....+ ....++|+++|.||.|
T Consensus 262 i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~D 335 (454)
T COG0486 262 LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKAD 335 (454)
T ss_pred ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechh
Confidence 34566889999998653322 2345889999999999998522 2221121 1234689999999999
Q ss_pred CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+........ ..-..+.+++.+|+++++|++.+.+.|.+.+...
T Consensus 336 L~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 336 LVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 965333211 1111244789999999999999999998887765
No 248
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=1.9e-08 Score=79.46 Aligned_cols=111 Identities=26% Similarity=0.175 Sum_probs=75.0
Q ss_pred EEEEEeCCChhhHhhh-----------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQERYRAI-----------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+.||+|.++-... ....+..+|++++|+|++.+-+-.+. .....+.+ .+.++++|+||+|+.
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~ 302 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLV 302 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccC
Confidence 4678999997653221 22447789999999999987554332 22222222 368999999999987
Q ss_pred ccccCCHHHHHHHH-HHcC----CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLA-EKEG----LSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+......++.+... +.+. .+.+++||+++.+++.+|+.+.......
T Consensus 303 ~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 303 EEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred CchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 65444444443332 2222 3789999999999999999888655443
No 249
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=9.2e-09 Score=80.20 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=65.1
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-CHHHHHHHHHHcCCcEEEeccCCCC
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-TEEDGHSLAEKEGLSFLETSALEAT 107 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 107 (163)
.+++|.+++|++++...++..+..|+..+.. .++|+++|+||+|+...... ............+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999877788888888765432 35899999999999542211 1122223334568899999999999
Q ss_pred CHHHHHHHHHH
Q 031238 108 NVEKAFQTILT 118 (163)
Q Consensus 108 ~i~~~~~~l~~ 118 (163)
|++++++.+..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998865
No 250
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=77.15 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=79.1
Q ss_pred EEEEEeCCChhhHhh----hh---hhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCC
Q 031238 9 KAQIWDTAGQERYRA----IT---SAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDL 76 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~----~~---~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl 76 (163)
++.+=|.||..+--. +. -..+.+|++++||+|++.+ +.++.+..++.++..+.+ .+.|.++|+||+|+
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 378889999643211 11 1346789999999999988 888888888888877655 57899999999998
Q ss_pred cccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
++.. .+...++++... -+++++||++++|+.++++.+.+
T Consensus 325 ~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 325 PEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hhHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 5311 222355555543 35999999999999999887765
No 251
>CHL00071 tufA elongation factor Tu
Probab=98.90 E-value=1.7e-08 Score=80.53 Aligned_cols=101 Identities=18% Similarity=0.110 Sum_probs=66.7
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC-
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV- 82 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~- 82 (163)
.+..++.|.||||+.+|.......+..+|++++|+|++.+.. ......+..+... ++| +|+++||+|+.+....
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~ 147 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELL 147 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHH
Confidence 344567899999998886665666889999999999986432 1222333333222 567 7789999998643221
Q ss_pred --CHHHHHHHHHHcC-----CcEEEeccCCCCCH
Q 031238 83 --TEEDGHSLAEKEG-----LSFLETSALEATNV 109 (163)
Q Consensus 83 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 109 (163)
..+++..+.+..+ ++++++||.+|.|+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 148 ELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 1224444544443 57899999998754
No 252
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.89 E-value=7.6e-09 Score=78.15 Aligned_cols=69 Identities=22% Similarity=0.167 Sum_probs=52.0
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
...++.||||||+.++...+...++.+|++|+|+|+.+...-. ...++..+.. .++|+++++||+|+.+
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 3467899999999988888888999999999999998753221 2233333332 2589999999999863
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.89 E-value=1.5e-08 Score=84.85 Aligned_cols=102 Identities=26% Similarity=0.178 Sum_probs=65.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH--
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE-- 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~-- 84 (163)
..++.|+||||+++|.......+..+|++++|+|++.+..- .....+..+... + ..+++|++||+|+.+......
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh-C-CCeEEEEEEecccccchhHHHHH
Confidence 34678999999998865445568899999999999765321 111111222222 1 357899999999853111111
Q ss_pred --HHHHHHHHHcCC---cEEEeccCCCCCHHH
Q 031238 85 --EDGHSLAEKEGL---SFLETSALEATNVEK 111 (163)
Q Consensus 85 --~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 111 (163)
.++..+.+..++ +++++||++|.|+++
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222333345454 589999999999875
No 254
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.87 E-value=1.9e-08 Score=81.04 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=68.0
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---H---HHHHHHHHHHHhhcCCCCe-EEEEeeCCCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVLRWLRELRDHADSNIV-IMMAGNKSDL 76 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 76 (163)
+.....+.|+||||+.+|-.....-+..+|++++|+|++.+.. + ......+..+... ++| +|+++||+|.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDD 157 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccc
Confidence 4455688999999999987766677889999999999986521 1 1222222222222 455 7899999995
Q ss_pred cc--ccc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 031238 77 NH--LRA----VTEEDGHSLAEKEG-----LSFLETSALEATNVEK 111 (163)
Q Consensus 77 ~~--~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 111 (163)
.. -.+ ...+++..+....+ ++++++|+.+|.|+.+
T Consensus 158 ~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 158 KTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 21 111 11233344444333 4689999999999864
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=98.87 E-value=4.7e-08 Score=77.69 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=64.1
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcccccC--
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNHLRAV-- 82 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~-- 82 (163)
+..++.|.||||+.+|.......+..+|++++|+|++.+..- ....++..+... ++|.+ +++||+|+.+....
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~ 148 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHH
Confidence 445788999999988866666668899999999999875321 222333333322 57865 68999998642221
Q ss_pred -CHHHHHHHHHHcC-----CcEEEeccCCCCC
Q 031238 83 -TEEDGHSLAEKEG-----LSFLETSALEATN 108 (163)
Q Consensus 83 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 108 (163)
...++..+....+ ++++.+||.++.+
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 1123334444333 5789999998753
No 256
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.86 E-value=2.1e-08 Score=73.91 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=71.5
Q ss_pred EEEEEEEeCCChhhHh-----hhhhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYR-----AITSAYYRGAVGALLVYDITKRQ---TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~-----~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+++||.||+..+. ......+++++++|||||+.+.+ .+......+..+.+.++ ++.+.|++.|.|+..
T Consensus 47 ~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 47 FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLS 125 (232)
T ss_dssp SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-
T ss_pred CcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCC
Confidence 3578999999996543 34677899999999999998432 34444556666666666 789999999999853
Q ss_pred c--ccCCH----HHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 79 L--RAVTE----EDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 79 ~--~~~~~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
. +.... +.+.+.+...+ +.++.+|.-+ +.+-++|..+++.+.
T Consensus 126 ~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 126 EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 2 11111 22233334445 6688888766 567777776666554
No 257
>PLN03127 Elongation factor Tu; Provisional
Probab=98.82 E-value=5.1e-08 Score=78.52 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=58.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 82 (163)
+....++.|.||||+.+|-.....-...+|++++|+|++.+..- .....+..+.. .++| +|+++||+|+.+....
T Consensus 120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~ 195 (447)
T PLN03127 120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEEL 195 (447)
T ss_pred cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHH
Confidence 33445789999999988755444456679999999999865321 12222222222 2578 5789999998642221
Q ss_pred C---HHHHHHHHHHc-----CCcEEEeccC
Q 031238 83 T---EEDGHSLAEKE-----GLSFLETSAL 104 (163)
Q Consensus 83 ~---~~~~~~~~~~~-----~~~~~~~Sa~ 104 (163)
. ..+..++.... .++++.+||.
T Consensus 196 ~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~ 225 (447)
T PLN03127 196 LELVEMELRELLSFYKFPGDEIPIIRGSAL 225 (447)
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEeccc
Confidence 1 11223333332 2468888875
No 258
>PLN03126 Elongation factor Tu; Provisional
Probab=98.80 E-value=3.5e-08 Score=79.98 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=66.0
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC--
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV-- 82 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~-- 82 (163)
+..++.|||+||+++|-.....-+..+|++++|+|++....- ....++..+... ++| +++++||+|+.+..+.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~ 217 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLE 217 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHH
Confidence 445788999999999866556667889999999999865322 223344333322 567 7889999998642221
Q ss_pred -CHHHHHHHHHHc-----CCcEEEeccCCCCC
Q 031238 83 -TEEDGHSLAEKE-----GLSFLETSALEATN 108 (163)
Q Consensus 83 -~~~~~~~~~~~~-----~~~~~~~Sa~~~~~ 108 (163)
..+++..+.+.. .++++.+||.++.+
T Consensus 218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 218 LVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 122444455543 35789999988854
No 259
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.80 E-value=9e-08 Score=72.19 Aligned_cols=88 Identities=22% Similarity=0.150 Sum_probs=59.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
..+.+.+|||||+.++...+...++.+|++++|+|+++......... +..+.. .++|+++++||+|+... . ..+
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~---~~~p~iivvNK~D~~~~-~-~~~ 135 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE---AGIPRIIFINKMDRERA-D-FDK 135 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCccCCC-C-HHH
Confidence 44678999999999887778888999999999999998654432222 223322 36899999999998642 1 122
Q ss_pred HHHHHHHHcCCcEE
Q 031238 86 DGHSLAEKEGLSFL 99 (163)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (163)
....+....+.+++
T Consensus 136 ~~~~l~~~~~~~~~ 149 (268)
T cd04170 136 TLAALQEAFGRPVV 149 (268)
T ss_pred HHHHHHHHhCCCeE
Confidence 33344444454433
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.78 E-value=5.5e-08 Score=75.00 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCeEEEEeeCCCCcccccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHH-HHHHHH
Q 031238 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQ-TILTEI 120 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~-~l~~~~ 120 (163)
.+|+|+++||.|+..... ....+.... ...++.+||+.+.+++++.+ .+.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 479999999999743221 111222233 44799999999999999887 477665
No 261
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.77 E-value=7.2e-08 Score=72.87 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=71.7
Q ss_pred ecCEEEEEEEEeCCChhh------Hhh------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEE
Q 031238 3 VEGKTVKAQIWDTAGQER------YRA------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA 70 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~------~~~------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 70 (163)
+..+.+++.|+||||... +.. ..+..+.+||.+++++|+++....-. ...+..+..+. .+|-++|
T Consensus 115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lv 191 (379)
T KOG1423|consen 115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILV 191 (379)
T ss_pred EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceee
Confidence 345678999999999532 111 12345778999999999986322110 12334444443 4888999
Q ss_pred eeCCCCcccc-------------cCCH---HHHHHHHHHc------------CC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 71 GNKSDLNHLR-------------AVTE---EDGHSLAEKE------------GL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 71 ~nK~Dl~~~~-------------~~~~---~~~~~~~~~~------------~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.||.|....+ .+.. +..+.+.... ++ .+|++||++|+||+++-++|+.+..
T Consensus 192 mnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 192 MNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred ccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 9999964321 1111 1111111111 11 3899999999999999999887653
No 262
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.77 E-value=1.6e-07 Score=72.73 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=89.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh----------HHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----------TFDNVLRWLRELRDHAD-SNIVIMMAGN 72 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~piivv~n 72 (163)
.-+...+.++|++||+..+.-|-+.+.++++||||.+++..+ -+.+...++..+....- .+.++|++.|
T Consensus 191 ~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN 270 (354)
T KOG0082|consen 191 TIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN 270 (354)
T ss_pred EeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence 444567899999999999999999999999999999997521 13344567777765433 5789999999
Q ss_pred CCCCccc---------------ccCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 73 KSDLNHL---------------RAVTEEDGHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 73 K~Dl~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
|.||-.. ..-..+.+..+... ..+-+..++|.+..+|+.+|..+.+.+.....+.
T Consensus 271 K~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~ 350 (354)
T KOG0082|consen 271 KKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD 350 (354)
T ss_pred cHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998211 11123333333221 1345678899999999999999999988766544
No 263
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.77 E-value=4.5e-08 Score=80.23 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=53.1
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++...+.+.||||||+.+|.......++.+|++|+|+|+++... .....++.... . .++|+++++||+|+.
T Consensus 75 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~-~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR-L--RDTPIFTFMNKLDRD 145 (527)
T ss_pred EeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH-h--cCCCEEEEEECcccc
Confidence 45567889999999999887766677899999999999987522 12234443332 2 358999999999985
No 264
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.8e-08 Score=67.97 Aligned_cols=112 Identities=15% Similarity=0.259 Sum_probs=83.4
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
.+++++-+|.+|+..-+..|..++..+|++++.+|+-|.+.|.+.+.-+..+..... ..+|+++.+||+|.+... ++
T Consensus 62 g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se 139 (193)
T KOG0077|consen 62 GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SE 139 (193)
T ss_pred cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cH
Confidence 356788999999999999999999999999999999999888887765555544432 579999999999986432 33
Q ss_pred HHHH------HHHHHcC-----------CcEEEeccCCCCCHHHHHHHHHHH
Q 031238 85 EDGH------SLAEKEG-----------LSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 85 ~~~~------~~~~~~~-----------~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
++.+ +.+-..+ +.++.||...+.+--+.|.|+...
T Consensus 140 ~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 140 DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 3321 1111111 247889999988888888776543
No 265
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=3.9e-08 Score=68.33 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=56.6
Q ss_pred hhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238 28 YYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
.++++|++++|+|+.++.. ...+..++. .. ..++|+++|+||+|+.+.... ......+.+.+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4789999999999988632 222333322 22 235899999999998532211 1122222222223357899999
Q ss_pred CCCHHHHHHHHHHHH
Q 031238 106 ATNVEKAFQTILTEI 120 (163)
Q Consensus 106 ~~~i~~~~~~l~~~~ 120 (163)
+.|++++++.+.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999887654
No 266
>PRK12739 elongation factor G; Reviewed
Probab=98.75 E-value=1.5e-07 Score=79.70 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=51.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+..++.||||||+.++...+...++.+|++|+|+|+.++..-.. ...+..+.. .++|+|+++||+|+.
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 34578999999999888788888999999999999987643222 233333332 258999999999985
No 267
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.75 E-value=6.1e-08 Score=82.02 Aligned_cols=95 Identities=18% Similarity=0.100 Sum_probs=63.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
...++.||||||+.++...+...++.+|++|+|+|++++...... .++..+.. .++|+++++||+|+.... ...
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~ 146 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLR 146 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHH
Confidence 356789999999998877788889999999999999876544332 23333332 258999999999986422 122
Q ss_pred HHHHHHHHcCC----cEEEeccCCC
Q 031238 86 DGHSLAEKEGL----SFLETSALEA 106 (163)
Q Consensus 86 ~~~~~~~~~~~----~~~~~Sa~~~ 106 (163)
....+....+. ..+.+|+..+
T Consensus 147 ~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 147 VVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHHHhCCCceeEEeccccCCC
Confidence 33344444343 2455566554
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.74 E-value=6.8e-08 Score=77.16 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=93.0
Q ss_pred ecCEEEEEEEEeCCChhhHh----hhhh----hhhcC-CcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238 3 VEGKTVKAQIWDTAGQERYR----AITS----AYYRG-AVGALLVYDITK--RQTFDNVLRWLRELRDHADSNIVIMMAG 71 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~----~~~~----~~~~~-~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~ 71 (163)
++.+-..++++||||..+.. ...+ ..+.. --+|+|+.|++. +.|..+...+|..|..... ++|+|+|.
T Consensus 210 ~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~Ilvl 288 (620)
T KOG1490|consen 210 LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVL 288 (620)
T ss_pred hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEe
Confidence 35566688999999963321 1000 11111 246888889974 6788888889999987766 78999999
Q ss_pred eCCCCcccccCCHHH---HHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHH
Q 031238 72 NKSDLNHLRAVTEED---GHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAA 131 (163)
Q Consensus 72 nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 131 (163)
||+|+....++.++. .+.+....+++++++|+.+.+|+-++-...++.++..+-++.++.
T Consensus 289 NK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 289 NKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred ecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 999987666665543 344555556899999999999999999999999988877665444
No 269
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=71.98 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=80.0
Q ss_pred EEEEEeCCChhhHhh----h---hhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCC
Q 031238 9 KAQIWDTAGQERYRA----I---TSAYYRGAVGALLVYDITKRQ---TFDNVLRWLRELRDHAD--SNIVIMMAGNKSDL 76 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~----~---~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl 76 (163)
.+.+=|.||.-+--+ + --..+.++.++++|+|++..+ ..++...+..++..+.+ .++|.+||+||+|+
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 477889998643211 1 123467899999999998543 46677777788877765 57999999999996
Q ss_pred cccccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
....+......+.+.+..+.. .+.+||.++.|++++...+.+.+.+..
T Consensus 288 ~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 288 PLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 543332233344444444432 222999999999999999988887765
No 270
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.72 E-value=8.7e-08 Score=72.98 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=77.0
Q ss_pred cCEEEEEEEEeCCChhh-----Hhhh---hhhhhc-CCcEEEEEEECC--ChhHHHHHHHHHHHHHhhcCCCCeEEEEee
Q 031238 4 EGKTVKAQIWDTAGQER-----YRAI---TSAYYR-GAVGALLVYDIT--KRQTFDNVLRWLRELRDHADSNIVIMMAGN 72 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~-----~~~~---~~~~~~-~~d~ii~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~piivv~n 72 (163)
+.+...+|++||||.-+ .+.. .-..++ =.++|+|+||++ .+.+.++...++.++..... .|+++|.|
T Consensus 211 e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~n 288 (346)
T COG1084 211 ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVIN 288 (346)
T ss_pred ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 44556899999999632 1111 011122 258899999998 46788888899999987765 89999999
Q ss_pred CCCCcccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 73 KSDLNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 73 K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
|.|+.+...+ +++.......+. ....+++..+.+++.+-+.+.....
T Consensus 289 K~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 289 KIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred cccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhh
Confidence 9998643332 333333333343 5888999999998877766665543
No 271
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.71 E-value=1e-07 Score=66.15 Aligned_cols=85 Identities=14% Similarity=-0.005 Sum_probs=55.1
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238 33 VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA 112 (163)
Q Consensus 33 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 112 (163)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988755432 22221 1111236899999999998532211 11112232333456899999999999999
Q ss_pred HHHHHHHHH
Q 031238 113 FQTILTEIY 121 (163)
Q Consensus 113 ~~~l~~~~~ 121 (163)
++.+.+.+.
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999987754
No 272
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.7e-07 Score=76.16 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=74.4
Q ss_pred EEEEEEeCCChhhH------hhhhhhh-h-cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERY------RAITSAY-Y-RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~------~~~~~~~-~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+++.|.||--.. +...+.+ + .+.|++|-|.|+++-+ .-..+--++.+. ++|++++.|..|..+.
T Consensus 50 ~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---RnLyltlQLlE~---g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 50 HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---RNLYLTLQLLEL---GIPMILALNMIDEAKK 123 (653)
T ss_pred ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---HHHHHHHHHHHc---CCCeEEEeccHhhHHh
Confidence 35789999994221 2233333 3 3569999999999843 222333333333 6899999999998665
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+.+ .-..+.+.+..|+++++++|++|.|++++...+.+.
T Consensus 124 ~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 124 RGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred cCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 544 334566778889999999999999999999888753
No 273
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.60 E-value=2e-07 Score=61.64 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=69.4
Q ss_pred EEeCCChh----hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 12 IWDTAGQE----RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 12 l~Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
.+||||.- .+.+.......++|++++|-.++++.+.-. ..+... ...|+|-|++|.||.++.+ .+..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~d--I~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDAD--ISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchHh--HHHH
Confidence 57899852 333334456889999999999998765211 111111 2467999999999975333 4556
Q ss_pred HHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238 88 HSLAEKEGL-SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 88 ~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+.+..+.|. ++|++|+.++.|+++++..|..
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 667777776 7999999999999999987754
No 274
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=2.4e-07 Score=65.32 Aligned_cols=92 Identities=15% Similarity=0.016 Sum_probs=60.6
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEe
Q 031238 22 RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET 101 (163)
Q Consensus 22 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
.......++++|++++|+|++.+..... ..+... . .++|+++|+||+|+..... .....++.+..+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----L-GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----h-cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 3344567899999999999987543211 112221 1 2478999999999853211 111112223334578999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 031238 102 SALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 102 Sa~~~~~i~~~~~~l~~~~~ 121 (163)
||+++.|++++.+.+...+.
T Consensus 82 Sa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ECCCcccHHHHHHHHHHHHH
Confidence 99999999999999888764
No 275
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.57 E-value=9.7e-07 Score=63.63 Aligned_cols=107 Identities=10% Similarity=0.147 Sum_probs=64.0
Q ss_pred EEEEEeCCChhhHhh-----hhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238 9 KAQIWDTAGQERYRA-----ITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHLRA- 81 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 81 (163)
.+.+|||+|...... +....+.++|+++++.+. . +.+. ..|+..+... +.|+++|+||+|+.....
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~ 125 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ 125 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence 579999999743211 222336788998888542 2 2233 2444444433 479999999999832111
Q ss_pred ----------CCHHHHHHHHH----HcC---CcEEEeccC--CCCCHHHHHHHHHHHHHH
Q 031238 82 ----------VTEEDGHSLAE----KEG---LSFLETSAL--EATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ----------~~~~~~~~~~~----~~~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~ 122 (163)
...+++++.+. ..+ .++|.+|+. .+.|+..+.+.++..+.+
T Consensus 126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 00112222222 222 268999998 567888888888887765
No 276
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.57 E-value=2.9e-07 Score=62.87 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.3
Q ss_pred hhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238 27 AYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 104 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 104 (163)
..++++|++++|+|+.++.+.. .+..|+... . .++|+++|+||+|+..+.. ........+..+..++++||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4588999999999998875533 333444322 1 3589999999999853221 123334445556789999998
Q ss_pred CCCC
Q 031238 105 EATN 108 (163)
Q Consensus 105 ~~~~ 108 (163)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8754
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.57 E-value=3e-07 Score=65.25 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=46.4
Q ss_pred EEEEEeCCChhhHhhhhhh---hhcCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhc---CCCCeEEEEeeCCCCcc
Q 031238 9 KAQIWDTAGQERYRAITSA---YYRGAVGALLVYDITK-RQTFDNVLRWLRELRDHA---DSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~---~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~ 78 (163)
.+.+.|+||+.+.+...-. +...+.+||||+|++. +..+.++..++-.+.... ...+|++|+.||+|+..
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 5789999999887653333 4888999999999974 445555544443333322 25799999999999854
No 278
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.57 E-value=5e-07 Score=71.68 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=81.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D 75 (163)
...+.++|++|++..+.-|.+++.++++||||+++++. ..+.+...++..+....- .+.|+||++||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 45689999999999999999999999999999998531 235566677777765533 5799999999999
Q ss_pred Cccc----------------cc--CCHHHHHHHHHHc------------CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 76 LNHL----------------RA--VTEEDGHSLAEKE------------GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 76 l~~~----------------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+... .. -..+.+..+.... .+.+..++|.+..++..+|+.+.+.+
T Consensus 315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 7210 11 2334444443321 12467889999999999998887653
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3.4e-07 Score=69.75 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=74.0
Q ss_pred EEEEEeCCChhhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--CC
Q 031238 9 KAQIWDTAGQERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VT 83 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--~~ 83 (163)
++.|.|.||++-... ..+.+ .|+.++|+.++.+-.-.+....+.-+. ..+ -+.+|++-||.|+..... ..
T Consensus 87 ~VSfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig-ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 87 RVSFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG-IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc-cceEEEEecccceecHHHHHHH
Confidence 568999999986543 33444 499999999986322112222222111 112 367999999999964322 24
Q ss_pred HHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 84 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
++++++|.+.. +.+++++||..+.||+.+++.|.+.+..
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 56777777654 4689999999999999999988877744
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.54 E-value=5.8e-07 Score=71.45 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=76.9
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+.+.+.+.+.||||+-+|....+..++-+|++++++|+.... +.+.+.-+...... +.+.|||+||+|.+..+.-.
T Consensus 64 ~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~ 139 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDE 139 (603)
T ss_pred ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHH
Confidence 445578999999999999999999999999999999998631 22333333333322 45667899999987655321
Q ss_pred -HHHHHHHHH-------HcCCcEEEeccCCCC----------CHHHHHHHHHHHHH
Q 031238 84 -EEDGHSLAE-------KEGLSFLETSALEAT----------NVEKAFQTILTEIY 121 (163)
Q Consensus 84 -~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 121 (163)
.++...+.. +..++++..|+..|. +..-+|+.|++.+.
T Consensus 140 Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 140 VVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred HHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 233333332 345688888887654 35566777666653
No 281
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=1.1e-06 Score=69.20 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=60.6
Q ss_pred hHhhhhhhhhcCCc-EEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH----HHHHHc
Q 031238 20 RYRAITSAYYRGAV-GALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH----SLAEKE 94 (163)
Q Consensus 20 ~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~~~ 94 (163)
.|...... +...+ .+++|+|+.+.. ..|...+.+... +.|+++|+||.|+.. .....+.+. .+++..
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 34444433 34445 999999998743 223334443333 579999999999964 233333333 335555
Q ss_pred CC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238 95 GL---SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 95 ~~---~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998654
No 282
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.2e-06 Score=60.31 Aligned_cols=68 Identities=24% Similarity=0.289 Sum_probs=49.6
Q ss_pred EEEEeCCChhhHhhhhhhhhc---CCcEEEEEEECCC-hhHHHHHH-HHHHHHHhh--cCCCCeEEEEeeCCCCc
Q 031238 10 AQIWDTAGQERYRAITSAYYR---GAVGALLVYDITK-RQTFDNVL-RWLRELRDH--ADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~~~~~~~---~~d~ii~v~d~~~-~~s~~~~~-~~~~~i~~~--~~~~~piivv~nK~Dl~ 77 (163)
+.+.|.||+.+.+.-...+++ .+-++|||+|..- .....++. .++.-+... ...+.|+++.-||.|+.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 678999999998877777777 7999999999863 33444444 334433333 23578999999999984
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.50 E-value=1.2e-06 Score=67.85 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=72.0
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--C
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--T 83 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~ 83 (163)
..+.+.|.||+|...-... ...-+|.++++.+...+..+..+.. .+.. +.-++|+||+|+...... .
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRA 215 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHH
Confidence 3567899999997633222 4667999999977555444433321 1111 223799999998642211 1
Q ss_pred HHHHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHH
Q 031238 84 EEDGHSLAEK-------EGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAA 131 (163)
Q Consensus 84 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 131 (163)
..+....... +..+++.+||+++.|++++++.+.+.+...........
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 1122222221 22479999999999999999999998776655444433
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.50 E-value=8.5e-07 Score=64.12 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=63.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
....+.++.|..-..... ..+ +|.+|.|+|+++..+... .+...+ ..--++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 456778888842111111 222 688999999987655321 111111 111278999999964212223344
Q ss_pred HHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 88 HSLAEK--EGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 88 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..+. .+.+++++||++|+|++++|+++.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444 356899999999999999999998654
No 285
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.50 E-value=1.1e-06 Score=66.61 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=60.1
Q ss_pred hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEecc
Q 031238 24 ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 24 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
.....++.+|++++|+|+..+.+... .++.... . ++|+++|+||+|+.+... .....++.+..+..++.+||
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~-~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---G-NKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---C-CCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 34566889999999999987644221 1111111 1 579999999999853211 11111222334567899999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 031238 104 LEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 104 ~~~~~i~~~~~~l~~~~~~ 122 (163)
+++.|++++.+.+.+.+..
T Consensus 86 ~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 9999999999888777643
No 286
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=8.2e-07 Score=69.60 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=68.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HH---HHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.-..+.+.+.|+||+++|-.-.-.-...||+.|+|+|+.+.+. |. ..+... ++.....-..+||++||+|..
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhcCCceEEEEEEccccc
Confidence 4455678999999999886554455778999999999987631 11 112111 111122245789999999986
Q ss_pred ccccCCHHH----HHHHHHHcCC-----cEEEeccCCCCCHHHH
Q 031238 78 HLRAVTEED----GHSLAEKEGL-----SFLETSALEATNVEKA 112 (163)
Q Consensus 78 ~~~~~~~~~----~~~~~~~~~~-----~~~~~Sa~~~~~i~~~ 112 (163)
+-++..+++ ...+.+..|+ +++++|+..|.|+.+.
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 422222222 2334444443 5999999999997653
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.2e-06 Score=67.43 Aligned_cols=97 Identities=29% Similarity=0.262 Sum_probs=66.0
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH--HHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL--RWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
++.+-||||++.|......=-..||+.|+++|+..+. +++.+ .++..+ .+ -..+++.+||+||.+-.+-.+++
T Consensus 87 kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sL---LG-IrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 87 KFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASL---LG-IRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred eEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHH---hC-CcEEEEEEeeecccccCHHHHHH
Confidence 6789999999999654333356799999999996532 22222 222222 22 36789999999997644333333
Q ss_pred ----HHHHHHHcCC---cEEEeccCCCCCHH
Q 031238 87 ----GHSLAEKEGL---SFLETSALEATNVE 110 (163)
Q Consensus 87 ----~~~~~~~~~~---~~~~~Sa~~~~~i~ 110 (163)
...++.+.++ .++++||..|.|+-
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3456677765 69999999999964
No 288
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.45 E-value=1.4e-06 Score=66.12 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=58.7
Q ss_pred ecCEEEEEEEEeCCChhhH--------------------------hhhhhhhhc--CCcEEEEEEECCChhHHHHH-HHH
Q 031238 3 VEGKTVKAQIWDTAGQERY--------------------------RAITSAYYR--GAVGALLVYDITKRQTFDNV-LRW 53 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~--------------------------~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~ 53 (163)
.+|..+.+.+|||||..+. ...+...+. ++|+++|+++.+... +... ...
T Consensus 58 ~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~ 136 (276)
T cd01850 58 ENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEF 136 (276)
T ss_pred ECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHH
Confidence 3577789999999994221 011112333 478888888876421 1111 222
Q ss_pred HHHHHhhcCCCCeEEEEeeCCCCccccc--CCHHHHHHHHHHcCCcEEEeccC
Q 031238 54 LRELRDHADSNIVIMMAGNKSDLNHLRA--VTEEDGHSLAEKEGLSFLETSAL 104 (163)
Q Consensus 54 ~~~i~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~ 104 (163)
+..+. . .+|+++|+||+|+....+ .....+.+.+...+++++.....
T Consensus 137 lk~l~---~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 137 MKRLS---K-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHh---c-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 33332 2 589999999999854222 23455667778888888876653
No 289
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.9e-06 Score=71.87 Aligned_cols=111 Identities=24% Similarity=0.231 Sum_probs=75.9
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc------
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL------ 79 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~------ 79 (163)
.+-++||||++.|..++.....-||..|+|+|+..+ +.++.+ +.++ ..+.|+||..||+|....
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCC
Confidence 357899999999999999989999999999999864 333332 2222 236899999999996321
Q ss_pred c-----------cCCH-------HHHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 80 R-----------AVTE-------EDGHSLAEKEG---------------LSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 80 ~-----------~~~~-------~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
. .+.. ..+.+|+.+ | +.++++||.+|+||-+++-+|++.......+
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQ-gLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQ-GLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-ccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 0 0100 111222221 2 1367999999999999999998876655444
Q ss_pred h
Q 031238 127 K 127 (163)
Q Consensus 127 ~ 127 (163)
+
T Consensus 693 k 693 (1064)
T KOG1144|consen 693 K 693 (1064)
T ss_pred H
Confidence 3
No 290
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.38 E-value=8.5e-07 Score=75.47 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=52.4
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+++..+++.||||||+.+|.......++.+|++|+|+|+..+........ +..... .+.|+++++||+|..
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHHH---cCCCEEEEEEChhcc
Confidence 45667899999999999888777888999999999999987532222112 222221 256888999999974
No 291
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.37 E-value=2.6e-06 Score=64.95 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=63.8
Q ss_pred CCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH
Q 031238 15 TAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK 93 (163)
Q Consensus 15 t~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 93 (163)
.||+..- .......++.+|++++|+|+.++.+... .++.... . ++|+++|.||+|+.+... .+....+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 3555322 2234556889999999999987643221 1122221 1 579999999999853211 1112222233
Q ss_pred cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 94 EGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 94 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+..++.+||+++.|++++++.+...+..
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 45678999999999999999888777644
No 292
>PRK01889 GTPase RsgA; Reviewed
Probab=98.37 E-value=2.3e-06 Score=67.20 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=55.8
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHH-HcCCcEEEeccCCCC
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE-KEGLSFLETSALEAT 107 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 107 (163)
.+++|.+++|++++.+-....+..++...... +++.++|+||+||.+.. .+....+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997433333444444443322 57778999999996421 112222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 031238 108 NVEKAFQTIL 117 (163)
Q Consensus 108 ~i~~~~~~l~ 117 (163)
|++++...+.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888774
No 293
>PRK00007 elongation factor G; Reviewed
Probab=98.32 E-value=5.5e-06 Score=70.32 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=61.3
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
..++.|.||||+.++.......++.+|++|+|+|+..+..... ...+..+... ++|+|+++||+|+.+.. ....
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~ 147 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD--FYRV 147 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC--HHHH
Confidence 4578999999998887666777889999999999986643332 2223333322 57899999999986422 2233
Q ss_pred HHHHHHHcCC----cEEEeccCCC
Q 031238 87 GHSLAEKEGL----SFLETSALEA 106 (163)
Q Consensus 87 ~~~~~~~~~~----~~~~~Sa~~~ 106 (163)
.+.+.+.++. ..+++|+..+
T Consensus 148 ~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 148 VEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHhCCCeeeEEecCccCCc
Confidence 3444444443 2455566554
No 294
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.31 E-value=2.4e-06 Score=65.52 Aligned_cols=105 Identities=18% Similarity=0.053 Sum_probs=64.8
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH-
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE- 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~- 84 (163)
..+.+.|.||+|..... ......+|.++++-+.... +++......+ .++|.++|+||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHH
Confidence 35678999999864222 2346678888888544433 3333222222 1467899999999864321110
Q ss_pred -HH----HHHHHH---HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 85 -ED----GHSLAE---KEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 85 -~~----~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.. ...+.. .+..+++++||+++.|++++++++.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 011111 12236899999999999999999998754
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.31 E-value=7.5e-06 Score=59.48 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=61.2
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
..+.+.+|.|.-.... .+.-..+..+.|+|+.+.+... ... ... ...|.++++||+|+.+.........
T Consensus 103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHHHH
Confidence 4677888888311110 1112356667788887643211 110 111 1367899999999964322223334
Q ss_pred HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 88 HSLAEKE--GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 88 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
....+.. ..+++++||++++|++++|+++.+.
T Consensus 172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4344433 3689999999999999999999874
No 296
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.29 E-value=1.6e-05 Score=56.91 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=69.4
Q ss_pred EEEEeCCC----------hhhHhhhhhhhhcC---CcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 10 AQIWDTAG----------QERYRAITSAYYRG---AVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 10 l~l~Dt~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
+.|.|.|| .+.+..+...|++. -.++++++|+..+.... ++.+|+.. .++|++|++||+
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~ 145 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKA 145 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEcc
Confidence 67899998 34555666666654 47889999998764432 23345443 269999999999
Q ss_pred CCcccccCCHHHHHHHHHHcC----Cc--EEEeccCCCCCHHHHHHHHHHHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEKEG----LS--FLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
|-.+.... .......++..+ .. ++..|+.++.|++++.+.|.+.+.
T Consensus 146 DKi~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 146 DKLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccCChhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 97653332 122222332222 22 778899999999999888887664
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.27 E-value=5.2e-06 Score=61.68 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=56.1
Q ss_pred EEEEEeCCChhhHhhhhhhhh--------cCCcEEEEEEECC---ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDIT---KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.++|||||.+....+...- ...-++++++|+. ++..|-... +..+.-....+.|.|.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH--HHHHHHHhhCCCCEEEeeeccCcc
Confidence 578999999987654443332 3566889999986 344443221 111111111268999999999996
Q ss_pred cccc------------C-------CHHHHHHHHH---HcCC--cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 78 HLRA------------V-------TEEDGHSLAE---KEGL--SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 78 ~~~~------------~-------~~~~~~~~~~---~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.... . .......+++ .++. .++.+|+.+++++++++..+-+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 4210 0 0001112222 2232 699999999999999988776543
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.8e-06 Score=66.46 Aligned_cols=90 Identities=21% Similarity=0.183 Sum_probs=62.8
Q ss_pred CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
|.+++....++|.||||+++|..-.-..+.-+|..|+|+|+..+..-. ..+++. +.+. .+.||+-++||.|.....
T Consensus 74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfe-Vcrl--R~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFE-VCRL--RDIPIFTFINKLDREGRD 149 (528)
T ss_pred EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHH-HHhh--cCCceEEEeeccccccCC
Confidence 457788889999999999998776666788899999999998653322 233332 2222 479999999999975433
Q ss_pred cCCHHHHHHHHHHcCC
Q 031238 81 AVTEEDGHSLAEKEGL 96 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (163)
+ .+...++.+..++
T Consensus 150 P--~ELLdEiE~~L~i 163 (528)
T COG4108 150 P--LELLDEIEEELGI 163 (528)
T ss_pred h--HHHHHHHHHHhCc
Confidence 2 3445555555444
No 299
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.22 E-value=1.1e-05 Score=59.07 Aligned_cols=69 Identities=22% Similarity=0.397 Sum_probs=50.1
Q ss_pred EEEEEEeCCChhhH-----hhhhhhhhcCCcEEEEEEECCChhHHHHH---HHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.|.+||.+|++.+ .......+++++++++|||+...+--.++ ..-++.+.+..+ ...+++...|.|+.
T Consensus 53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLV 129 (295)
T ss_pred heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhc
Confidence 56789999999854 22455678999999999999865433333 344455555555 67899999999984
No 300
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.20 E-value=3.4e-05 Score=59.03 Aligned_cols=112 Identities=24% Similarity=0.164 Sum_probs=73.8
Q ss_pred ecCEEEEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECCChhH-HHHHHH----------------------
Q 031238 3 VEGKTVKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQT-FDNVLR---------------------- 52 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~---------------------- 52 (163)
++++..++|+.|+||.-..- ...-...++||.+++|+|+..... .+-+..
T Consensus 105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~ 184 (365)
T COG1163 105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE 184 (365)
T ss_pred EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence 56777889999999864322 122345789999999999985443 322211
Q ss_pred ----------------------HHHHHHh------------------h-cC--CCCeEEEEeeCCCCcccccCCHHHHHH
Q 031238 53 ----------------------WLRELRD------------------H-AD--SNIVIMMAGNKSDLNHLRAVTEEDGHS 89 (163)
Q Consensus 53 ----------------------~~~~i~~------------------~-~~--~~~piivv~nK~Dl~~~~~~~~~~~~~ 89 (163)
.+.+..- . .. .=+|.++|.||.|+.. .+....
T Consensus 185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~ 259 (365)
T COG1163 185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELER 259 (365)
T ss_pred cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHH
Confidence 1111000 0 00 0178999999999853 344444
Q ss_pred HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 90 LAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 90 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.+.. .++.+||..+.|++++.+.+.+.+-
T Consensus 260 l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 260 LARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 44433 7999999999999999999988663
No 301
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.19 E-value=1.3e-05 Score=52.67 Aligned_cols=76 Identities=28% Similarity=0.352 Sum_probs=55.8
Q ss_pred hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238 25 TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 104 (163)
Q Consensus 25 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 104 (163)
...+++.++++++||+.++..+++.+ |...+....+.+.|+++++||.|+.+...+..+... .++++|++
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~ 109 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAK 109 (124)
T ss_pred cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCC
Confidence 45568889999999999999998765 777666555557889999999998543344433333 34567889
Q ss_pred CCCCHH
Q 031238 105 EATNVE 110 (163)
Q Consensus 105 ~~~~i~ 110 (163)
++.|+.
T Consensus 110 ~~~~~~ 115 (124)
T smart00010 110 TPEEGE 115 (124)
T ss_pred Ccchhh
Confidence 998874
No 302
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.18 E-value=2.4e-05 Score=62.24 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH-HHHHHHH
Q 031238 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEK-AFQTILT 118 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~ 118 (163)
.+|+|+|+||.|+..... ....+.+..+..++.+||+.+.++.+ +.+.+++
T Consensus 217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~ 268 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLID 268 (396)
T ss_pred CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence 489999999999742111 12222222345799999999999888 4444444
No 303
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.16 E-value=9.8e-06 Score=46.31 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=31.7
Q ss_pred CcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 32 AVGALLVYDITK--RQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 32 ~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.++++|++|++. +.++++...++.+++.... ++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 578999999984 5788888899999988875 699999999998
No 304
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=2.1e-05 Score=59.85 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=68.0
Q ss_pred hHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcE
Q 031238 20 RYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSF 98 (163)
Q Consensus 20 ~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
+.+.+.+.-+.+.|-+++++.+.+|+ +..-+..++..... .++..++++||.||.+..+...++...+....|+++
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v 144 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV 144 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence 34556666777889999999998875 34444444433322 256667789999997644433345666777789999
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 031238 99 LETSALEATNVEKAFQTILT 118 (163)
Q Consensus 99 ~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+.+|++++.+++++.+.+..
T Consensus 145 ~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 145 LFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEecCcCcccHHHHHHHhcC
Confidence 99999999999998887753
No 305
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.06 E-value=1.5e-05 Score=69.01 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=52.0
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.+.|+||||+.+|.......++.+|+.|+|+|+..+...... ..+..+.. .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence 367889999999999987777888999999999999876443322 22333322 368999999999975
No 306
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=6.4e-05 Score=59.60 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=72.1
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
..+.|.|.+|++++-...-.-+...|..++|+++++.-..... ..+.- .+..+ -...++|+||.|..+...+ .+.+
T Consensus 50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtg-EhL~i-Ldllg-i~~giivltk~D~~d~~r~-e~~i 125 (447)
T COG3276 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTG-EHLLI-LDLLG-IKNGIIVLTKADRVDEARI-EQKI 125 (447)
T ss_pred CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhH-HHHHH-HHhcC-CCceEEEEeccccccHHHH-HHHH
Confidence 3678999999998755444556789999999999754222111 11111 12222 2456899999998653322 2233
Q ss_pred HHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 88 HSLAEKE---GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 88 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+++.... ..+++.+|+++|+||+++-+.|.....
T Consensus 126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 3333322 357899999999999999998888774
No 307
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.04 E-value=1.3e-05 Score=68.50 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=51.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++..+.+.|+||||+.+|.......++.+|++|+|+|+..+..... ...+...... +.|.|+++||+|+.
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc---CCCeEEEEECchhh
Confidence 4457789999999999988777888999999999999987533222 2222222222 46779999999974
No 308
>PTZ00416 elongation factor 2; Provisional
Probab=98.04 E-value=1.6e-05 Score=68.87 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=51.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
...+.|+||||+.+|.......++.+|++|+|+|+..+..... ...+..+... ++|+|+++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence 5678999999999987777788999999999999987643322 2333333322 57999999999985
No 309
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.03 E-value=3.8e-05 Score=62.67 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=78.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
.|....+.+-|.+.. ....+...- ..||++.++||.+++.+|.-+...++.-... ...|++.|++|.|+.+..+..
T Consensus 470 ~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~ 545 (625)
T KOG1707|consen 470 KGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRY 545 (625)
T ss_pred ccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhcc
Confidence 345556667776654 333333333 7899999999999999998776655544333 479999999999996544322
Q ss_pred HHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.-+-.++++++++ +.+.+|.++.-. .++|..|.......
T Consensus 546 ~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 546 SIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYP 585 (625)
T ss_pred CCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCC
Confidence 2223778999998 567777775333 78888877665443
No 310
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.01 E-value=4e-05 Score=57.20 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=78.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D 75 (163)
.+.+..+|.+|+++.+.-|-..+.+.-++|||...+.. ..+.+...++..+=+..- ..+.+|++.||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 45678999999999999999999999999999987541 122233333333322111 3578999999999
Q ss_pred Cccc----------------------------ccCCHHH--HHHHHHH--------c-----CCcEEEeccCCCCCHHHH
Q 031238 76 LNHL----------------------------RAVTEED--GHSLAEK--------E-----GLSFLETSALEATNVEKA 112 (163)
Q Consensus 76 l~~~----------------------------~~~~~~~--~~~~~~~--------~-----~~~~~~~Sa~~~~~i~~~ 112 (163)
+... ....... .+-+.+. . -+.+.+++|.+.++|..+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 8210 0011111 1111111 1 124678899999999999
Q ss_pred HHHHHHHHHHHHhHh
Q 031238 113 FQTILTEIYHIISKK 127 (163)
Q Consensus 113 ~~~l~~~~~~~~~~~ 127 (163)
|+.....+..+...+
T Consensus 361 FnDcrdiIqr~hlrq 375 (379)
T KOG0099|consen 361 FNDCRDIIQRMHLRQ 375 (379)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887766554
No 311
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.4e-05 Score=62.76 Aligned_cols=118 Identities=21% Similarity=0.188 Sum_probs=71.7
Q ss_pred EEEEEEEEeCCChhhH-h--------hhhhhhhcCCcEEEEEEEC--CChhHHHHHHHHHHHHHhhcC------CCCeEE
Q 031238 6 KTVKAQIWDTAGQERY-R--------AITSAYYRGAVGALLVYDI--TKRQTFDNVLRWLRELRDHAD------SNIVIM 68 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~-~--------~~~~~~~~~~d~ii~v~d~--~~~~s~~~~~~~~~~i~~~~~------~~~pii 68 (163)
..+.+.|.||+|.++. . ...+..+..+|++++|+|+ .+-.+...+...+.....-.. ...|++
T Consensus 314 ~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i 393 (531)
T KOG1191|consen 314 NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRII 393 (531)
T ss_pred CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceE
Confidence 3455778899998661 1 1234557889999999999 343333333333333322111 247899
Q ss_pred EEeeCCCCccc-ccCCHHHHHHHHHHcC---Cc-EEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 69 MAGNKSDLNHL-RAVTEEDGHSLAEKEG---LS-FLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 69 vv~nK~Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
++.||.|+..+ ...... ...+....+ ++ +.++|+++++|++++...+...+....
T Consensus 394 ~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 394 LVANKSDLVSKIPEMTKI-PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred EEechhhccCccccccCC-ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 99999998543 111110 111111122 33 456999999999999999998886654
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=1.7e-05 Score=67.04 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=52.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.++|+||||+.+|.......++-+|+.|+|+|+........-.-|. +..+ .++|.++++||.|.
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r-qa~~---~~vp~i~fiNKmDR 140 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR-QADK---YGVPRILFVNKMDR 140 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH-HHhh---cCCCeEEEEECccc
Confidence 578999999999999999999999999999999998765443333333 3332 36899999999996
No 313
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.1e-05 Score=65.22 Aligned_cols=70 Identities=26% Similarity=0.353 Sum_probs=55.7
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+++.+-+++.||||+..+.......++-+|++++++|+-.+..++.- .++.... ....|+++|+||.|.
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai---q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI---QNRLPIVVVINKVDR 261 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH---hccCcEEEEEehhHH
Confidence 367888999999999999988888889999999999999887766433 2222222 236899999999995
No 314
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=3e-05 Score=63.23 Aligned_cols=107 Identities=24% Similarity=0.214 Sum_probs=66.8
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHH---HHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFD---NVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
++.....+.|.|+||+..|-.-.-.-...+|+.|+|+|++..+ .|+ .++... .+.+..+ -..+||++||.|+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lg-i~qlivaiNKmD~ 327 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLG-ISQLIVAINKMDL 327 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcC-cceEEEEeecccc
Confidence 3455667899999998887655445566799999999997531 122 122222 2222223 3578999999998
Q ss_pred cccccCCHHHH----HHHH-HHcC-----CcEEEeccCCCCCHHH
Q 031238 77 NHLRAVTEEDG----HSLA-EKEG-----LSFLETSALEATNVEK 111 (163)
Q Consensus 77 ~~~~~~~~~~~----~~~~-~~~~-----~~~~~~Sa~~~~~i~~ 111 (163)
.+=.+-..+++ ..+. +..| +.+++||+.+|+|+..
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 54222122332 2233 3334 3699999999999653
No 315
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.89 E-value=0.00033 Score=50.27 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=61.8
Q ss_pred EEEEEEeCCChhhHh--------hh---hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCC
Q 031238 8 VKAQIWDTAGQERYR--------AI---TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~--------~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~ 74 (163)
..+.++||||..+.. .+ ......+.|++++|+++.+. +-+ ....+..+....+ .-.+++++.|+.
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEE-EEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHH-HHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 368999999964321 11 11224678999999999862 211 1223333333322 125789999999
Q ss_pred CCcccccC------CHHHHHHHHHHcCCcEEEeccC-----CCCCHHHHHHHHHHHH
Q 031238 75 DLNHLRAV------TEEDGHSLAEKEGLSFLETSAL-----EATNVEKAFQTILTEI 120 (163)
Q Consensus 75 Dl~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~-----~~~~i~~~~~~l~~~~ 120 (163)
|......+ .....+.+.+..+-.|+..+.+ .+.++.++++.+.+.+
T Consensus 127 d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 127 DDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred cccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 96432211 1133455555556566555543 4445666665555444
No 316
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.86 E-value=0.00017 Score=53.07 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=55.6
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCccccc-CC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRA-VT 83 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~-~~ 83 (163)
...++.++||||.. ..+. ...+.+|++++++|++.+..... ..++..+... +.| +++|+||.|+..... ..
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~ 153 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLR 153 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHH
Confidence 34567899999864 2222 34688999999999986433222 1222322222 466 455999999853221 10
Q ss_pred --HHHHHH-HHHHc--CCcEEEeccCCCCC
Q 031238 84 --EEDGHS-LAEKE--GLSFLETSALEATN 108 (163)
Q Consensus 84 --~~~~~~-~~~~~--~~~~~~~Sa~~~~~ 108 (163)
...++. +.... +.+++.+||++...
T Consensus 154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 111222 22211 34799999998854
No 317
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.85 E-value=0.00016 Score=47.29 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=38.3
Q ss_pred EEEEEeCCChhh----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 9 KAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 9 ~l~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+.|+||||... +....+. +..+|++++|+|++++.. +....++..+. .+.|+++|+||
T Consensus 48 ~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 48 KFILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp EEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred eEEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 357999999632 1223333 488999999999887422 22233334442 36899999998
No 318
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.84 E-value=0.00045 Score=52.04 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=66.1
Q ss_pred EEEEEEEeCCChhhH------hhhhhhhhc--CCcEEEEEEECCC---hhHHH-HHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 7 TVKAQIWDTAGQERY------RAITSAYYR--GAVGALLVYDITK---RQTFD-NVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~------~~~~~~~~~--~~d~ii~v~d~~~---~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.....++||||+.+- ..+....++ ..-+++|++|... +..|= +.......+. ....|+|++.||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEecc
Confidence 356789999998541 222222232 3567788888743 33332 2222222222 1369999999999
Q ss_pred CCcccc---c--CCHHHHHHHHH------------H---------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 75 DLNHLR---A--VTEEDGHSLAE------------K---------EGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 75 Dl~~~~---~--~~~~~~~~~~~------------~---------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
|+.+.. . -..+..++-.. . .++..+.+|+.+|.|.+++|..+-+.+-..
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 985421 0 00111111111 1 145689999999999999999887665443
No 319
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.82 E-value=0.00014 Score=59.26 Aligned_cols=120 Identities=22% Similarity=0.411 Sum_probs=87.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~- 79 (163)
.+++....+-+.|.+|... ..|-..+|++||||.+.+.++|+.+..+...+-.+.. ..+|+++++++.-+...
T Consensus 71 vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~ 145 (749)
T KOG0705|consen 71 VVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKR 145 (749)
T ss_pred EeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhccc
Confidence 3466666777778777332 4677889999999999999999888776665544433 46888888887654322
Q ss_pred -ccCCHHHHHHH-HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 80 -RAVTEEDGHSL-AEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 80 -~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
+.+.+.....+ ++...+.||+.++.+|.+++.+|+.+...+......
T Consensus 146 ~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 146 PRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKY 194 (749)
T ss_pred ccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhh
Confidence 34444444444 445567899999999999999999999888776433
No 320
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.68 E-value=0.0013 Score=50.75 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=45.7
Q ss_pred CCeEEEEeeCCCC----cccccCC-------HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 64 NIVIMMAGNKSDL----NHLRAVT-------EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 64 ~~piivv~nK~Dl----~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
++|++||.+|+|. ....+.. ...++.||-.+|...+.+|++...|++-+...|.+.++-
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 4899999999997 3222222 234566777788899999999999999999999887754
No 321
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.65 E-value=0.00031 Score=52.82 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=70.9
Q ss_pred EEEEEeCCChhh-------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238 9 KAQIWDTAGQER-------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL-- 79 (163)
Q Consensus 9 ~l~l~Dt~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~-- 79 (163)
.+.|||+||..+ |+.....++...|.++.+.++.|+.---+ ..+++.+....- +.++++++|..|....
T Consensus 88 ~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 88 NLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhcccc
Confidence 478999999754 66667778889999999999987621111 123333333322 4899999999996322
Q ss_pred ------ccCCHHHHHHHH-------HHc--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 ------RAVTEEDGHSLA-------EKE--GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 ------~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
..-+....+.+. +-. -.+++..+...+-|++++..+++..+.
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111121111111 111 236788888999999999998887664
No 322
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.60 E-value=0.001 Score=52.42 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=62.0
Q ss_pred EEEEEeCCChhhHh-h-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--H
Q 031238 9 KAQIWDTAGQERYR-A-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--E 84 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~-~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~ 84 (163)
-+.|.||.|++.|- . ++-..-+..|-.++++.+++..+-- .+..+--+.. .+.|+|++.||+|+..+..+. .
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence 46799999999873 2 3333445789999999998865421 1222222221 269999999999985321110 1
Q ss_pred HHHHHH----------------------HHHcC---CcEEEeccCCCCCHHHHHH
Q 031238 85 EDGHSL----------------------AEKEG---LSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 85 ~~~~~~----------------------~~~~~---~~~~~~Sa~~~~~i~~~~~ 114 (163)
+++..+ +-+.+ .++|.+|+.+|+|++-+.+
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 111111 11111 3789999999999765544
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0003 Score=53.42 Aligned_cols=92 Identities=24% Similarity=0.209 Sum_probs=58.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCC-eEEEEeeCCCCcccccCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNI-VIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~-piivv~nK~Dl~~~~~~~ 83 (163)
-++-..|.||+.+|-...-.--...|+.|+|+++++. +.-+.+ ...+++ ++ .++++.||+|+.++.+..
T Consensus 75 rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv---Gvp~ivvflnK~Dmvdd~ell 147 (394)
T COG0050 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV---GVPYIVVFLNKVDMVDDEELL 147 (394)
T ss_pred ceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc---CCcEEEEEEecccccCcHHHH
Confidence 3556789999998854333335668999999999874 233222 111222 45 478899999997654432
Q ss_pred ---HHHHHHHHHHcCC-----cEEEeccCCC
Q 031238 84 ---EEDGHSLAEKEGL-----SFLETSALEA 106 (163)
Q Consensus 84 ---~~~~~~~~~~~~~-----~~~~~Sa~~~ 106 (163)
.-+..++..++++ +++.-||...
T Consensus 148 elVemEvreLLs~y~f~gd~~Pii~gSal~a 178 (394)
T COG0050 148 ELVEMEVRELLSEYGFPGDDTPIIRGSALKA 178 (394)
T ss_pred HHHHHHHHHHHHHcCCCCCCcceeechhhhh
Confidence 2345667777765 4666676443
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.58 E-value=0.0004 Score=51.69 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=43.5
Q ss_pred EEEEEEeCCChhh-------------Hhhhhhhhhc-CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 8 VKAQIWDTAGQER-------------YRAITSAYYR-GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 8 ~~l~l~Dt~G~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+.|.|+||... ...+...|++ ..+++++|+|++..-.-.+...+...+. +.+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4678999999742 2335566777 4569999999875322112222233322 236899999999
Q ss_pred CCCcc
Q 031238 74 SDLNH 78 (163)
Q Consensus 74 ~Dl~~ 78 (163)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99854
No 325
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00085 Score=52.14 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=61.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHH-HHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLR-WLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.++.+++.|.|.||+... .+..+.+ .|..++|+|+..+..-....- .+-++. -...+||+||.|....
T Consensus 66 q~e~lq~tlvDCPGHasL---IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASL---IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPE 137 (522)
T ss_pred ccccceeEEEeCCCcHHH---HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccc
Confidence 356788899999998654 3444444 488899999975322111111 112211 2346778888886322
Q ss_pred --ccCCHH-HHHHHHH---HcC----CcEEEeccCCC----CCHHHHHHHHHHHH
Q 031238 80 --RAVTEE-DGHSLAE---KEG----LSFLETSALEA----TNVEKAFQTILTEI 120 (163)
Q Consensus 80 --~~~~~~-~~~~~~~---~~~----~~~~~~Sa~~~----~~i~~~~~~l~~~~ 120 (163)
+.-..+ ......+ ..+ .+++++||..| ++|.++.+.|.+.+
T Consensus 138 ~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 138 NQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 221111 1222222 222 47999999999 55666555555444
No 326
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.56 E-value=0.0014 Score=53.32 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=77.0
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcC----CcEEEEEEECCChhH-HHHHHHHHHHHHh----------------------
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRG----AVGALLVYDITKRQT-FDNVLRWLRELRD---------------------- 59 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s-~~~~~~~~~~i~~---------------------- 59 (163)
..++.+|-..|...+..+....+.. --+||+|.|.+.|-. ++.+..|+.-+..
T Consensus 72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~ 151 (472)
T PF05783_consen 72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ 151 (472)
T ss_pred CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3468899998876676665554442 257888999998733 3333333332222
Q ss_pred ---hc-------------------------------------CCCCeEEEEeeCCCCc----ccccCC-------HHHHH
Q 031238 60 ---HA-------------------------------------DSNIVIMMAGNKSDLN----HLRAVT-------EEDGH 88 (163)
Q Consensus 60 ---~~-------------------------------------~~~~piivv~nK~Dl~----~~~~~~-------~~~~~ 88 (163)
+. +-++|++||.+|+|.. ...... ...++
T Consensus 152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR 231 (472)
T PF05783_consen 152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR 231 (472)
T ss_pred HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence 00 0138999999999952 212221 22345
Q ss_pred HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 89 SLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 89 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+|-.+|...+.+|++...+++.++..|.+.++..
T Consensus 232 ~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 232 TFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred HHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 66777888999999999999999998888887654
No 327
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.001 Score=49.31 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=70.4
Q ss_pred EEEEEEEEeCCChhhHhh---hhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc-c
Q 031238 6 KTVKAQIWDTAGQERYRA---ITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH-L 79 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~ 79 (163)
.-+.+++||.||+..+-. --...++++.++|+|+|+-+. +.+..+...+....+.++ ++.+=|++.|.|-.. +
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp-~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNP-NINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCC-CceEEEEEEeccCCchh
Confidence 346789999999965421 234678999999999998653 233333334444344444 678888999999532 1
Q ss_pred ccC-CH-----HHHHHHHHHcCC-----cEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 80 RAV-TE-----EDGHSLAEKEGL-----SFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 80 ~~~-~~-----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
-.+ .. ....+++ ..|+ .++.+|. ..+.|-|.|..+++.+....+
T Consensus 152 ~kietqrdI~qr~~d~l~-d~gle~v~vsf~LTSI-yDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELA-DAGLEKVQVSFYLTSI-YDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred hhhhhHHHHHHHhhHHHH-hhhhccceEEEEEeee-cchHHHHHHHHHHHHHhhhch
Confidence 111 11 1112222 2232 3444444 557899999988887776544
No 328
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.49 E-value=0.0014 Score=46.21 Aligned_cols=86 Identities=27% Similarity=0.252 Sum_probs=58.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
..+.+.++|+++.... .....+..+|.+++++..+. .++..+..++..+... +.|+.+|+||.|... ....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 5678999999976432 23355788999999998863 3555566666555433 467889999998632 1244
Q ss_pred HHHHHHHHcCCcEEE
Q 031238 86 DGHSLAEKEGLSFLE 100 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (163)
+.+++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 566677777876653
No 329
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.46 E-value=0.00039 Score=48.35 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=43.5
Q ss_pred EEEEEeCCChhh----HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 9 KAQIWDTAGQER----YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 9 ~l~l~Dt~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.+.|+||||... ...++..++..+|++|+|.++++..+-.+...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478999999743 2356778889999999999999864444444444444333 34488888884
No 330
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.41 E-value=0.0022 Score=51.26 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=64.0
Q ss_pred cCEEEEEEEEeCCChhhHhhh-----------------------------hhhhhc-CCcEEEEEE-ECC--C--hhHHH
Q 031238 4 EGKTVKAQIWDTAGQERYRAI-----------------------------TSAYYR-GAVGALLVY-DIT--K--RQTFD 48 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~--~--~~s~~ 48 (163)
++-...+.|.||+|.+.-..+ .+..+. .+++.|+|. |.+ + ++.+.
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 445567899999986431110 233455 899999998 664 1 12232
Q ss_pred HH-HHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC--CCCCHHHHHHHH
Q 031238 49 NV-LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL--EATNVEKAFQTI 116 (163)
Q Consensus 49 ~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l 116 (163)
+. ..++.+++.. ++|+++|.|+.|... ....+....+..+++.+++.+|+. +...|..+|+.+
T Consensus 167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 167 EAEERVIEELKEL---NKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHHHHHHHHHhc---CCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 32 4666666554 689999999999421 113344455666667777776663 333444444443
No 331
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00028 Score=53.88 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=65.9
Q ss_pred EEEEEeCCChhhHhhhhhhhhcC---CcEEEEEEECCC----hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 9 KAQIWDTAGQERYRAITSAYYRG---AVGALLVYDITK----RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~---~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
++.|.|.||++-.... .+.+ .|+.++++..+. ++.-+.+.- .++. .-+.++++-||.||....+
T Consensus 126 HVSfVDCPGHDiLMaT---MLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM----~LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMAT---MLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM----KLKHIIILQNKIDLIKESQ 196 (466)
T ss_pred EEEeccCCchHHHHHH---HhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh----hhceEEEEechhhhhhHHH
Confidence 5689999999865432 2333 477788876653 344333321 1111 1368999999999965332
Q ss_pred C--CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 V--TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
. ..++++.|.... +.+++++||.-..||+.+.+.++..+
T Consensus 197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 2 134455555443 46899999999999998877766554
No 332
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.29 E-value=0.00065 Score=48.61 Aligned_cols=101 Identities=15% Similarity=0.069 Sum_probs=65.8
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.|++++|.-- ..-. +.-..+.-|+|+|++.++... ++..+ --.-=++|+||.||...-..+.+.
T Consensus 97 ~Dll~iEs~GNL~--~~~s-p~L~d~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlev 164 (202)
T COG0378 97 LDLLFIESVGNLV--CPFS-PDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEV 164 (202)
T ss_pred CCEEEEecCccee--cccC-cchhhceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHH
Confidence 5667778777211 1111 111234789999998764421 11011 001337899999997655566677
Q ss_pred HHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 87 GHSLAEKEG--LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 87 ~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+.+++.+ .+++++|+++|+|++++++++....
T Consensus 165 m~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 165 MARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 777777664 6899999999999999998887653
No 333
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.29 E-value=0.00035 Score=51.41 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=84.3
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGN 72 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~n 72 (163)
+-.++.+.+.|.+|++..+.-|-+.+.++-.++|++.++ +...+++.+-++.-+..+.= .+.++|++.|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 344566789999999988888888888887777776553 33345555566666665532 4689999999
Q ss_pred CCCCccccc----------------CCHHHHHHHHHH----cC------CcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 73 KSDLNHLRA----------------VTEEDGHSLAEK----EG------LSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 73 K~Dl~~~~~----------------~~~~~~~~~~~~----~~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
|.|+.+.+. .......+++-+ .+ +...+++|.+.+||.-+|..+.+.+++...+
T Consensus 275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 354 (359)
T ss_pred hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence 999843211 111222233222 12 2356889999999999999999999887655
Q ss_pred h
Q 031238 127 K 127 (163)
Q Consensus 127 ~ 127 (163)
.
T Consensus 355 E 355 (359)
T KOG0085|consen 355 E 355 (359)
T ss_pred h
Confidence 3
No 334
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.26 E-value=0.0022 Score=49.42 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=41.3
Q ss_pred EEEEEEEeCCChhhHhhh-------hhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAI-------TSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~-------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D 75 (163)
...+.+|||||..+.... ...++ .+.|+++||..++.....+.-...+..+....+ --.++||+.|+.|
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 357899999997653221 11112 268999999766532111111233444444333 1257899999999
Q ss_pred Ccc
Q 031238 76 LNH 78 (163)
Q Consensus 76 l~~ 78 (163)
...
T Consensus 165 ~~~ 167 (313)
T TIGR00991 165 FSP 167 (313)
T ss_pred cCC
Confidence 653
No 335
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0025 Score=52.75 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=50.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.+.++||||+.+|.-..+..++--|+.|+++|+..+..-...--| .++.++ ++|-+.++||.|.
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry---~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY---NVPRICFINKMDR 168 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc---CCCeEEEEehhhh
Confidence 57889999999999988888889999999999998765433222233 334444 6899999999995
No 336
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.11 E-value=0.0012 Score=50.30 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=38.2
Q ss_pred CeEEEEeeCCCCcccccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKE--GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
..-++|+||+|+........+......+.. ..+++.+||++|+|+++++++|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999642221223333333333 4689999999999999999998764
No 337
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00013 Score=57.81 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=57.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.++-+.+++.++||||+.+|+...+..++--|+++.|||.+-+..-..+--|.+. .+.++|-..+.||+|..
T Consensus 96 ~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 96 NFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKL 167 (753)
T ss_pred ecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhh
Confidence 4567788999999999999998888999999999999999876555555556443 22468889999999963
No 338
>PTZ00258 GTP-binding protein; Provisional
Probab=96.96 E-value=0.0088 Score=47.62 Aligned_cols=44 Identities=14% Similarity=-0.016 Sum_probs=28.7
Q ss_pred CCeEEEEeeCC--CCcccccCCHHHHHHHHHHc-CCcEEEeccCCCC
Q 031238 64 NIVIMMAGNKS--DLNHLRAVTEEDGHSLAEKE-GLSFLETSALEAT 107 (163)
Q Consensus 64 ~~piivv~nK~--Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 107 (163)
.+|+++|+|+. |+.....-..+.+..++... +.+++.+||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 48999999999 76211111234556666666 4789999986543
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.88 E-value=0.0024 Score=45.11 Aligned_cols=44 Identities=20% Similarity=0.053 Sum_probs=27.3
Q ss_pred cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 33 VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 33 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
|++++|+|+.++.+-.. ..+...+. ....++|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987632211 11222211 1123589999999999953
No 340
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.83 E-value=0.0032 Score=51.14 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=52.0
Q ss_pred hHhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH---HHHHHc
Q 031238 20 RYRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH---SLAEKE 94 (163)
Q Consensus 20 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~~ 94 (163)
-++.+|+- +..+|+||.++|+.++--|. ++..++.++ .+ .+-.++++||.||.. .++.. .+....
T Consensus 164 ~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~---d~-~K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~ 233 (562)
T KOG1424|consen 164 IWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEV---DP-SKANVLLVNKADLLP-----PEQRVAWAEYFRQN 233 (562)
T ss_pred HHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhcc---cc-ccceEEEEehhhcCC-----HHHHHHHHHHHHhc
Confidence 35566654 78899999999999985542 333444333 22 366789999999963 33433 345566
Q ss_pred CCcEEEeccCC
Q 031238 95 GLSFLETSALE 105 (163)
Q Consensus 95 ~~~~~~~Sa~~ 105 (163)
++++++-||..
T Consensus 234 ni~~vf~SA~~ 244 (562)
T KOG1424|consen 234 NIPVVFFSALA 244 (562)
T ss_pred CceEEEEeccc
Confidence 78999999976
No 341
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.011 Score=46.73 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=60.3
Q ss_pred EEEEEeCCChhhHhhhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC----
Q 031238 9 KAQIWDTAGQERYRAITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV---- 82 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---- 82 (163)
.+.|+|.+|+.+|....-.-+. ..|...+|++++..-.+. .+..+-.+... ++|++++++|.|+.+...+
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHHHHH
Confidence 5689999999998764433332 257788888887653321 12223333322 6999999999998542111
Q ss_pred --------------------CHHHH----HHHHHHcCCcEEEeccCCCCCHHHH
Q 031238 83 --------------------TEEDG----HSLAEKEGLSFLETSALEATNVEKA 112 (163)
Q Consensus 83 --------------------~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~ 112 (163)
+..+. ++.+...=.++|.+|+.+|+|++-+
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 11111 1211111137899999999997654
No 342
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0083 Score=46.69 Aligned_cols=89 Identities=22% Similarity=0.135 Sum_probs=54.8
Q ss_pred EEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC---CHHHHH
Q 031238 12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV---TEEDGH 88 (163)
Q Consensus 12 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~ 88 (163)
=.|.||+-+|-+..-.=-..-|+.|+|+.++|.. +.+.+..+...++.. =..++|+.||.|+.++.+. -+-+++
T Consensus 121 H~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~R 197 (449)
T KOG0460|consen 121 HTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIR 197 (449)
T ss_pred cCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHH
Confidence 4689999888443222245679999999999852 223333333233332 2468899999999743332 123456
Q ss_pred HHHHHcCC-----cEEEecc
Q 031238 89 SLAEKEGL-----SFLETSA 103 (163)
Q Consensus 89 ~~~~~~~~-----~~~~~Sa 103 (163)
++...+|+ +++.-||
T Consensus 198 ElLse~gf~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 198 ELLSEFGFDGDNTPVIRGSA 217 (449)
T ss_pred HHHHHcCCCCCCCCeeecch
Confidence 67777765 5776655
No 343
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0051 Score=52.17 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=48.9
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HHHHHH-HHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FDNVLR-WLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.+.+.|+|+||+.+|.+......+=+|+.++++|+..+.. ..-+++ |.+ +..+++|+||+|.
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidr 136 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDR 136 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhh
Confidence 466788999999999999998888999999999999976533 222222 222 3556789999993
No 344
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.63 E-value=0.0022 Score=48.02 Aligned_cols=105 Identities=20% Similarity=0.126 Sum_probs=61.6
Q ss_pred EEEEEEeCCC--hhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 8 VKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 8 ~~l~l~Dt~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
+.+.|.+|.| |.+. ....-+|.+++|.-+.-.++++.++.-+-++ .=++|+||.|...... ...
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~-~~~ 187 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADR-TVR 187 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH-HHH
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHH-HHH
Confidence 3466777755 4432 2355689999999887665555443322222 2278999999643222 122
Q ss_pred HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 86 DGHSLAEK-------EGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 86 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
+.+..... +..+++.+||.++.|++++++.+.+..-.....
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 22222211 234799999999999999999998765555444
No 345
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.48 E-value=0.026 Score=41.06 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=57.5
Q ss_pred EEEEEEeCCChhhH--------hhh---hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC--CCeEEEEeeCC
Q 031238 8 VKAQIWDTAGQERY--------RAI---TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS--NIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~--------~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~ 74 (163)
..+.++||||..+. ..+ ......+.+++++|++++.. +-.+ ...+..+....+. -..++||.|..
T Consensus 49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 35789999995321 111 11234578999999999832 2111 2223333333331 24688899988
Q ss_pred CCcccccCC-------HHHHHHHHHHcCCcEEEeccC------CCCCHHHHHHHHHHHHH
Q 031238 75 DLNHLRAVT-------EEDGHSLAEKEGLSFLETSAL------EATNVEKAFQTILTEIY 121 (163)
Q Consensus 75 Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~------~~~~i~~~~~~l~~~~~ 121 (163)
|-.....+. ....+.+.+..+-.|+..+.+ ....+.++|+.+-+.+.
T Consensus 127 d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 127 DELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp GGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 854433311 122445666667778877766 22234555554444443
No 346
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.43 E-value=0.014 Score=43.77 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=40.1
Q ss_pred EEEEEEeCCChhhHhh----------hhhhhhc--CCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCC--CCeEEEEee
Q 031238 8 VKAQIWDTAGQERYRA----------ITSAYYR--GAVGALLVYDITKRQ-TFDNVLRWLRELRDHADS--NIVIMMAGN 72 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~----------~~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piivv~n 72 (163)
..+.||||||...... ....+++ ..|++++|..++... ...+ ...+..+....+. -.++++|.|
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T 157 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT 157 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence 4689999999754310 1122333 578888887666431 2221 2334444433331 257999999
Q ss_pred CCCCc
Q 031238 73 KSDLN 77 (163)
Q Consensus 73 K~Dl~ 77 (163)
|.|..
T Consensus 158 ~~d~~ 162 (249)
T cd01853 158 HAASS 162 (249)
T ss_pred CCccC
Confidence 99974
No 347
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.39 E-value=0.015 Score=45.22 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCCh-hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH
Q 031238 15 TAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK 93 (163)
Q Consensus 15 t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 93 (163)
.+|+ .++.......+..+|+++.|+|+-++.+... ..+.+... ++|.++|+||.||..... ..+-.+.+.+.
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~ 89 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKKE 89 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence 3555 3455667778999999999999998765321 11122222 456699999999964222 22223333344
Q ss_pred cCCcEEEeccCCCCCHHHHHHHH
Q 031238 94 EGLSFLETSALEATNVEKAFQTI 116 (163)
Q Consensus 94 ~~~~~~~~Sa~~~~~i~~~~~~l 116 (163)
.+...+.+++.++.+...+...+
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~~~~ 112 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIRKAL 112 (322)
T ss_pred CCCccEEEEeecccCccchHHHH
Confidence 46678888998888877666433
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.35 E-value=0.027 Score=43.08 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=65.8
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
-.+.+.|.+|.|-=... -....-+|.+++|.-..-.+.++.++.-+-++ -=|+|+||.|......-..+
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAARE 210 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHH
Confidence 34567788887632111 12455689999998666555665554433332 22789999996432111111
Q ss_pred H--HHHHHH------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 86 D--GHSLAE------KEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 86 ~--~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
. ...+.. .+.-+++.+||.+++|++++++.+.+...-...
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 1 111111 122479999999999999999999987655543
No 349
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.026 Score=42.23 Aligned_cols=90 Identities=18% Similarity=0.351 Sum_probs=60.4
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcc---------------------------cc
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNH---------------------------LR 80 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~---------------------------~~ 80 (163)
.....++++|||++....+..+..|+....-. .+. ++.+|||.|... +.
T Consensus 76 a~pl~a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~df 152 (418)
T KOG4273|consen 76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDF 152 (418)
T ss_pred ccceeeEEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhc
Confidence 34567899999999888888899998754322 233 366999999520 01
Q ss_pred cC-----------------CHHHHHHHHHHcCCcEEEeccC------------CCCCHHHHHHHHHHHHH
Q 031238 81 AV-----------------TEEDGHSLAEKEGLSFLETSAL------------EATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~-----------------~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~~~~~~l~~~~~ 121 (163)
.+ ..-...+++.++++.+++.++. +..|++.+|.++-..+.
T Consensus 153 gisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 153 GISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred cccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 00 0112467888899999999883 23468888887765544
No 350
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.19 E-value=0.04 Score=41.83 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=55.5
Q ss_pred EEEEEEEeCCChhhHhhhh----hh---hh-----cCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 7 TVKAQIWDTAGQERYRAIT----SA---YY-----RGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~----~~---~~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+.+.|+||+|....+... .. .. ..+|.+++|+|++.. +.+... ..+.+..+ +--+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~~---~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAVG---LTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhCC---CCEEEEEc
Confidence 4678999999975432211 11 11 238999999999854 233332 22222211 34678999
Q ss_pred CCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238 74 SDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 74 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 114 (163)
.|-... .-.+.......++++..++ +|++++++-.
T Consensus 227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 996321 1223344455678888877 6888776643
No 351
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.99 E-value=0.078 Score=39.30 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=39.9
Q ss_pred EEEEEEeC-CChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCC-CeEEEEeeCCCC
Q 031238 8 VKAQIWDT-AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN-IVIMMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piivv~nK~Dl 76 (163)
..+.+.|| +|.+.+. +...+++|.+|+|.|.+-. ++..... +.++... -+ +++.+|+||.|-
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~e--lg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAEE--LGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHHH--hCCceEEEEEeeccc
Confidence 45778887 5665543 5668899999999998642 3332222 1222111 13 799999999983
No 352
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.96 E-value=0.016 Score=44.91 Aligned_cols=104 Identities=20% Similarity=0.097 Sum_probs=62.8
Q ss_pred EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe----EEEEeeCCC
Q 031238 9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV----IMMAGNKSD 75 (163)
Q Consensus 9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----iivv~nK~D 75 (163)
.+-+.||-|.-. |.... .....+|.++.|.|+++|+.-.....-+.-+....-.+.| ++=|-||.|
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence 356789998632 33333 3367899999999999986533322222222211111122 455778888
Q ss_pred CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
........ +..+ .+.+||.+|+|.+++.+.+-..+.+.
T Consensus 306 ~e~~~~e~--------E~n~--~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 306 YEEDEVEE--------EKNL--DVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred cccccCcc--------ccCC--ccccccccCccHHHHHHHHHHHhhhh
Confidence 75322211 1112 68899999999999988877766554
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.059 Score=45.46 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=55.3
Q ss_pred EEEEEeCCChh---hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 9 KAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 9 ~l~l~Dt~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.|.||.+ ........+..++|++|+|..+.+.....+ ++++.. ....+..|+++.||+|.....+.-.+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~---vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHK---VSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHH---hhccCCcEEEEechhhhhcccHHHHH
Confidence 45788999975 345556677889999999998877544332 233333 33334567888899997543332223
Q ss_pred HHHHHHHHcC--------CcEEEeccCC
Q 031238 86 DGHSLAEKEG--------LSFLETSALE 105 (163)
Q Consensus 86 ~~~~~~~~~~--------~~~~~~Sa~~ 105 (163)
.+..-....+ -.++++||+.
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3322222221 2478888644
No 354
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.80 E-value=0.21 Score=35.26 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=64.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 031238 31 GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVE 110 (163)
Q Consensus 31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 110 (163)
..|.|+|++|.+...|+..+..-+..+.....-++- .++++.....+...+..+.+.+++..+.++++.+.-...++..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKV-Cfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKV-CFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccce-EEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 479999999999999998887666665433333333 4455555555556778899999999999999998887776666
Q ss_pred HHHHHHHHHH
Q 031238 111 KAFQTILTEI 120 (163)
Q Consensus 111 ~~~~~l~~~~ 120 (163)
.+-+.|++.+
T Consensus 143 ~lAqRLL~~l 152 (176)
T PF11111_consen 143 SLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 355
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.76 E-value=0.18 Score=37.95 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=37.4
Q ss_pred CeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
++.+.|.||+|. ++.++...++++.+ .+.+|+....|++.+++.+.+.+.
T Consensus 239 ~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 556677777764 56778888887655 466788888899999999988653
No 356
>PHA02518 ParA-like protein; Provisional
Probab=95.74 E-value=0.094 Score=37.66 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=41.0
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIV-IMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D 75 (163)
.+.+.|+|++|.. .......+..+|.+|++...+.. .....+..++..+..... +.| +.++.|+.+
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~n~~~ 144 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTD-GLPKFAFIISRAI 144 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCC-CCceEEEEEeccC
Confidence 4678999999874 34456778899999999987632 223334444444333222 344 445667764
No 357
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.69 E-value=0.03 Score=44.33 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=50.3
Q ss_pred hhhHhhhhhhhhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHH---HH
Q 031238 18 QERYRAITSAYYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSL---AE 92 (163)
Q Consensus 18 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~ 92 (163)
...|.......+..+|+||.|.|+.||.+- .++..|+.. . ..++..|+|.||.||.. .+....| .+
T Consensus 133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~-~gnKkLILVLNK~DLVP-----rEv~e~Wl~YLr 203 (435)
T KOG2484|consen 133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---A-HGNKKLILVLNKIDLVP-----REVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh---c-cCCceEEEEeehhccCC-----HHHHHHHHHHHH
Confidence 344555566678889999999999998542 233344322 1 23488999999999953 3444444 34
Q ss_pred HcCCcEEEeccCCCCC
Q 031238 93 KEGLSFLETSALEATN 108 (163)
Q Consensus 93 ~~~~~~~~~Sa~~~~~ 108 (163)
..+..+.+..+....+
T Consensus 204 ~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 204 REGPTVAFKASTQMQN 219 (435)
T ss_pred hhCCcceeeccccccc
Confidence 4444555554444433
No 358
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.027 Score=46.15 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=48.9
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
++..+-+.++|.||+.+|.+.....++=.|+.++|+|.-++.....---+.+.+-+. -+| +++.||.|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhH
Confidence 455678899999999999999889999999999999998764432211122222111 244 578999994
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=95.50 E-value=0.11 Score=40.72 Aligned_cols=101 Identities=14% Similarity=-0.021 Sum_probs=56.7
Q ss_pred EEEEEEeCCChhhHh----hhhhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 8 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+.+.|+||+|..... ...... ..+.|.+++|.|++.+....+....+.. .. ..--+|.||.|....-.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~---~~---~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE---AV---GIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh---cC---CCCEEEEeeecCCCCcc
Confidence 468999999975321 111222 2357899999999865432222222221 11 12357899999632111
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+...+...+.++..++ +|++++++...=.+.+
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence 22333444578888877 6899887754333333
No 360
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.42 E-value=0.087 Score=35.66 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=43.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
+.+.++|+++... ......+..+|.++++.+.+ ..++......+..+..... ..++.+|.|+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLR-VLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCC
Confidence 4678999987543 23346788999999999875 3345444444444443332 4577889999974
No 361
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=95.39 E-value=0.083 Score=39.96 Aligned_cols=95 Identities=14% Similarity=0.252 Sum_probs=52.2
Q ss_pred cCCcEEEEEEECCC-----hh--HHH----HHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-----CCHHHHHHHHHH
Q 031238 30 RGAVGALLVYDITK-----RQ--TFD----NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-----VTEEDGHSLAEK 93 (163)
Q Consensus 30 ~~~d~ii~v~d~~~-----~~--s~~----~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~ 93 (163)
+..+|||+++|+.+ .. .+. .++.-+.++....+..+||++|+||+|+...-. .+.++ ...-
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~---r~q~ 100 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEE---REQV 100 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHH---HhCC
Confidence 35699999999853 11 122 233445555555556899999999999864211 11111 1122
Q ss_pred cCCcEEEeccCCCCC---HHHHHHHHHHHHHHHHhHh
Q 031238 94 EGLSFLETSALEATN---VEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 94 ~~~~~~~~Sa~~~~~---i~~~~~~l~~~~~~~~~~~ 127 (163)
+|+.+-.-....... +++.|+.+...+......+
T Consensus 101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 137 (266)
T PF14331_consen 101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLER 137 (266)
T ss_pred cccccCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 343221112223333 6777777777766665443
No 362
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.31 E-value=0.15 Score=46.30 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=45.0
Q ss_pred EEEEeCCChh--------hHhhhhhhhh---------cCCcEEEEEEECCCh-----hHH----HHHHHHHHHHHhhcCC
Q 031238 10 AQIWDTAGQE--------RYRAITSAYY---------RGAVGALLVYDITKR-----QTF----DNVLRWLRELRDHADS 63 (163)
Q Consensus 10 l~l~Dt~G~~--------~~~~~~~~~~---------~~~d~ii~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~ 63 (163)
-.++||+|.- .....|..++ +..+|||+++|+.+- +.. ..++..+.++....+.
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999932 1122233332 458999999998652 111 2345566666666666
Q ss_pred CCeEEEEeeCCCCc
Q 031238 64 NIVIMMAGNKSDLN 77 (163)
Q Consensus 64 ~~piivv~nK~Dl~ 77 (163)
.+||+|++||+|+.
T Consensus 243 ~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 243 RFPVYLVLTKADLL 256 (1169)
T ss_pred CCCEEEEEecchhh
Confidence 89999999999985
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.29 E-value=0.14 Score=39.84 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=55.7
Q ss_pred EEEEEEEEeCCChhhH--------hhhhhh---h-hcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEee
Q 031238 6 KTVKAQIWDTAGQERY--------RAITSA---Y-YRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGN 72 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~--------~~~~~~---~-~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~n 72 (163)
..+.+.|+||+|.... ..+.+. . -...+..++|.|++... .+..+ ..+.... .+.-+|.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEEEE
Confidence 3467899999997432 111111 0 12467889999998542 33332 2222111 23467899
Q ss_pred CCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238 73 KSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 73 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 114 (163)
|.|-... .-.+.......++++..++ +|++++++-.
T Consensus 268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 9995321 1123445556688888888 6888877643
No 364
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.19 E-value=0.68 Score=38.73 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=60.4
Q ss_pred EEEEEeCCCh-------------hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHH-HhhcCCCCeEEEEeeCC
Q 031238 9 KAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSNIVIMMAGNKS 74 (163)
Q Consensus 9 ~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~ 74 (163)
...+.|.||- +....+...+..+.+++|+|+--- |.+.-+.....+ ....+.+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 4578899884 334556778899999999998211 222222112222 22234578889999999
Q ss_pred CCcccccCCHHHHHHHHHHcC-----CcEEEeccCCC
Q 031238 75 DLNHLRAVTEEDGHSLAEKEG-----LSFLETSALEA 106 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~ 106 (163)
||.+....+...++.+....- +.||.+-.-.|
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 997766667777877766542 34777655444
No 365
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.037 Score=43.72 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=42.8
Q ss_pred EEEEEeCCChhh-----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++.+.||||.-. |....+-+..++|.||++||+-.-+--++....+..++ +..=.+=||.||.|..
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHEDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcceeEEEecccccc
Confidence 568999999422 34455567889999999999864222222222233332 2223456789999986
Q ss_pred cccc
Q 031238 78 HLRA 81 (163)
Q Consensus 78 ~~~~ 81 (163)
+..+
T Consensus 225 dtqq 228 (532)
T KOG1954|consen 225 DTQQ 228 (532)
T ss_pred CHHH
Confidence 5433
No 366
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.03 E-value=0.57 Score=37.13 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=27.8
Q ss_pred CeEEEEeeCCCCcc-cccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238 65 IVIMMAGNKSDLNH-LRAVTEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 65 ~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
+|+++++|+.|..- ......+.+.+++...+.+++.+||.-
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 241 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI 241 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 99999999988421 111123555666666788899999844
No 367
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.83 E-value=0.24 Score=39.30 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=48.6
Q ss_pred EEEEEeCCChhhH-----hhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCC--c---
Q 031238 9 KAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDL--N--- 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl--~--- 77 (163)
.+.+||.||--.- ..+...-+...|.+|++.+-. |.+.. .+...+.+. ++|+++|-+|.|. .
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence 4789999995221 112233466789888876532 33333 233333333 6899999999995 1
Q ss_pred --ccccCCHH----HHHHHHHH----cCC---cEEEeccCCCC--CHHHHHHHHHHHH
Q 031238 78 --HLRAVTEE----DGHSLAEK----EGL---SFLETSALEAT--NVEKAFQTILTEI 120 (163)
Q Consensus 78 --~~~~~~~~----~~~~~~~~----~~~---~~~~~Sa~~~~--~i~~~~~~l~~~~ 120 (163)
..+....+ ++++.+.. .|. ++|.+|..+-. +...+.+.|.+.+
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 11222222 22333222 233 58888886644 3555655555433
No 368
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.52 E-value=0.67 Score=32.14 Aligned_cols=84 Identities=15% Similarity=0.023 Sum_probs=50.3
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH 88 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 88 (163)
.+.++|+++..... ....+..+|.+|++.+.+. .++..+..++..+... + ...+.+|.|+.+... ....+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~-~~~~~iv~N~~~~~~--~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-G-IKVVGVIVNRVRPDM--VEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-C-CceEEEEEeCCcccc--cchhhHHH
Confidence 57899998764332 3345788999999998753 3455555555554432 1 235678999997532 12222234
Q ss_pred HHHHHcCCcEE
Q 031238 89 SLAEKEGLSFL 99 (163)
Q Consensus 89 ~~~~~~~~~~~ 99 (163)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555566554
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.19 E-value=0.28 Score=39.66 Aligned_cols=64 Identities=17% Similarity=0.034 Sum_probs=37.9
Q ss_pred EEEEEEEeCCChhhHhh----hhhh--hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRA----ITSA--YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.+.|+||+|...... .... .....+-+++|+|++.+....+....|. +. -.+--+|.||.|-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~---~~---~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK---DS---VDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH---hc---cCCcEEEEECccC
Confidence 46789999999753321 1111 1235788999999986543333222222 11 1245678999996
No 370
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.89 E-value=0.49 Score=30.41 Aligned_cols=62 Identities=21% Similarity=0.082 Sum_probs=40.0
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC-CCeEEEEeeC
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNK 73 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK 73 (163)
.+.+.|+++.... .....+..+|.++++.+.+ ..++..+..+...+...... ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4689999886543 2345678899999998764 44555666666655544332 3456677775
No 371
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.79 E-value=0.85 Score=33.53 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=41.9
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.++|+++.. .......+..+|.+|++...+ ..++..+...+..+........++-+|.|+.|.
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 68999999853 334556778999999999875 344545542233333221224557789999985
No 372
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.75 E-value=0.33 Score=39.35 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=47.5
Q ss_pred EEEEEEEeCCChhhHhh----hhhh--hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 7 TVKAQIWDTAGQERYRA----ITSA--YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.+.|.||+|....+. .... ..-..+.+++|+|++..... ..+...+....+ ..=+|.||.|-..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~---~~~a~~f~~~v~---i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA---VNTAKTFNERLG---LTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH---HHHHHHHHhhCC---CCEEEEeCccCcc--
Confidence 45789999999632211 0111 12357889999999865332 222233322211 2246789999421
Q ss_pred cCCHHHHHHHHHHcCCcEEEecc
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
..-.+.......++|+.++..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 111245566666777666654
No 373
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.65 E-value=0.33 Score=38.85 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=52.6
Q ss_pred hcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCC
Q 031238 29 YRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA 106 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 106 (163)
+..+|++|-|+|+.||.- -..+. ..+++..+ -+.+|.|+||+||.... +...=..-+.+.+.---|..|....
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve---~ylkke~p-hKHli~vLNKvDLVPtw-vt~~Wv~~lSkeyPTiAfHAsi~ns 285 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRCKHVE---EYLKKEKP-HKHLIYVLNKVDLVPTW-VTAKWVRHLSKEYPTIAFHASINNS 285 (572)
T ss_pred hcccceeEEeeeccCCcccccHHHH---HHHhhcCC-cceeEEEeeccccccHH-HHHHHHHHHhhhCcceeeehhhcCc
Confidence 446899999999999742 12222 22333333 47899999999995321 1111222333333322244455555
Q ss_pred CCHHHHHHHHHHHHHHHHhHhH
Q 031238 107 TNVEKAFQTILTEIYHIISKKA 128 (163)
Q Consensus 107 ~~i~~~~~~l~~~~~~~~~~~~ 128 (163)
.|- -.+-.|++++-..+..+.
T Consensus 286 fGK-galI~llRQf~kLh~dkk 306 (572)
T KOG2423|consen 286 FGK-GALIQLLRQFAKLHSDKK 306 (572)
T ss_pred cch-hHHHHHHHHHHhhccCcc
Confidence 563 444556677777765543
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.60 E-value=0.21 Score=34.61 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=36.8
Q ss_pred EEEEEEEeCCChhhHhhhhhh--------hhcCCcEEEEEEECCChhHHH-HHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDITKRQTFD-NVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.....|.|++|-..-...... ..-..|++++++|+....... ....+..++. .. . ++|.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-~a----d-~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-FA----D-RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-HC----C-EEEEecccC
Confidence 457789999997543322222 233579999999986533211 1122222222 21 2 568999996
No 375
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=93.60 E-value=1.8 Score=30.52 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=59.9
Q ss_pred hcCCcEEEEEEECCC----h---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEe
Q 031238 29 YRGAVGALLVYDITK----R---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET 101 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~----~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
++...+=.+++|.++ + +-..++..|+.++++..+ ...++||-|-.-..+ +...+.++.+.+..+++++..
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH 112 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC-CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence 666777778888766 1 223567889999887654 225777877653322 345677888889999999999
Q ss_pred ccCCCCCHHHHHHHH
Q 031238 102 SALEATNVEKAFQTI 116 (163)
Q Consensus 102 Sa~~~~~i~~~~~~l 116 (163)
+++...+..++...+
T Consensus 113 ~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 113 RAKKPGCFREILKYF 127 (168)
T ss_pred CCCCCccHHHHHHHH
Confidence 999997777665544
No 376
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.19 E-value=1.1 Score=34.07 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=50.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
..+.+.|+|..-. -..-..+.++|.+|+|--.|- -.+.+++..++-.... ++|..+|.||.++. ..++
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g------~s~i 231 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLG------DSEI 231 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCC------chHH
Confidence 3567788764321 112346889999999976653 2344444433333222 69999999999753 2267
Q ss_pred HHHHHHcCCcEE
Q 031238 88 HSLAEKEGLSFL 99 (163)
Q Consensus 88 ~~~~~~~~~~~~ 99 (163)
+++++..+++++
T Consensus 232 e~~~~e~gi~il 243 (284)
T COG1149 232 EEYCEEEGIPIL 243 (284)
T ss_pred HHHHHHcCCCee
Confidence 788888887654
No 377
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=92.88 E-value=0.52 Score=36.00 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcEEEe
Q 031238 31 GAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSFLET 101 (163)
Q Consensus 31 ~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~ 101 (163)
+.|+++|+++++.. -.-.++ ..+..+ .. .+++|-|+.|.|.....++ ....+....+..++.++..
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di-~~mk~L---s~-~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDI-EFMKRL---SK-RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHH-HHHHHH---TT-TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred CcceEEEEEcCCCccchHHHH-HHHHHh---cc-cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 46999999998752 221122 233333 33 4788999999997532222 1233444455667765553
No 378
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=92.68 E-value=0.65 Score=39.74 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=43.9
Q ss_pred EEEEEEeCCChhhHh-------hh---hhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC--CCeEEEEeeC
Q 031238 8 VKAQIWDTAGQERYR-------AI---TSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADS--NIVIMMAGNK 73 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~-------~~---~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK 73 (163)
..+.|+||||..... .+ ...+++ +.|++|+|..++......+-..++..+....+. =..+|||.|+
T Consensus 166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh 245 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH 245 (763)
T ss_pred ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence 468999999976421 11 122333 589999999876432222223555666555552 2568999999
Q ss_pred CCCcc
Q 031238 74 SDLNH 78 (163)
Q Consensus 74 ~Dl~~ 78 (163)
.|...
T Consensus 246 gD~lp 250 (763)
T TIGR00993 246 AASAP 250 (763)
T ss_pred CccCC
Confidence 99753
No 379
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=92.38 E-value=0.95 Score=36.16 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=51.4
Q ss_pred EEEEEeCCChhhHhhhhhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 9 KAQIWDTAGQERYRAITSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
-+.|+|.+|+++|-...-.= =.-.|.-.+++-++-. -+-..+..+-..+. -.+|+++|++|+|+-.. .+..+.
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPA-NiLqEt 294 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPA-NILQET 294 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcH-HHHHHH
Confidence 35799999999885432110 1123555555555432 01111111111111 15899999999998432 222222
Q ss_pred HHH---HHHH--------------------------cCCcEEEeccCCCCCHHHH
Q 031238 87 GHS---LAEK--------------------------EGLSFLETSALEATNVEKA 112 (163)
Q Consensus 87 ~~~---~~~~--------------------------~~~~~~~~Sa~~~~~i~~~ 112 (163)
++. +.+. .-+++|.+|-.+|.|+.-+
T Consensus 295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 222 2221 2246899999999997643
No 380
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=92.38 E-value=0.14 Score=40.86 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=61.4
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHH-HhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVLRWLREL-RDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i-~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
-++.+.|++|+..|-...-.=..+||.-++|.++...+ -|+.--+-.... +.....-...|+++||.|-+. -.++
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt-vnWs 235 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT-VNWS 235 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc-cCcc
Confidence 36789999999877443223345688889998874321 132211111111 111122367899999999532 1122
Q ss_pred -------HHHHHHHHHHcCC------cEEEeccCCCCCHHHHHH
Q 031238 84 -------EEDGHSLAEKEGL------SFLETSALEATNVEKAFQ 114 (163)
Q Consensus 84 -------~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~ 114 (163)
.+....+.+..|+ .++++|..+|.++++...
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2233444454443 589999999999887543
No 381
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.23 E-value=2 Score=29.82 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=52.7
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc----
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL---- 79 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~---- 79 (163)
..+.+.+.|+++...-.. ...+ ..+|.+|++...+ +.++..+..++..+.+... ..+-+|.|+.+....
T Consensus 66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~~--~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVNI--PILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcCC--CeEEEEEcCCcccCCCCCC
Confidence 457789999998642211 1222 5789999998764 4566677777766665522 234578999874211
Q ss_pred -ccC-CHHHHHHHHHHcCCcEE
Q 031238 80 -RAV-TEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 80 -~~~-~~~~~~~~~~~~~~~~~ 99 (163)
... .....+.+++..+.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccccCCccHHHHHHHcCCCEE
Confidence 111 12345666666665543
No 382
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=92.21 E-value=1.4 Score=34.88 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=53.3
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+.++|.| + .+......++..+|-+++|++.+ -.++...++++..+++......+..+|+|+.+..
T Consensus 217 ~~~~vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 217 SFDFVVVDLP-N-IWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred cCCeEEEcCC-C-ccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence 4567899998 3 34555677899999999999874 3467777888888888877677888999999853
No 383
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.94 E-value=1.1 Score=36.54 Aligned_cols=85 Identities=18% Similarity=0.062 Sum_probs=45.0
Q ss_pred EEEEEeCCChhhHhhh----hh--hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 9 KAQIWDTAGQERYRAI----TS--AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.+.++||+|....... .. ..+..+|.+++|+|++..... ......+....+ ..-+|.||.|-.. +
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~a---v~~a~~F~~~l~---i~gvIlTKlD~~a-~-- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQA---KNQAKAFHEAVG---IGGIIITKLDGTA-K-- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHH---HHHHHHHHhcCC---CCEEEEecccCCC-c--
Confidence 6899999997543211 11 113468899999999865321 112222221111 2356889999521 1
Q ss_pred CHHHHHHHHHHcCCcEEEecc
Q 031238 83 TEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa 103 (163)
.=.+.......+.++.+++.
T Consensus 248 -~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEec
Confidence 11223344455666655554
No 384
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.87 E-value=1.4 Score=34.52 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=53.4
Q ss_pred EEEEEEEEeCCChhh--------HhhhhhhhhcCCcE-----EEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238 6 KTVKAQIWDTAGQER--------YRAITSAYYRGAVG-----ALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAG 71 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~-----ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~ 71 (163)
+++.+.|.||+|+.. ...+. ...+..+. ++++.|++-++ .+.+.+ .|.+..... =+|.
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~-rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~l~------GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIV-RVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVGLD------GIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHH-HHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcCCc------eEEE
Confidence 356789999999732 12222 22333333 88888998654 454443 344433221 3688
Q ss_pred eCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238 72 NKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA 112 (163)
Q Consensus 72 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 112 (163)
||.|-...--+ +..++..+++|+.++-. |++++++
T Consensus 292 TKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 292 TKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 99995322222 12355667888777765 6677766
No 385
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=91.77 E-value=0.2 Score=38.11 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred EEEEEeCCCh----------hhHhhhhhhhhcCC---cEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 9 KAQIWDTAGQ----------ERYRAITSAYYRGA---VGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 9 ~l~l~Dt~G~----------~~~~~~~~~~~~~~---d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+.+.|.+|. .++..+...|+..- --+++++|++-+ ........|+.+ .++|+.+|.||
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK 257 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTK 257 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeeh
Confidence 5677899981 33445555555433 234455566543 122233345433 37999999999
Q ss_pred CCCccc------ccCC-HHH-HHHHHHH---cCCcEEEeccCCCCCHHHHHHHHH
Q 031238 74 SDLNHL------RAVT-EED-GHSLAEK---EGLSFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 74 ~Dl~~~------~~~~-~~~-~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
+|...+ ++.. ... .+.+.+. -.++++.+|+.++.|+++++-.+.
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence 996321 1111 111 1112111 134788999999999998865544
No 386
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.73 E-value=2.2 Score=30.86 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=50.0
Q ss_pred EEEEEEEeCCChhhHhhhhhh-hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCC-eEEEEeeCCCCcccccCC
Q 031238 7 TVKAQIWDTAGQERYRAITSA-YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNI-VIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~-piivv~nK~Dl~~~~~~~ 83 (163)
.+.+.++|++|.......... ..+.+|.++++++.+ ..++..+...+..+..... .+. ...++.|+.+.. ..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~ 190 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE 190 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence 478899999765432222111 123799999999774 3444444443333333322 133 345899999852 22
Q ss_pred HHHHHHHHHHcCCcEEE
Q 031238 84 EEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (163)
.+..+++.+.++.+++.
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 34556676766765443
No 387
>PRK10867 signal recognition particle protein; Provisional
Probab=91.45 E-value=1.4 Score=35.88 Aligned_cols=87 Identities=20% Similarity=0.077 Sum_probs=46.1
Q ss_pred EEEEEEEeCCChhhHhh----hhhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 7 TVKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.+.|+||+|....+. ....+ .-..+.+++|.|++......+ ....+....+ ..-+|.||.|-.. +
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~---~a~~F~~~~~---i~giIlTKlD~~~-r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVN---TAKAFNEALG---LTGVILTKLDGDA-R 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHH---HHHHHHhhCC---CCEEEEeCccCcc-c
Confidence 46789999999642211 11111 225678899999876433222 2222222111 2246779999522 1
Q ss_pred cCCHHHHHHHHHHcCCcEEEecc
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
.-.+.......++|+.++..
T Consensus 256 ---gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 11244555666777666554
No 388
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=91.16 E-value=2.4 Score=31.83 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=48.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-cCCCCeE-EEEeeCCCCcccccCCH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-ADSNIVI-MMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~pi-ivv~nK~Dl~~~~~~~~ 84 (163)
.+.+.|+||+|...... ....+..+|.+|++... +..++..+...+..+... .+.+.++ -+|.|+.+. .
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~ 187 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T 187 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence 57789999987643222 22346779999998865 444555554444443322 1234554 478899762 2
Q ss_pred HHHHHHHHHcCCcEE
Q 031238 85 EDGHSLAEKEGLSFL 99 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (163)
+..+++.+.++.+++
T Consensus 188 ~~~~~~~~~~g~~vl 202 (270)
T PRK13185 188 DLIDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHHHcCCCEE
Confidence 334555566665443
No 389
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=90.91 E-value=2.2 Score=31.55 Aligned_cols=65 Identities=14% Similarity=-0.050 Sum_probs=42.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.+.|+|+|+.... .....+..+|.+|++...+ ..++..+...+..+.... ..++.++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence 367899999886432 2234567899999998774 445555555554444332 2366788899874
No 390
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=3.5 Score=37.70 Aligned_cols=68 Identities=25% Similarity=0.293 Sum_probs=43.4
Q ss_pred EEEEeCCChh--------hHhhhhhhh---------hcCCcEEEEEEECCC-----hhHH----HHHHHHHHHHHhhcCC
Q 031238 10 AQIWDTAGQE--------RYRAITSAY---------YRGAVGALLVYDITK-----RQTF----DNVLRWLRELRDHADS 63 (163)
Q Consensus 10 l~l~Dt~G~~--------~~~~~~~~~---------~~~~d~ii~v~d~~~-----~~s~----~~~~~~~~~i~~~~~~ 63 (163)
-.++||+|.. .....|..+ .+.-+|||+..|+.+ +... ..++.-+.++.....-
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~ 255 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA 255 (1188)
T ss_pred eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4688998842 122233322 456799999999864 2111 1233445555555556
Q ss_pred CCeEEEEeeCCCCc
Q 031238 64 NIVIMMAGNKSDLN 77 (163)
Q Consensus 64 ~~piivv~nK~Dl~ 77 (163)
.+||++++||.|+.
T Consensus 256 ~~PVYl~lTk~Dll 269 (1188)
T COG3523 256 RLPVYLVLTKADLL 269 (1188)
T ss_pred CCceEEEEeccccc
Confidence 79999999999985
No 391
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=90.55 E-value=1.7 Score=27.42 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=30.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR 55 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 55 (163)
+.+.++|+++..... ....+..+|.++++.+.+ ..++..+..+++
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 457899998875332 236678899999999774 445555555544
No 392
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.54 E-value=1 Score=36.04 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=34.8
Q ss_pred CEEEEEEEEeCCChhhHh-----hhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHH
Q 031238 5 GKTVKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELR 58 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 58 (163)
.+++.+.|.||+|..... .+.. .-.-+.|-+|+|.|++-.++.+.....++...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 456789999999975422 2211 11224799999999998776655555555443
No 393
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=90.32 E-value=2.5 Score=35.32 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=36.9
Q ss_pred CCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEec--cCCCCCHHHHHHHHHHHH
Q 031238 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETS--ALEATNVEKAFQTILTEI 120 (163)
Q Consensus 63 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~~~~~l~~~~ 120 (163)
.++|++|++||.|... +-..+.+++++++.|+++..+. ++=|+|-.++-+.+++.+
T Consensus 371 FGvPvVVAINKFd~DT--e~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~ 428 (557)
T PRK13505 371 FGVPVVVAINKFVTDT--DAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELI 428 (557)
T ss_pred cCCCEEEEEeCCCCCC--HHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHH
Confidence 4799999999999742 1124667889999998766332 244445555555555444
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.28 E-value=6.1 Score=33.18 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=53.7
Q ss_pred EEEEEEEeCCChhhHhhhhhh---hh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 7 TVKAQIWDTAGQERYRAITSA---YY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~---~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+.+.|+||+|....+..... .+ ......++|++.+.. ..++...+..+... .+.-+|+||.|-..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence 467899999996432211000 01 112356777777642 33333333333322 35568999999521
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~ 122 (163)
..-.........++++..++. |+++ +++...=...++.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt~--GQ~VPeDL~~A~~~~Lv~ 537 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVTD--GQRVPDDLHRANAASLVL 537 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEeC--CCCchhhhhcCCHHHHHH
Confidence 223344455566777766664 6666 4443333334433
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.21 E-value=5.1 Score=28.85 Aligned_cols=91 Identities=20% Similarity=0.118 Sum_probs=49.1
Q ss_pred EEEEEEeCCChhhHhh----hhhhh--hcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 8 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
+.+.|+||+|...... ....+ ....+-+++|.+++...+ ++.+...+ ...+ . -=+|.||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~~--~-~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAFG--I-DGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHSS--T-CEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hccc--C-ceEEEEeecCCC--
Confidence 4689999999643211 11111 125778999999986533 33332222 2211 1 135789999421
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEK 111 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 111 (163)
..-....+....+.++-.++. |+++++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it~--Gq~V~D 181 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYITT--GQRVDD 181 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEES--SSSTTG
T ss_pred --CcccceeHHHHhCCCeEEEEC--CCChhc
Confidence 223344566667877766664 555543
No 396
>CHL00175 minD septum-site determining protein; Validated
Probab=90.14 E-value=2.5 Score=31.90 Aligned_cols=65 Identities=11% Similarity=-0.082 Sum_probs=41.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.+.++|+|+.... .....+..+|.+++|.+.+ ..++..+...+..+..... ..+-+|.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~--~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI--YNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC--CceEEEEeccCh
Confidence 467899999986432 2334567799999998764 4455555555555544322 345678899874
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.91 E-value=1.2 Score=30.59 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=24.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
.+.+.|+||+|..... ..++..+|-+|++...+
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG 123 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCC
Confidence 4678999999965322 34788999999998765
No 398
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=89.79 E-value=1.5 Score=30.83 Aligned_cols=67 Identities=13% Similarity=0.038 Sum_probs=47.0
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.+.+.|+++..... ....+..+|.+|++++.+. .++..+..+...+.........+.+|.|+.+..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 668999998865443 4557789999999999854 446666666666655532213567899999863
No 399
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=89.49 E-value=1.7 Score=34.00 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=52.8
Q ss_pred EEEEEEeCCChhhHhhhhhhh-----h---cCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQERYRAITSAY-----Y---RGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
....++++.|.-.-......+ + -.-|++|-|+|+.+-.. ...+...+........ ++++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-----~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-----VIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-----EEEEecccCCC
Confidence 455677887753322222222 2 13588999999987433 2223333333333322 78999999975
Q ss_pred cccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHH
Q 031238 79 LRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKA 112 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 112 (163)
... .+..+...+..+ .+++.++. .+....++
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence 443 334444555543 46777777 33343333
No 400
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=88.81 E-value=1.8 Score=32.07 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=43.4
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHh---hcCCCCeEEEEeeCCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD---HADSNIVIMMAGNKSD 75 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piivv~nK~D 75 (163)
+.+.+.|+|++|... ......+..+|.+|+.+.++ +.++......+..+.. ..+.+.|..++.|..+
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 357899999999764 33455678899999888764 3344444333333322 2233678789999886
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.66 E-value=6.2 Score=27.32 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=43.4
Q ss_pred EEEEEEEeCCChhhH-----hhhhhhh-hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 7 TVKAQIWDTAGQERY-----RAITSAY-YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~-----~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
...+.+.|++|...+ ..+.... ....+.+++|+|+....+.. .+...+.+..+ ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~---~~~~~~~~~~~---~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV---NQAKAFNEALG---ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH---HHHHHHHhhCC---CCEEEEECCcCCCC-
Confidence 345788999997422 2111110 12489999999987543321 22333322222 24567799996321
Q ss_pred cCCHHHHHHHHHHcCCcEE
Q 031238 81 AVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ 99 (163)
...+...+...++++.
T Consensus 155 ---~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 ---GGAALSIRAVTGKPIK 170 (173)
T ss_pred ---cchhhhhHHHHCcCeE
Confidence 1222335555565544
No 402
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.97 E-value=6.6 Score=34.37 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=57.6
Q ss_pred EEEEEEeCCChhhH----hhhhhhh--hcCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 8 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
..+.|+||+|.... ....... ....+-+++|.|++. .+.+.++...|...... + +-=+|+||.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~---~-i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE---D-VDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC---C-CCEEEEeccCCCC--
Confidence 46899999994221 1111111 223567889999984 44455554333322100 1 2246899999422
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~~~ 124 (163)
..=.+..+....++++..++. |++| +++...-.+.+.+..
T Consensus 338 --~~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~~l 378 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVDRA 378 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHHHH
Confidence 122334455666777777665 7777 666444444444443
No 403
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=87.72 E-value=5.5 Score=29.81 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=38.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeE-EEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVI-MMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~Dl 76 (163)
.+.+.|+||+|......+ ...+..+|.+|++...+ ..++..+...+..+.... ..+.++ .+|.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 467899999876432221 23477899999998764 333433333333222211 124443 468899873
No 404
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.77 E-value=5.2 Score=29.94 Aligned_cols=67 Identities=10% Similarity=-0.013 Sum_probs=42.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----C--CCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA----D--SNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~--~~~piivv~nK~Dl 76 (163)
.+.+.+.|+|+..... ....+..+|.+|++.+++. .++..+..++..+.... + .+.+..++.|+.|.
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 4788999998776433 2345788999999988753 34555554444443211 1 12345678898874
No 405
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=86.64 E-value=6.7 Score=31.16 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=24.8
Q ss_pred CCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 31 GAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 31 ~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++|+++|.+.++. .-+--++ ..+..+. . .+.+|=|+.|.|+.
T Consensus 133 RVH~cLYFI~Ptgh~l~~~DI-e~Mk~ls---~-~vNlIPVI~KaD~l 175 (373)
T COG5019 133 RVHACLYFIRPTGHGLKPLDI-EAMKRLS---K-RVNLIPVIAKADTL 175 (373)
T ss_pred ceEEEEEEecCCCCCCCHHHH-HHHHHHh---c-ccCeeeeeeccccC
Confidence 4799999998874 2221122 2233332 2 35566778899974
No 406
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=86.16 E-value=3.5 Score=29.51 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=40.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+.|.|+|...... ......+.+|.+|+|.+... .+...+......+... + ...+-+|.||.+..
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~-~-~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQT-G-SNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC-C-CCEEEEEEeCcccc
Confidence 4678899998632211 12234567999999998853 2344444444444433 1 13456799999863
No 407
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.98 E-value=2.4 Score=34.38 Aligned_cols=63 Identities=22% Similarity=0.063 Sum_probs=37.7
Q ss_pred EEEEEEeCCChhhHhh-----hh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 8 VKAQIWDTAGQERYRA-----IT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~-----~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
+.+.+.||+|....+. +. -.-.-+.|=+++|+|+.-++...+...-|.+-.... =||+||.|-
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it------GvIlTKlDG 251 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT------GVILTKLDG 251 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc------eEEEEcccC
Confidence 5688999999754322 11 112346788999999987665555544444432221 245666664
No 408
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=85.91 E-value=8 Score=28.92 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=47.1
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeE-EEEeeCCCCcccccCCH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVI-MMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~Dl~~~~~~~~ 84 (163)
.+.+.|+||+|....... ...+..+|.+|++... +..++..+...+..+.... ..+.++ .+|.|+.+..
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~------- 185 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT------- 185 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-------
Confidence 478899999875432222 1346779999998755 3334444444433333221 224543 5788998742
Q ss_pred HHHHHHHHHcCCcEEE
Q 031238 85 EDGHSLAEKEGLSFLE 100 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (163)
+....+.+..+.+++.
T Consensus 186 ~~~~~~~~~~~~~vl~ 201 (268)
T TIGR01281 186 DLIERFNERVGMPVLG 201 (268)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 2334444555655543
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=85.74 E-value=12 Score=29.12 Aligned_cols=96 Identities=9% Similarity=0.074 Sum_probs=49.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhc--------CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
....++++.|.-.-..+...++. .-+++|.|+|+.+......-...+...... .+ +||.||.|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~--AD---~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY--AD---RILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh--CC---EEEEeccccCCH
Confidence 45678888887654444433322 248899999997643221111111111112 12 678999998642
Q ss_pred ccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHH
Q 031238 80 RAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAF 113 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~ 113 (163)
.+......+..+ .+++.++ ........+|
T Consensus 166 ----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 166 ----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred ----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 134444444443 3555543 2223444444
No 410
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.26 E-value=4.8 Score=29.89 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=60.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
.+.+.|.|+.|... .+....+..+|.||+=.-.+..+.. .....|+..+.+....++|.-|+.|+..-.. .....
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence 35789999988653 2345667789999888766643322 2334566666554455799999999986321 11111
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 114 (163)
..+.++.. +++++.+.-.......++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22233332 47777776666444444443
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.84 E-value=10 Score=30.77 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=55.5
Q ss_pred EEEEEEeCCChhhHh----hhhhhhhc---CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
+.+.|+||+|..... .....++. ...-+++|++++-. ..+.++ +..+... + +-=+|.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---C-CCEEEEecccccc-
Confidence 578999999974332 12222333 33467888888743 334333 3332211 1 1247899999521
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~ 122 (163)
..-.+..+....++++..++. |+++ +++...=.+.+..
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~ 410 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVR 410 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHH
Confidence 222455666677888777665 6664 5543333333433
No 412
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=84.53 E-value=2.2 Score=32.51 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=23.6
Q ss_pred EEEEEeCCChhhH----hhhhh---hhhcCCcEEEEEEECC
Q 031238 9 KAQIWDTAGQERY----RAITS---AYYRGAVGALLVYDIT 42 (163)
Q Consensus 9 ~l~l~Dt~G~~~~----~~~~~---~~~~~~d~ii~v~d~~ 42 (163)
.++++|+||...- ..+.. ..++++|++++|+|+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 5899999996431 12222 2367899999999873
No 413
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=84.12 E-value=7.7 Score=31.69 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=39.9
Q ss_pred cEEEEEEECC--C--hhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEecc
Q 031238 33 VGALLVYDIT--K--RQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 33 d~ii~v~d~~--~--~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
=|+++.-|-+ + ++++.+. ..-+.+++.. ++|++++.|-.+-- .+-..+...++..+++.+++.+++
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeeh
Confidence 3555555544 1 3455444 3455555544 68999999988642 222345566677777888777766
No 414
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=83.91 E-value=12 Score=27.85 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=36.1
Q ss_pred EEEEEEEeCCChhhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEE-EEeeC
Q 031238 7 TVKAQIWDTAGQERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIM-MAGNK 73 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-vv~nK 73 (163)
.+.+.|+|++|......+. ...+.-+|.+|+++..+ +.++..+..++..+..... .+.++. +|.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 4678999998764322221 11223599999998764 4455555444444433321 234554 44454
No 415
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.69 E-value=6.4 Score=31.27 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=54.8
Q ss_pred cCEEEEEEEEeCCChhh------------------H-------hhhhhhhhc--CCcEEEEEEECCCh-hHHHHHHHHHH
Q 031238 4 EGKTVKAQIWDTAGQER------------------Y-------RAITSAYYR--GAVGALLVYDITKR-QTFDNVLRWLR 55 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~------------------~-------~~~~~~~~~--~~d~ii~v~d~~~~-~s~~~~~~~~~ 55 (163)
+|..+.|.+.||||.-+ + ..+.+..+. ++|+++|.+..+.. -.--++ ..+.
T Consensus 75 ~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk 153 (366)
T KOG2655|consen 75 NGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMK 153 (366)
T ss_pred CCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHH
Confidence 56778899999999411 1 011112233 68999999988742 111111 2222
Q ss_pred HHHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcEEEeccCC
Q 031238 56 ELRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 56 ~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
.+ .. .+.+|-|+-|.|.....+. -...+.+.+...++++|......
T Consensus 154 ~l---~~-~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 154 KL---SK-KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HH---hc-cccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 22 22 4667778899997543322 23445556667777766555443
No 416
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=83.65 E-value=4.3 Score=31.58 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=54.0
Q ss_pred eCCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHH
Q 031238 14 DTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92 (163)
Q Consensus 14 Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 92 (163)
+.+|+..- -...+..++..|.||=|=|+.-|-|-.. ..++.+. + .+|=|+|.||+||.+..+ ....++.+..
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~---~-~k~riiVlNK~DLad~~~-~k~~iq~~~~ 100 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL---P-PKPRIIVLNKMDLADPKE-QKKIIQYLEW 100 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc---C-CCceEEEEecccccCchh-hhHHHHHHHh
Confidence 34555322 2234566888999999999987644221 1222222 2 577799999999976332 2445555554
Q ss_pred HcCCcEEEeccCCCCC--HHHHHHHH
Q 031238 93 KEGLSFLETSALEATN--VEKAFQTI 116 (163)
Q Consensus 93 ~~~~~~~~~Sa~~~~~--i~~~~~~l 116 (163)
.....++..++....+ +..++..+
T Consensus 101 ~~~~~~~~~~c~~~~~~~v~~l~~il 126 (335)
T KOG2485|consen 101 QNLESYIKLDCNKDCNKQVSPLLKIL 126 (335)
T ss_pred hcccchhhhhhhhhhhhccccHHHHH
Confidence 4333455555444333 44444433
No 417
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=83.62 E-value=18 Score=27.72 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=39.1
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCe-EEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIV-IMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p-iivv~nK~Dl 76 (163)
.+.+.++||+|......+. ..+..+|.+|++.+.+ ..++..+...+..+.... ..+.+ .-+|.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 4678999998763222221 2356799999988764 445555444433333221 12333 3478899873
No 418
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=83.54 E-value=4.7 Score=29.56 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=39.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 76 (163)
.+.+.++|+++.... .....+..+|.+|++.+.+- .++.++........ .. +.+ +.++.|+.+.
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-~~--~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-KL--GTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-hc--CCceEEEEEECCCc
Confidence 467899999986543 23345667999999998753 34444433322222 21 234 5689999875
No 419
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=82.85 E-value=2.1 Score=30.15 Aligned_cols=81 Identities=21% Similarity=0.139 Sum_probs=41.4
Q ss_pred EEEEEEeCCChhhHhhh--hhh---hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 8 VKAQIWDTAGQERYRAI--TSA---YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~--~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
....|.++.|...-..+ ... ..-..+.+|.|+|+.+..........+........ ++++||.|+.... .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-h
Confidence 34566677774332222 011 12246899999999775434444444444443333 6889999986533 1
Q ss_pred CHHHHHHHHHHc
Q 031238 83 TEEDGHSLAEKE 94 (163)
Q Consensus 83 ~~~~~~~~~~~~ 94 (163)
..+..++..+..
T Consensus 159 ~i~~~~~~ir~l 170 (178)
T PF02492_consen 159 KIERVREMIREL 170 (178)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 224444444443
No 420
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.40 E-value=3.6 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=13.7
Q ss_pred HHHHcCCcEEEeccCCCCCHHHHHHHH
Q 031238 90 LAEKEGLSFLETSALEATNVEKAFQTI 116 (163)
Q Consensus 90 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l 116 (163)
..+..|++++.+|+++++|++++.+.+
T Consensus 7 ~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 7 QYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 334455555555555555555554433
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=81.52 E-value=23 Score=29.38 Aligned_cols=103 Identities=18% Similarity=0.115 Sum_probs=53.0
Q ss_pred EEEEEEeCCChhhHhh---hhhhhhcC---CcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 8 VKAQIWDTAGQERYRA---ITSAYYRG---AVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~---~~~~~~~~---~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
..+.++||+|...... .....+.. ..-.++|+|++. ...+.++...+.. ...--+|+||.|-..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-------~~~~g~IlTKlDet~-- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-------PGLAGCILTKLDEAA-- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-------CCCCEEEEeCCCCcc--
Confidence 3578999999432211 11112222 223688889874 3334333322221 123346789999421
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYHI 123 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~~ 123 (163)
..-.+..+....++++..++. |++| +++-..-.+.+.+.
T Consensus 406 --~~G~~l~i~~~~~lPI~yvt~--GQ~VPeDL~~a~~~~lv~~ 445 (484)
T PRK06995 406 --SLGGALDVVIRYKLPLHYVSN--GQRVPEDLHLANKKFLLHR 445 (484)
T ss_pred --cchHHHHHHHHHCCCeEEEec--CCCChhhhccCCHHHHHHH
Confidence 223345566666777766654 7777 65543333344333
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.11 E-value=18 Score=29.09 Aligned_cols=95 Identities=12% Similarity=-0.016 Sum_probs=51.2
Q ss_pred EEEEEEEeCCChhhHhh----hhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 7 TVKAQIWDTAGQERYRA----ITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~----~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.+.+.|.||+|.-..+. ....++.. ..-+++|+|++... ..+...+..+... -+-=+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 45789999999643221 11222332 22588999998652 2333334433221 12246889999421
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNV-EKAF 113 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~ 113 (163)
..=.+..++...++++..++. |+++ +++.
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit~--Gq~vPeDl~ 356 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVTD--GQIVPHNIS 356 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEeC--CCCChhhhh
Confidence 122334455566777666554 6666 5443
No 423
>PRK11670 antiporter inner membrane protein; Provisional
Probab=81.08 E-value=23 Score=28.21 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=37.1
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl 76 (163)
.+.+.++|+|..-.-..+....+-.+|++|+|.... ..++.+....+..+.+ .+.|+ -+|.|+.+.
T Consensus 215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~-~~s~~da~~~i~~~~~---~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQ-DIALIDAKKGIVMFEK---VEVPVLGIVENMSMH 281 (369)
T ss_pred cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCc-hhHHHHHHHHHHHHhc---cCCCeEEEEEcCCcc
Confidence 467899999864321112222334589988888653 3344444444433322 24665 478898774
No 424
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=80.97 E-value=17 Score=27.87 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=44.3
Q ss_pred EEEEEEEeCCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHH---HHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 7 TVKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.+.+.|+|++|...- .......+..+|.+|++.+.+ ..++.. +...+..+......-.++.+|.|+.+..
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~----- 195 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS----- 195 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc-----
Confidence 578899998764210 111112234688888887653 334433 3444444433321123466889998742
Q ss_pred CHHHHHHHHHHcCCcE
Q 031238 83 TEEDGHSLAEKEGLSF 98 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~ 98 (163)
...+++++..++++
T Consensus 196 --~~~~~~~~~~~i~v 209 (296)
T TIGR02016 196 --GEAQAFAREVGIPV 209 (296)
T ss_pred --cHHHHHHHHcCCCe
Confidence 13355566666543
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.38 E-value=13 Score=28.22 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=46.6
Q ss_pred EEEEEEEeCCChhhH-----hhhhhhhh--cCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERY-----RAITSAYY--RGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~-----~~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+.|+||+|.... ..+. .++ ...+-+++|+|++. +... ..++..+... .+-=+|+||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~-~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~~----~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMI-ETMGQVEPDYICLTLSASMKSKDM---IEIITNFKDI----HIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHH-HHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCCC----CCCEEEEEeecCCC
Confidence 467899999997532 1121 222 24567899999874 3333 3333333322 12246889999532
Q ss_pred cccCCHHHHHHHHHHcCCcEEEecc
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
. .=.+..++...+.++..++.
T Consensus 226 ~----~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 226 S----SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred C----ccHHHHHHHHHCcCEEEEeC
Confidence 1 12334455566777666554
No 426
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.21 E-value=11 Score=31.29 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=44.8
Q ss_pred EEEEEEEeCCChhhHhh--h--hhh--hhcCCcEEEEEEECC-ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYRA--I--TSA--YYRGAVGALLVYDIT-KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~--~--~~~--~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+.|.||+|...-+. + ... -....|.|++|=.+- .-++.+.+..+-..+.....+..---++++|+|..+
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 45689999999754221 1 111 245689999997654 345677777766666555432222356889999754
No 427
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=78.33 E-value=27 Score=26.49 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=52.7
Q ss_pred cCEEEEEEEEeCCChhh------------------Hhh--------hhhhhhc--CCcEEEEEEECCChhHHHHHH-HHH
Q 031238 4 EGKTVKAQIWDTAGQER------------------YRA--------ITSAYYR--GAVGALLVYDITKRQTFDNVL-RWL 54 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~------------------~~~--------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~-~~~ 54 (163)
+|-.+++.++||||.-+ |.. .+..++. ++++++|.+..+.. ++.-+. ..+
T Consensus 100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDiefl 178 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFL 178 (336)
T ss_pred cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHH
Confidence 56677889999999411 111 1112222 36888888888742 222221 222
Q ss_pred HHHHhhcCCCCeEEEEeeCCCCc--ccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238 55 RELRDHADSNIVIMMAGNKSDLN--HLRAVTEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 55 ~~i~~~~~~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
..+.+. +.++-|+-|.|.. +.+..-...+++-...+++.+++--+.+
T Consensus 179 krLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 179 KRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccc
Confidence 333222 4456677899953 2233334445556667788777655544
No 428
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.79 E-value=4.9 Score=30.62 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=20.8
Q ss_pred EEEeCCChhhHhhhhh-----hhhcCCcEEEEEEECCChhH
Q 031238 11 QIWDTAGQERYRAITS-----AYYRGAVGALLVYDITKRQT 46 (163)
Q Consensus 11 ~l~Dt~G~~~~~~~~~-----~~~~~~d~ii~v~d~~~~~s 46 (163)
.+|+.+|......+.. .-++.+ .+|++.|+++++.
T Consensus 95 N~WELGgg~~~~~LLsVPit~~~l~~~-slIL~LDls~p~~ 134 (363)
T KOG3929|consen 95 NFWELGGGTSLLDLLSVPITGDTLRTF-SLILVLDLSKPND 134 (363)
T ss_pred HHHHhcCCccHHHHhcCcccccchhhh-hheeeeecCChHH
Confidence 4677777655433322 223333 5688899998754
No 429
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=77.59 E-value=14 Score=26.73 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=41.0
Q ss_pred EEEEEEeCCCh-hhHhhhhhhhhcC--CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 8 VKAQIWDTAGQ-ERYRAITSAYYRG--AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~-~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
+.+.++|+|.. .....+....+.+ +|.+++|...+ ..+..++...+..+....- ...-+|.|+...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~~--~~~glVlN~~~~ 182 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYGI--PVDAVVVNRVLP 182 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCCC--CCCEEEEeCCcC
Confidence 77899999864 2233333344444 48899998775 4456666666666654422 233578898864
No 430
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=76.54 E-value=27 Score=26.16 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=35.4
Q ss_pred EEEEEEEeCCChhhHhhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEE-EEeeC
Q 031238 7 TVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIM-MAGNK 73 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-vv~nK 73 (163)
.+.+.++|++|......+ ....+.-+|.+|+++.+ ++.++..+..++..+..... .+.++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p-~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecc-hHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 467899999775422221 11112368999999866 44456555555444333221 234544 44454
No 431
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=76.36 E-value=23 Score=27.80 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=54.7
Q ss_pred EEEEEEEeCCChhhHhhh-hhhhhcCCcEEEEEEECCChhHHH---HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 7 TVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDITKRQTFD---NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
.+.+.|+|+.|...-..+ ......-+|.+|+|- ..+..++. .+...+..+.+....-..+-+|.|+.|...
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~i~~~~ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~---- 221 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLPIARDMAQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG---- 221 (329)
T ss_pred cCCEEEEecCCcceeccccchhhhcCCceEEEeC-CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc----
Confidence 457889999875431111 111112355555553 33444553 344555555544221123678999998521
Q ss_pred CHHHHHHHHHHcCCcEEEe---------c-------cCCCCCHHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLET---------S-------ALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~---------S-------a~~~~~i~~~~~~l~~~~~~~ 123 (163)
.++.+++..+++++.. + ...+..+.+.|..+.+.+...
T Consensus 222 ---~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~ 275 (329)
T cd02033 222 ---EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEA 275 (329)
T ss_pred ---hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHh
Confidence 2455555555543221 0 111223567777777777663
No 432
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=75.23 E-value=26 Score=27.53 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=23.7
Q ss_pred EEEEEEeCCChhhHhhhhhhh----hc---CCcEEEEEEECCC
Q 031238 8 VKAQIWDTAGQERYRAITSAY----YR---GAVGALLVYDITK 43 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~----~~---~~d~ii~v~d~~~ 43 (163)
....++++.|.-.-..+...+ +. ..|++|.|+|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 456788898875544443332 11 3589999999974
No 433
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.19 E-value=32 Score=28.04 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=55.7
Q ss_pred EEEEEEeCCChhhHh----hhhhhhh--cCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 8 VKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
..+.++||+|..... .....+. ....-.++|+|++. ...+.++ +..+... -+-=+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~~----~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQGH----GIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcCC----CCCEEEEEeeeCCC--
Confidence 457899999964321 1222221 22456789999984 4444433 3332211 12246889999421
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~~~ 124 (163)
..=.+..++...++++..++. |+++ +++...-.+.+....
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt~--Gq~VP~Dl~~a~~~~lv~~l 381 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVTN--GQKVPEDLHEANSRYLLHRI 381 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEEC--CCCchhhhhhCCHHHHHHHH
Confidence 122334455666777766654 6676 555444444444443
No 434
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.10 E-value=40 Score=27.05 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=47.2
Q ss_pred EEEEEEeCCChhhHhh----hhhhh--hcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCC--CeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSN--IVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~ 78 (163)
..+.|+||+|....+. ..... .....-.++|++++.. +.+.++..-+.......... -+-=+|+||.|-..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 4688999999653322 11111 1234556899999864 44554433333322110000 02246789999421
Q ss_pred cccCCHHHHHHHHHHcCCcEEEecc
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
..=.+..+....++++..++.
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEec
Confidence 122334455556776666554
No 435
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=74.98 E-value=25 Score=26.35 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=39.3
Q ss_pred EEEEEEEeCCChhhHhhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~D 75 (163)
.+.+.++|++|......+ ....+..+|.++++... ++.++..+...+..+......+.++. +|.|+.+
T Consensus 116 ~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p-~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 116 DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASG-ELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cCCEEEEecCCCeeECCEeccccccccceEEEecCc-hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 467899999765421211 11113478988888864 55566665555555554322345553 6778764
No 436
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.98 E-value=22 Score=28.93 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=46.4
Q ss_pred EEEEEEEeCCChhhH-----hhhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 7 TVKAQIWDTAGQERY-----RAITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~-----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
.+.+.|+||+|.... ..+ ..++ ...+.+++|+|++-.. .++...+..+... + .-=+|+||.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL-~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~---~-idglI~TKLDET~- 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEM-IETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---H-IDGIVFTKFDETA- 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHH-HHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC---C-CCEEEEEcccCCC-
Confidence 357899999997432 112 2222 2357789999986432 2223333333321 1 1246889999532
Q ss_pred ccCCHHHHHHHHHHcCCcEEEecc
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
..=.+..++...++++..++.
T Consensus 392 ---k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 392 ---SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred ---CccHHHHHHHHHCcCEEEEeC
Confidence 122334455666777666554
No 437
>PRK13695 putative NTPase; Provisional
Probab=74.32 E-value=26 Score=24.27 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=43.6
Q ss_pred hhhhcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238 26 SAYYRGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 104 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 104 (163)
...+.++++ +++|--.+ +... ..+...+......+.|+|++.+|... ......+..-.+..++.+
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---
Confidence 344566777 57773111 1111 12222332222336899999998543 122333444455566666
Q ss_pred CCCCHHHHHHHHHHHH
Q 031238 105 EATNVEKAFQTILTEI 120 (163)
Q Consensus 105 ~~~~i~~~~~~l~~~~ 120 (163)
+.+|-+++.+.+++.+
T Consensus 157 ~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 TPENRDSLPFEILNRL 172 (174)
T ss_pred cchhhhhHHHHHHHHH
Confidence 6678888888777754
No 438
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=73.28 E-value=29 Score=24.30 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=53.9
Q ss_pred cEEEEEEECCC----hhH---HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238 33 VGALLVYDITK----RQT---FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 33 d~ii~v~d~~~----~~s---~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
++--+|+|=++ |.+ +.....-++.++...+ .+.++++-|-.-+ .+.+...++++.+..+.|++++..|.+.
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vyg-ek~i~v~SNsaG~-~~~D~d~s~Ak~le~k~gIpVlRHs~kK 119 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYG-EKDIAVFSNSAGL-TEYDHDDSKAKALEAKIGIPVLRHSVKK 119 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhC-cccEEEEecCcCc-cccCCchHHHHHHHHhhCCceEeecccC
Confidence 45556666654 211 1222222333333333 4677888777655 2355678888889999999999999999
Q ss_pred CCCHHHHHHHHH
Q 031238 106 ATNVEKAFQTIL 117 (163)
Q Consensus 106 ~~~i~~~~~~l~ 117 (163)
.....|+.+...
T Consensus 120 P~ct~E~~~y~~ 131 (190)
T KOG2961|consen 120 PACTAEEVEYHF 131 (190)
T ss_pred CCccHHHHHHHh
Confidence 998888776554
No 439
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=73.19 E-value=15 Score=29.35 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=29.3
Q ss_pred CCeEEEEeeCCCCcccccCC--HHHHHHHHHHcCCcEEEeccCC
Q 031238 64 NIVIMMAGNKSDLNHLRAVT--EEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
.+|+++++||.|...... . ...+++++...+.+++.+||.-
T Consensus 206 ~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 206 AKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred cCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 589999999999743222 2 3455666667677899999854
No 440
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.13 E-value=41 Score=27.25 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=48.4
Q ss_pred EEEEEEEeCCChhhHhh----hhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 7 TVKAQIWDTAGQERYRA----ITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.+.|+||+|...... ....+.. ..+.+++|.+++.. ..++...+..+... .+--+|+||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~l----~i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAEI----PIDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCcC----CCCEEEEEcccCCC--
Confidence 36789999999843211 1122222 34677778776432 22333333332211 12256899999532
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVE 110 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 110 (163)
..=.+...+...++++..++. |+++.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~--GQ~Vp 382 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTD--GQNIT 382 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEec--CCCCC
Confidence 122334455666777766665 55544
No 441
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=70.43 E-value=30 Score=28.92 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEec--cCCCCCHHHHHHHHHHHH
Q 031238 54 LRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETS--ALEATNVEKAFQTILTEI 120 (163)
Q Consensus 54 ~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~~~~~l~~~~ 120 (163)
...+......++|++|.+|+.... .+-..+.+++++++.|+.+..+. ++=|+|-.++-+.+++.+
T Consensus 346 ~~Hi~n~~~fg~p~VVaiN~F~~D--t~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~ 412 (524)
T cd00477 346 RKHIENIKKFGVPVVVAINKFSTD--TDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEAC 412 (524)
T ss_pred HHHHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHh
Confidence 333333333479999999998642 22234567888888888665542 344556666666665544
No 442
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=70.43 E-value=17 Score=27.22 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=31.3
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHh
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD 59 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 59 (163)
.+.+.|+|+|..... .-.......+|++|+|.... ..+..++......+..
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVN-ETRLHELTSLKEHLSG 262 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHh
Confidence 466889999865322 12234566789999888764 3345555555555554
No 443
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.39 E-value=24 Score=22.10 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=8.6
Q ss_pred HHHHHHHHHcCCcEEEe
Q 031238 85 EDGHSLAEKEGLSFLET 101 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (163)
..+++.++..+.+++.+
T Consensus 65 ~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 34444555555555554
No 444
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=69.88 E-value=32 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=37.4
Q ss_pred HHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCC---CHHHHHHHHHHHH
Q 031238 56 ELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT---NVEKAFQTILTEI 120 (163)
Q Consensus 56 ~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~---~i~~~~~~l~~~~ 120 (163)
.+......++|++|.+|+.... .+...+.+++++.+.++.+.. |..+.. |-.++-+.+++.+
T Consensus 393 Hi~n~~~fg~pvVVaiN~F~~D--t~~Ei~~l~~~~~~~g~~~~v-~~~wa~GGeGa~eLA~~Vv~a~ 457 (587)
T PRK13507 393 HIGTVKKSGINPVVCINAFYTD--THAEIAIVRRLAEQAGARVAV-SRHWEKGGEGALELADAVIDAC 457 (587)
T ss_pred HHHHHHHcCCCeEEEeCCCCCC--CHHHHHHHHHHHHHcCCCEEE-echhhccchhHHHHHHHHHHHh
Confidence 3333333579999999998643 222345677788888886553 444444 4555555555443
No 445
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.60 E-value=30 Score=28.29 Aligned_cols=86 Identities=22% Similarity=0.139 Sum_probs=45.4
Q ss_pred EEEEEEEeCCChhhHh----hhhhhhhc-----CCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYR----AITSAYYR-----GAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~----~~~~~~~~-----~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.+.|+||+|..... ..+..+++ ...-.++|+|++... ...++.. .+... + +-=+|+||.|=
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~---~f~~~-~---~~glIlTKLDE 371 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK---AYESL-N---YRRILLTKLDE 371 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH---HhcCC-C---CCEEEEEcccC
Confidence 4578999999964211 11122222 234678999998643 3333332 22211 1 22468899994
Q ss_pred cccccCCHHHHHHHHHHcCCcEEEecc
Q 031238 77 NHLRAVTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
.. . .=.+..+....++++..++.
T Consensus 372 t~--~--~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 372 AD--F--LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CC--C--ccHHHHHHHHHCCCEEEEec
Confidence 21 1 11234455566777666654
No 446
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=68.03 E-value=49 Score=24.90 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=29.9
Q ss_pred EEEEEEEeCCChhhHhhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHH
Q 031238 7 TVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR 58 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 58 (163)
.+.+.|+|++|......+ ....+.-+|.+|++... ++.++..+...+..+.
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p-~~~si~~~~~ll~~i~ 167 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTC-DPMAIYAANNICKGIK 167 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccc-hHHHHHHHHHHHHHHH
Confidence 477899999774322221 11223458999999876 4455655554444443
No 447
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=67.77 E-value=19 Score=31.48 Aligned_cols=67 Identities=19% Similarity=0.037 Sum_probs=43.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+.++|+|+....... .....-+|++|+|... +..+...+...+..+.... ...+-+|.|+.|..
T Consensus 655 ~yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~~--~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRLN--GEVTGVFLNMLDPN 721 (754)
T ss_pred hCCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhcC--CceEEEEecCCChh
Confidence 467899999987653332 2345579999999875 4445556666666665432 23446899999863
No 448
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=66.28 E-value=25 Score=27.16 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=40.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.+.+.++|+++... ......+..+|.+|++.+.+ ..++.....++..+..... .+-+|.|..
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~~~---~~~lVv~~~ 265 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRRNP---DLRLVVRGP 265 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhhCC---CeEEEEeCC
Confidence 46789999998753 23456788999999998764 4466666666666554322 334455653
No 449
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=65.77 E-value=65 Score=26.16 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=36.2
Q ss_pred EEEEEEEeCCChhhHhh----hhhhhhcC--CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRA----ITSAYYRG--AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~----~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~D 75 (163)
.+.+.|.||.|...++. ....++.. ..-+.+|++++.. .++++..+..+... |+ =+++||.|
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlD 349 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLD 349 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEccc
Confidence 34789999999754432 22233332 3456677788754 33444445444322 22 46889999
No 450
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=65.69 E-value=45 Score=27.58 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=39.1
Q ss_pred CCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEe--ccCCCCCHHHHHHHHHHHHHH
Q 031238 62 DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET--SALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 62 ~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++|++|.+||.-.. .+-....+++++.+++.++..+ =++-++|-.++-+.++..+-+
T Consensus 367 kfgvp~VVAIN~F~tD--t~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 367 KFGVPVVVAINKFPTD--TEAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HcCCCeEEEeccCCCC--CHHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 3579999999997532 2223456778888888765433 346666777777766665543
No 451
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=64.44 E-value=36 Score=22.05 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 31 GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.+++-.+++|.+ ++..+....++..+..... ++|++++.++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~-~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERNF-GIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHST-T-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhCC-CCCEEEEecCC
Confidence 455555555554 4445555677777777765 79999998866
No 452
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=62.89 E-value=44 Score=26.95 Aligned_cols=67 Identities=7% Similarity=0.049 Sum_probs=39.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHH-------HHHHhhcC-CCCeE-EEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-------RELRDHAD-SNIVI-MMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-------~~i~~~~~-~~~pi-ivv~nK~Dl 76 (163)
.+.+.|+|+|+...+ +....+.-+|.+|+.+.++ ..++..+...+ ..+..... .+..+ -++.|+.|.
T Consensus 251 ~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 251 DYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQ-MLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 478899999988754 3344566799999988664 33344433333 22322211 12223 378999884
No 453
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=62.72 E-value=53 Score=26.37 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=38.5
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHH---HHHHhhc---CCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL---RELRDHA---DSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~i~~~~---~~~~piivv~nK~Dl 76 (163)
.+.+.|+|+|+.... .....+.-+|.+|+.+..+ ..++..+...+ ..+.... ..+..+-++.|+.|.
T Consensus 234 ~YD~IiIDtpP~l~~--~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 234 DYDVIVIDSAPNLGI--GTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 467899999987543 3344566789999988653 33444433333 3332210 112234467888874
No 454
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=62.23 E-value=60 Score=26.08 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=38.4
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHH---HHHHHhh---cCCCCeEEEEeeCCCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDH---ADSNIVIMMAGNKSDL 76 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~---~~~~~piivv~nK~Dl 76 (163)
..+.+.|+|+|+...+- ....+.-+|.+|+.+..+ ..++..+.+. +..+... ...+..+-++.|+.|.
T Consensus 233 ~~YD~IlID~pPslg~l--t~nAL~AAd~vliPv~~~-~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (387)
T PHA02519 233 DNYDIIVIDSAPNLGTG--TINVVCAADVIVVATPAE-LFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSL 306 (387)
T ss_pred ccCCEEEEECCCCccHH--HHHHHHHhCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECC
Confidence 35788999999887553 344566689988888654 2233333222 2222211 0112234468899885
No 455
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=61.68 E-value=60 Score=25.85 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=25.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
.+.+.|+|+|+.... .....+.-+|.+|+.+.++
T Consensus 234 ~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~ 267 (387)
T TIGR03453 234 DYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQ 267 (387)
T ss_pred cCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCc
Confidence 467899999987644 3345566799999988764
No 456
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=61.48 E-value=59 Score=27.59 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH-cCCcEEEec--cCCCCCHHHHHHHHHHHH
Q 031238 56 ELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETS--ALEATNVEKAFQTILTEI 120 (163)
Q Consensus 56 ~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S--a~~~~~i~~~~~~l~~~~ 120 (163)
.+......++|++|.+|+.... .+-..+.+++++.+ .++++..+. ++=|+|-.++-+.+++.+
T Consensus 385 Hi~n~~~fg~pvVVaiN~F~~D--t~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~ 450 (578)
T PRK13506 385 HINNVAQYGLPVVVAINRFPTD--TDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRAC 450 (578)
T ss_pred HHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHh
Confidence 3333333579999999998642 22234566778877 455544332 244445666666555444
No 457
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=59.49 E-value=9.4 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 97 SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 97 ~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++..||.++.|++.+++.+.+.+
T Consensus 242 pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 242 PVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHhC
Confidence 689999999999999999888765
No 458
>PRK10037 cell division protein; Provisional
Probab=58.67 E-value=50 Score=24.40 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=27.4
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
..+.+.|+|+|+... ......+.-+|.+|+++..+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 457889999998854 34556788899999999774
No 459
>PLN02759 Formate--tetrahydrofolate ligase
Probab=57.12 E-value=65 Score=27.62 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=37.2
Q ss_pred HHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCC-cEEEecc--CCCCCHHHHHHHHHHHH
Q 031238 56 ELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL-SFLETSA--LEATNVEKAFQTILTEI 120 (163)
Q Consensus 56 ~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa--~~~~~i~~~~~~l~~~~ 120 (163)
.+......++|++|.+|+.... .+...+.+++++.+.|+ ....+.. +=|+|-.++-+.+++.+
T Consensus 442 Hi~n~~~fg~pvVVaiN~F~~D--t~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~ 507 (637)
T PLN02759 442 HIENTKSYGVNVVVAINMFATD--TEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKAC 507 (637)
T ss_pred HHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHH
Confidence 3333333579999999998643 22234567788888884 5444322 33445556655555444
No 460
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=56.93 E-value=79 Score=23.48 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=32.0
Q ss_pred EEEEEEEeCCChhhHhhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh
Q 031238 7 TVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 60 (163)
.+.+.|+|++|......+ .......+|.+|+++.+ ++.++..+..+...+...
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p-~~~si~~~~~~~~~i~~~ 166 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSG-EYMSLYAANNIARGIKKL 166 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecC-chhHHHHHHHHHHHHHHc
Confidence 367889999775422221 11112578999999866 455666666665555443
No 461
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=56.58 E-value=16 Score=29.21 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=26.2
Q ss_pred EEEEEEEeCCChhhH----hhhhhhh---hcCCcEEEEEEECC
Q 031238 7 TVKAQIWDTAGQERY----RAITSAY---YRGAVGALLVYDIT 42 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~----~~~~~~~---~~~~d~ii~v~d~~ 42 (163)
.+.++|+|++|.... ..+...| ++.+|+++.|+|+.
T Consensus 66 ~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 66 PAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred eeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 457899999997542 2333333 67899999999985
No 462
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=56.11 E-value=63 Score=23.13 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=26.9
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR 58 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 58 (163)
.+.++|++....... .......+|.+|+|+.... .+...+...+..+.
T Consensus 150 D~IiiD~pp~~~~~~-~~~l~~~aD~viiV~~~~~-~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 150 RIIIIDTPPLLVFSE-ARALARLVGQIVLVVEEGR-TTQEAVKEALSALE 197 (207)
T ss_pred CEEEEECCCCcchhH-HHHHHHhCCEEEEEEECCC-CCHHHHHHHHHHhc
Confidence 478888876543222 2234556888888887653 23344444444443
No 463
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=55.88 E-value=84 Score=23.49 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=35.6
Q ss_pred EEEEEEEeCCChhhHhhhhhhhh-cCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEE-EEeeCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYY-RGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIM-MAGNKS 74 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-vv~nK~ 74 (163)
.+.+.++|+.|..-.+.+..... .-+|.+|++... ++.++..+...+..+.... ..+.+++ +|.|+.
T Consensus 118 ~yD~iliD~~~~~~~~al~~~~~~~aad~viIp~~p-~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 118 DLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASG-EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCEEEEecCCceeeccccccchhccCceEEEeccc-cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 46789999966322111110000 158888888876 4556665555544442221 2345543 678864
No 464
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=54.20 E-value=11 Score=31.63 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEecc---CCCCCHHHHHHHHHHHH
Q 031238 52 RWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA---LEATNVEKAFQTILTEI 120 (163)
Q Consensus 52 ~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~~~~i~~~~~~l~~~~ 120 (163)
++...+......++|+||.+|+..... +-..+.+.+++++.|+. +.+|. +=|+|-.++-+.+++.+
T Consensus 359 NL~rHIeNik~fGvpvVVAIN~F~tDT--~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 359 NLERHIENIKKFGVPVVVAINRFPTDT--DAEIELIRELCEELGVR-AAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHCTT--EEEEEE--TTS---HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCeEEEecCCCCCC--HHHHHHHHHHHHhCCCC-EEEechhhcccccHHHHHHHHHHHh
Confidence 334444444445899999999986422 11234556677777777 44444 44556667766666665
No 465
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=53.62 E-value=93 Score=23.30 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=37.7
Q ss_pred EEEEEEEEeCCChhhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeE-EEEeeCC
Q 031238 6 KTVKAQIWDTAGQERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVI-MMAGNKS 74 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~ 74 (163)
..+.+.|+|++|..-.+.+. ...+.-+|.+|+++.. ++.++..+...+..+.... ..+..+ -++.|+.
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 34788999997643221111 1112368888888855 5556666655554443331 224544 3567764
No 466
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=52.90 E-value=1.4e+02 Score=25.79 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=54.1
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCC-eEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI-VIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piivv~nK~Dl~~~~~~ 82 (163)
.|+.-.+.|.+++ .+...+. ...+-+|.+++++|.+-+-.++.. .+++.+... +. .++-|+++.|+-... -
T Consensus 109 sgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~-s 180 (1077)
T COG5192 109 SGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNP-S 180 (1077)
T ss_pred ecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccCh-H
Confidence 4566678888888 4444444 336779999999999865333322 333333322 33 467799999985422 1
Q ss_pred CHHHHH-----HH-HHH-cCCcEEEeccCCC
Q 031238 83 TEEDGH-----SL-AEK-EGLSFLETSALEA 106 (163)
Q Consensus 83 ~~~~~~-----~~-~~~-~~~~~~~~Sa~~~ 106 (163)
....++ .+ ..- .|+..|.+|-..+
T Consensus 181 tLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 181 TLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred HHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 111111 12 221 1567787776543
No 467
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=51.62 E-value=1.1e+02 Score=26.27 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHH-HcCC-cEEEec--cCCCCCHHHHHHHHHHHH
Q 031238 55 RELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE-KEGL-SFLETS--ALEATNVEKAFQTILTEI 120 (163)
Q Consensus 55 ~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~-~~~~~S--a~~~~~i~~~~~~l~~~~ 120 (163)
..+......++|+||.+|+.... .+...+.+++++. ..|. .+..+. ++=|+|-.++-+.+++.+
T Consensus 428 ~Hien~~~fgvpvVVAIN~F~tD--T~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~ 495 (625)
T PTZ00386 428 RHIQNIRKFGVPVVVALNKFSTD--TDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVT 495 (625)
T ss_pred HHHHHHHHcCCCeEEEecCCCCC--CHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHH
Confidence 33333333579999999998642 2223456677888 7774 444332 233445566655555444
No 468
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=51.15 E-value=47 Score=21.25 Aligned_cols=43 Identities=9% Similarity=-0.136 Sum_probs=26.9
Q ss_pred hhhcCCcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 27 AYYRGAVGALLVYDITK--RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
..+++||++|..+|... ....-++-..+ . .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~------a-lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAY------A-LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHH------H-TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHH------H-CCCEEEEEEcCCcc
Confidence 44778999999999733 32222222211 1 26899988887654
No 469
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=51.07 E-value=1.1e+02 Score=23.39 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=37.9
Q ss_pred EEEEEEEEeCCChhhHhhhhhhh-hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeE-EEEeeCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAY-YRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVI-MMAGNKS 74 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-ivv~nK~ 74 (163)
+.+.+.|+|++|.--.+.+...+ ...+|.+|+++.. ++.++..+..++..+..... .+..+ -+|.|+.
T Consensus 118 ~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~p-e~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~ 188 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSG-EMMALYAANNIAKGILKYANSGGVRLGGLICNER 188 (295)
T ss_pred ccCCEEEEEcCCCceECCCccccccccCceEEEecCc-cHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 35788999996532111111100 1378999998876 45566666666555554422 23433 4677753
No 470
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=50.67 E-value=19 Score=23.44 Aligned_cols=31 Identities=39% Similarity=0.368 Sum_probs=16.4
Q ss_pred EeeCCCCcccccCCHHHHHHHHHHcC-CcEEEeccC
Q 031238 70 AGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSAL 104 (163)
Q Consensus 70 v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 104 (163)
++||.|+.. ..+-+..+.+.+. ..++.+||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 579999742 3455555555553 567888874
No 471
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=49.89 E-value=44 Score=22.62 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=25.5
Q ss_pred hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEE
Q 031238 24 ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMA 70 (163)
Q Consensus 24 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv 70 (163)
..+..+..+|++|.-|- +.-++|-.-+..-.- .++|+|++
T Consensus 65 RT~~li~~aDvVVvrFG-------ekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFG-------EKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HHHHHHhhCCEEEEEec-------hHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 35567889999999983 234566555543211 36888764
No 472
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=49.39 E-value=54 Score=19.34 Aligned_cols=34 Identities=12% Similarity=-0.089 Sum_probs=23.2
Q ss_pred EEEEeCCChhhHhhh-hhhhhcCCcEEEEEEECCC
Q 031238 10 AQIWDTAGQERYRAI-TSAYYRGAVGALLVYDITK 43 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~ 43 (163)
+.+.|+++....... .......+|.++++++.+.
T Consensus 36 ~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 36 YVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 578898877543321 1355678899999998754
No 473
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=49.09 E-value=47 Score=22.15 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=39.7
Q ss_pred eEEEEeeCCCCc----ccc--cCCHHHHHHHHHHcCC-----cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 66 VIMMAGNKSDLN----HLR--AVTEEDGHSLAEKEGL-----SFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 66 piivv~nK~Dl~----~~~--~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
-|+|+|.|.+-- .+. .-..+...++.++.|+ .++.+||..++.+.+.++...+.+.+.-
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 478889987631 100 0113445566666765 5899999999999888888887776543
No 474
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=48.42 E-value=16 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.5
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 97 SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 97 ~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++..||.++.|+..+++.+.+.+
T Consensus 241 Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 241 PVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEecccccCcCHHHHHHHHHHHC
Confidence 688889999999999999988765
No 475
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=48.03 E-value=33 Score=23.85 Aligned_cols=47 Identities=6% Similarity=-0.080 Sum_probs=28.2
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+..+|++|++....+..---.++.|+..+....-.++|++++.+-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 44778999999987765422223344444432111246888888774
No 476
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=47.16 E-value=45 Score=22.35 Aligned_cols=39 Identities=21% Similarity=0.479 Sum_probs=28.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEE
Q 031238 31 GAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMM 69 (163)
Q Consensus 31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiv 69 (163)
.-|+.||.+-++...+-..+..|+..+.+-++ ..+||+.
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 45788888877766566677899999888665 4677654
No 477
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=46.65 E-value=50 Score=24.15 Aligned_cols=39 Identities=13% Similarity=-0.079 Sum_probs=25.5
Q ss_pred EEEEEEEEeCCChhhHh------hhhhhhhcC--CcEEEEEEECCCh
Q 031238 6 KTVKAQIWDTAGQERYR------AITSAYYRG--AVGALLVYDITKR 44 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~------~~~~~~~~~--~d~ii~v~d~~~~ 44 (163)
....+.++||+|..... ......+.- ++++||..+.+..
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 34689999999975432 122233444 8899988887743
No 478
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=46.53 E-value=1.2e+02 Score=22.73 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=32.5
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.....+|.++.+|+.-+...-..+...+..+.++...+.|+.++-|-.
T Consensus 150 ~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 150 RAAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 345679999999988765433445555566666666678887766644
No 479
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=46.44 E-value=19 Score=27.28 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.7
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 96 LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 96 ~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
++++..||.++.|+..+++.+.+.+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 3688889999999999999888765
No 480
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=46.19 E-value=1.2e+02 Score=22.51 Aligned_cols=96 Identities=9% Similarity=0.088 Sum_probs=46.5
Q ss_pred hcCCcEEEEEEECCChhHHHHH-HHHH-HHHHh-hcCCCCeEEEEeeCCCCccccc---CCHHHHHHHHHHcCCcEEEec
Q 031238 29 YRGAVGALLVYDITKRQTFDNV-LRWL-RELRD-HADSNIVIMMAGNKSDLNHLRA---VTEEDGHSLAEKEGLSFLETS 102 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~-~~~~-~~i~~-~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~S 102 (163)
+.+.|.+++|+=-+....--.+ ..|- ..+.. ....++-.|+-.|..-+..... ...+.+....+.+|++.+++.
T Consensus 76 ~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VD 155 (227)
T cd02011 76 FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVE 155 (227)
T ss_pred hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEEC
Confidence 5677888888844322111111 1232 11111 1112333344566654432222 234566777788898888874
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 031238 103 ALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 103 a~~~~~i~~~~~~l~~~~~~~~ 124 (163)
-.+-..+.+.+..+++.+.+.+
T Consensus 156 G~D~~av~~~~a~a~~~~~~~i 177 (227)
T cd02011 156 GDDPETMHQAMAATLDWAIEEI 177 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3332234445555555555544
No 481
>PRK06756 flavodoxin; Provisional
Probab=45.37 E-value=47 Score=22.28 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=27.8
Q ss_pred hhcCCcEEEEEEECCChhHHH-HHHHHHHHHHhhcCCCCeEEEEee
Q 031238 28 YYRGAVGALLVYDITKRQTFD-NVLRWLRELRDHADSNIVIMMAGN 72 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~n 72 (163)
.+.+.|++++.........+. .+..++..+......++++.++++
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 356789988887554322222 355666665443335788999888
No 482
>PRK13556 azoreductase; Provisional
Probab=45.04 E-value=1.1e+02 Score=21.86 Aligned_cols=47 Identities=4% Similarity=0.045 Sum_probs=31.2
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-------------CCCCeEEEEeeC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-------------DSNIVIMMAGNK 73 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~piivv~nK 73 (163)
..++.||++|+++..-+..---.++.|+..+.... ..+++++++.+-
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~ts 144 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeC
Confidence 44778999999998876422234567777776531 135788777663
No 483
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=44.47 E-value=1.1e+02 Score=21.71 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 44 RQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 44 ~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
++.-.++..|+.++... ++.++|+-|..
T Consensus 45 ~~~tpe~~~W~~e~k~~---gi~v~vvSNn~ 72 (175)
T COG2179 45 PDATPELRAWLAELKEA---GIKVVVVSNNK 72 (175)
T ss_pred CCCCHHHHHHHHHHHhc---CCEEEEEeCCC
Confidence 44456788999888654 56677776643
No 484
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=43.43 E-value=1.5e+02 Score=22.91 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=49.3
Q ss_pred cCEEEEEEEEeCCCh--hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC---CCc-
Q 031238 4 EGKTVKAQIWDTAGQ--ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS---DLN- 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~--~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~---Dl~- 77 (163)
+.....+-++|||.. +.+-. .-.+++..++.|+|-- -+..++.+++.-....++ .++|++-++-.. +..
T Consensus 153 dwg~lDyLviDtPPGtsDehls-~~~~~~~~~gAviVTT-PQ~vAl~Dv~K~i~fc~K---~~I~ilGvVENMs~f~Cp~ 227 (300)
T KOG3022|consen 153 DWGELDYLVIDTPPGTSDEHLS-LVQFLRESDGAVIVTT-PQEVALQDVRKEIDFCRK---AGIPILGVVENMSGFVCPK 227 (300)
T ss_pred CCCCcCEEEEeCCCCCChhhhh-eeecccccCceEEEeC-chhhhhHHHHhhhhhhhh---cCCceEEEEeccccccCCC
Confidence 445567788999753 33333 3345666688777632 244566666655554433 368876544332 111
Q ss_pred -c-c-ccCCHHHHHHHHHHcCCcEE
Q 031238 78 -H-L-RAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 78 -~-~-~~~~~~~~~~~~~~~~~~~~ 99 (163)
. . ......-++.+++..|++++
T Consensus 228 C~~~~~iF~~gGg~~l~~~~glp~L 252 (300)
T KOG3022|consen 228 CGHSTNIFGSGGGERLAEELGLPLL 252 (300)
T ss_pred CCCcceeccCccHHHHHHHcCCCeE
Confidence 1 1 11222345778888887654
No 485
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=42.69 E-value=28 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=24.3
Q ss_pred EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC--hhHHHHHHH
Q 031238 10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITK--RQTFDNVLR 52 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~--~~s~~~~~~ 52 (163)
|.+||.-|+..-.......-.++-+++++++.+. ...++++..
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~~~~~~~~i~~Ir~ 82 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPDTPAAEARIEAIRE 82 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCCChHHHHHHHHHHH
Confidence 6789999987653333333345667777775432 233444543
No 486
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.52 E-value=72 Score=20.44 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=26.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 31 GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
++|++.+ +.+....+..+..+...+++....++++++-|.-.
T Consensus 50 ~pdvV~i--S~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 50 DADAIGL--SGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 4565555 44555567777888888877643256666666544
No 487
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=41.52 E-value=67 Score=21.79 Aligned_cols=40 Identities=8% Similarity=0.118 Sum_probs=25.2
Q ss_pred hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEE
Q 031238 24 ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMA 70 (163)
Q Consensus 24 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv 70 (163)
..+..+..+|++|.-|- +.-++|-.-+..-.- .++|+|++
T Consensus 68 RT~~li~~aDvvVvrFG-------ekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 68 RTRKLIEKADVVIALFG-------EKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HHHHHHhhCCEEEEEec-------hHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 34567889999999983 234566555543211 36888764
No 488
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=41.30 E-value=36 Score=27.24 Aligned_cols=35 Identities=17% Similarity=-0.096 Sum_probs=25.1
Q ss_pred EEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECC
Q 031238 8 VKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~ 42 (163)
..+++.|.||...-. ...-..++.+|++++|+++.
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 367899999975421 12234578999999999984
No 489
>PRK13660 hypothetical protein; Provisional
Probab=40.64 E-value=1.2e+02 Score=21.60 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=9.3
Q ss_pred hhhhhcCCcEEEEEEECC
Q 031238 25 TSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 25 ~~~~~~~~d~ii~v~d~~ 42 (163)
.+..+.++|++|.+||..
T Consensus 123 n~fmv~~sd~~i~~YD~e 140 (182)
T PRK13660 123 NQFMLEHTDGALLVYDEE 140 (182)
T ss_pred HHHHHHccCeEEEEEcCC
Confidence 334455555555555544
No 490
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=40.59 E-value=56 Score=21.34 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=36.2
Q ss_pred hhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcE
Q 031238 28 YYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSF 98 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
.+..+|.+|++......... ..+..++..+......++++.++++- +......-.......+....|..+
T Consensus 42 ~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~-g~~~~f~~~~~~~~~~l~~~g~~~ 113 (140)
T TIGR01753 42 DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSG-DWGYEFCEAVDDWEERLKEAGATI 113 (140)
T ss_pred HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecC-CCCchhhHHHHHHHHHHHHCCCEE
Confidence 35568998888766442212 34455555554433346778888764 221100112233445555666544
No 491
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=40.47 E-value=41 Score=23.35 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=27.4
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+..+|++|++....+..---.++.|+..+....-.++|+.++.+-
T Consensus 61 ~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v~~~~~g 107 (171)
T TIGR03567 61 AQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVVLPIATG 107 (171)
T ss_pred HHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEEEEEEcC
Confidence 44678999999987765321122344444432211236788877765
No 492
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=39.45 E-value=56 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=25.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcC--------CcEEEEEEECCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRG--------AVGALLVYDITK 43 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~--------~d~ii~v~d~~~ 43 (163)
.+...+.+|.|.-.-..+...|+.+ -|++|-|+|+.+
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH 189 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence 3456788888876555555554443 499999999864
No 493
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.91 E-value=85 Score=23.16 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=37.4
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCC-CeEEEEeeCCCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK--RQTFDNVLRWLRELRDHADSN-IVIMMAGNKSDL 76 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~-~piivv~nK~Dl 76 (163)
..+.+.+.|+|+.. ..+....+.-+|.+++-+.... ...+..+...+..+....... .++.++.|+.|.
T Consensus 118 ~~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~ 189 (259)
T COG1192 118 DDYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDS 189 (259)
T ss_pred cCCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcC
Confidence 35778999999887 3344455666776665554432 122333333333433332222 344567788875
No 494
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.67 E-value=1.2e+02 Score=20.22 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=36.0
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHH---hhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCC
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELR---DHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~---~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 96 (163)
...+..+|++|++-......--..++.++..+. .....++|+.++++--.... ..........+...++.
T Consensus 65 ~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g-~~~~~~~l~~~~~~~~~ 137 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRG-GLRALEQLRQILDYLGM 137 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSST-THHHHHHHHHHHHHTTB
T ss_pred HhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcH-HHHHHHHHHHHHHHCCC
Confidence 345778999999998875422222333333332 11224688877755433211 11123444555555564
No 495
>PRK06242 flavodoxin; Provisional
Probab=38.49 E-value=1.2e+02 Score=20.19 Aligned_cols=67 Identities=9% Similarity=-0.006 Sum_probs=39.9
Q ss_pred hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 28 YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.+.++|++|+........-...+..++..+... .++++++++|---. .... ...+...+...|+.++
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~--~~k~~~~f~t~g~~-~~~~--~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV--SGKKAFIFSTSGLP-FLKY--HKALKKKLKEKGFEIV 106 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh--cCCeEEEEECCCCC-cchH--HHHHHHHHHHCCCEEE
Confidence 356789999988755433334455555554332 36888888885432 1111 4556666777787654
No 496
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=38.12 E-value=27 Score=27.72 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=25.4
Q ss_pred EEEEEEEeCCChhhH----hhhhh---hhhcCCcEEEEEEECC
Q 031238 7 TVKAQIWDTAGQERY----RAITS---AYYRGAVGALLVYDIT 42 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~----~~~~~---~~~~~~d~ii~v~d~~ 42 (163)
...++++|++|.-.. ..+.. ..++.+|+++.|+++.
T Consensus 83 pa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 83 PAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred eeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 467899999997542 22222 3367899999999873
No 497
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=37.95 E-value=52 Score=23.53 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=27.4
Q ss_pred hhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 27 AYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+..+|++|++....+. ..+....+|+. ...-.++|++++++-
T Consensus 62 ~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~---~~~l~~K~v~iiat~ 108 (191)
T PRK10569 62 EQLAQADGLIVATPVYKASFSGALKTLLDLLP---ERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHCCEEEEECCccCCCCCHHHHHHHHhCC---hhhhCCCEEEEEEec
Confidence 447789999999887653 23333334432 111246788888885
No 498
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=37.92 E-value=31 Score=26.29 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=25.8
Q ss_pred CCeEEEEeeCCC--CcccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238 64 NIVIMMAGNKSD--LNHLRAVTEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 64 ~~piivv~nK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
.+|+++++|+.| +..... .......++...+..++.+||.-
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~-~~~~~~~~~~~~~~~~i~~sa~~ 237 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNN-KVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred cCCceeecccCHHHhccccH-HHHHHHHHHhcCCCeEEEeeHHH
Confidence 489999999988 321111 12333444555677899999854
No 499
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=37.55 E-value=38 Score=19.58 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=16.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 031238 102 SALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 102 Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+|++|-|++|+++..++..+..
T Consensus 44 tAknGgNvKEvme~~lr~~l~~ 65 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLKS 65 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHH
Confidence 7889999999999887765543
No 500
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=37.50 E-value=1.2e+02 Score=24.48 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH---HHHHHHHHcCCcEEEeccCCCCC
Q 031238 53 WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE---DGHSLAEKEGLSFLETSALEATN 108 (163)
Q Consensus 53 ~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~ 108 (163)
+-+-+......++|+|+..--.++...++++.+ ...+++++++++++.-++...+|
T Consensus 174 Le~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaEN 232 (471)
T COG3033 174 LERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAEN 232 (471)
T ss_pred HHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhh
Confidence 333344444567998876655666666777754 45678899999999988887776
Done!