Query 031238
Match_columns 163
No_of_seqs 110 out of 1459
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.5E-33 2.9E-37 201.1 14.3 124 2-125 56-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.9 2.5E-26 8.6E-31 164.7 18.2 127 2-128 51-177 (206)
3 2bov_A RAla, RAS-related prote 99.9 1.8E-26 6.1E-31 165.0 17.1 123 2-124 56-179 (206)
4 3cpj_B GTP-binding protein YPT 99.9 2.2E-26 7.7E-31 167.3 13.1 129 2-130 56-184 (223)
5 2fu5_C RAS-related protein RAB 99.9 3.5E-25 1.2E-29 155.7 16.1 124 2-125 51-174 (183)
6 2hup_A RAS-related protein RAB 99.9 7.5E-25 2.6E-29 156.9 15.9 122 2-123 72-194 (201)
7 2a5j_A RAS-related protein RAB 99.9 1.5E-24 5.2E-29 153.8 16.5 123 2-124 64-186 (191)
8 2ew1_A RAS-related protein RAB 99.9 1.2E-24 4.3E-29 156.1 15.8 123 2-124 69-191 (201)
9 1vg8_A RAS-related protein RAB 99.9 9E-25 3.1E-29 156.4 14.8 124 3-127 52-180 (207)
10 3tw8_B RAS-related protein RAB 99.9 2.2E-24 7.4E-29 150.9 16.4 125 2-127 52-176 (181)
11 3tkl_A RAS-related protein RAB 99.9 2.1E-24 7.2E-29 153.1 16.4 123 2-124 59-181 (196)
12 2bme_A RAB4A, RAS-related prot 99.9 1.5E-24 5.3E-29 152.6 15.3 125 2-126 53-177 (186)
13 4dsu_A GTPase KRAS, isoform 2B 99.9 4.2E-24 1.4E-28 150.5 17.4 124 2-126 46-170 (189)
14 3q72_A GTP-binding protein RAD 99.9 1.6E-24 5.6E-29 149.8 15.0 122 2-123 43-165 (166)
15 2o52_A RAS-related protein RAB 99.9 2E-24 6.8E-29 154.5 15.3 124 2-125 68-191 (200)
16 2nzj_A GTP-binding protein REM 99.9 3.3E-24 1.1E-28 149.3 15.9 123 2-124 46-171 (175)
17 1z0f_A RAB14, member RAS oncog 99.9 3.3E-24 1.1E-28 149.7 15.5 120 2-121 58-177 (179)
18 2yc2_C IFT27, small RAB-relate 99.9 3.5E-24 1.2E-28 153.2 15.9 127 3-129 66-199 (208)
19 2efe_B Small GTP-binding prote 99.9 3.4E-24 1.2E-28 150.1 15.4 120 3-122 56-175 (181)
20 3q85_A GTP-binding protein REM 99.9 2.1E-24 7.1E-29 149.7 14.1 121 2-122 45-167 (169)
21 3cbq_A GTP-binding protein REM 99.9 2.4E-24 8.1E-29 153.8 14.6 121 2-122 66-188 (195)
22 2g6b_A RAS-related protein RAB 99.9 3.3E-24 1.1E-28 150.1 15.0 121 2-122 54-174 (180)
23 1zbd_A Rabphilin-3A; G protein 99.9 6.2E-24 2.1E-28 151.8 16.5 124 3-126 52-175 (203)
24 2gf9_A RAS-related protein RAB 99.9 4.5E-24 1.5E-28 151.0 15.4 121 3-123 66-186 (189)
25 3kkq_A RAS-related protein M-R 99.9 5.1E-24 1.8E-28 149.7 15.5 121 2-122 60-182 (183)
26 3dz8_A RAS-related protein RAB 99.9 1.2E-24 4.2E-29 154.3 12.4 121 3-123 67-187 (191)
27 2g3y_A GTP-binding protein GEM 99.9 5.5E-24 1.9E-28 154.0 15.7 122 2-123 81-204 (211)
28 1z08_A RAS-related protein RAB 99.9 2.5E-24 8.4E-29 149.3 13.4 120 2-121 49-168 (170)
29 2oil_A CATX-8, RAS-related pro 99.9 5.2E-24 1.8E-28 151.1 15.1 122 3-124 69-190 (193)
30 1r2q_A RAS-related protein RAB 99.9 5.6E-24 1.9E-28 147.2 14.8 119 2-120 49-167 (170)
31 2il1_A RAB12; G-protein, GDP, 99.9 6.3E-24 2.2E-28 150.9 14.5 121 2-122 69-190 (192)
32 3t5g_A GTP-binding protein RHE 99.9 3.5E-24 1.2E-28 150.3 13.0 122 2-123 48-170 (181)
33 3ihw_A Centg3; RAS, centaurin, 99.9 9E-24 3.1E-28 149.4 15.0 117 2-123 61-181 (184)
34 1u8z_A RAS-related protein RAL 99.9 8.6E-24 2.9E-28 145.8 14.6 120 2-121 46-166 (168)
35 1z0j_A RAB-22, RAS-related pro 99.9 1.8E-23 6.2E-28 144.8 15.9 119 2-120 49-167 (170)
36 2a9k_A RAS-related protein RAL 99.9 1.2E-23 4.2E-28 147.7 15.2 123 2-124 60-183 (187)
37 2gf0_A GTP-binding protein DI- 99.9 1.2E-24 4.2E-29 154.7 10.1 118 3-121 51-170 (199)
38 2j0v_A RAC-like GTP-binding pr 99.9 7.5E-25 2.6E-29 157.7 9.0 122 2-124 51-182 (212)
39 1g16_A RAS-related protein SEC 99.9 7.4E-24 2.5E-28 146.7 13.7 119 3-122 47-165 (170)
40 1ek0_A Protein (GTP-binding pr 99.9 9.5E-24 3.2E-28 146.0 14.2 119 2-120 46-167 (170)
41 2q3h_A RAS homolog gene family 99.9 1.2E-23 4E-28 150.1 15.0 122 2-124 62-197 (201)
42 2fn4_A P23, RAS-related protei 99.9 1E-23 3.6E-28 147.4 14.3 122 2-123 51-173 (181)
43 3q3j_B RHO-related GTP-binding 99.9 3.6E-24 1.2E-28 154.9 12.2 122 2-124 69-205 (214)
44 3c5c_A RAS-like protein 12; GD 99.9 4.8E-24 1.7E-28 151.0 12.5 119 2-121 63-185 (187)
45 2iwr_A Centaurin gamma 1; ANK 99.9 3E-23 1E-27 145.2 16.0 120 2-126 48-173 (178)
46 3reg_A RHO-like small GTPase; 99.9 1.9E-23 6.5E-28 148.4 15.1 120 2-122 65-188 (194)
47 2y8e_A RAB-protein 6, GH09086P 99.9 9.2E-24 3.1E-28 147.4 13.1 120 2-121 57-176 (179)
48 2f7s_A C25KG, RAS-related prot 99.9 1.6E-23 5.6E-28 151.2 14.6 118 7-124 83-201 (217)
49 2fg5_A RAB-22B, RAS-related pr 99.9 1.1E-23 3.7E-28 149.6 13.3 119 3-121 67-185 (192)
50 1c1y_A RAS-related protein RAP 99.9 1.2E-23 4.2E-28 145.2 13.2 118 3-120 46-165 (167)
51 3oes_A GTPase rhebl1; small GT 99.9 3.8E-24 1.3E-28 153.0 10.9 121 3-123 67-188 (201)
52 3bc1_A RAS-related protein RAB 99.9 5.3E-23 1.8E-27 145.2 16.7 119 6-124 68-187 (195)
53 2hxs_A RAB-26, RAS-related pro 99.9 1.9E-23 6.6E-28 145.9 14.3 117 6-122 54-173 (178)
54 2atx_A Small GTP binding prote 99.9 2.1E-23 7.1E-28 148.1 14.6 119 2-121 60-192 (194)
55 3cph_A RAS-related protein SEC 99.9 1.4E-23 4.8E-28 150.8 13.9 122 2-124 63-184 (213)
56 1z2a_A RAS-related protein RAB 99.9 1.4E-23 4.7E-28 145.1 13.1 119 2-121 48-166 (168)
57 1z06_A RAS-related protein RAB 99.9 2.8E-23 9.6E-28 146.9 14.9 120 2-121 63-187 (189)
58 1kao_A RAP2A; GTP-binding prot 99.9 1.7E-23 5.7E-28 144.3 13.2 120 2-121 45-165 (167)
59 2p5s_A RAS and EF-hand domain 99.9 1.7E-23 5.7E-28 149.4 13.6 120 2-121 71-196 (199)
60 2atv_A RERG, RAS-like estrogen 99.9 2.5E-23 8.5E-28 148.1 14.2 121 2-123 70-192 (196)
61 2cjw_A GTP-binding protein GEM 99.9 7.4E-23 2.5E-27 145.7 16.5 124 2-125 50-175 (192)
62 3t1o_A Gliding protein MGLA; G 99.9 1.4E-23 4.8E-28 148.7 12.2 120 2-124 68-194 (198)
63 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.8E-23 2.3E-27 143.0 15.4 120 2-122 50-174 (177)
64 3con_A GTPase NRAS; structural 99.9 1.4E-22 4.8E-27 143.2 15.9 122 2-124 63-185 (190)
65 1x3s_A RAS-related protein RAB 99.9 1E-22 3.6E-27 144.1 15.1 120 2-122 58-178 (195)
66 2j1l_A RHO-related GTP-binding 99.9 4.1E-23 1.4E-27 149.2 13.0 120 2-122 76-209 (214)
67 1mh1_A RAC1; GTP-binding, GTPa 99.9 6.9E-23 2.3E-27 143.9 13.7 119 2-121 47-179 (186)
68 1m7b_A RND3/RHOE small GTP-bin 99.9 3E-23 1E-27 146.3 11.8 119 2-121 49-182 (184)
69 2gco_A H9, RHO-related GTP-bin 99.9 1.1E-22 3.7E-27 145.5 14.9 120 2-122 67-200 (201)
70 3bwd_D RAC-like GTP-binding pr 99.9 2.4E-23 8.1E-28 145.9 10.4 118 3-121 51-180 (182)
71 3clv_A RAB5 protein, putative; 99.9 3.1E-22 1.1E-26 142.1 16.2 114 8-124 93-206 (208)
72 1gwn_A RHO-related GTP-binding 99.9 5.5E-23 1.9E-27 147.9 12.3 119 3-122 71-204 (205)
73 1ky3_A GTP-binding protein YPT 99.9 1.2E-22 4.1E-27 142.0 13.6 119 5-123 55-179 (182)
74 2ce2_X GTPase HRAS; signaling 99.9 3.6E-22 1.2E-26 137.3 15.0 119 2-121 45-164 (166)
75 2erx_A GTP-binding protein DI- 99.9 8.3E-23 2.8E-27 141.5 11.7 118 3-120 46-165 (172)
76 2fv8_A H6, RHO-related GTP-bin 99.9 3.4E-22 1.2E-26 143.5 14.9 120 2-122 67-200 (207)
77 4djt_A GTP-binding nuclear pro 99.9 1.2E-22 4.2E-27 146.6 12.5 119 5-123 58-176 (218)
78 3l0i_B RAS-related protein RAB 99.9 3.7E-24 1.3E-28 152.8 2.9 120 2-121 76-195 (199)
79 4gzl_A RAS-related C3 botulinu 99.9 1.4E-22 4.6E-27 145.5 11.0 118 2-120 72-203 (204)
80 4bas_A ADP-ribosylation factor 99.9 1.3E-22 4.5E-27 144.1 9.3 118 4-123 59-190 (199)
81 1r8s_A ADP-ribosylation factor 99.9 6.9E-23 2.4E-27 141.3 7.6 117 4-122 40-162 (164)
82 1f6b_A SAR1; gtpases, N-termin 99.9 6.2E-22 2.1E-26 141.5 12.0 110 8-119 69-196 (198)
83 3gj0_A GTP-binding nuclear pro 99.9 4.7E-22 1.6E-26 144.0 10.6 118 2-122 58-175 (221)
84 1m2o_B GTP-binding protein SAR 99.9 1.2E-21 4E-26 139.1 12.0 110 8-119 67-189 (190)
85 2f9l_A RAB11B, member RAS onco 99.9 1.2E-20 4E-25 134.7 15.5 124 2-125 48-171 (199)
86 2wkq_A NPH1-1, RAS-related C3 99.9 4.5E-21 1.5E-25 146.2 13.7 120 2-122 197-330 (332)
87 1upt_A ARL1, ADP-ribosylation 99.9 1.6E-21 5.4E-26 135.2 9.6 113 7-121 50-168 (171)
88 2b6h_A ADP-ribosylation factor 99.9 4.8E-22 1.7E-26 141.3 6.7 114 6-121 71-190 (192)
89 3llu_A RAS-related GTP-binding 99.9 7.8E-22 2.7E-26 140.5 7.7 114 5-120 66-195 (196)
90 2h57_A ADP-ribosylation factor 99.9 7.3E-21 2.5E-25 134.6 12.3 113 8-122 67-187 (190)
91 1zj6_A ADP-ribosylation factor 99.9 1.8E-20 6.1E-25 132.2 13.7 113 8-122 60-178 (187)
92 1fzq_A ADP-ribosylation factor 99.9 9.7E-21 3.3E-25 133.3 12.1 114 7-122 59-178 (181)
93 2h17_A ADP-ribosylation factor 99.8 1E-20 3.6E-25 132.9 11.8 110 8-119 65-180 (181)
94 1ksh_A ARF-like protein 2; sma 99.8 2.5E-20 8.6E-25 131.2 13.7 114 7-122 61-180 (186)
95 3th5_A RAS-related C3 botulinu 99.8 5.8E-23 2E-27 147.0 0.0 118 2-120 72-203 (204)
96 2x77_A ADP-ribosylation factor 99.8 9.7E-22 3.3E-26 138.9 5.5 114 7-122 65-184 (189)
97 1cip_A Protein (guanine nucleo 99.8 1.8E-21 6E-26 150.6 7.2 118 7-124 192-346 (353)
98 1zd9_A ADP-ribosylation factor 99.8 1.1E-20 3.6E-25 133.7 10.5 115 6-122 65-185 (188)
99 2xtz_A Guanine nucleotide-bind 99.8 6E-21 2.1E-25 147.6 8.7 120 6-125 181-348 (354)
100 2zej_A Dardarin, leucine-rich 99.8 3.1E-21 1.1E-25 136.1 6.2 117 5-122 53-178 (184)
101 1moz_A ARL1, ADP-ribosylation 99.8 6.6E-20 2.3E-24 128.5 11.8 113 8-122 62-180 (183)
102 3c5h_A Glucocorticoid receptor 99.8 1.5E-20 5.1E-25 139.5 6.8 116 3-120 90-253 (255)
103 1azs_C GS-alpha; complex (lyas 99.8 5.8E-20 2E-24 143.9 10.4 120 7-126 216-389 (402)
104 3r7w_B Gtpase2, GTP-binding pr 99.8 3.6E-21 1.2E-25 146.8 3.1 118 7-126 45-178 (331)
105 1zcb_A G alpha I/13; GTP-bindi 99.8 2.1E-20 7E-25 145.0 7.3 119 7-125 200-356 (362)
106 3ohm_A Guanine nucleotide-bind 99.8 2E-20 7E-25 143.0 6.1 119 6-124 165-320 (327)
107 1oix_A RAS-related protein RAB 99.8 8.8E-19 3E-23 124.4 13.8 119 2-120 72-190 (191)
108 3o47_A ADP-ribosylation factor 99.8 1.7E-20 5.7E-25 144.0 5.2 117 4-122 205-327 (329)
109 3lvq_E ARF-GAP with SH3 domain 99.8 3.3E-20 1.1E-24 149.2 6.1 117 4-122 362-484 (497)
110 2qu8_A Putative nucleolar GTP- 99.8 2.1E-18 7.3E-23 125.5 14.9 119 8-128 76-211 (228)
111 2fh5_B SR-beta, signal recogni 99.8 8.3E-20 2.8E-24 131.4 6.3 113 7-119 53-213 (214)
112 3r7w_A Gtpase1, GTP-binding pr 99.8 2.9E-19 9.8E-24 135.9 8.9 115 7-122 51-181 (307)
113 4fid_A G protein alpha subunit 99.8 3.3E-19 1.1E-23 136.9 8.2 122 4-126 157-331 (340)
114 2wji_A Ferrous iron transport 99.8 2.3E-18 7.9E-23 119.3 8.4 106 8-120 50-163 (165)
115 2cxx_A Probable GTP-binding pr 99.7 1.2E-17 4.1E-22 117.4 9.3 111 9-122 45-184 (190)
116 1u0l_A Probable GTPase ENGC; p 99.7 8.8E-18 3E-22 127.4 8.1 103 9-118 64-169 (301)
117 3dpu_A RAB family protein; roc 99.7 5.6E-18 1.9E-22 137.5 7.2 114 5-122 95-208 (535)
118 2dyk_A GTP-binding protein; GT 99.7 2.1E-17 7.2E-22 113.2 7.2 103 9-120 50-160 (161)
119 1svi_A GTP-binding protein YSX 99.7 6.7E-17 2.3E-21 114.2 9.9 108 9-120 70-193 (195)
120 2lkc_A Translation initiation 99.7 8.2E-17 2.8E-21 112.0 9.4 105 8-122 55-171 (178)
121 3iev_A GTP-binding protein ERA 99.7 1.8E-16 6.3E-21 120.5 11.9 111 7-120 58-180 (308)
122 2gj8_A MNME, tRNA modification 99.7 7.2E-18 2.5E-22 117.8 3.5 105 9-121 53-165 (172)
123 2wjg_A FEOB, ferrous iron tran 99.7 2.4E-17 8.1E-22 115.9 6.0 108 8-122 54-169 (188)
124 3a1s_A Iron(II) transport prot 99.7 9.6E-17 3.3E-21 119.2 7.7 108 7-121 51-166 (258)
125 3pqc_A Probable GTP-binding pr 99.7 5.5E-16 1.9E-20 109.2 10.5 107 9-121 69-193 (195)
126 3b1v_A Ferrous iron uptake tra 99.7 8.8E-17 3E-21 120.3 5.8 107 7-120 48-162 (272)
127 4dcu_A GTP-binding protein ENG 99.6 6.4E-16 2.2E-20 123.2 10.4 111 9-123 244-370 (456)
128 3cb4_D GTP-binding protein LEP 99.6 1.4E-15 4.8E-20 124.6 12.4 112 4-121 67-181 (599)
129 2ywe_A GTP-binding protein LEP 99.6 2.3E-15 7.8E-20 123.3 12.5 112 4-121 69-183 (600)
130 3iby_A Ferrous iron transport 99.6 2E-16 6.7E-21 117.4 5.1 104 9-119 49-164 (256)
131 1nrj_B SR-beta, signal recogni 99.6 1.8E-16 6.2E-21 114.1 4.4 101 8-108 55-170 (218)
132 4dhe_A Probable GTP-binding pr 99.6 1.9E-15 6.5E-20 109.0 9.5 112 8-123 79-212 (223)
133 2e87_A Hypothetical protein PH 99.6 6.7E-15 2.3E-19 113.9 12.7 113 8-123 214-337 (357)
134 3sjy_A Translation initiation 99.6 3.7E-15 1.3E-19 117.1 11.1 112 7-120 74-190 (403)
135 2hjg_A GTP-binding protein ENG 99.6 2E-15 6.9E-20 119.7 9.3 111 9-123 224-350 (436)
136 3gee_A MNME, tRNA modification 99.6 1.9E-15 6.5E-20 121.0 8.1 109 8-121 281-397 (476)
137 1lnz_A SPO0B-associated GTP-bi 99.6 2.8E-15 9.5E-20 115.5 8.0 109 8-120 206-328 (342)
138 3i8s_A Ferrous iron transport 99.6 5.7E-16 2E-20 115.9 3.3 106 8-120 50-167 (274)
139 1s0u_A EIF-2-gamma, translatio 99.6 2.1E-14 7.1E-19 113.0 12.2 108 7-120 80-196 (408)
140 3qq5_A Small GTP-binding prote 99.6 1.6E-15 5.4E-20 119.8 5.5 104 9-120 84-194 (423)
141 3k53_A Ferrous iron transport 99.6 2.7E-15 9.2E-20 112.0 6.1 107 9-121 51-165 (271)
142 2yv5_A YJEQ protein; hydrolase 99.6 4.8E-15 1.6E-19 112.4 7.5 111 4-117 46-164 (302)
143 1wf3_A GTP-binding protein; GT 99.6 3.4E-15 1.2E-19 113.2 5.9 107 7-120 54-171 (301)
144 1kk1_A EIF2gamma; initiation o 99.5 4.5E-14 1.5E-18 111.2 10.3 108 7-120 82-198 (410)
145 1xzp_A Probable tRNA modificat 99.5 6.3E-14 2.2E-18 112.3 11.3 106 8-122 291-405 (482)
146 1mky_A Probable GTP-binding pr 99.5 8.7E-14 3E-18 110.4 11.5 104 9-122 50-166 (439)
147 1wb1_A Translation elongation 99.5 1E-13 3.4E-18 111.3 11.0 107 8-121 73-188 (482)
148 3p26_A Elongation factor 1 alp 99.5 4.7E-14 1.6E-18 113.2 9.0 107 4-112 107-228 (483)
149 3tr5_A RF-3, peptide chain rel 99.5 6.8E-14 2.3E-18 113.3 10.0 69 6-78 80-148 (528)
150 1g7s_A Translation initiation 99.5 3.3E-13 1.1E-17 110.6 12.5 107 9-122 71-218 (594)
151 2c78_A Elongation factor TU-A; 99.5 2.4E-14 8.2E-19 112.5 5.4 101 4-108 71-180 (405)
152 1zun_B Sulfate adenylate trans 99.5 4E-14 1.4E-18 112.2 6.6 107 6-115 102-217 (434)
153 3j2k_7 ERF3, eukaryotic polype 99.5 7.5E-14 2.6E-18 110.8 8.2 107 5-114 92-217 (439)
154 1jny_A EF-1-alpha, elongation 99.5 9E-15 3.1E-19 116.0 2.8 110 4-114 80-205 (435)
155 2elf_A Protein translation elo 99.5 9.4E-14 3.2E-18 108.0 8.0 112 6-123 58-181 (370)
156 1d2e_A Elongation factor TU (E 99.5 7.8E-14 2.7E-18 109.4 7.0 112 5-120 63-193 (397)
157 3l82_B F-box only protein 4; T 99.5 7E-14 2.4E-18 100.0 5.9 104 15-121 109-222 (227)
158 3geh_A MNME, tRNA modification 99.5 1.5E-13 5.1E-18 109.7 8.0 105 8-122 272-384 (462)
159 1ega_A Protein (GTP-binding pr 99.4 1.2E-13 4.1E-18 104.6 6.4 109 7-120 55-173 (301)
160 2qtf_A Protein HFLX, GTP-bindi 99.4 2.1E-12 7.2E-17 100.2 12.9 117 3-122 223-354 (364)
161 1r5b_A Eukaryotic peptide chai 99.4 2.1E-14 7.2E-19 114.8 1.6 108 7-114 120-244 (467)
162 2hjg_A GTP-binding protein ENG 99.4 1.2E-13 4E-18 109.6 5.9 105 8-121 51-164 (436)
163 3avx_A Elongation factor TS, e 99.4 3E-13 1E-17 116.7 7.7 112 4-119 355-483 (1289)
164 1mky_A Probable GTP-binding pr 99.4 2.8E-12 9.6E-17 101.7 12.2 115 3-123 225-356 (439)
165 3izy_P Translation initiation 99.4 3.7E-14 1.3E-18 114.8 1.0 108 9-120 53-166 (537)
166 1f60_A Elongation factor EEF1A 99.4 1.3E-13 4.5E-18 110.0 3.7 106 4-112 81-202 (458)
167 2qag_A Septin-2, protein NEDD5 99.4 1.1E-13 3.7E-18 107.4 1.7 115 4-123 91-234 (361)
168 3l2o_B F-box only protein 4; s 99.4 1.4E-12 4.9E-17 97.4 7.4 105 15-121 194-307 (312)
169 3izq_1 HBS1P, elongation facto 99.4 2.7E-13 9.3E-18 111.5 3.9 107 4-112 241-362 (611)
170 2ged_A SR-beta, signal recogni 99.3 1.4E-12 4.7E-17 91.8 6.3 74 8-81 91-173 (193)
171 2xtp_A GTPase IMAP family memb 99.3 2.3E-12 7.9E-17 95.2 6.6 113 8-122 71-208 (260)
172 2aka_B Dynamin-1; fusion prote 99.3 1.1E-12 3.6E-17 98.7 4.7 109 8-119 125-250 (299)
173 3lxx_A GTPase IMAP family memb 99.3 1.1E-11 3.8E-16 90.5 10.0 111 8-120 78-212 (239)
174 1zo1_I IF2, translation initia 99.3 2.5E-13 8.5E-18 109.2 1.0 104 8-118 51-163 (501)
175 2dy1_A Elongation factor G; tr 99.3 8.6E-12 2.9E-16 103.6 9.8 67 7-77 73-139 (665)
176 4dcu_A GTP-binding protein ENG 99.3 1.4E-12 4.9E-17 103.9 4.9 104 8-120 71-183 (456)
177 3t5d_A Septin-7; GTP-binding p 99.3 1.5E-12 5.2E-17 97.2 3.2 112 4-119 61-201 (274)
178 2h5e_A Peptide chain release f 99.2 4.3E-11 1.5E-15 97.0 10.5 69 6-78 80-148 (529)
179 2rdo_7 EF-G, elongation factor 99.2 9.9E-11 3.4E-15 97.8 12.4 69 5-77 79-147 (704)
180 1dar_A EF-G, elongation factor 99.2 6.4E-11 2.2E-15 98.7 10.6 68 7-78 76-143 (691)
181 2j69_A Bacterial dynamin-like 99.2 5.7E-11 1.9E-15 99.1 9.9 112 9-123 175-326 (695)
182 3h2y_A GTPase family protein; 99.2 1.1E-10 3.8E-15 90.6 9.8 96 17-119 55-157 (368)
183 3t34_A Dynamin-related protein 99.2 8.8E-12 3E-16 96.5 3.1 105 9-115 137-254 (360)
184 1udx_A The GTP-binding protein 99.2 1.6E-10 5.3E-15 91.1 10.1 112 8-122 205-325 (416)
185 3lxw_A GTPase IMAP family memb 99.2 2E-10 6.8E-15 84.5 10.0 115 8-122 70-208 (247)
186 3mca_A HBS1, elongation factor 99.1 5.7E-13 1.9E-17 109.3 -5.4 102 6-110 253-371 (592)
187 1jwy_B Dynamin A GTPase domain 99.1 1.7E-10 5.9E-15 87.3 7.9 111 8-121 131-261 (315)
188 2xex_A Elongation factor G; GT 99.1 4.8E-10 1.7E-14 93.5 11.2 68 7-78 74-141 (693)
189 1yrb_A ATP(GTP)binding protein 99.1 2.5E-10 8.5E-15 84.1 8.3 109 8-121 109-256 (262)
190 1pui_A ENGB, probable GTP-bind 99.1 4.6E-10 1.6E-14 79.8 8.8 107 9-121 73-198 (210)
191 3ec1_A YQEH GTPase; atnos1, at 99.1 3.4E-10 1.1E-14 88.0 7.6 97 16-119 56-159 (369)
192 3p32_A Probable GTPase RV1496/ 99.1 1.3E-10 4.3E-15 89.9 4.9 104 7-122 171-284 (355)
193 3vqt_A RF-3, peptide chain rel 99.0 1.3E-09 4.5E-14 88.6 10.1 70 4-77 96-165 (548)
194 2wsm_A Hydrogenase expression/ 99.0 3.5E-10 1.2E-14 81.2 6.0 104 8-122 109-214 (221)
195 2qnr_A Septin-2, protein NEDD5 99.0 8.8E-11 3E-15 88.9 1.9 111 5-121 73-213 (301)
196 3def_A T7I23.11 protein; chlor 99.0 7.4E-10 2.5E-14 82.0 5.4 75 8-83 84-170 (262)
197 1wxq_A GTP-binding protein; st 98.9 5.6E-10 1.9E-14 87.5 3.7 49 64-114 214-262 (397)
198 1n0u_A EF-2, elongation factor 98.9 2E-09 6.8E-14 91.6 5.7 70 4-77 94-163 (842)
199 1puj_A YLQF, conserved hypothe 98.8 8.2E-09 2.8E-13 77.4 7.9 100 14-123 5-107 (282)
200 1h65_A Chloroplast outer envel 98.8 3E-09 1E-13 79.1 5.4 76 7-83 86-173 (270)
201 2p67_A LAO/AO transport system 98.8 7.5E-09 2.6E-13 79.5 7.0 103 8-121 149-260 (341)
202 2x2e_A Dynamin-1; nitration, h 98.8 1.1E-09 3.6E-14 84.6 1.9 108 8-118 130-254 (353)
203 2qag_C Septin-7; cell cycle, c 98.8 2.8E-09 9.6E-14 84.0 3.4 108 7-118 87-223 (418)
204 3j25_A Tetracycline resistance 98.8 4.1E-09 1.4E-13 87.2 4.0 70 4-77 63-132 (638)
205 2www_A Methylmalonic aciduria 98.7 7.5E-08 2.6E-12 74.2 10.2 103 8-122 167-279 (349)
206 4fn5_A EF-G 1, elongation fact 98.7 1.3E-07 4.4E-12 79.2 11.0 68 6-77 83-150 (709)
207 3zvr_A Dynamin-1; hydrolase, D 98.5 4.1E-08 1.4E-12 82.3 2.9 105 9-118 151-274 (772)
208 2qpt_A EH domain-containing pr 98.5 5.8E-08 2E-12 79.0 3.7 68 9-79 155-233 (550)
209 1jal_A YCHF protein; nucleotid 98.5 2.4E-06 8.3E-11 66.0 12.4 42 64-105 199-240 (363)
210 2qm8_A GTPase/ATPase; G protei 98.4 9.3E-07 3.2E-11 67.8 7.9 104 7-121 147-260 (337)
211 2dby_A GTP-binding protein; GD 98.4 1.6E-06 5.5E-11 67.2 9.2 52 64-115 201-255 (368)
212 3cnl_A YLQF, putative uncharac 98.4 1.9E-07 6.4E-12 69.2 3.3 93 16-119 5-98 (262)
213 2hf9_A Probable hydrogenase ni 98.4 6E-07 2.1E-11 64.3 5.7 57 65-121 165-223 (226)
214 1t9h_A YLOQ, probable GTPase E 98.3 1.7E-07 5.8E-12 71.0 1.9 90 22-114 77-169 (307)
215 2rcn_A Probable GTPase ENGC; Y 98.0 1.6E-05 5.5E-10 61.4 8.1 84 28-115 127-212 (358)
216 4a9a_A Ribosome-interacting GT 97.5 0.001 3.4E-08 51.7 10.1 105 8-114 119-240 (376)
217 2j37_W Signal recognition part 97.3 0.00027 9.1E-09 56.9 5.0 102 7-119 183-310 (504)
218 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.019 6.6E-07 44.7 10.3 42 64-105 224-269 (392)
219 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0017 5.9E-08 50.7 3.7 36 9-44 87-129 (396)
220 3dm5_A SRP54, signal recogniti 96.0 0.017 5.9E-07 45.7 6.9 91 8-110 183-279 (443)
221 4dzz_A Plasmid partitioning pr 95.7 0.03 1E-06 38.8 6.5 85 8-99 76-162 (206)
222 1j8m_F SRP54, signal recogniti 95.6 0.049 1.7E-06 40.7 7.5 91 8-111 181-280 (297)
223 3ea0_A ATPase, para family; al 94.7 0.24 8E-06 35.2 8.6 86 8-101 119-204 (245)
224 3kl4_A SRP54, signal recogniti 94.6 0.064 2.2E-06 42.3 5.8 90 8-109 180-277 (433)
225 3cwq_A Para family chromosome 94.6 0.14 4.9E-06 35.9 7.3 85 8-99 68-153 (209)
226 3end_A Light-independent proto 94.4 0.36 1.2E-05 35.7 9.4 85 7-100 156-242 (307)
227 2v3c_C SRP54, signal recogniti 93.3 0.72 2.5E-05 36.3 9.7 83 8-101 181-271 (432)
228 2ph1_A Nucleotide-binding prot 93.1 0.27 9.2E-06 35.6 6.5 91 6-100 127-224 (262)
229 1wcv_1 SOJ, segregation protei 92.6 0.33 1.1E-05 34.9 6.4 67 7-76 111-181 (257)
230 3k9g_A PF-32 protein; ssgcid, 92.5 0.36 1.2E-05 34.9 6.5 64 8-75 145-208 (267)
231 1hyq_A MIND, cell division inh 92.1 0.85 2.9E-05 32.7 8.1 83 8-99 111-193 (263)
232 1g3q_A MIND ATPase, cell divis 91.6 0.96 3.3E-05 31.8 7.8 65 8-77 112-176 (237)
233 3q9l_A Septum site-determining 90.8 0.35 1.2E-05 34.6 4.9 67 7-76 113-185 (260)
234 1tq4_A IIGP1, interferon-induc 90.7 2.3 7.9E-05 33.2 9.6 104 9-120 121-251 (413)
235 3ec1_A YQEH GTPase; atnos1, at 89.9 0.02 6.8E-07 44.2 -2.7 90 10-104 214-313 (369)
236 3kjh_A CO dehydrogenase/acetyl 89.7 0.72 2.5E-05 32.5 5.7 64 7-75 131-194 (254)
237 1cp2_A CP2, nitrogenase iron p 89.4 2.8 9.4E-05 30.0 8.7 87 8-99 116-205 (269)
238 2oze_A ORF delta'; para, walke 87.5 1.4 4.9E-05 32.2 6.2 66 8-76 155-224 (298)
239 2afh_E Nitrogenase iron protei 85.2 5.1 0.00018 29.0 8.1 88 7-99 118-208 (289)
240 3h2y_A GTPase family protein; 84.4 0.086 2.9E-06 40.6 -2.0 85 10-99 213-307 (368)
241 2xj4_A MIPZ; replication, cell 83.4 1.6 5.3E-05 32.0 4.6 33 8-42 104-136 (286)
242 3bfv_A CAPA1, CAPB2, membrane 82.5 2.6 8.8E-05 30.7 5.5 64 8-76 192-256 (271)
243 2xxa_A Signal recognition part 79.9 4.6 0.00016 31.7 6.4 64 7-77 183-253 (433)
244 2qag_B Septin-6, protein NEDD5 79.7 0.8 2.7E-05 36.0 2.0 16 63-78 175-190 (427)
245 4a9a_A Ribosome-interacting GT 78.6 6.8 0.00023 30.2 6.8 50 64-120 249-298 (376)
246 3la6_A Tyrosine-protein kinase 76.8 5 0.00017 29.5 5.5 66 8-77 202-267 (286)
247 1byi_A Dethiobiotin synthase; 76.6 16 0.00053 25.1 7.9 87 8-100 109-201 (224)
248 2ffh_A Protein (FFH); SRP54, s 76.0 12 0.00041 29.3 7.7 86 8-103 181-272 (425)
249 3e70_C DPA, signal recognition 75.1 5.9 0.0002 29.8 5.5 91 10-112 214-310 (328)
250 1zu4_A FTSY; GTPase, signal re 71.9 20 0.00068 26.7 7.8 91 8-111 192-295 (320)
251 3sop_A Neuronal-specific septi 71.4 3.4 0.00012 30.1 3.4 67 29-100 109-178 (270)
252 3szr_A Interferon-induced GTP- 70.9 6.6 0.00023 32.2 5.3 66 9-77 148-227 (608)
253 3cio_A ETK, tyrosine-protein k 68.7 9.2 0.00032 28.2 5.3 65 8-77 214-279 (299)
254 1ls1_A Signal recognition part 68.7 17 0.00057 26.7 6.7 92 8-111 181-278 (295)
255 1vma_A Cell division protein F 67.8 17 0.00057 27.0 6.5 91 8-111 187-290 (306)
256 3ez9_A Para; DNA binding, wing 67.7 12 0.00043 28.6 6.0 34 7-42 247-280 (403)
257 2yhs_A FTSY, cell division pro 67.4 9.7 0.00033 30.6 5.4 91 9-112 377-480 (503)
258 1bif_A 6-phosphofructo-2-kinas 66.5 9.6 0.00033 30.0 5.2 62 10-75 89-160 (469)
259 2ark_A Flavodoxin; FMN, struct 61.4 26 0.00088 23.5 6.1 61 8-74 35-98 (188)
260 3ha2_A NADPH-quinone reductase 58.1 36 0.0012 23.0 6.3 64 10-74 31-102 (177)
261 3hyn_A Putative signal transdu 56.4 18 0.00061 25.0 4.4 53 19-75 67-120 (189)
262 3u7r_A NADPH-dependent FMN red 55.9 14 0.00046 25.4 3.9 50 25-74 61-114 (190)
263 4hs4_A Chromate reductase; tri 55.8 16 0.00055 25.1 4.3 71 26-97 68-141 (199)
264 2px0_A Flagellar biosynthesis 55.3 21 0.00072 26.2 5.1 85 8-102 183-273 (296)
265 3pg5_A Uncharacterized protein 52.9 24 0.00081 26.6 5.2 42 7-51 153-194 (361)
266 3k1y_A Oxidoreductase; structu 52.7 16 0.00055 25.1 3.8 71 26-97 80-150 (191)
267 3do6_A Formate--tetrahydrofola 51.7 23 0.00078 28.5 4.9 53 63-118 359-414 (543)
268 3fwy_A Light-independent proto 51.6 71 0.0024 23.6 10.3 83 8-99 164-248 (314)
269 2amj_A Modulator of drug activ 51.4 55 0.0019 22.4 6.6 48 9-57 49-96 (204)
270 2vzf_A NADH-dependent FMN redu 50.2 11 0.00039 25.6 2.8 70 27-98 65-135 (197)
271 2zki_A 199AA long hypothetical 48.7 28 0.00097 23.3 4.6 74 27-100 66-143 (199)
272 3gfs_A FMN-dependent NADPH-azo 47.8 9.8 0.00033 25.3 2.1 72 27-99 59-130 (174)
273 3ez2_A Plasmid partition prote 46.9 20 0.0007 27.3 4.0 33 8-42 245-277 (398)
274 2a5l_A Trp repressor binding p 46.8 34 0.0012 22.9 4.8 73 27-99 67-143 (200)
275 1s2d_A Purine trans deoxyribos 45.3 36 0.0012 22.8 4.6 40 27-71 77-116 (167)
276 3lcm_A SMU.1420, putative oxid 42.6 30 0.001 23.5 4.0 48 27-74 69-129 (196)
277 3pzx_A Formate--tetrahydrofola 42.4 12 0.00041 30.2 2.0 67 52-120 362-428 (557)
278 3svl_A Protein YIEF; E. coli C 42.2 39 0.0013 23.0 4.5 72 26-98 67-141 (193)
279 2fz5_A Flavodoxin; alpha/beta 41.8 26 0.00091 21.7 3.4 68 28-99 43-112 (137)
280 1rtt_A Conserved hypothetical 41.8 15 0.0005 24.8 2.2 71 27-98 68-141 (193)
281 3uc9_A Increased recombination 40.5 7.9 0.00027 27.8 0.7 40 32-75 103-142 (233)
282 3fvw_A Putative NAD(P)H-depend 40.4 29 0.00098 23.6 3.6 70 26-97 62-141 (192)
283 1t0i_A YLR011WP; FMN binding p 39.9 30 0.001 23.1 3.6 70 26-99 79-148 (191)
284 3fkq_A NTRC-like two-domain pr 38.9 30 0.001 26.1 3.8 49 7-58 259-307 (373)
285 1sqs_A Conserved hypothetical 38.5 33 0.0011 24.1 3.7 70 28-99 76-149 (242)
286 3b6i_A Flavoprotein WRBA; flav 37.3 48 0.0017 22.0 4.4 73 27-100 64-140 (198)
287 1rli_A Trp repressor binding p 36.3 30 0.001 22.8 3.1 73 27-99 67-151 (184)
288 1ydg_A Trp repressor binding p 35.9 38 0.0013 23.0 3.7 74 27-100 74-151 (211)
289 2lnd_A De novo designed protei 35.3 69 0.0024 18.8 7.7 61 49-120 39-99 (112)
290 5nul_A Flavodoxin; electron tr 35.1 46 0.0016 20.8 3.7 67 28-98 42-110 (138)
291 2ohf_A Protein OLA1, GTP-bindi 34.6 30 0.001 26.8 3.1 42 64-105 222-267 (396)
292 1f8y_A Nucleoside 2-deoxyribos 33.2 45 0.0016 22.1 3.5 40 27-73 74-115 (157)
293 2q62_A ARSH; alpha/beta, flavo 31.8 38 0.0013 24.2 3.2 70 26-97 93-167 (247)
294 2khz_A C-MYC-responsive protei 31.6 62 0.0021 21.4 4.0 42 27-75 73-114 (165)
295 2f62_A Nucleoside 2-deoxyribos 30.8 60 0.0021 21.6 3.8 42 26-74 62-108 (161)
296 3kcn_A Adenylate cyclase homol 30.8 97 0.0033 19.1 10.3 77 32-126 49-127 (151)
297 2q9u_A A-type flavoprotein; fl 30.2 57 0.0019 24.7 4.1 66 28-97 304-371 (414)
298 2nx2_A Hypothetical protein YP 30.2 78 0.0027 21.4 4.4 22 21-42 120-141 (181)
299 3ehd_A Uncharacterized conserv 30.2 70 0.0024 21.3 4.1 41 27-74 65-107 (162)
300 1ag9_A Flavodoxin; electron tr 29.9 49 0.0017 21.8 3.3 46 28-73 42-88 (175)
301 1d4a_A DT-diaphorase, quinone 29.9 66 0.0022 23.2 4.2 46 29-74 91-149 (273)
302 3gv0_A Transcriptional regulat 29.7 1.1E+02 0.0039 21.4 5.5 59 7-75 40-100 (288)
303 3f2v_A General stress protein 28.7 70 0.0024 21.8 4.0 48 27-74 54-110 (192)
304 3fni_A Putative diflavin flavo 27.3 85 0.0029 20.4 4.1 65 29-99 54-118 (159)
305 1u96_A Cytochrome C oxidase co 26.8 54 0.0019 18.6 2.5 11 153-163 16-26 (69)
306 1ko7_A HPR kinase/phosphatase; 26.4 44 0.0015 25.0 2.8 52 60-118 76-127 (314)
307 3s2y_A Chromate reductase; ura 32.3 14 0.00048 25.4 0.0 48 26-73 68-118 (199)
308 1obo_A Flavodoxin; electron tr 25.9 63 0.0022 20.9 3.3 71 28-98 43-116 (169)
309 3eb2_A Putative dihydrodipicol 25.4 2E+02 0.0068 21.0 7.6 70 29-102 97-166 (300)
310 4ici_A Putative flavoprotein; 25.1 1.1E+02 0.0037 20.2 4.3 44 28-74 84-127 (171)
311 2woj_A ATPase GET3; tail-ancho 24.4 2.2E+02 0.0076 21.2 7.5 41 31-75 234-275 (354)
312 1xky_A Dihydrodipicolinate syn 24.0 92 0.0031 22.9 4.1 39 29-69 105-143 (301)
313 1eiw_A Hypothetical protein MT 23.7 58 0.002 20.3 2.5 44 27-74 34-77 (111)
314 2yxg_A DHDPS, dihydrodipicolin 23.7 94 0.0032 22.6 4.1 38 30-69 94-131 (289)
315 2ehh_A DHDPS, dihydrodipicolin 23.7 92 0.0032 22.7 4.1 39 29-69 93-131 (294)
316 3hly_A Flavodoxin-like domain; 23.5 98 0.0033 20.1 3.9 65 29-99 49-113 (161)
317 3qk7_A Transcriptional regulat 23.4 1E+02 0.0035 21.7 4.3 36 30-75 64-99 (294)
318 3hcw_A Maltose operon transcri 23.3 1.6E+02 0.0054 20.7 5.3 58 8-75 43-102 (295)
319 1w3i_A EDA, 2-keto-3-deoxy glu 23.1 1E+02 0.0035 22.5 4.2 39 29-69 89-128 (293)
320 2ojp_A DHDPS, dihydrodipicolin 22.7 99 0.0034 22.5 4.1 38 30-69 95-132 (292)
321 1o5k_A DHDPS, dihydrodipicolin 22.7 97 0.0033 22.8 4.0 38 30-69 106-143 (306)
322 3cpr_A Dihydrodipicolinate syn 22.4 1E+02 0.0034 22.7 4.1 39 29-69 109-147 (304)
323 2wkj_A N-acetylneuraminate lya 22.4 97 0.0033 22.7 4.0 39 30-69 105-143 (303)
324 3d7n_A Flavodoxin, WRBA-like p 22.3 73 0.0025 21.3 3.1 48 27-74 50-101 (193)
325 1f6k_A N-acetylneuraminate lya 22.0 95 0.0033 22.6 3.8 38 30-69 98-135 (293)
326 3qze_A DHDPS, dihydrodipicolin 21.9 1E+02 0.0035 22.8 4.1 39 29-69 116-154 (314)
327 3daq_A DHDPS, dihydrodipicolin 21.8 97 0.0033 22.6 3.9 38 30-69 96-133 (292)
328 3tem_A Ribosyldihydronicotinam 21.8 1.1E+02 0.0036 21.4 3.9 49 27-75 88-149 (228)
329 3l21_A DHDPS, dihydrodipicolin 21.8 1E+02 0.0035 22.7 4.0 38 30-69 109-146 (304)
330 2v9d_A YAGE; dihydrodipicolini 21.7 1E+02 0.0035 23.1 4.1 41 29-72 124-164 (343)
331 3tak_A DHDPS, dihydrodipicolin 21.6 1.1E+02 0.0037 22.3 4.1 38 30-69 95-132 (291)
332 3flu_A DHDPS, dihydrodipicolin 21.1 1.1E+02 0.0038 22.3 4.1 39 29-69 100-138 (297)
333 2ohh_A Type A flavoprotein FPR 20.9 50 0.0017 24.9 2.2 68 28-99 304-374 (404)
334 3d0c_A Dihydrodipicolinate syn 20.9 91 0.0031 23.0 3.6 41 29-72 104-144 (314)
335 3e96_A Dihydrodipicolinate syn 20.7 84 0.0029 23.2 3.3 44 30-76 105-149 (316)
336 2r8w_A AGR_C_1641P; APC7498, d 20.4 92 0.0031 23.3 3.5 38 30-69 128-165 (332)
337 2l0z_A Glycoprotein G2; zinc-b 20.3 57 0.002 16.4 1.6 14 150-163 13-26 (42)
338 3na8_A Putative dihydrodipicol 20.2 94 0.0032 23.0 3.5 39 29-69 117-155 (315)
339 3l9w_A Glutathione-regulated p 20.2 1.3E+02 0.0044 23.2 4.4 49 27-75 288-345 (413)
340 3k4h_A Putative transcriptiona 20.2 1.8E+02 0.0061 20.2 5.0 58 8-75 44-103 (292)
341 3m5v_A DHDPS, dihydrodipicolin 20.1 2.6E+02 0.0088 20.4 6.7 70 29-102 101-171 (301)
342 1czn_A Flavodoxin; FMN binding 20.0 47 0.0016 21.6 1.7 72 28-99 43-117 (169)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.5e-33 Score=201.07 Aligned_cols=124 Identities=35% Similarity=0.676 Sum_probs=113.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.++||||+|+++|..++..++++++++++|||++++.||+.+..|+..+......++|++|||||+|+.+.+.
T Consensus 56 ~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~ 135 (216)
T 4dkx_A 56 YLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQ 135 (216)
T ss_dssp ECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCC
T ss_pred EecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCc
Confidence 35788899999999999999999999999999999999999999999999999999887767899999999999988899
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
++.++++.+++.+++.|+++||++|.||+++|+.|++.+.....
T Consensus 136 V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 136 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred ccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999988866543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=2.5e-26 Score=164.74 Aligned_cols=127 Identities=46% Similarity=0.787 Sum_probs=114.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 51 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (206)
T 2bcg_Y 51 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV 130 (206)
T ss_dssp EETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred EECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 35778889999999999999999999999999999999999999999999999998877655799999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKA 128 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 128 (163)
+..+++..++...+++++++||++|.|++++|+++.+.+........
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 131 VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 177 (206)
T ss_dssp SCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHH
T ss_pred cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 88888899999999999999999999999999999999987655443
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=165.02 Aligned_cols=123 Identities=34% Similarity=0.555 Sum_probs=112.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 56 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (206)
T 2bov_A 56 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 135 (206)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred EECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence 4577888999999999999999999999999999999999999999999999999887654 479999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+..+++..++...+++++++||++|.|++++|++|++.+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp CSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 88888999999999999999999999999999999999987654
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-26 Score=167.26 Aligned_cols=129 Identities=57% Similarity=0.950 Sum_probs=109.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus 56 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~ 135 (223)
T 3cpj_B 56 EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRA 135 (223)
T ss_dssp EETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCC
T ss_pred EECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 35778889999999999999999999999999999999999999999999999998877555799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALA 130 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~ 130 (163)
+..+++..++...+++++++||+++.|++++|++|++.+.....++.+.
T Consensus 136 v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~ 184 (223)
T 3cpj_B 136 VPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184 (223)
T ss_dssp SCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC------
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccC
Confidence 8888899999999999999999999999999999999988766555443
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.94 E-value=3.5e-25 Score=155.69 Aligned_cols=124 Identities=49% Similarity=0.850 Sum_probs=99.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 51 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (183)
T 2fu5_C 51 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQ 130 (183)
T ss_dssp EETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCC
T ss_pred EECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCc
Confidence 35778899999999999999999999999999999999999999999999999998876555799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+..++++.+++..+++++++||+++.|++++|+++.+.+.....
T Consensus 131 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 131 VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp SCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 88889999999999999999999999999999999998876543
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=156.94 Aligned_cols=122 Identities=52% Similarity=0.799 Sum_probs=111.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 151 (201)
T 2hup_A 72 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE 151 (201)
T ss_dssp EETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccc
Confidence 35777889999999999999999999999999999999999999999999999998877655799999999999987778
Q ss_pred CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+..++++++++..++ +++++||+++.|++++|++|++.+...
T Consensus 152 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 152 VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 888899999999999 999999999999999999999988653
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.93 E-value=1.5e-24 Score=153.82 Aligned_cols=123 Identities=56% Similarity=0.930 Sum_probs=112.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 64 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 64 NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD 143 (191)
T ss_dssp EETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc
Confidence 35778899999999999999999999999999999999999999999999999998877556799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+..++++.+++..+++++++||+++.|++++|++|.+.+.+..
T Consensus 144 v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 144 VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999887643
No 8
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.2e-24 Score=156.11 Aligned_cols=123 Identities=41% Similarity=0.699 Sum_probs=112.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.++||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 148 (201)
T 2ew1_A 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 148 (201)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence 36788899999999999999999999999999999999999999999999999998877656799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+..++++.++...+++++++||++|.|++++|+++++.+....
T Consensus 149 v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 149 VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 8888888899888999999999999999999999999887643
No 9
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.93 E-value=9e-25 Score=156.36 Aligned_cols=124 Identities=40% Similarity=0.614 Sum_probs=107.9
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~ 78 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~- 130 (207)
T 1vg8_A 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE- 130 (207)
T ss_dssp SSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-
T ss_pred ECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-
Confidence 466778999999999999999999999999999999999999999999999988876542 368999999999997
Q ss_pred cccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 79 LRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
.+.+..+++..++. ..+++++++||++|.|++++|++|.+.+......+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 131 NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180 (207)
T ss_dssp CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 45667788888887 56789999999999999999999999988765444
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=150.87 Aligned_cols=125 Identities=42% Similarity=0.727 Sum_probs=113.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... +.|+++|+||+|+...+.
T Consensus 52 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~ 130 (181)
T 3tw8_B 52 EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKV 130 (181)
T ss_dssp EETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCC
T ss_pred EECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcc
Confidence 4577889999999999999999999999999999999999999999999999999877654 799999999999988788
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK 127 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 127 (163)
+..++...++...+++++++||++|.|++++|+++.+.+.....++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 131 VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 8888899999999999999999999999999999999987765443
No 11
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=2.1e-24 Score=153.11 Aligned_cols=123 Identities=48% Similarity=0.805 Sum_probs=113.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus 59 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~ 138 (196)
T 3tkl_A 59 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 138 (196)
T ss_dssp EETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred EECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence 45778899999999999999999999999999999999999999999999999999887666799999999999988788
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+..++.+.++...+++++++||+++.|++++|+++.+.+....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 139 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999999887654
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=1.5e-24 Score=152.62 Aligned_cols=125 Identities=52% Similarity=0.789 Sum_probs=112.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus 53 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (186)
T 2bme_A 53 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE 132 (186)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 35777889999999999999999999999999999999999999999999999888776556799999999999977778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
+..+++..++...+++++++||+++.|++++|+++.+.+......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 133 VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 888888999999999999999999999999999999988765533
No 13
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=4.2e-24 Score=150.47 Aligned_cols=124 Identities=33% Similarity=0.585 Sum_probs=108.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||||++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +
T Consensus 46 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~ 124 (189)
T 4dsu_A 46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-R 124 (189)
T ss_dssp EETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-C
T ss_pred EECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-c
Confidence 4678889999999999999999999999999999999999999999999999998887544 5799999999999964 5
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
.+..+.+..+++..+++++++||++|.|++++|+++.+.+.....+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 125 TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp SSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 6678889999999999999999999999999999999988765533
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.93 E-value=1.6e-24 Score=149.79 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=96.2
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 43 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 43 VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp EETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred EECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 4678889999999999999999999999999999999999999999999999998877543 579999999999998878
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+..++.+.++...+++++++||++|.|++++|+++.+.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 123 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999987653
No 15
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=154.52 Aligned_cols=124 Identities=52% Similarity=0.814 Sum_probs=112.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus 68 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 147 (200)
T 2o52_A 68 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE 147 (200)
T ss_dssp EETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCC
T ss_pred EECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc
Confidence 35777889999999999999999999999999999999999999999999999988776555799999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+...++..+++..+++++++||++|.|++++|++|++.+.....
T Consensus 148 v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 148 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999998876543
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=149.33 Aligned_cols=123 Identities=26% Similarity=0.380 Sum_probs=103.0
Q ss_pred eecCEEEEEEEEeCCChhh--HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcc
Q 031238 2 IVEGKTVKAQIWDTAGQER--YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~--~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~ 78 (163)
.+++..+.+.+|||+|++. +..+...+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+
T Consensus 46 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 46 TVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp EETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred EECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 4678889999999999987 567778889999999999999999999999999988876532 4689999999999987
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+.+..++++.++...+++++++||++|.|++++|++|.+.+....
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 7788888888898888999999999999999999999999886543
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=3.3e-24 Score=149.69 Aligned_cols=120 Identities=52% Similarity=0.870 Sum_probs=109.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 137 (179)
T 1z0f_A 58 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD 137 (179)
T ss_dssp EETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 35678889999999999999999999999999999999999999999999999988877656799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 138 VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999998774
No 18
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=3.5e-24 Score=153.16 Aligned_cols=127 Identities=24% Similarity=0.442 Sum_probs=103.2
Q ss_pred ecCE--EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCc
Q 031238 3 VEGK--TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLN 77 (163)
Q Consensus 3 ~~~~--~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~ 77 (163)
+++. .+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 66 IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp CTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred ECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 3444 78999999999999999999999999999999999999999999999999988765 579999999999997
Q ss_pred c-cccCCHHHHHHHHHHcCCcEEEeccCC-CCCHHHHHHHHHHHHHHHHhHhHH
Q 031238 78 H-LRAVTEEDGHSLAEKEGLSFLETSALE-ATNVEKAFQTILTEIYHIISKKAL 129 (163)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~l~~~~~~~~~~~~~ 129 (163)
. .+.+..+++..+++.++++++++||++ +.|++++|+++.+.+.+...++..
T Consensus 146 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~~~ 199 (208)
T 2yc2_C 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVA 199 (208)
T ss_dssp ----CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHhhHH
Confidence 7 677888899999999999999999999 999999999999998877655543
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=3.4e-24 Score=150.13 Aligned_cols=120 Identities=46% Similarity=0.793 Sum_probs=109.4
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus 56 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 135 (181)
T 2efe_B 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV 135 (181)
T ss_dssp ETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS
T ss_pred ECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC
Confidence 56778899999999999999999999999999999999999999999999999988776557999999999999877788
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++++.+++..+++++++||+++.|++++|++|.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 136 TAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999887644
No 20
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=2.1e-24 Score=149.66 Aligned_cols=121 Identities=26% Similarity=0.376 Sum_probs=104.5
Q ss_pred eecCEEEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.+|||+|++.+.. ++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.
T Consensus 45 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 45 MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124 (169)
T ss_dssp EETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred EECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence 4678889999999999998876 777889999999999999999999999999999887654 47999999999999877
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..++++.+++..+++++++||+++.|++++|+++++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 125 REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999988754
No 21
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=153.80 Aligned_cols=121 Identities=26% Similarity=0.376 Sum_probs=108.5
Q ss_pred eecCEEEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.+|||+|++.+.. ++..+++++|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 66 MVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 4688899999999999987754 778889999999999999999999999999998877653 47999999999999877
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..++++.+++..+++++++||+++.|++++|+++++.+..
T Consensus 146 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 146 REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999999999988754
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.3e-24 Score=150.08 Aligned_cols=121 Identities=48% Similarity=0.805 Sum_probs=102.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus 54 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 133 (180)
T 2g6b_A 54 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV 133 (180)
T ss_dssp EETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc
Confidence 45778889999999999999999999999999999999999999999999999998877655799999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..++++.+++..+++++++||+++.|++++|+++.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 134 VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 88888899999899999999999999999999999988754
No 23
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=6.2e-24 Score=151.81 Aligned_cols=124 Identities=41% Similarity=0.748 Sum_probs=112.4
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 131 (203)
T 1zbd_A 52 RNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV 131 (203)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCS
T ss_pred ECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccccc
Confidence 46778899999999999999999999999999999999999999999999999988776557999999999999877778
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
..+++..+++..+++++++||+++.|++++|++|.+.+.....+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 132 SSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE 175 (203)
T ss_dssp CHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999988775433
No 24
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=4.5e-24 Score=151.03 Aligned_cols=121 Identities=45% Similarity=0.769 Sum_probs=110.4
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus 66 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 145 (189)
T 2gf9_A 66 RHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVV 145 (189)
T ss_dssp ETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred ECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCC
Confidence 46778899999999999999999999999999999999999999999999999988776557999999999999877778
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
..++++.+++..+++++++||+++.|++++|++|.+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 146 PAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp CHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999988654
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=5.1e-24 Score=149.71 Aligned_cols=121 Identities=32% Similarity=0.548 Sum_probs=110.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 60 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139 (183)
T ss_dssp EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred EeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc
Confidence 4578888999999999999999999999999999999999999999999999998876533 578999999999998878
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccC-CCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSAL-EATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~ 122 (163)
.+..++++.+++.++++++++||+ ++.|++++|+++.+.+.+
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 140 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999999999 999999999999988754
No 26
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.2e-24 Score=154.29 Aligned_cols=121 Identities=45% Similarity=0.762 Sum_probs=111.2
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus 67 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 146 (191)
T 3dz8_A 67 RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVV 146 (191)
T ss_dssp ETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred ECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc
Confidence 45667889999999999999999999999999999999999999999999999998876567999999999999887888
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
..++++.++...+++++++||+++.|++++|+++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 147 PTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp CHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999988664
No 27
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5.5e-24 Score=154.04 Aligned_cols=122 Identities=27% Similarity=0.374 Sum_probs=107.0
Q ss_pred eecCEEEEEEEEeCCChhh-HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.+|||+|... +..+...+++.+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.
T Consensus 81 ~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 81 MVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp EETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred EECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence 4688889999999999887 56677788999999999999999999999999988887643 247999999999999877
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+..++++.++..++++++++||++|.|++++|+++++.+...
T Consensus 161 r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 161 REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 78888888888888899999999999999999999999887543
No 28
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=2.5e-24 Score=149.30 Aligned_cols=120 Identities=39% Similarity=0.674 Sum_probs=102.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 49 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 128 (170)
T 1z08_A 49 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH 128 (170)
T ss_dssp ESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC
T ss_pred EECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccc
Confidence 35677889999999999999999999999999999999999999999999999988776555799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 129 VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999998774
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=5.2e-24 Score=151.06 Aligned_cols=122 Identities=63% Similarity=0.977 Sum_probs=110.9
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.||||+|++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+
T Consensus 69 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~ 148 (193)
T 2oil_A 69 LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV 148 (193)
T ss_dssp ETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc
Confidence 46778899999999999999999999999999999999999999999999999988765557999999999999877778
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
..++++.++...+++++++||+++.|++++|++|.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 149 PTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999887654
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=5.6e-24 Score=147.19 Aligned_cols=119 Identities=45% Similarity=0.769 Sum_probs=108.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.
T Consensus 49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1r2q_A 49 CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128 (170)
T ss_dssp EETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc
Confidence 35677889999999999999999999999999999999999999999999999998877555799999999999977777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..+++..++...+++++++||++|.|++++|++|.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 888888889999999999999999999999999998754
No 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=6.3e-24 Score=150.91 Aligned_cols=121 Identities=41% Similarity=0.765 Sum_probs=109.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~ 148 (192)
T 2il1_A 69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 148 (192)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 35778899999999999999999999999999999999999999999999999888777656799999999999987778
Q ss_pred CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..++++.+++.. +++++++||++|.|++++|++|.+.+.+
T Consensus 149 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 149 ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8888888888874 7899999999999999999999988754
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=3.5e-24 Score=150.30 Aligned_cols=122 Identities=34% Similarity=0.493 Sum_probs=109.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+
T Consensus 48 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 48 TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp EETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred EECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 4678889999999999999999999999999999999999999999999999988876644 478999999999998778
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+..++++.+++..+++++++||+++.|++++|+++++.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 128 VISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred eecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999887553
No 33
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=9e-24 Score=149.41 Aligned_cols=117 Identities=18% Similarity=0.388 Sum_probs=104.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCc--c
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLN--H 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~--~ 78 (163)
.+++..+.+.+|||+|++.+. +++++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+. .
T Consensus 61 ~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (184)
T 3ihw_A 61 VVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN 135 (184)
T ss_dssp EETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred EECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 568889999999999998876 78899999999999999999999999999987643 468999999999983 4
Q ss_pred cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+.+..+++..++...+ +.++++||++|.|++++|+++++.+...
T Consensus 136 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 136 PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 57788899999999987 8999999999999999999999988764
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=8.6e-24 Score=145.85 Aligned_cols=120 Identities=34% Similarity=0.581 Sum_probs=106.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 46 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 46 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp EETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 4577888999999999999999999999999999999999999999999999999887655 479999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 126 QVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999998774
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=1.8e-23 Score=144.76 Aligned_cols=119 Identities=45% Similarity=0.737 Sum_probs=108.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.
T Consensus 49 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1z0j_A 49 QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE 128 (170)
T ss_dssp EETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC
T ss_pred EECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc
Confidence 35677889999999999999999999999999999999999999999999999998877556799999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..++...+++..+++++++||+++.|++++|+++.+.+
T Consensus 129 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 129 VMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 888889999999999999999999999999999998765
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=1.2e-23 Score=147.72 Aligned_cols=123 Identities=34% Similarity=0.555 Sum_probs=111.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 60 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 139 (187)
T 2a9k_A 60 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 139 (187)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence 4577888999999999999999999999999999999999999999999999999887755 479999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+..++++.+++.++++++++||+++.|++++|++|.+.+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 140 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 78888999999999999999999999999999999999886543
No 37
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.2e-24 Score=154.67 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=103.9
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~ 80 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +
T Consensus 51 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~ 129 (199)
T 2gf0_A 51 CDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-R 129 (199)
T ss_dssp ETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-C
T ss_pred ECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-c
Confidence 467788999999999999999999999999999999999999999988888877766543 3689999999999965 5
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..+++..++..++++++++||+++.|++++|+++++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 130 EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp SSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 66778888888889999999999999999999999987663
No 38
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=7.5e-25 Score=157.68 Aligned_cols=122 Identities=33% Similarity=0.617 Sum_probs=104.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+.+
T Consensus 51 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 51 AVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDK 129 (212)
T ss_dssp ECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCH
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCc
Confidence 35777889999999999999999999999999999999999999999986 79888877654 78999999999986543
Q ss_pred c--------CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 81 A--------VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
. +..+++..++..+++ +++++||+++.|++++|+++++.+....
T Consensus 130 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 130 GYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred cccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 3 467888889988886 9999999999999999999999887644
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=7.4e-24 Score=146.74 Aligned_cols=119 Identities=48% Similarity=0.867 Sum_probs=107.6
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+
T Consensus 47 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~ 125 (170)
T 1g16_A 47 INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVV 125 (170)
T ss_dssp SSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCS
T ss_pred ECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCcc
Confidence 46677899999999999999999999999999999999999999999999999988776557999999999999 44667
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+++..+++..+++++++||+++.|++++|+++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 126 TADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7888888999999999999999999999999999988864
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=9.5e-24 Score=146.04 Aligned_cols=119 Identities=45% Similarity=0.745 Sum_probs=107.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL-- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~-- 79 (163)
.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...
T Consensus 46 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 46 TINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGG 125 (170)
T ss_dssp EETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC
T ss_pred EECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc
Confidence 357788899999999999999999999999999999999999999999999999988776557999999999998655
Q ss_pred -ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 -RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 126 ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 66778888889998999999999999999999999988654
No 41
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=150.12 Aligned_cols=122 Identities=30% Similarity=0.517 Sum_probs=108.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH-- 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~-- 78 (163)
.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~ 140 (201)
T 2q3h_A 62 SVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDV 140 (201)
T ss_dssp EETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCH
T ss_pred EECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhch
Confidence 35778899999999999999999999999999999999999999999986 79888877655 799999999999865
Q ss_pred ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+.+..+++..+++..++ +++++||+++.|++++|+++++.+....
T Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 256778888899988887 8999999999999999999999887654
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=1e-23 Score=147.37 Aligned_cols=122 Identities=29% Similarity=0.521 Sum_probs=109.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++++..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+
T Consensus 51 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 51 SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR 130 (181)
T ss_dssp EETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 457778899999999999999999999999999999999999999999999998885543 3578999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+..+++..++...+++++++||+++.|++++|++|.+.+...
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 131 QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp CSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999999999888653
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.91 E-value=3.6e-24 Score=154.87 Aligned_cols=122 Identities=25% Similarity=0.466 Sum_probs=107.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHH-HHHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN-VLRWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++. +..|+..+..... +.|+++|+||+|+.+.
T Consensus 69 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~ 147 (214)
T 3q3j_B 69 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDL 147 (214)
T ss_dssp EC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCH
T ss_pred EECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccch
Confidence 356778899999999999999999999999999999999999999998 6899999887764 7999999999999653
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIYHII 124 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~ 124 (163)
+.+..+++..+++.+++ +++++||+++.| ++++|+.+++.+....
T Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred hhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 67889999999999999 999999999998 9999999999886543
No 44
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=151.02 Aligned_cols=119 Identities=33% Similarity=0.478 Sum_probs=104.0
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~ 78 (163)
.+++..+.+.||||+|++.+..+ ..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+
T Consensus 63 ~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 63 TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp EETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred EECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 45788899999999999988775 5789999999999999999999999999999887642 4689999999999987
Q ss_pred cccCCHHHHHHHHHHcCCcEEEecc-CCCCCHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSA-LEATNVEKAFQTILTEIY 121 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~l~~~~~ 121 (163)
.+.+..+++..+++..+++++++|| +++.|++++|+.+++.+.
T Consensus 142 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 7888889999999999999999999 899999999999998764
No 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=3e-23 Score=145.16 Aligned_cols=120 Identities=20% Similarity=0.361 Sum_probs=101.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLN- 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~- 77 (163)
.+++..+.+++|||+|+++ ..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 48 ~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 48 LVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp EETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred EECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4678889999999999976 3578899999999999999999999887666655432 478999999999993
Q ss_pred -ccccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 78 -HLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 78 -~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
..+.+..++++.++... +++++++||++|.|++++|+++.+.+......
T Consensus 123 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 123 SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp TBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence 45677888888888876 68999999999999999999999988775543
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.91 E-value=1.9e-23 Score=148.38 Aligned_cols=120 Identities=27% Similarity=0.527 Sum_probs=107.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.
T Consensus 65 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~ 143 (194)
T 3reg_A 65 KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDG 143 (194)
T ss_dssp EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTT
T ss_pred EECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCC
Confidence 4678889999999999999999999999999999999999999999997 678888776654 6999999999998643
Q ss_pred -ccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 -RAVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..+++..+++..++. ++++||++|.|++++|+++++.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 667889999999999987 9999999999999999999988754
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=9.2e-24 Score=147.40 Aligned_cols=120 Identities=38% Similarity=0.711 Sum_probs=108.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus 57 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 136 (179)
T 2y8e_A 57 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 136 (179)
T ss_dssp EETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC
T ss_pred EECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc
Confidence 35778889999999999999999999999999999999999999999999999988876655799999999999987778
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..++++.++...+++++++||+++.|++++|++|.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 137 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 8888888899989999999999999999999999987653
No 48
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=1.6e-23 Score=151.16 Aligned_cols=118 Identities=45% Similarity=0.747 Sum_probs=107.5
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 78899999999999999999999999999999999999999999999888766543 47999999999999877788888
Q ss_pred HHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 86 DGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+++.+++..+++++++||+++.|++++|++|.+.+....
T Consensus 163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887654
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.1e-23 Score=149.62 Aligned_cols=119 Identities=44% Similarity=0.736 Sum_probs=108.5
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~ 82 (163)
+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+
T Consensus 67 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v 146 (192)
T 2fg5_A 67 CGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREV 146 (192)
T ss_dssp CSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS
T ss_pred eCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc
Confidence 45677899999999999999999999999999999999999999999999999988776557999999999999776778
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
..++++.+++..+++++++||+++.|++++|++|.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 147 PLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp CHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999988664
No 50
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=1.2e-23 Score=145.23 Aligned_cols=118 Identities=32% Similarity=0.537 Sum_probs=106.5
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 46 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1c1y_A 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV 125 (167)
T ss_dssp SSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc
Confidence 467788999999999999999999999999999999999999999999999988877543 4799999999999987777
Q ss_pred CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..++++.+++.. +++++++||++|.|++++|+++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 126 VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 8888899898887 78999999999999999999998876
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=152.99 Aligned_cols=121 Identities=28% Similarity=0.495 Sum_probs=106.0
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~ 81 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.
T Consensus 67 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE 146 (201)
T ss_dssp ----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC
T ss_pred ECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc
Confidence 456778899999999999999999999999999999999999999999999999877643 4689999999999988888
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+..+++..++...+++++++||+++.|++++|++|.+.+...
T Consensus 147 v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 147 VQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp SCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 888999999999999999999999999999999999988654
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=5.3e-23 Score=145.19 Aligned_cols=119 Identities=45% Similarity=0.756 Sum_probs=108.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.||||+|++.+...+..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..
T Consensus 68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 378999999999999999999999999999999999999999999999998887654 5799999999999987777888
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
++++.++...+++++++||+++.|++++|++|.+.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 148 EEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999887644
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=1.9e-23 Score=145.89 Aligned_cols=117 Identities=33% Similarity=0.522 Sum_probs=104.2
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCe-EEEEeeCCCCcccccC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIV-IMMAGNKSDLNHLRAV 82 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iivv~nK~Dl~~~~~~ 82 (163)
..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .+.| +++|+||+|+.+.+.+
T Consensus 54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 133 (178)
T 2hxs_A 54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI 133 (178)
T ss_dssp EEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS
T ss_pred CEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc
Confidence 678999999999999999999999999999999999999999999999988876532 1344 8999999999877778
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+++..+++..+++++++||+++.|++++|++|.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 134 KPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999987754
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.1e-23 Score=148.08 Aligned_cols=119 Identities=29% Similarity=0.509 Sum_probs=106.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 60 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCH
T ss_pred EECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccc
Confidence 34677789999999999999999999999999999999999999999987 78888887654 6899999999999653
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.+..+++..+++.+++ +++++||++|.|++++|+++.+.++
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 46778889999999888 8999999999999999999998765
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-23 Score=150.75 Aligned_cols=122 Identities=46% Similarity=0.835 Sum_probs=109.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+ ..+.
T Consensus 63 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~ 141 (213)
T 3cph_A 63 DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRV 141 (213)
T ss_dssp EETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCC
T ss_pred EECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccc
Confidence 357778899999999999999999999999999999999999999999999999888776557999999999999 4466
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+..+++..+++.++++++++||+++.|++++|++|.+.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 142 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp SCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 7788888899989999999999999999999999999886654
No 56
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.91 E-value=1.4e-23 Score=145.10 Aligned_cols=119 Identities=34% Similarity=0.572 Sum_probs=108.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.
T Consensus 48 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~ 126 (168)
T 1z2a_A 48 QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSC 126 (168)
T ss_dssp EETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCS
T ss_pred EECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccCcccc
Confidence 3567788999999999999999999999999999999999999999999999998877653 689999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 127 IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999998775
No 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=2.8e-23 Score=146.94 Aligned_cols=120 Identities=33% Similarity=0.636 Sum_probs=106.0
Q ss_pred eecCEEEEEEEEeCCChhhHh-hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.||||+|++.+. .++..+++++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus 63 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 63 DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred EECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 357788899999999999998 888999999999999999999999999999999988775 357999999999999877
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCC---CCHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEA---TNVEKAFQTILTEIY 121 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~l~~~~~ 121 (163)
+.+..++++.++...+++++++||+++ .|++++|++|++.+.
T Consensus 143 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 143 IQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred ceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 788888899999999999999999999 999999999987764
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=1.7e-23 Score=144.26 Aligned_cols=120 Identities=29% Similarity=0.511 Sum_probs=108.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+
T Consensus 45 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1kao_A 45 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124 (167)
T ss_dssp EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence 4577888999999999999999999999999999999999999999999999988877643 479999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 125 EVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 88888889999999999999999999999999999988764
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=149.43 Aligned_cols=120 Identities=39% Similarity=0.666 Sum_probs=105.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc----
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN---- 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~---- 77 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 71 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~ 150 (199)
T 2p5s_A 71 IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAA 150 (199)
T ss_dssp EETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHH
T ss_pred EECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence 4577888999999999999999999999999999999999999999999999998877655578999999999985
Q ss_pred --ccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 78 --HLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
..+.+..++++.++...+++++++||+++.|++++|++|++.+.
T Consensus 151 ~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 151 TEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34667788888999999999999999999999999999988764
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.5e-23 Score=148.09 Aligned_cols=121 Identities=34% Similarity=0.518 Sum_probs=108.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++. ...+..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus 70 ~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 148 (196)
T 2atv_A 70 TIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 148 (196)
T ss_dssp EETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred EECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc
Confidence 4577889999999999988 77788899999999999999999999999999988877643 479999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEIYHI 123 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~~ 123 (163)
.+..+++..+++..+++++++||+++. |++++|++|++.+.+.
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp CSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 888899999999999999999999999 9999999999988654
No 61
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=7.4e-23 Score=145.67 Aligned_cols=124 Identities=27% Similarity=0.374 Sum_probs=105.9
Q ss_pred eecCEEEEEEEEeCCChhh-HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238 2 IVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~ 79 (163)
.+++..+.+.+|||+|... +..++..+++.+|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...
T Consensus 50 ~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 50 MVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX 129 (192)
T ss_dssp EETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG
T ss_pred EECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc
Confidence 4688899999999999876 566778889999999999999999999999999888776532 46899999999999777
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+.+..++++.++..++++++++||++|.|++++|+++.+.+.....
T Consensus 130 r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~~ 175 (192)
T 2cjw_A 130 REVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRD 175 (192)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhcc
Confidence 7788888888888888999999999999999999999998865543
No 62
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.91 E-value=1.4e-23 Score=148.68 Aligned_cols=120 Identities=23% Similarity=0.305 Sum_probs=104.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC------ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT------KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+++..+.+++|||+|++.+..++..+++++|++|+|||++ +..++..+..|+..+.... .++|+++|+||+|
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~-~~~piilv~NK~D 146 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL-DDVPIVIQVNKRD 146 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT-TSSCEEEEEECTT
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc-CCCCEEEEEEchh
Confidence 45678899999999999999999999999999999999999 5567777888887774322 4799999999999
Q ss_pred CcccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+.+ .+..++++++++..++ +++++||+++.|++++|++|.+.+.+..
T Consensus 147 l~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 147 LPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp STT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred ccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 964 3678889999999998 9999999999999999999999887754
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.90 E-value=6.8e-23 Score=142.99 Aligned_cols=120 Identities=36% Similarity=0.650 Sum_probs=106.3
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN 77 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~ 77 (163)
.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 50 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 50 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 3577888999999999999999999999999999999999999999999999988876643 478999999999996
Q ss_pred ccccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+.+..+++..+++ ..+++++++||+++.|++++|+++++.+..
T Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 130 -ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp -SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 46677888888887 556899999999999999999999988754
No 64
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=1.4e-22 Score=143.22 Aligned_cols=122 Identities=34% Similarity=0.589 Sum_probs=98.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.. +
T Consensus 63 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~ 141 (190)
T 3con_A 63 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-R 141 (190)
T ss_dssp EETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-C
T ss_pred EECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-c
Confidence 4577888999999999999999999999999999999999999999999999988877654 4689999999999865 5
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
.+..++++++++..+++++++||+++.|++++|++|.+.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 142 TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999886543
No 65
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1e-22 Score=144.09 Aligned_cols=120 Identities=43% Similarity=0.756 Sum_probs=107.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+
T Consensus 58 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~ 136 (195)
T 1x3s_A 58 SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NR 136 (195)
T ss_dssp EETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SC
T ss_pred EECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-cc
Confidence 3577889999999999999999999999999999999999999999999999999877653 478999999999994 35
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+..+++..+++..+++++++||+++.|++++|++|.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 137 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 677888888999999999999999999999999999988864
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=149.17 Aligned_cols=120 Identities=35% Similarity=0.597 Sum_probs=92.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+...
T Consensus 76 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCH
T ss_pred EECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccc
Confidence 45788899999999999999999999999999999999999999999986 78888877654 6899999999998654
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..+++..+++..++ +++++||++|.|++++|+++++.+..
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 155 SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 25677888899999897 99999999999999999999988865
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=6.9e-23 Score=143.90 Aligned_cols=119 Identities=31% Similarity=0.592 Sum_probs=105.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+. .|+..+....+ +.|+++|+||+|+...
T Consensus 47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 47 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 125 (186)
T ss_dssp EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCH
T ss_pred EECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccc
Confidence 45788899999999999999999999999999999999999999999987 78888877655 7899999999998543
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.+..+++..+++..++ +++++||++|.|++++|+++.+.+.
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 46677888889998887 9999999999999999999998774
No 68
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=3e-23 Score=146.32 Aligned_cols=119 Identities=25% Similarity=0.525 Sum_probs=104.8
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+.
T Consensus 49 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~ 127 (184)
T 1m7b_A 49 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDV 127 (184)
T ss_dssp ECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCH
T ss_pred EECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcch
Confidence 3567788999999999999999999999999999999999999999998 688888877654 6899999999999642
Q ss_pred -----------ccCCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEG-LSFLETSAL-EATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~l~~~~~ 121 (163)
+.+..++++.+++.++ .+++++||+ ++.|++++|+.+++.++
T Consensus 128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 5677888999998887 699999998 68999999999998775
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=1.1e-22 Score=145.52 Aligned_cols=120 Identities=29% Similarity=0.537 Sum_probs=105.7
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+...
T Consensus 67 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDE 145 (201)
T ss_dssp EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCH
T ss_pred EECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCc
Confidence 4577889999999999999999999999999999999999999999998 578887776554 6899999999998654
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..+++..+++..++ +++++||+++.|++++|++|.+.+++
T Consensus 146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 45777888889998888 89999999999999999999987753
No 70
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=2.4e-23 Score=145.92 Aligned_cols=118 Identities=31% Similarity=0.596 Sum_probs=97.8
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+.
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp -------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHH
T ss_pred ECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcc
Confidence 5677788999999999999999999999999999999999999999987 78888877654 789999999999865433
Q ss_pred ----------CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 ----------VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..+++..+++..++ +++++||+++.|++++|+++.+.+.
T Consensus 130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 130 FFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467888889988886 9999999999999999999988763
No 71
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.90 E-value=3.1e-22 Score=142.14 Aligned_cols=114 Identities=38% Similarity=0.654 Sum_probs=103.2
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
+.+.||||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+..... .|+++|+||+| ...+.+..+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHHHH
Confidence 8899999999999999999999999999999999999999999999998877644 89999999999 45567788899
Q ss_pred HHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 88 HSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 88 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+.+++..+++++++||+++.|++++|++|.+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887643
No 72
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=5.5e-23 Score=147.86 Aligned_cols=119 Identities=25% Similarity=0.543 Sum_probs=105.0
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH--- 78 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~--- 78 (163)
+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+..
T Consensus 71 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~ 149 (205)
T 1gwn_A 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVS 149 (205)
T ss_dssp SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHH
T ss_pred ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchh
Confidence 467788999999999999999999999999999999999999999998 689888877654 689999999999964
Q ss_pred ---------cccCCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHHH
Q 031238 79 ---------LRAVTEEDGHSLAEKEG-LSFLETSAL-EATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 ---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~l~~~~~~ 122 (163)
.+.+..++++.+++..+ .+++++||+ ++.|++++|+.+++.+++
T Consensus 150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 150 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 25677888999998887 699999998 689999999999988764
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=1.2e-22 Score=142.03 Aligned_cols=119 Identities=36% Similarity=0.619 Sum_probs=94.4
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcc-c
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNH-L 79 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~-~ 79 (163)
+..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. .
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 134 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence 4567899999999999999999999999999999999999999999999988877643 4789999999999953 3
Q ss_pred ccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+..+++..+++ ..+.+++++||++|.|++++|+++.+.+.+.
T Consensus 135 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 135 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5567888888887 4567999999999999999999999888653
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=3.6e-22 Score=137.27 Aligned_cols=119 Identities=34% Similarity=0.615 Sum_probs=106.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +
T Consensus 45 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~ 123 (166)
T 2ce2_X 45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-R 123 (166)
T ss_dssp EETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-C
T ss_pred EECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-c
Confidence 3567888999999999999999999999999999999999999999999999998877654 4699999999999865 5
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+..++.+.+++..+++++++||+++.|++++|+++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 56788888899999999999999999999999999998764
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=8.3e-23 Score=141.52 Aligned_cols=118 Identities=29% Similarity=0.387 Sum_probs=105.0
Q ss_pred ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcccc
Q 031238 3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~ 80 (163)
+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+
T Consensus 46 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 46 CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 125 (172)
T ss_dssp ETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence 467778999999999999999999999999999999999999999988888888876543 368999999999998777
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+...+...++...+++++++||+++.|++++|+++.+.+
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 126 EVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 7888888888888899999999999999999999998754
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.4e-22 Score=143.53 Aligned_cols=120 Identities=28% Similarity=0.534 Sum_probs=105.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ ++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDE 145 (207)
T ss_dssp EETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCH
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccc
Confidence 3577889999999999999999999999999999999999999999998 678888776544 6899999999999654
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..+++..++...++ +++++||++|.|++++|++|.+.+..
T Consensus 146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred cchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 45677888888888887 89999999999999999999988754
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=1.2e-22 Score=146.63 Aligned_cols=119 Identities=29% Similarity=0.515 Sum_probs=105.1
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
+..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 137 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK 137 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 34478999999999999999999999999999999999999999999999999887766799999999999987777888
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+..++...+++++++||++|.|++++|++|.+.+...
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 888888888899999999999999999999999887553
No 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=3.7e-24 Score=152.83 Aligned_cols=120 Identities=49% Similarity=0.823 Sum_probs=98.4
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.
T Consensus 76 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~ 155 (199)
T 3l0i_B 76 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 155 (199)
T ss_dssp EETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc
Confidence 45778899999999999999999999999999999999999999999999999999777666799999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+..++++.++...+++++++||+++.|++++|++|.+.+.
T Consensus 156 v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 156 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7767778888888999999999999999999999987653
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=1.4e-22 Score=145.46 Aligned_cols=118 Identities=31% Similarity=0.584 Sum_probs=102.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++++. .|+..+..... +.|+++|+||+|+....
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 72 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 150 (204)
T ss_dssp ECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECHHHHTCH
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhccch
Confidence 45777889999999999999999999999999999999999999999986 78888877654 78999999999986543
Q ss_pred ------------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 ------------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..+++..+++..++ +++++||++|.|++++|+++.+.+
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 3777888889998886 599999999999999999998754
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=1.3e-22 Score=144.13 Aligned_cols=118 Identities=17% Similarity=0.289 Sum_probs=96.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--------CCCeEEEEeeCCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--------SNIVIMMAGNKSD 75 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piivv~nK~D 75 (163)
++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 34457899999999999999999999999999999999999999999999888866521 2689999999999
Q ss_pred CcccccCCHHHHHH------HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHS------LAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 76 l~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+..... .++... +++..+++++++||+++.|++++|++|.+.+...
T Consensus 139 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 139 AAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp STTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 965422 222211 1144567899999999999999999999988764
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=6.9e-23 Score=141.30 Aligned_cols=117 Identities=17% Similarity=0.308 Sum_probs=92.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~ 82 (163)
+...+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. .
T Consensus 40 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 117 (164)
T 1r8s_A 40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--M 117 (164)
T ss_dssp ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--C
Confidence 3445789999999999999999999999999999999999999999999988886643 247899999999999643 2
Q ss_pred CHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++..... ...+++++++||+++.|++++|+++.+.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 223322221 1234579999999999999999999887643
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.88 E-value=6.2e-22 Score=141.46 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=90.7
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.+|||||++.+..++..+++++|++++|||++++.+++++..|+..+..... .++|+++|+||+|+.. .+..++
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~ 146 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEER 146 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHH
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHH
Confidence 6899999999999999999999999999999999999999999999988876532 4799999999999964 556777
Q ss_pred HHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 87 GHSLAEK-----------------EGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 87 ~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+.+++.. .+.+++++||++|.|++++|+++.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 147 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 7766542 23579999999999999999998764
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=4.7e-22 Score=144.05 Aligned_cols=118 Identities=31% Similarity=0.556 Sum_probs=103.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... ++|+++|+||+|+.+...
T Consensus 58 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~ 136 (221)
T 3gj0_A 58 HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV 136 (221)
T ss_dssp EETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS
T ss_pred EECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc
Confidence 3577889999999999999999999999999999999999999999999999999988765 789999999999965433
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
. .+...+++..+++++++||+++.|++++|++|.+.+..
T Consensus 137 -~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 137 -K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp -C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred -c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 24556777889999999999999999999999988754
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=1.2e-21 Score=139.08 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=93.6
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.+|||+|++.+..++..+++++|++|+|||++++.+++++..|+..+..... .+.|+++|+||+|+.. .+..++
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~ 144 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAE 144 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHH
Confidence 6889999999999999999999999999999999999999999999988876432 4799999999999964 455666
Q ss_pred HHHHHHH------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 87 GHSLAEK------------EGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 87 ~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+.+.... .+++++++||++|.|++++|+++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 145 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp HHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 6655432 34579999999999999999998753
No 85
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.86 E-value=1.2e-20 Score=134.68 Aligned_cols=124 Identities=74% Similarity=1.142 Sum_probs=110.1
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.++|..+.+.+||++|++.+..++..++++++++++|||+++..+++.+..|+..+......+.|+++++||+|+...+.
T Consensus 48 ~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~ 127 (199)
T 2f9l_A 48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 127 (199)
T ss_dssp EETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 46788899999999999999888899999999999999999999998888888877665444689999999999987777
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+..+++..++...++.++++||+++.|++++|+.+.+.+.....
T Consensus 128 ~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~ 171 (199)
T 2f9l_A 128 VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 171 (199)
T ss_dssp SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 78888888999999999999999999999999999998876543
No 86
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=4.5e-21 Score=146.22 Aligned_cols=120 Identities=29% Similarity=0.549 Sum_probs=106.6
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL- 79 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~- 79 (163)
.+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+. .|+..+....+ ++|+++|+||+|+...
T Consensus 197 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 275 (332)
T ss_dssp EETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCH
T ss_pred EECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhccccc
Confidence 45788899999999999999999999999999999999999999999986 78888877655 7999999999998543
Q ss_pred -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+..+++..+++..++ +++++||++|.|++++|+.+.+.++.
T Consensus 276 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 276 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred chhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 56778889999999997 99999999999999999999987753
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=1.6e-21 Score=135.17 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=92.0
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+|||+|++.+...+..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.... ..+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 127 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSS 127 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHH
Confidence 46789999999999999999999999999999999999999999888888765532 479999999999996532 222
Q ss_pred HHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 86 DGHSL-----AEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 86 ~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.... +...+++++++||+++.|++++|+++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 22222 2233567999999999999999999998774
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=4.8e-22 Score=141.30 Aligned_cols=114 Identities=18% Similarity=0.319 Sum_probs=86.8
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ..
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~ 148 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PV 148 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CH
Confidence 346899999999999999999999999999999999999999999999888865432 469999999999996432 22
Q ss_pred HHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 85 EDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 85 ~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+++.... ...+++++++||+++.|++++|++|.+.+.
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 3322211 122457999999999999999999987663
No 89
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.86 E-value=7.8e-22 Score=140.48 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=94.2
Q ss_pred CEEEEEEEEeCCChhhHhhhh---hhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc-
Q 031238 5 GKTVKAQIWDTAGQERYRAIT---SAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH- 78 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~---~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~- 78 (163)
+..+.+++|||+|+++|.... ..+++++|++|+|||++++ +++..+..|+..+..... +.|+++|+||+|+..
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-DMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-TCEEEEEEECGGGSCH
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeccccCch
Confidence 566789999999999987766 8999999999999999997 677777788887754444 799999999999753
Q ss_pred ------cccCCHHHHHHHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 79 ------LRAVTEEDGHSLAE----KEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 79 ------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+.+..+..+.+++ ..+++|+++||++ .|++++|+.+++.+
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 23455556677777 6678999999999 99999999998765
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=134.56 Aligned_cols=113 Identities=24% Similarity=0.353 Sum_probs=94.2
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcccccCCH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~~~~~~ 84 (163)
+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~ 144 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTS 144 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCH
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCH
Confidence 6789999999999999999999999999999999999999999999888876532 3689999999999964 3345
Q ss_pred HHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 85 ~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+++..... ..+++++++||+++.|++++|++|.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 145 VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 55555553 235689999999999999999999887644
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.8e-20 Score=132.24 Aligned_cols=113 Identities=19% Similarity=0.306 Sum_probs=90.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.+|||+|++++..++..+++++|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ....++
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~ 137 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAE 137 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHH
Confidence 6889999999999999999999999999999999999999999999988876532 4699999999999964 233444
Q ss_pred HHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 87 GHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 87 ~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..... ..+++++++||++|.|++++|++|++.+..
T Consensus 138 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 138 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 444432 235689999999999999999999887643
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=9.7e-21 Score=133.29 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=91.1
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+... .+
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~ 136 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--AS 136 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HH
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HH
Confidence 46789999999999999999999999999999999999999999888888765422 4789999999999965332 23
Q ss_pred HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+.. ...+++++++||++|.|++++|+++.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 332221 1224579999999999999999999887643
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.85 E-value=1e-20 Score=132.90 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=90.9
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~ 142 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAE 142 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHH
Confidence 678999999999999999999999999999999999999999999888887653 247999999999999642 33444
Q ss_pred HHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 87 GHSLAE-----KEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 87 ~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+..... ..+++++++||+++.|++++|++|.+.
T Consensus 143 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 443331 234579999999999999999998754
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.85 E-value=2.5e-20 Score=131.17 Aligned_cols=114 Identities=22% Similarity=0.310 Sum_probs=93.6
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+|||+|++++...+..+++++|++++|||++++.+++++..|+..+..... .+.|+++|+||+|+.+.. ..+
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 138 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCN 138 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHH
Confidence 36789999999999999999999999999999999999999999989888876532 469999999999996532 333
Q ss_pred HHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 86 DGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 86 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..+... ..+++++++||+++.|++++|+++.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 139 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 3333221 235689999999999999999999987754
No 95
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=5.8e-23 Score=147.03 Aligned_cols=118 Identities=31% Similarity=0.596 Sum_probs=100.9
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+++..+.+.+|||+|++++...+..+++++|++|+|||++++.+++.+. .|+..+....+ ++|+++|+||+|+....
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 72 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 150 (204)
Confidence 35677788999999999999999999999999999999999999999886 78877766544 68999999999996532
Q ss_pred ------------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 81 ------------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 81 ------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+..+++..+++..++ +++++||++|.|++++|+++++.+
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 4555667778888887 899999999999999999998765
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=9.7e-22 Score=138.87 Aligned_cols=114 Identities=17% Similarity=0.291 Sum_probs=92.0
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.+.+|||||++.+...+..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.... ..+
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 142 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEA 142 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHH
Confidence 46789999999999999999999999999999999999999999888888766432 479999999999996432 222
Q ss_pred HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+..... ...+++++++||+++.|++++|+++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 322221 2234579999999999999999999988743
No 97
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=1.8e-21 Score=150.58 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=100.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D 75 (163)
.+.+++|||+|++.++..|..+|++++++|+|||+++ ..++.+...|+..+..... .+.|+|+|+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999998 5679999999999876532 4799999999999
Q ss_pred Ccccc---------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 76 LNHLR---------------AVTEEDGHSLAE-----------KEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 76 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
+...+ .+..+++..++. ..++.++++||+++.||+++|+++.+.+....
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 85332 366778888776 34668999999999999999999999887644
No 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.84 E-value=1.1e-20 Score=133.71 Aligned_cols=115 Identities=22% Similarity=0.383 Sum_probs=91.9
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+... ...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 142 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDE 142 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCH
Confidence 356789999999999999999999999999999999999999999999888866432 47999999999999643 223
Q ss_pred HHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 85 ~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
++...... ..+++++++||+++.|++++|++|.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33222211 224578999999999999999999886643
No 99
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=6e-21 Score=147.59 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=95.9
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKS 74 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~ 74 (163)
+.+.+++|||+|++.++.+|..+|++++++|+|||++ +..+++++..|+..+..... .+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 77899999999998876532 479999999999
Q ss_pred CCccccc--C-------------------CHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHH
Q 031238 75 DLNHLRA--V-------------------TEEDGHSLAEK----------------EGLSFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 75 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
|+...+. + ..+++..++.. ..+.++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854322 1 13556666432 123568999999999999999999
Q ss_pred HHHHHHHh
Q 031238 118 TEIYHIIS 125 (163)
Q Consensus 118 ~~~~~~~~ 125 (163)
+.+.....
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.83 E-value=3.1e-21 Score=136.10 Aligned_cols=117 Identities=21% Similarity=0.398 Sum_probs=93.9
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+..+.+.+|||+|++.+..++..++++++++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+.+.+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHH
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhH
Confidence 4567899999999999999999999999999999999987 578889999998876644 68999999999986544332
Q ss_pred ---HHHHHHHHHHcCCc----EEEeccCCCC-CHHHHHHHHHHHHHH
Q 031238 84 ---EEDGHSLAEKEGLS----FLETSALEAT-NVEKAFQTILTEIYH 122 (163)
Q Consensus 84 ---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~~~~l~~~~~~ 122 (163)
.+.++.+++.++++ ++++||+++. +++++++.+.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 23345566666776 9999999997 899999888876644
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=6.6e-20 Score=128.47 Aligned_cols=113 Identities=17% Similarity=0.309 Sum_probs=89.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~ 139 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASE 139 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHH
Confidence 678999999999999999999999999999999999999999999998887653 247999999999998642 33444
Q ss_pred HHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 87 GHSLAEK-----EGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 87 ~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
....... .+++++++||+++.|++++|+++.+.+.+
T Consensus 140 i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 140 VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 4333321 23479999999999999999999988754
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=139.50 Aligned_cols=116 Identities=27% Similarity=0.362 Sum_probs=90.7
Q ss_pred ecCEEEEEEEEe-----------------------CCChhhHhhhhhhhhc---------------------CCcEEEEE
Q 031238 3 VEGKTVKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLV 38 (163)
Q Consensus 3 ~~~~~~~l~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~ii~v 38 (163)
+++..+.++||| ++|+++|..++..+++ ++|++|+|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 467889999999 6677777777777777 79999999
Q ss_pred EECCCh--hHHHHHHHHHHHHHhh-cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHH
Q 031238 39 YDITKR--QTFDNVLRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 39 ~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~ 114 (163)
||++++ .+++.+..|+..+... ...++|+++|+||+|+...+.+ ++++.++.. .+++++++||+++.|++++|+
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 999998 8999999999988765 2346999999999999654443 566777765 478999999999999999999
Q ss_pred HHHHHH
Q 031238 115 TILTEI 120 (163)
Q Consensus 115 ~l~~~~ 120 (163)
+|.+.+
T Consensus 248 ~l~~~l 253 (255)
T 3c5h_A 248 TLVQLI 253 (255)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 103
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=5.8e-20 Score=143.88 Aligned_cols=120 Identities=14% Similarity=0.175 Sum_probs=97.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 75 (163)
.+.+++|||+|++.++..|..+|++++++|+|||+++ ..+|+++..|+..+.... ..+.|++||+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3789999999999999999999999999999999999 889999999999988753 25799999999999
Q ss_pred Cccccc---C---------------------------CHHHHHHHH-----HH--------cCCcEEEeccCCCCCHHHH
Q 031238 76 LNHLRA---V---------------------------TEEDGHSLA-----EK--------EGLSFLETSALEATNVEKA 112 (163)
Q Consensus 76 l~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~ 112 (163)
+...+. + ..+++..++ +. .++.++++||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854322 2 134455553 22 2456789999999999999
Q ss_pred HHHHHHHHHHHHhH
Q 031238 113 FQTILTEIYHIISK 126 (163)
Q Consensus 113 ~~~l~~~~~~~~~~ 126 (163)
|.++.+.+.....+
T Consensus 376 F~~v~~~I~~~~l~ 389 (402)
T 1azs_C 376 FNDCRDIIQRMHLR 389 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888766543
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.81 E-value=3.6e-21 Score=146.82 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=92.4
Q ss_pred EEEEEEEeCCChhhHhh---hhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238 7 TVKAQIWDTAGQERYRA---ITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL-- 79 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~-- 79 (163)
.+++++|||+|+++|.. .+..+|++++++|+|||++++ +++..+..|+..+....+ ++|++++|||+|+...
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHH
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhh
Confidence 36899999999999964 468899999999999999987 344444555555554444 7999999999999643
Q ss_pred -----ccCCHHHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238 80 -----RAVTEEDGHSLAEK----EGLSFLETSALEATNVEKAFQTILTEIYHIISK 126 (163)
Q Consensus 80 -----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 126 (163)
+++..++++++++. +++.|+++||++ .++.++|..+++.+......
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 35666677777775 578999999987 69999999999877665443
No 105
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=2.1e-20 Score=145.03 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=92.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 75 (163)
.+.+++|||+|++.++..|..++++++++|||||+++ ..++.+...|+..+.... ..+.|+|+|+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 678999999999987653 24799999999999
Q ss_pred Ccccc----------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238 76 LNHLR----------------AVTEEDGHSLAE-----------KEGLSFLETSALEATNVEKAFQTILTEIYHIIS 125 (163)
Q Consensus 76 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 125 (163)
+...+ .++.+++..++. ..++.++++||+++.|++++|+++.+.+.....
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 85432 266777777652 345788999999999999999999998876543
No 106
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.81 E-value=2e-20 Score=143.01 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=99.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKS 74 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~ 74 (163)
+.+.+++|||+|++.++..|..+|++++++|+|||++ +..++.+...|+..+..... .+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4478999999999999999999999999999999664 66788888889988876533 579999999999
Q ss_pred CCcccc----------------cCCHHHHHHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238 75 DLNHLR----------------AVTEEDGHSLAE----------KEGLSFLETSALEATNVEKAFQTILTEIYHII 124 (163)
Q Consensus 75 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 124 (163)
|+.+.+ ++..+++..++. ..++.++++||+++.||+.+|+.+.+.+++..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 986543 467778877743 34567899999999999999999999887654
No 107
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.81 E-value=8.8e-19 Score=124.35 Aligned_cols=119 Identities=77% Similarity=1.159 Sum_probs=105.5
Q ss_pred eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+++..+.+++||++|.+++...+..+++.++++++|||+++..+++.+..|+..+........|+++++||.|+.+.+.
T Consensus 72 ~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~ 151 (191)
T 1oix_A 72 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 151 (191)
T ss_dssp EETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 46788889999999999998888899999999999999999999998888888877665444689999999999987677
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+..+++..++...++.++++||+++.|++++|+.+.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 778888999999999999999999999999999998765
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=144.03 Aligned_cols=117 Identities=17% Similarity=0.315 Sum_probs=88.3
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~ 82 (163)
+...+.+.||||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+..
T Consensus 205 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-- 282 (329)
T 3o47_A 205 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-- 282 (329)
T ss_dssp EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--
T ss_pred ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--
Confidence 33456899999999999999999999999999999999999999999888877765433 479999999999996533
Q ss_pred CHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+++..... ..+++++++||++|.|++++|++|++.+.+
T Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 283 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 2233322221 123469999999999999999999987743
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=3.3e-20 Score=149.24 Aligned_cols=117 Identities=20% Similarity=0.344 Sum_probs=93.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~ 82 (163)
+.+.+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+..... .++|+|+|+||+|+.+..
T Consensus 362 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-- 439 (497)
T 3lvq_E 362 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-- 439 (497)
T ss_dssp ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--
T ss_pred EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--
Confidence 44557899999999999999999999999999999999999999999989888866533 479999999999996432
Q ss_pred CHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..++...... ..+++++++||++|.|++++|++|.+.+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 440 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2333322211 123359999999999999999999987644
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.80 E-value=2.1e-18 Score=125.47 Aligned_cols=119 Identities=19% Similarity=0.177 Sum_probs=89.4
Q ss_pred EEEEEEeCCCh------hh----HhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQ------ER----YRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~------~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
+.+.||||||+ +. +.. +..++..+|++|+|||++++.++. ....|+..+..... ++|+++|+||+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~-~~piilv~nK~D 153 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS-NKSIVIGFNKID 153 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc-CCcEEEEEeCcc
Confidence 57899999998 33 222 234578899999999999987754 33466666654422 689999999999
Q ss_pred CcccccCCHH---HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhH
Q 031238 76 LNHLRAVTEE---DGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIYHIISKKA 128 (163)
Q Consensus 76 l~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 128 (163)
+...+.+..+ ....++...+ ++++++||++|.|++++|++|.+.+.+......
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 211 (228)
T 2qu8_A 154 KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAESI 211 (228)
T ss_dssp GCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9776666654 4556666666 789999999999999999999999887665443
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=8.3e-20 Score=131.36 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=80.1
Q ss_pred EEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCccccc
Q 031238 7 TVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+.+.+|||||++.+.. ++..+++++|++|+|||+++.. ++.....|+..+... ...++|+++|+||+|+.....
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence 57899999999999987 8888999999999999999854 466665544443322 224689999999999965432
Q ss_pred CC--HHHHHHHHH---------------------------------Hc--CCcEEEeccCCC------CCHHHHHHHHHH
Q 031238 82 VT--EEDGHSLAE---------------------------------KE--GLSFLETSALEA------TNVEKAFQTILT 118 (163)
Q Consensus 82 ~~--~~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~ 118 (163)
.. .+....... .. +++|+++||++| .|++++|++|.+
T Consensus 133 ~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 133 AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 11 011111111 11 557999999999 999999999986
Q ss_pred H
Q 031238 119 E 119 (163)
Q Consensus 119 ~ 119 (163)
.
T Consensus 213 ~ 213 (214)
T 2fh5_B 213 I 213 (214)
T ss_dssp H
T ss_pred h
Confidence 4
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=2.9e-19 Score=135.93 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=94.3
Q ss_pred EEEEEEEeCCChhhH-----hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCeEEEEeeCCCCcc-
Q 031238 7 TVKAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA--DSNIVIMMAGNKSDLNH- 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~- 78 (163)
.+.+.+|||||++.+ ..++..+++++|++|+|||++++.+++++..|...+.... ..++|+++|+||+|+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 568999999999988 6788899999999999999999999998877655444332 23699999999999865
Q ss_pred -ccc----CCHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 79 -LRA----VTEEDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 -~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
.+. +..++++.+++.+| ++++++||++ .++.++|..++..+..
T Consensus 131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 343 45577788888887 6899999999 8999999998876543
No 113
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=3.3e-19 Score=136.88 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=98.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGN 72 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~n 72 (163)
+.+.+.+++|||+|++.++..|..+|++++++|+|||++ +..++.+...|+..+..... .+.|+++++|
T Consensus 157 ~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 157 VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence 334578999999999999999999999999999999998 67889999999998876543 5799999999
Q ss_pred CCCCcccc---------------cCCHHHHHHHHH-Hc--------------------------CCcEEEeccCCCCCHH
Q 031238 73 KSDLNHLR---------------AVTEEDGHSLAE-KE--------------------------GLSFLETSALEATNVE 110 (163)
Q Consensus 73 K~Dl~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~i~ 110 (163)
|+|+...+ ....+++..++. ++ ++.++++||+++.|++
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99985321 123455544432 22 3678999999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q 031238 111 KAFQTILTEIYHIISK 126 (163)
Q Consensus 111 ~~~~~l~~~~~~~~~~ 126 (163)
.+|+.+.+.++. ..+
T Consensus 317 ~vF~~v~~~Il~-~l~ 331 (340)
T 4fid_A 317 RVFMLAVDVIMK-NMA 331 (340)
T ss_dssp HHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHH-HHH
Confidence 999999999987 443
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=2.3e-18 Score=119.29 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=83.1
Q ss_pred EEEEEEeCCChhhHh------hhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||+|+..+. .+...+++ ++|++++|+|+++.+. ...|+..+... ++|+++|+||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKS 123 (165)
T ss_dssp EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHH
T ss_pred cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccc
Confidence 578999999988764 34456665 8999999999998543 34566666542 6899999999998655
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+.. +++.+++.++++++++||++|.|++++|+++.+.+
T Consensus 124 ~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 124 LGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred cChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 54443 35677888889999999999999999999998764
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=1.2e-17 Score=117.43 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=86.8
Q ss_pred EEEEEeCCC-----------hhhHhhhhhhhhcC-CcEEEEEEECCChhHHHHH-HHHHHH--------HHh-hcCCCCe
Q 031238 9 KAQIWDTAG-----------QERYRAITSAYYRG-AVGALLVYDITKRQTFDNV-LRWLRE--------LRD-HADSNIV 66 (163)
Q Consensus 9 ~l~l~Dt~G-----------~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------i~~-~~~~~~p 66 (163)
.+.+||||| ++.+...+..++++ +++++++|++.+..++..+ ..|... +.. ....++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 478999999 77888888888887 8888888888887788776 455542 222 1224689
Q ss_pred EEEEeeCCCCcccccCCHHHHHHHHHHcCCc-------EEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS-------FLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 67 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+++|+||+|+...+ .+..+.+++.++++ ++++||++|.|++++|+++.+.+..
T Consensus 125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 99999999986543 56677788888764 7999999999999999999988754
No 116
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.72 E-value=8.8e-18 Score=127.41 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=87.2
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
.+++||+ +++++.+++.+++++|++|+|||++++. +++.+..|+..+.. .++|+++|+||+|+.+.+.+ +++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~ 136 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKV 136 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHH
Confidence 5789999 8899999999999999999999999987 68888899887654 26899999999999654432 446
Q ss_pred HHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 031238 88 HSLAEKEG--LSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 88 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+.+++.++ ++++++||+++.|++++|..+..
T Consensus 137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 66777666 89999999999999999987753
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=5.6e-18 Score=137.48 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=94.7
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
+..+.+.+|||+|++.+..+...+++++|++|+|||+++. +....|+..+....+ +.|+++|+||+|+...+.+..
T Consensus 95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCH
T ss_pred CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCH
Confidence 3457899999999999999999999999999999999875 445678888877755 689999999999987778888
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.++.++...+++++++||++|.|++++|+.+.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 88888888889999999999999999999999887754
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.71 E-value=2.1e-17 Score=113.16 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=75.9
Q ss_pred EEEEEeCCChhh-------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 9 KAQIWDTAGQER-------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 9 ~l~l~Dt~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+.+|||+|+.. +...+..+++.+|++|+|||++++.+... .|+...... .+.|+++|+||+|+.+..
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~- 124 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE- 124 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG-
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch-
Confidence 688999999876 45566678999999999999998543321 222222222 258999999999996542
Q ss_pred CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++.+++ ..++ +++++||+++.|++++|+++.+.+
T Consensus 125 ---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 125 ---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 2333444 5677 899999999999999999998754
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.70 E-value=6.7e-17 Score=114.21 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=80.0
Q ss_pred EEEEEeCCC----------hhhHhhhhhhhhcCC---cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 9 KAQIWDTAG----------QERYRAITSAYYRGA---VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 9 ~l~l~Dt~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+.+||||| ++.+..++..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~D 145 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKAD 145 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcc
Confidence 478999999 788888888888877 9999999999876665532 2222222 3689999999999
Q ss_pred CcccccCCH--HHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 76 LNHLRAVTE--EDGHS-LAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 76 l~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+...+.+.. +++.+ +....+.+++++||+++.|++++|+++.+.+
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 146 KIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp GSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 976444322 22222 2222356899999999999999999998765
No 120
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.70 E-value=8.2e-17 Score=112.01 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=78.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~ 84 (163)
..+.+|||+|++.+..++..++..+|++|+|||++++ .+++.+ ..+. ..++|+++|+||+|+... ..
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~---~~ 124 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA---NP 124 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS---CH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC---CH
Confidence 3577999999999999888999999999999999884 333322 2222 236899999999999642 23
Q ss_pred HHHHHHHHHc-------C--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKE-------G--LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 85 ~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+......... + ++++++||+++.|++++|++|.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 3333332222 1 479999999999999999999887654
No 121
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.69 E-value=1.8e-16 Score=120.48 Aligned_cols=111 Identities=18% Similarity=0.106 Sum_probs=90.9
Q ss_pred EEEEEEEeCCChhh----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
..++.||||||... +......+++.+|++++|+|++++.++.+...|+..+... +.|+++|+||+|+
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccC
Confidence 56799999999843 3456677899999999999999987877777777776653 5899999999998
Q ss_pred cccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
........+....+.+..+ .+++++||++|.|++++|+.+.+.+
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 7445555677777877775 6899999999999999999998776
No 122
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=7.2e-18 Score=117.75 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=77.2
Q ss_pred EEEEEeCCChhhHh----h--h--hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 9 KAQIWDTAGQERYR----A--I--TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~----~--~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.+|||+|++++. . + ...+++++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 131 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGET 131 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCC
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcch
Confidence 47899999985421 1 1 124589999999999999987765 3467777766544569999999999985321
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
. .+++..+.+++++||+++.|++++|+++.+.+.
T Consensus 132 ~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 132 L-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp C-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred h-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1 112224568999999999999999999987653
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=2.4e-17 Score=115.93 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=85.2
Q ss_pred EEEEEEeCCChhhHh------hhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||+|+..+. .++..++. .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS 127 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence 578999999987763 44566664 5999999999886 4555667766654 36899999999998655
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+.+. ...+.+++..+++++++||+++.|++++|+++.+.+..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 128 LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5444 35667788889999999999999999999999887643
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.67 E-value=9.6e-17 Score=119.24 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred EEEEEEEeCCChhhHhh------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
...+.||||||...+.. +.+.++ .++|++|+|+|+++.++. ..|...+... ++|+++|+||+|+..
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAK 124 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCC
Confidence 35789999999876643 335555 589999999999986543 3455555443 689999999999866
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+.+.. ....+++.++++++++||++|.|++++|+++.+.+.
T Consensus 125 ~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 125 KTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 555543 367788888999999999999999999999988653
No 125
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.66 E-value=5.5e-16 Score=109.20 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=80.5
Q ss_pred EEEEEeCCC----------hhhHhhhhhhhhcCC---cEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 9 KAQIWDTAG----------QERYRAITSAYYRGA---VGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 9 ~l~l~Dt~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+.+|||+| ++.+..++..+++.+ |++++|+|+++..+ ...+..|+... +.|+++|+||
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK 142 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTK 142 (195)
T ss_dssp TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEEC
T ss_pred cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence 468999999 777888888888876 99999999987533 33334444332 5899999999
Q ss_pred CCCccccc--CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 74 SDLNHLRA--VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 74 ~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+|+..... ...+++..++... +++++++||+++.|++++|+++.+.+.
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 99864322 2334555565553 368999999999999999999988764
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.65 E-value=8.8e-17 Score=120.31 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=83.9
Q ss_pred EEEEEEEeCCChhhHh------hhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+.+|||||...+. .+.+.++. ++|++|+|||+++.++. ..|...+.. .++|+++++||+|+..
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLD 121 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCC
Confidence 4568999999987764 45566665 69999999999986543 345555544 2689999999999865
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.+.+. .....+++.++++++++||++|.|++++|+++.+.+
T Consensus 122 ~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 122 GQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred cCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 55444 345678888899999999999999999999998754
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=6.4e-16 Score=123.23 Aligned_cols=111 Identities=17% Similarity=0.094 Sum_probs=85.9
Q ss_pred EEEEEeCCC----------hhhHhhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAG----------QERYRAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G----------~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.|||||| ++.|..++. .+++.+|++|+|+|++++.+. ....|...+.. .++|+++|+||+|+.
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGS
T ss_pred eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcC
Confidence 689999999 677776655 478999999999999885332 22344444443 368999999999998
Q ss_pred ccccCCHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKE-----GLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+....+++.+.++.. +++++++||++|.|++++|+.+.+.+...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 320 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 76666667766666554 46899999999999999999999877554
No 128
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.65 E-value=1.4e-15 Score=124.59 Aligned_cols=112 Identities=20% Similarity=0.271 Sum_probs=89.9
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
++..+.+.||||||+.+|...+..+++.+|++|+|+|++++.+......|..... .++|+++|+||+|+.... .
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~ 140 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P 140 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence 4567899999999999999989999999999999999998776666666654432 268999999999996532 2
Q ss_pred HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+...++.+.+++ .++++||++|.|++++|+++.+.+.
T Consensus 141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 3344556666676 4999999999999999999887653
No 129
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.63 E-value=2.3e-15 Score=123.25 Aligned_cols=112 Identities=25% Similarity=0.341 Sum_probs=89.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
++..+.+.||||||+.+|...+..+++.+|++|+|+|++++.+......|..... .++|+++|+||+|+.... .
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~ 142 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V 142 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence 4557899999999999999888889999999999999999877766666655432 368999999999996432 2
Q ss_pred HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+...++.+..++ +++++||++|.|++++|+++++.+.
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3334556666666 4899999999999999999887663
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.63 E-value=2e-16 Score=117.43 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=79.1
Q ss_pred EEEEEeCCChhhHhh----------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 9 KAQIWDTAGQERYRA----------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
.+.||||||...+.. +.+.++ .++|++|+|+|+++.++...+.. .+.. .+.|+++|+||+|+
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~---~~~pvilv~NK~Dl 122 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFE---LGKPVVVALNMMDI 122 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTT---SCSCEEEEEECHHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHH---cCCCEEEEEEChhc
Confidence 689999999876543 556677 89999999999998655544333 3332 26899999999998
Q ss_pred cccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
...+.+.. ....+.+..+++++++||++|.|++++|+++.+.
T Consensus 123 ~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 123 AEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 65443322 2445777789999999999999999999998764
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=1.8e-16 Score=114.12 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=75.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcC----CcEEEEEEECC-ChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRG----AVGALLVYDIT-KRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~ 78 (163)
+.+.+|||||++.+...+..+++. +|++|+|||++ ++.++..+..|+..+... ...++|+++|+||+|+..
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 367899999999998888888887 89999999999 888898888888887664 234799999999999976
Q ss_pred cccCC------HHHHHHHHHHcCCcEEEeccCCCCC
Q 031238 79 LRAVT------EEDGHSLAEKEGLSFLETSALEATN 108 (163)
Q Consensus 79 ~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 108 (163)
.+.+. .+++..++...+.+++++||+++.+
T Consensus 135 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 135 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 55433 3445666666677899999998765
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.62 E-value=1.9e-15 Score=108.99 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=77.5
Q ss_pred EEEEEEeCCC----------hhhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 8 VKAQIWDTAG----------QERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
..+.|||||| ++.+..+...+++. +|++++|+|++++.+. ....|+..+.. .++|+++|+||+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~ 154 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKC 154 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECG
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEecc
Confidence 5688999999 45666677777776 7889999999875332 12344444443 258999999999
Q ss_pred CCcccccCC--HHHHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 75 DLNHLRAVT--EEDGHSLAEK-------EGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 75 Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
|+....... .+........ .+.+++++||+++.|++++|++|.+.+...
T Consensus 155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 986533321 1222222222 356899999999999999999999877543
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.61 E-value=6.7e-15 Score=113.94 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=87.6
Q ss_pred EEEEEEeCCChhhHh---------hhhhhhhcCCcEEEEEEECCChh--HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 8 VKAQIWDTAGQERYR---------AITSAYYRGAVGALLVYDITKRQ--TFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
..+.+|||+|..... .....+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 458999999984421 12223455799999999998876 67777888888877654 6899999999998
Q ss_pred cccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 77 NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.....+ ++...++...+++++++||++|+|++++|+++.+.+...
T Consensus 293 ~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 293 ADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp CCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 654332 445566667788999999999999999999999888554
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.61 E-value=3.7e-15 Score=117.09 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=85.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~ 84 (163)
...+.||||||+++|.......++.+|++|+|+|++++.++.+...|+..+.... ..|+++++||+|+.+.... ..
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHH
Confidence 3789999999999999888889999999999999998776667777766555442 3589999999998643221 11
Q ss_pred HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 85 EDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++.++.... +++++++||++|.|++++|+.|.+.+
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2233333222 46899999999999999999888755
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=2e-15 Score=119.74 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=83.6
Q ss_pred EEEEEeCCCh----------hhHhhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQ----------ERYRAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~----------~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.||||||+ +.|..++. .+++.+|++++|+|++++.++++. .|+..+.. .++|+++|+||+|+.
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGS
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCC
Confidence 4889999998 55555444 478899999999999998777664 46665543 368999999999997
Q ss_pred ccccCCHHHHH-HHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGH-SLAEK----EGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 78 ~~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+.+....++.. .+.+. .+++++++||++|.|++++|+.+.+.+...
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 65554433332 22222 256899999999999999999999877653
No 136
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.60 E-value=1.9e-15 Score=120.99 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=70.8
Q ss_pred EEEEEEeCCChhhHhhhh--------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRAIT--------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
+.+.||||+|++.+...+ ..+++.+|++++|||++++.+++.+..+...+... . ++|+++|+||+|+...
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAAN 358 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTT
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCc
Confidence 468999999997765433 34688999999999999987765332222222222 2 5899999999999654
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
... ..+.+.+....+++++||++|.|++++|+++.+.+.
T Consensus 359 ~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 359 ADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp THH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred cch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 432 123344332368999999999999999999998775
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.59 E-value=2.8e-15 Score=115.46 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=86.1
Q ss_pred EEEEEEeCCChhh----Hhhhhhhhh---cCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQER----YRAITSAYY---RGAVGALLVYDITK---RQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~----~~~~~~~~~---~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D 75 (163)
..+.||||||... +..+...++ .++|++|+|+|+++ ..+++++..|+.++..+.. .++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 4689999999754 223444444 45999999999998 7788888899999887653 4799999999999
Q ss_pred CcccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+...+ +..+.+.+..+ .+++++||+++.|++++|++|.+.+
T Consensus 286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 86422 34555666665 6899999999999999999998876
No 138
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.58 E-value=5.7e-16 Score=115.94 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=78.4
Q ss_pred EEEEEEeCCChhhHh----------hhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQERYR----------AITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~----------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
..+.||||||...+. ...+.++ .++|++|+|+|+++.+....+ ...+... ++|+++|+||+|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~D 123 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLD 123 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHH
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECcc
Confidence 467899999987654 2233343 799999999999986554443 3333333 589999999999
Q ss_pred CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+.+.+.+. .....+.+..+++++++||++|.|++++|+++.+.+
T Consensus 124 l~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 124 IAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred chhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 86544332 124567777899999999999999999999987654
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=2.1e-14 Score=113.01 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=74.6
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA- 81 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 81 (163)
...+.||||||++.|.......+..+|++|+|+|++++ ++++.+..| ... . ..|+++++||+|+.+...
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~-~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-G-IDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-T-CCCEEEEEECTTSSCTTTT
T ss_pred ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-C-CCeEEEEEEccCCCCHHHH
Confidence 37899999999999987777777889999999999953 444433322 212 2 358999999999965433
Q ss_pred -CCHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 -VTEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 -~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
...+++.++++.. +++++++||++|.|+++++++|.+.+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2345566666542 56899999999999999999887654
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.57 E-value=1.6e-15 Score=119.76 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=82.0
Q ss_pred EEEEEeCCChhhHhhh-------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 9 KAQIWDTAGQERYRAI-------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
.+.||||||++++..+ ...++.++|++|+|||++.... ...|+..+... ++|+++|+||+|+...+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence 6899999999876544 3457899999999999943322 34555555544 689999999999976554
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
. +..+.+++.++++++++||++|.|++++|++|.+.+
T Consensus 158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3 556666677788999999999999999999998877
No 141
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.57 E-value=2.7e-15 Score=111.97 Aligned_cols=107 Identities=20% Similarity=0.109 Sum_probs=81.9
Q ss_pred EEEEEeCCChhhHhh------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238 9 KAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 80 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 80 (163)
.+.+|||||...+.. ..+.++ .++|++++|+|+++.+ ....|+..+.... ..|+++|+||+|+...+
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKK 125 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCccc
Confidence 589999999877654 556666 6899999999999853 3334455544432 28999999999986544
Q ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+... ...+.+..+++++++||++|.|++++|+.+.+.+.
T Consensus 126 ~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 126 GAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp TCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 43332 56677888999999999999999999999988753
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.57 E-value=4.8e-15 Score=112.43 Aligned_cols=111 Identities=15% Similarity=0.086 Sum_probs=88.0
Q ss_pred cCEEEEEEEEe-CCC-----hhhHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238 4 EGKTVKAQIWD-TAG-----QERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDL 76 (163)
Q Consensus 4 ~~~~~~l~l~D-t~G-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 76 (163)
-|+.+.++.|| +.| ++++..+.+.+++++|++++|||++++. ++..+..|+..+.. .++|+++|+||+|+
T Consensus 46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDL 122 (302)
T ss_dssp BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGG
T ss_pred CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccC
Confidence 45677888887 433 6778888889999999999999999886 88888888886654 36899999999998
Q ss_pred cccccCC-HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 031238 77 NHLRAVT-EEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117 (163)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 117 (163)
.+...+. .++...+.+..+++++++||+++.|++++++.+.
T Consensus 123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 6533222 3445556667789999999999999999998764
No 143
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=3.4e-15 Score=113.16 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=76.7
Q ss_pred EEEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHH-HHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..++.||||||... +......+++++|++++|||++++.+.. ..|+ ..+.... .+.|+++|+||+|+.
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAA 130 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence 46889999999765 4556677899999999999999864433 3344 3444332 368999999999986
Q ss_pred ccccCCHHHHHHHHHH-cC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEK-EG-LSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.... . .....+. .+ .+++++||+++.|++++|+.+.+.+
T Consensus 131 ~~~~---~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 131 KYPE---E-AMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SSHH---H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CchH---H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 4322 0 2222232 23 3789999999999999999987654
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.53 E-value=4.5e-14 Score=111.15 Aligned_cols=108 Identities=21% Similarity=0.191 Sum_probs=78.5
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA- 81 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 81 (163)
...+.||||||+++|.......+..+|++|+|+|++++ ++.+.+..| ... . ..|+++++||+|+.+...
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~-~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-G-QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-T-CCCEEEEEECGGGSCHHHH
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-C-CCcEEEEEECccCCCHHHH
Confidence 37899999999999887777778889999999999954 344433322 222 1 358999999999865321
Q ss_pred -CCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 82 -VTEEDGHSLAEK---EGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 82 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
...+++..+.+. .+++++++||+++.|+++++++|.+.+
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 123344555543 356899999999999999999887654
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.53 E-value=6.3e-14 Score=112.30 Aligned_cols=106 Identities=23% Similarity=0.184 Sum_probs=78.9
Q ss_pred EEEEEEeCCChh-hHh--------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQE-RYR--------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~-~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
..+.||||+|.+ .+. .....+++.+|++|+|||++++.++++.. ++..+ .++|+++|+||+|+..
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVE 364 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCC
T ss_pred eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECccccc
Confidence 458999999987 543 12346789999999999999887765532 22322 2689999999999964
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
. +..+++..+.. .+.+++++||+++.|++++|++|.+.+..
T Consensus 365 ~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 365 K--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp C--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred c--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 2 34455544432 34689999999999999999999987654
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.52 E-value=8.7e-14 Score=110.41 Aligned_cols=104 Identities=22% Similarity=0.260 Sum_probs=75.7
Q ss_pred EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.+|||||.+. +...+..+++++|++|+|+|++++.+.. .+..|+.. .++|+++|+||+|+.
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENL 123 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSH
T ss_pred EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCc
Confidence 478999999753 3455677899999999999998764432 23344332 158999999999985
Q ss_pred ccccCCHHHH-HHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDG-HSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
+. . .... .++. ..++ +++++||++|.|++++|+.+.+.+..
T Consensus 124 ~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 124 RE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 32 1 1222 3333 4566 79999999999999999999887753
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=1e-13 Score=111.29 Aligned_cols=107 Identities=23% Similarity=0.159 Sum_probs=80.9
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--C
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--V 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--~ 82 (163)
..+.||||||+++|.......++.+|++|+|+|+++ +++.+.+. .+.. .++|+++++||+|+.+... .
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~ 145 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKR 145 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHH
Confidence 578999999999998888888999999999999987 44443332 2222 2578899999999964221 1
Q ss_pred CHHHHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 83 TEEDGHSLAEKE----GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 83 ~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
..+++..+.... +.+++++||++|.|+++++++|.+.+.
T Consensus 146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 133445555554 468999999999999999999888764
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.51 E-value=4.7e-14 Score=113.20 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=71.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHH------HHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN------VLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.....+.||||||+++|......+++.+|++|+|+|++++.++.. ....+...... + ..|+|+|+||+|+.
T Consensus 107 ~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 107 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNV 184 (483)
T ss_dssp ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcc
Confidence 3445689999999999999988999999999999999998754322 22222222211 1 35799999999986
Q ss_pred ccccCCHHHH----HHHHHHcC-----CcEEEeccCCCCCHHHH
Q 031238 78 HLRAVTEEDG----HSLAEKEG-----LSFLETSALEATNVEKA 112 (163)
Q Consensus 78 ~~~~~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 112 (163)
+.+....+++ ..+....+ ++++++||++|.|++++
T Consensus 185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 5332222332 33333333 47899999999999864
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.51 E-value=6.8e-14 Score=113.27 Aligned_cols=69 Identities=23% Similarity=0.159 Sum_probs=55.7
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
..+.+.||||||+.+|...+..+++.+|++|+|+|++++.+......| ..+.. .++|+++|+||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 346789999999999998889999999999999999987666554444 33332 3689999999999853
No 150
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.49 E-value=3.3e-13 Score=110.60 Aligned_cols=107 Identities=22% Similarity=0.202 Sum_probs=77.7
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC---
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--- 82 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--- 82 (163)
.+.||||||++.|..++...++.+|++|+|||+++ +++++.+.. +.. .++|+++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence 58999999999999988888999999999999998 566654432 221 36899999999998542211
Q ss_pred ----------CHH----------HHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 83 ----------TEE----------DGHSLAEKEG---------------LSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 83 ----------~~~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
... +........+ .+++++||++|.|++++++++...+..
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 010 0111111112 278999999999999999999887643
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.48 E-value=2.4e-14 Score=112.53 Aligned_cols=101 Identities=19% Similarity=0.126 Sum_probs=73.8
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 82 (163)
+.....+.||||||+++|.......++.+|++|+|+|++++.. .....|+..+... ++| +++++||+|+.+....
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~ 146 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPEL 146 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHH
T ss_pred ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHH
Confidence 3344678999999999998888888999999999999988643 2344555544433 577 8999999998642211
Q ss_pred ---CHHHHHHHHHHcC-----CcEEEeccCCCCC
Q 031238 83 ---TEEDGHSLAEKEG-----LSFLETSALEATN 108 (163)
Q Consensus 83 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 108 (163)
..+++..+.+..+ .+++++||++|.|
T Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 147 LDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 1234555666655 5799999999987
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.48 E-value=4e-14 Score=112.25 Aligned_cols=107 Identities=24% Similarity=0.164 Sum_probs=76.8
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--C-
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--V- 82 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--~- 82 (163)
....+.||||||+++|...+..+++.+|++|+|+|++++.. .....++..+... + ..|+++|+||+|+.+... +
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHHHH
Confidence 34578999999999998888888999999999999998642 2233344333322 1 246999999999964211 1
Q ss_pred -CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHH
Q 031238 83 -TEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQT 115 (163)
Q Consensus 83 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~ 115 (163)
..++...+++..+ ++++++||++|.|++++|+.
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1344556666666 57999999999999986543
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=7.5e-14 Score=110.84 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=74.2
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HH---HHHHHHHHHHhhcCCCCe-EEEEeeCCCCc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVLRWLRELRDHADSNIV-IMMAGNKSDLN 77 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~ 77 (163)
.....+.||||||+++|.......++.+|++|+|+|++++.. |+ +....+..+.. .++| +|+++||+|+.
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP 168 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence 344588999999999998888888999999999999997532 11 22222222221 2466 99999999984
Q ss_pred ccc------cCCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q 031238 78 HLR------AVTEEDGHSLAEKEG------LSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 78 ~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 114 (163)
... ....++...+.+..+ ++++++||++|.|++++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 311 111233444555544 3699999999999999766
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.48 E-value=9e-15 Score=116.00 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=78.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----CCC-CeEEEEeeCCCCcc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA----DSN-IVIMMAGNKSDLNH 78 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~-~piivv~nK~Dl~~ 78 (163)
+.....+.||||||+++|......+++.+|++|+|+|+++ .+|+....|..+..... ..+ .|+++++||+|+.+
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3445679999999999998888889999999999999998 66764433222222211 113 46899999999864
Q ss_pred cc------cCCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 031238 79 LR------AVTEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 79 ~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 114 (163)
.. ....+++..+++..+ ++++++||++|.|+.++++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 21 112345566666665 5799999999999986654
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.47 E-value=9.4e-14 Score=108.02 Aligned_cols=112 Identities=10% Similarity=-0.029 Sum_probs=81.3
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEee-CCCCcccccCC
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGN-KSDLNHLRAVT 83 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~n-K~Dl~~~~~~~ 83 (163)
....+.||||||+++|.......++.+|++|+|+| +.. .+.+...++..+... ++|. ++++| |+|+ +...+.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~ 131 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAID 131 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHH
Confidence 34568999999999987777777899999999999 543 344455555544433 4666 88999 9998 432221
Q ss_pred --HHHHHHHHHHcC---CcEEE--eccCC---CCCHHHHHHHHHHHHHHH
Q 031238 84 --EEDGHSLAEKEG---LSFLE--TSALE---ATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 84 --~~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~~~~~l~~~~~~~ 123 (163)
.++++++.+..+ +++++ +||++ +.|++++++.|.+.+...
T Consensus 132 ~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 132 ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 134455554443 58999 99999 999999999999887554
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.46 E-value=7.8e-14 Score=109.40 Aligned_cols=112 Identities=20% Similarity=0.117 Sum_probs=78.1
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCccccc--
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRA-- 81 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~-- 81 (163)
.....+.||||||+++|.......++.+|++|+|+|+++..... ...++..+.. .++| +++++||+|+.+...
T Consensus 63 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~ 138 (397)
T 1d2e_A 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMV 138 (397)
T ss_dssp CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHH
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHH
Confidence 33467899999999999888888899999999999999854322 2233333332 2577 789999999864221
Q ss_pred -CCHHHHHHHHHHcC-----CcEEEeccCCCCC----------HHHHHHHHHHHH
Q 031238 82 -VTEEDGHSLAEKEG-----LSFLETSALEATN----------VEKAFQTILTEI 120 (163)
Q Consensus 82 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~~~~l~~~~ 120 (163)
...+++.++++..+ ++++++||+++.| +.++++.+.+.+
T Consensus 139 ~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 139 ELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 11245566666665 4899999999764 667776665443
No 157
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.46 E-value=7e-14 Score=100.00 Aligned_cols=104 Identities=12% Similarity=-0.032 Sum_probs=67.2
Q ss_pred CCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHH---HHHHhhc--CCCCeEEEEeeCC-CCcccccCCHHHHH
Q 031238 15 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL---RELRDHA--DSNIVIMMAGNKS-DLNHLRAVTEEDGH 88 (163)
Q Consensus 15 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~i~~~~--~~~~piivv~nK~-Dl~~~~~~~~~~~~ 88 (163)
.+|+..++.+|+.||.++|++|||+|++|.+-++ .+.-+ ..+.... ..++|++|++||. |++. ..+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 4588999999999999999999999999875433 33222 2222221 1478999999995 6753 34444443
Q ss_pred HHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 89 SLAEK----EGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 89 ~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+.... ....+..|||++|+|+.+.++||...+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 32211 2346899999999999999999987663
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=1.5e-13 Score=109.67 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=68.4
Q ss_pred EEEEEEeCCChhhHhhhh--------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYRAIT--------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.||||+|.+.+.... ..+++.+|++++|||++++.+... ..|+..+. ..|+++|+||+|+...
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCG
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcc
Confidence 457999999987654332 235789999999999998765543 34444442 3799999999999755
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+. ....+. .+.+++++||+++.|++++|+++.+.+..
T Consensus 346 ~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 346 QLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp GGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred hhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4432 111111 34689999999999999999999887643
No 159
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.44 E-value=1.2e-13 Score=104.63 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=76.4
Q ss_pred EEEEEEEeCCChh-h--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQE-R--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~-~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..++.||||||.. . +......+++.+|++++|+|+++ +.....|+..... ..+.|+++++||+|+.
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNV 129 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence 3578999999987 2 22334566889999999999977 2222233333222 2358999999999986
Q ss_pred ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+....+....+.+.+++ .++++||+++.|++++++.+...+
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4222223445556665666 699999999999999999988643
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.43 E-value=2.1e-12 Score=100.20 Aligned_cols=117 Identities=21% Similarity=0.132 Sum_probs=79.6
Q ss_pred ecCEEEEEEEEeCCCh---------hhHhhhhhhhhcCCcEEEEEEECCChh--HHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238 3 VEGKTVKAQIWDTAGQ---------ERYRAITSAYYRGAVGALLVYDITKRQ--TFDNVLRWLRELRDHADSNIVIMMAG 71 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~ 71 (163)
+++ ..+.+|||+|. +.+...+. .+..+|++++|+|++++. ....+..|...+......+.|+++|+
T Consensus 223 ~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~ 299 (364)
T 2qtf_A 223 INN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299 (364)
T ss_dssp ETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred ECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence 445 35789999997 22444333 578999999999999876 45555555554444433468999999
Q ss_pred eCCCCcccccC-CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 72 NKSDLNHLRAV-TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 72 nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
||+|+...... ....+..++... +.+++++||+++.|++++++.|.+.+..
T Consensus 300 NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 99998542210 011222333444 2368999999999999999999887654
No 161
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.43 E-value=2.1e-14 Score=114.82 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=65.1
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccc--
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLR-- 80 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~-- 80 (163)
...+.||||||+++|.......++.+|++|+|+|++++. +|+...+|...+......++| +|+++||+|+....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 357899999999999888888899999999999999862 333222222222222223577 99999999985311
Q ss_pred ----cCCHHHHHHHHHHc-C------CcEEEeccCCCCCHHHHHH
Q 031238 81 ----AVTEEDGHSLAEKE-G------LSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 81 ----~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~~~ 114 (163)
....+++..+++.. + ++++++||++|.|+.++|+
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 11123455566655 4 4599999999999988763
No 162
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.43 E-value=1.2e-13 Score=109.56 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=71.2
Q ss_pred EEEEEEeCCChh--------hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQE--------RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||+|++ .+...+..+++.+|++|+|+|++++.+..+ .|+..+... .++|+++|+||+|+...
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccc
Confidence 358899999985 566777888999999999999998755433 333333322 36899999999998543
Q ss_pred ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
... ..++. ..++ +++++||++|.|++++++++.+.+.
T Consensus 127 ~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 127 RAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp --C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred hhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 211 11122 3455 7899999999999999999987763
No 163
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.41 E-value=3e-13 Score=116.71 Aligned_cols=112 Identities=18% Similarity=0.094 Sum_probs=79.2
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV 82 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~ 82 (163)
+.....+.||||||+++|.......++.+|++|+|+|++++... +...++..+... ++| +|+++||+|+.+....
T Consensus 355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~ 430 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEEL 430 (1289)
T ss_dssp ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHH
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhh
Confidence 34456789999999999988888889999999999999986332 233444443332 577 8899999999642221
Q ss_pred ---CHHHHHHHHHHcC-----CcEEEeccCCC--------CCHHHHHHHHHHH
Q 031238 83 ---TEEDGHSLAEKEG-----LSFLETSALEA--------TNVEKAFQTILTE 119 (163)
Q Consensus 83 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~~~~l~~~ 119 (163)
..+++..+.+..+ ++++++||++| .|+.++++.+.+.
T Consensus 431 le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 431 LELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 1245566666665 57999999999 3466666665543
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=2.8e-12 Score=101.74 Aligned_cols=115 Identities=21% Similarity=0.166 Sum_probs=76.3
Q ss_pred ecCEEEEEEEEeCCChhhHhhh------------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEE
Q 031238 3 VEGKTVKAQIWDTAGQERYRAI------------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA 70 (163)
Q Consensus 3 ~~~~~~~l~l~Dt~G~~~~~~~------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 70 (163)
++|. .+.+|||+|..+.... ...+++.+|++++|+|++++.+..+. .+...+.. .++|+++|
T Consensus 225 ~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv 298 (439)
T 1mky_A 225 IDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVV 298 (439)
T ss_dssp ETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEE
T ss_pred ECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEE
Confidence 4554 4789999998543221 12467889999999999986555432 22222222 36899999
Q ss_pred eeCCCCcccccCCHHHHHH-HHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 71 GNKSDLNHLRAVTEEDGHS-LAEK----EGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 71 ~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+||+|+.+.+....++... +.+. .+.+++++||++|.|++++|+.+.+.+...
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999987644444443322 2222 246899999999999999999998876543
No 165
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.40 E-value=3.7e-14 Score=114.80 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=77.7
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-CHHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-TEEDG 87 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~ 87 (163)
.+.||||||++.|..++..+++.+|++|+|+|++++...... .++..+. ..++|+++++||+|+.+.... ...+.
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l 128 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKEL 128 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHH
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHH
Confidence 688999999999999999999999999999999986544332 2223332 236899999999998643221 11122
Q ss_pred HHH---HHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 88 HSL---AEKE--GLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 88 ~~~---~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..+ +..+ .++++++||++|.|++++|+.+...+
T Consensus 129 ~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 129 LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp HHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred HhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 111 1112 24799999999999999999988654
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.39 E-value=1.3e-13 Score=109.95 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=74.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHH---HHHHHHHHHHhhcCCCCe-EEEEeeCCCC
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFD---NVLRWLRELRDHADSNIV-IMMAGNKSDL 76 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 76 (163)
+.....+.||||||+++|.......++.+|++|+|+|++++. +|+ ....++..... .++| +|+++||+|+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl 157 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence 344568999999999999888888899999999999999753 221 22222222222 2454 9999999998
Q ss_pred ccccc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q 031238 77 NHLRA----VTEEDGHSLAEKEG-----LSFLETSALEATNVEKA 112 (163)
Q Consensus 77 ~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 112 (163)
.+... ...+++..+++..+ ++++++||++|.|+.++
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 63111 11234555666665 57999999999998755
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=107.36 Aligned_cols=115 Identities=15% Similarity=0.242 Sum_probs=62.9
Q ss_pred cCEEEEEEEEeCCCh-------hhHhhhhh-------hhhcCCcEE-----------EEEEECCC-hhHHHHHH-HHHHH
Q 031238 4 EGKTVKAQIWDTAGQ-------ERYRAITS-------AYYRGAVGA-----------LLVYDITK-RQTFDNVL-RWLRE 56 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~~ 56 (163)
++..+.+.+|||+|+ +.+..++. .+++.++++ +++|++++ ..++..+. .|+..
T Consensus 91 ~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~ 170 (361)
T 2qag_A 91 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKA 170 (361)
T ss_dssp -CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHH
T ss_pred CCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHH
Confidence 456678999999999 66666655 556554432 34555443 33444443 34433
Q ss_pred HHhhcCCCCeEEEEeeCCCCcccccCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 57 LRDHADSNIVIMMAGNKSDLNHLRAVTE--EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 57 i~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
+ ..++|+|+|+||+|+...+.+.. +.+..++...+++++++||+++.+ ++.|..+.+.+...
T Consensus 171 l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 171 I----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp T----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred h----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 3 23689999999999976554433 456667777789999999999999 88888888877553
No 168
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=97.39 Aligned_cols=105 Identities=9% Similarity=-0.062 Sum_probs=71.8
Q ss_pred CCChhhHhhhhhhhhcCCcEEEEEEECCChhHHH---HHHHHHHHHHhhc-CCCCeEEEEeeC-CCCcccccCCHHHHHH
Q 031238 15 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFD---NVLRWLRELRDHA-DSNIVIMMAGNK-SDLNHLRAVTEEDGHS 89 (163)
Q Consensus 15 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~piivv~nK-~Dl~~~~~~~~~~~~~ 89 (163)
.+|+...+.+|+.||.++|++|||+|++|.+.++ ++..+...+.... ..++|++|++|| .|++. .++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4688899999999999999999999999876433 2222212221211 247999999997 68753 344444432
Q ss_pred HHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 90 LAEK----EGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 90 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.... ....+..|||.+|+|+.+.++||.+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 2211 2346899999999999999999998764
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.7e-13 Score=111.52 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=72.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---H---HHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.....+.||||||+++|.......++.+|++|+|+|++++.. + ......+...... ...|+|+|+||+|+.
T Consensus 241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV 318 (611)
T ss_dssp ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTT
T ss_pred ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEeccccc
Confidence 3445689999999999998888889999999999999987521 1 1111222222111 124699999999986
Q ss_pred ccccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q 031238 78 HLRAVT----EEDGHSLAEKEG-----LSFLETSALEATNVEKA 112 (163)
Q Consensus 78 ~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 112 (163)
+..... .++...+....+ ++++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 522222 223334444444 47999999999999876
No 170
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.4e-12 Score=91.80 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=60.8
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcC----CcEEEEEEECC-ChhHHHHHHHHHHHHHhhc----CCCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRG----AVGALLVYDIT-KRQTFDNVLRWLRELRDHA----DSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~Dl~~ 78 (163)
+.+.+|||||++.+...+..++.. +|++|+|||++ +..++..+..|+..+.... ..+.|+++|+||+|+..
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 457899999999887777777776 89999999999 8899999888888776542 24799999999999965
Q ss_pred ccc
Q 031238 79 LRA 81 (163)
Q Consensus 79 ~~~ 81 (163)
.+.
T Consensus 171 ~~~ 173 (193)
T 2ged_A 171 ARP 173 (193)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 171
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.32 E-value=2.3e-12 Score=95.22 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=71.8
Q ss_pred EEEEEEeCCChhhHh-----------hhhhhhhcCCcEEEEEEECCChhHH-HHHHHHHHHHHhhcCCCCeEEEEee-CC
Q 031238 8 VKAQIWDTAGQERYR-----------AITSAYYRGAVGALLVYDITKRQTF-DNVLRWLRELRDHADSNIVIMMAGN-KS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piivv~n-K~ 74 (163)
..+.||||||+..+. .....+++++|++|+|||+++.... ..+..|+..+..... ..|+++|+| |+
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~ 149 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKE 149 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGG
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEccc
Confidence 468999999986542 1223367899999999999863222 223334433321111 246666665 99
Q ss_pred CCcccccCCH-------HHHHHHHHHcCCc---E--EEeccCCCCCHHHHHHHHHHHHHH
Q 031238 75 DLNHLRAVTE-------EDGHSLAEKEGLS---F--LETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 75 Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
|+... .+.. +.++.++...+.. + +++||+++.|++++|+.+.+.+..
T Consensus 150 Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 150 DLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 98642 2211 2244455555532 2 789999999999999999988765
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.32 E-value=1.1e-12 Score=98.69 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=74.6
Q ss_pred EEEEEEeCCChh-------------hHhhhhhhhhcCCcEEE-EEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 8 VKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 8 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+.||||||.. .+..+...+++.++.+| +|+|+++..+..+...++..+. ..+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence 578999999963 45667778888888776 7999987544333334444443 236899999999
Q ss_pred CCCcccccCCHHHHHHHHHH--cC-CcEEEeccCCCCCHHHHHHHHHHH
Q 031238 74 SDLNHLRAVTEEDGHSLAEK--EG-LSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 74 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+|+.+......+..+..... .+ .+++++||+++.|++++|+++.+.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 99865443223322210001 12 257889999999999999998863
No 173
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=90.49 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=70.1
Q ss_pred EEEEEEeCCCh-----------hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCC
Q 031238 8 VKAQIWDTAGQ-----------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~-----------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~ 74 (163)
..+.||||||. ..+......+++++|++|+|+|+++.... ...|+..+..... ...|+++|+||+
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 36789999993 34455555667789999999999754331 1222333322111 136999999999
Q ss_pred CCcccccCC------HHHHHHHHHHcCCcEEEeccCCC-----CCHHHHHHHHHHHH
Q 031238 75 DLNHLRAVT------EEDGHSLAEKEGLSFLETSALEA-----TNVEKAFQTILTEI 120 (163)
Q Consensus 75 Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~ 120 (163)
|+.....+. .+..+.+++..+..++.++...+ .++.++|+.+...+
T Consensus 156 D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 156 DDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp GGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 986544433 23567778888888888877654 46777777665554
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.31 E-value=2.5e-13 Score=109.15 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=73.6
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc--cC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR--AV 82 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~--~~ 82 (163)
..+.||||||++.|..++...++.+|++|+|+|++++ ++.+.+ ..... .++|+++++||+|+.... .+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v 123 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRV 123 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCT
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHH
Confidence 3578999999999999888889999999999999874 333332 22221 368999999999986421 11
Q ss_pred CHH--HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 031238 83 TEE--DGHSLAEKEG--LSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 83 ~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
..+ +...+...++ ++++++||++|.|++++|+++..
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 100 0000112222 58999999999999999998764
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=8.6e-12 Score=103.58 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=53.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.++||||+|+.++...+..+++.+|++++|+|+++..... ...++..+... ++|+++|+||+|+.
T Consensus 73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence 467899999999999888889999999999999998764432 23444444432 68999999999985
No 176
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.30 E-value=1.4e-12 Score=103.89 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=71.3
Q ss_pred EEEEEEeCCC--------hhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAG--------QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G--------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
..+.+|||+| ++.+......+++.+|++|+|+|..++... ...|+..+... .++|+++|+||+|+.+.
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-----
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhh
Confidence 4688999999 777888888999999999999998874332 22333333332 36899999999998532
Q ss_pred ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
.. ...++. ..++ .++++||++|.|+.++++.+.+.+
T Consensus 147 ~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 147 RA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp --------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred hh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence 11 111111 2243 578999999999999999987755
No 177
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.27 E-value=1.5e-12 Score=97.18 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=61.2
Q ss_pred cCEEEEEEEEeCCChh-------hHhhhh-------hhhhc-------------CCcEEEEEEECCChhHHHHHHHHHHH
Q 031238 4 EGKTVKAQIWDTAGQE-------RYRAIT-------SAYYR-------------GAVGALLVYDITKRQTFDNVLRWLRE 56 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~-------~~~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~ 56 (163)
++..+.+.||||||.. .+..+. ..++. ++|+++++++.+.......-..++..
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 4445789999999972 222222 23333 37899999977652111111334444
Q ss_pred HHhhcCCCCeEEEEeeCCCCcccccCC--HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 57 LRDHADSNIVIMMAGNKSDLNHLRAVT--EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 57 i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+.. ++|+++|+||+|+....... .+.+.+.....+++++.+||.+++|+++++++|.+.
T Consensus 141 l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 141 LHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred Hhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 432 58999999999985432221 233455556678899999999999999998887654
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.24 E-value=4.3e-11 Score=96.95 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=52.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
..+.+.||||||+.+|......+++.+|++|+|+|++++... ....++.... ..++|+++++||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 346789999999999888888899999999999999976432 2233333332 23689999999999853
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.23 E-value=9.9e-11 Score=97.78 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=54.7
Q ss_pred CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+..+.+.||||||+.+|...+..+++.+|++|+|+|+++.........| ..... .++|+++|+||+|+.
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRM 147 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCcc
Confidence 3458899999999999988888999999999999999987655443333 32222 368999999999984
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.22 E-value=6.4e-11 Score=98.73 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=55.6
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++|+||+|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 3678999999999998888999999999999999998777665555543 332 2689999999999853
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.21 E-value=5.7e-11 Score=99.12 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=79.0
Q ss_pred EEEEEeCCChhhH---hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238 9 KAQIWDTAGQERY---RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 9 ~l~l~Dt~G~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
.+.||||||.... ......+++++|++|+|+|++++.+..+...|...+.. .+.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 5899999998663 34556788999999999999988777666555444332 25789999999998654311111
Q ss_pred ----------HHHH-----HHHH--------cCCcEEEeccC--------------CCCCHHHHHHHHHHHHHHH
Q 031238 86 ----------DGHS-----LAEK--------EGLSFLETSAL--------------EATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 86 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~~~~~l~~~~~~~ 123 (163)
.... +... ...+++++||+ ++.|++++++.+.+.+...
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 1111 1111 12369999999 9999999999998877543
No 182
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.18 E-value=1.1e-10 Score=90.63 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=72.4
Q ss_pred ChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHH----HHH
Q 031238 17 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHS----LAE 92 (163)
Q Consensus 17 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~ 92 (163)
..++|..+++.+++.++++++|+|++++. ..|...+.+... ++|+++|+||+|+... ....+...+ +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 45788889999999999999999999853 345555555444 6899999999998643 233333333 356
Q ss_pred HcCC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238 93 KEGL---SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 93 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
..++ .++.+||+++.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999988653
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.17 E-value=8.8e-12 Score=96.45 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=73.4
Q ss_pred EEEEEeCCChhhH-------------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 9 KAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 9 ~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+.||||||...+ ..+...+++++|++|+|+|..+..... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5789999998665 567778899999999999876432221 2333333444445689999999999
Q ss_pred CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQT 115 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 115 (163)
+.+......+..+.+....++.|+++++.++.++++.+..
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 8765554444444444445678999999998877765443
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.17 E-value=1.6e-10 Score=91.08 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=80.2
Q ss_pred EEEEEEeCCChhh----Hhhhhhh---hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQER----YRAITSA---YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~----~~~~~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 78 (163)
..+.+||++|... +..+... .+..++.+++++|++ ...+.++..|..++..+.. ...|.++|+||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 4578999999732 1112222 245799999999998 5566677777766665432 2478999999999864
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
. ...+.........+..++.+||++++|++++++++.+.+..
T Consensus 284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 3 12334444555557889999999999999999999988854
No 185
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.16 E-value=2e-10 Score=84.50 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=72.4
Q ss_pred EEEEEEeCCCh--------hhHhhhhhhh----hcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 8 VKAQIWDTAGQ--------ERYRAITSAY----YRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~--------~~~~~~~~~~----~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
..+.||||||. +.+......+ .+++|++|+|+|+++... ...+..++..+......+.|+|+++||.
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 46889999996 2222222222 389999999999985322 1222334433321111258999999999
Q ss_pred CCcccccC------CHHHHHHHHHHcCCcEEEeccCC-----CCCHHHHHHHHHHHHHH
Q 031238 75 DLNHLRAV------TEEDGHSLAEKEGLSFLETSALE-----ATNVEKAFQTILTEIYH 122 (163)
Q Consensus 75 Dl~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~ 122 (163)
|+.+.... ..+..+.+.+..+..++.++... +.|++++++.+.+.+..
T Consensus 150 Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 150 DLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 98542110 01345667777787787776654 47888998888777654
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.13 E-value=5.7e-13 Score=109.29 Aligned_cols=102 Identities=24% Similarity=0.192 Sum_probs=57.5
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HH---HHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TF---DNVLRWLRELRDHADSNIV-IMMAGNKSDLNH 78 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~ 78 (163)
....+.||||||+++|.......++.+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+.+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 3467899999999999887778899999999999998632 11 111122222221 2455 999999999864
Q ss_pred cccC----CHHHHHHHH-HHcCC-----cEEEeccCCCCCHH
Q 031238 79 LRAV----TEEDGHSLA-EKEGL-----SFLETSALEATNVE 110 (163)
Q Consensus 79 ~~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 110 (163)
.... ...++..+. ...++ +++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1111 122333444 44454 69999999999998
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.11 E-value=1.7e-10 Score=87.27 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=68.9
Q ss_pred EEEEEEeCCChhh-------------HhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 8 VKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 8 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+.||||||... +......+++++|++++|+|.++.. .-.....+...+. ..+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence 4689999999753 5566778899999999999974321 1111112233222 236899999999
Q ss_pred CCCcccccCCHHHHHHHHHHcCCcEEEeccCC------CCCHHHHHHHHHHHHH
Q 031238 74 SDLNHLRAVTEEDGHSLAEKEGLSFLETSALE------ATNVEKAFQTILTEIY 121 (163)
Q Consensus 74 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~~~~ 121 (163)
+|+........+.........+..++++++.+ +.|+.++++.+.+.+.
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 99865443223222211111225677776644 6788888888776664
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.11 E-value=4.8e-10 Score=93.51 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=54.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
.+.+.||||||+.++...+..+++.+|++|+|+|++++.+......|. .+.. .++|+++|+||+|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 357899999999998888888999999999999999876665554443 3333 2689999999999853
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.11 E-value=2.5e-10 Score=84.09 Aligned_cols=109 Identities=15% Similarity=-0.032 Sum_probs=68.2
Q ss_pred EEEEEEeCCChhhHhhhhh------hhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 78 (163)
+.+.||||+|......... ..+.. +++|+++|+... ..+.....+...... ..++|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5789999999976543321 24566 899999987643 222222111111111 12589999999999854
Q ss_pred cccCCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 79 LRAVTEEDGHS----------------------------LAEKEG--LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 79 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
...+ ++... +++.++ .+++++||+++.|++++++++.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 3221 11111 123333 47999999999999999999987664
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.09 E-value=4.6e-10 Score=79.82 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=71.8
Q ss_pred EEEEEeCCChh----------hHhhhhhhhh---cCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 9 KAQIWDTAGQE----------RYRAITSAYY---RGAVGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 9 ~l~l~Dt~G~~----------~~~~~~~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+.+|||+|.. .+......++ ..++++++++|++++.+... +..|+.. .+.|+++++||
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEEC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEec
Confidence 36899999973 2333333444 57899999999988654432 2333321 25899999999
Q ss_pred CCCcccc--cCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 74 SDLNHLR--AVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 74 ~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+|+.... +.....+..++...+ +.++++||+++.|++++++.+.+.+.
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 9975321 111234445555554 46889999999999999998877653
No 191
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=3.4e-10 Score=87.97 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=70.3
Q ss_pred CChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHH----HH
Q 031238 16 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHS----LA 91 (163)
Q Consensus 16 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~ 91 (163)
..+++|...+..++.+++++++|+|++++.+ .|...+.+... ++|+++|+||.|+... ....+...+ ++
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence 4577889999999999999999999998763 23333333333 6899999999998653 223333333 34
Q ss_pred HHcCC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238 92 EKEGL---SFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 92 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
+..|+ .++.+||+++.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 55666 68999999999999999988654
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.05 E-value=1.3e-10 Score=89.89 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=69.9
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
.+.+.||||+|.... ....+..+|++++|+|.+..+.+..+... . ...|+++|+||+|+...... ...
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~------~--~~~p~ivVlNK~Dl~~~~~~-~~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG------V--LELADIVVVNKADGEHHKEA-RLA 238 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT------S--GGGCSEEEEECCCGGGHHHH-HHH
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh------H--hhcCCEEEEECCCCcChhHH-HHH
Confidence 357899999995332 22345889999999998765444222110 1 13689999999998542221 111
Q ss_pred HHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 87 GHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 87 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
...+... ++.+++++||++|.|++++++++.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222221 24689999999999999999999988765
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.03 E-value=1.3e-09 Score=88.65 Aligned_cols=70 Identities=20% Similarity=0.125 Sum_probs=55.6
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.+.++|+||||+.+|.......++-+|++|+|+|+..+..-....-| ....++ ++|.++++||+|..
T Consensus 96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDRE 165 (548)
T ss_dssp EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSC
T ss_pred EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccch
Confidence 33456789999999999998888999999999999999987555444444 333333 68999999999974
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.03 E-value=3.5e-10 Score=81.21 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=69.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
+.+.+|||+|+.... ..+....+.+++|+|++..... ...+... . +.|+++|+||+|+........+..
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 467899999851111 1112357889999999865321 1111111 1 368899999999865433455666
Q ss_pred HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 88 HSLAEKE--GLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 88 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
...++.. +.+++++||++|.|++++|+++.+.+..
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 6666554 3689999999999999999999887644
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.00 E-value=8.8e-11 Score=88.87 Aligned_cols=111 Identities=13% Similarity=0.185 Sum_probs=61.7
Q ss_pred CEEEEEEEEeCCCh-------hhHhhhhh-------hhhcC-------------CcEEEEEEECCChhHHHHHH-HHHHH
Q 031238 5 GKTVKAQIWDTAGQ-------ERYRAITS-------AYYRG-------------AVGALLVYDITKRQTFDNVL-RWLRE 56 (163)
Q Consensus 5 ~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~-~~~~~ 56 (163)
+....+.+|||+|. +.+..+.. .+++. +++++++.+.+.. +++... .++..
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~ 151 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKA 151 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHH
Confidence 33467899999998 44444443 34333 3345555554321 222222 22222
Q ss_pred HHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 57 LRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 57 i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.. ...|+++|+||.|+...+++ ..+++.++++.++++++++||+++ |++++|..+.+.+.
T Consensus 152 ---l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 152 ---IH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp ---HT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred ---HH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 22 35799999999998654332 245778888889999999999999 99999999988774
No 196
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.95 E-value=7.4e-10 Score=82.01 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=51.1
Q ss_pred EEEEEEeCCChhhHhhhhhhhhc---------CCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCC--CCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYR---------GAVGALLVYDITKRQTFDNV-LRWLRELRDHADS--NIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~---------~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~--~~piivv~nK~D 75 (163)
..+.||||||+.++......+++ ++|++++|++++... +... ..|+..+...... ..|+++|+||+|
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 47899999999776554444433 789999999997644 3332 4566666654432 249999999999
Q ss_pred CcccccCC
Q 031238 76 LNHLRAVT 83 (163)
Q Consensus 76 l~~~~~~~ 83 (163)
+...+...
T Consensus 163 l~~~~~~~ 170 (262)
T 3def_A 163 FSPPDELS 170 (262)
T ss_dssp CCCSTTCC
T ss_pred cCCCCCcc
Confidence 85433333
No 197
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=5.6e-10 Score=87.48 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 114 (163)
.+|+++|+||.|+.. .. ..+...+.....+.+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~-~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-DE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC-HH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc-hH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 389999999999752 11 11222222233367899999999988876543
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.87 E-value=2e-09 Score=91.56 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=58.5
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
++..+.+.||||||+.+|...+..+++.+|++|+|+|++++.++.....|.... . .++|+++|+||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 455889999999999999999999999999999999999987776655554332 2 368999999999985
No 199
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=8.2e-09 Score=77.37 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=68.4
Q ss_pred eCCChh-hHhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHH
Q 031238 14 DTAGQE-RYRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSL 90 (163)
Q Consensus 14 Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 90 (163)
..||+. .........++.+|++++|+|+.++.+.. .+..|+ .++|+++|+||+|+.+... .+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence 467775 33444556789999999999999986653 333332 2689999999999964211 1222333
Q ss_pred HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238 91 AEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123 (163)
Q Consensus 91 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 123 (163)
.+..+++++.+||.++.|++++++.+.+.+...
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 444578999999999999999999887766543
No 200
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.84 E-value=3e-09 Score=79.06 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=50.0
Q ss_pred EEEEEEEeCCChhhHhhhhh-------hh--hcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCC--CeEEEEeeCC
Q 031238 7 TVKAQIWDTAGQERYRAITS-------AY--YRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSN--IVIMMAGNKS 74 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~-------~~--~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piivv~nK~ 74 (163)
...+.||||||+.++..... .+ ..++|++++|+|++.. ++... ..|+..+....+.+ .|+++|+||+
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 35789999999865532211 11 3479999999998753 23322 36666665543322 6999999999
Q ss_pred CCcccccCC
Q 031238 75 DLNHLRAVT 83 (163)
Q Consensus 75 Dl~~~~~~~ 83 (163)
|+.......
T Consensus 165 Dl~~~~~~~ 173 (270)
T 1h65_A 165 QFSPPDGLP 173 (270)
T ss_dssp SCCCGGGCC
T ss_pred ccCCcCCCC
Confidence 986544433
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.82 E-value=7.5e-09 Score=79.52 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=64.9
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH--H
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE--E 85 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~--~ 85 (163)
+.+.||||+|....... ..+.+|++++|+|++....+..+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 56899999997654332 4689999999999976533221111 00 1367899999999854222111 1
Q ss_pred HHHHHHHHc-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 86 DGHSLAEKE-------GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 86 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
+........ ..+++++||++|.|++++++.|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222211121 346899999999999999999998765
No 202
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.81 E-value=1.1e-09 Score=84.59 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=65.6
Q ss_pred EEEEEEeCCChh-------------hHhhhhhhhhcCCc-EEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 8 VKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 8 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..+.||||||.. .+..+...++++++ ++++|.|++....-.+...++..+ .+.+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---DPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH---CTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh---CcCCCceEEEecc
Confidence 568999999952 45566677776665 445556665432211222233333 3346899999999
Q ss_pred CCCcccccCCHHHHHHH--HHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238 74 SDLNHLRAVTEEDGHSL--AEKEGL-SFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 74 ~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+|+.+......+..+.. ....++ .++++||+++.|++++++++.+
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99865433222221100 001122 4678999999999999888875
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=2.8e-09 Score=83.97 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=53.3
Q ss_pred EEEEEEEeCCChhhHh-------h------------------hhhhhhcCCcEEEEEEECCCh-hHHHHHH-HHHHHHHh
Q 031238 7 TVKAQIWDTAGQERYR-------A------------------ITSAYYRGAVGALLVYDITKR-QTFDNVL-RWLRELRD 59 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~-------~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~ 59 (163)
...+.+||++|...+. . +.+.++.++++.+++|..+.. .++.... .|+..+.
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH- 165 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-
Confidence 3478999999975431 1 112344555544444433321 2233332 5665553
Q ss_pred hcCCCCeEEEEeeCCCCcccccCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 60 HADSNIVIMMAGNKSDLNHLRAVTE--EDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 60 ~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
.++|+|+|+||+|+...+.+.. +.+...+...+++++++|++++.+++++|..+..
T Consensus 166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 2689999999999865554433 5667777888999999999999999987776654
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.76 E-value=4.1e-09 Score=87.16 Aligned_cols=70 Identities=23% Similarity=0.190 Sum_probs=54.1
Q ss_pred cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.+.++|+||||+.+|.......++-+|++|+|+|+..+..-.. ...+...... ++|.++++||+|..
T Consensus 63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSS
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEeccccc
Confidence 4445678999999999999888899999999999999997644332 3333344433 58899999999974
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.74 E-value=7.5e-08 Score=74.20 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=62.4
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
+.+.|+||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999996422 1334678999999999987543322211 11 13578999999998532111 1111
Q ss_pred HHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238 88 HSLAE----------KEGLSFLETSALEATNVEKAFQTILTEIYH 122 (163)
Q Consensus 88 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 122 (163)
..+.. .+..+++.+||+++.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22211 123568999999999999999999887644
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.69 E-value=1.3e-07 Score=79.16 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=54.2
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
..+.++|+||||+.+|.......++-+|++|+|+|+..+.......-| ....+. ++|.++++||+|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH---TCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc---CCCeEEEEcccccc
Confidence 468899999999999999888999999999999999976554333333 333333 68999999999973
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.50 E-value=4.1e-08 Score=82.34 Aligned_cols=105 Identities=11% Similarity=0.102 Sum_probs=66.9
Q ss_pred EEEEEeCCChhh-------------Hhhhhhhhh-cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 9 KAQIWDTAGQER-------------YRAITSAYY-RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 9 ~l~l~Dt~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.+.|+||||... ...+...++ ..+|++++|+|++.+..-.+...++..+. ..+.|+++|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence 467999999533 233444444 57899999999986432222223333332 3368999999999
Q ss_pred CCcccccCCHHHHHHHHHH----cC-CcEEEeccCCCCCHHHHHHHHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEK----EG-LSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
|+.+.......... .+. .+ .+++.+||+++.|++++++.+.+
T Consensus 228 Dlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 228 DLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 98754433222111 011 12 25678899999999999888775
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.50 E-value=5.8e-08 Score=79.02 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=51.7
Q ss_pred EEEEEeCCChhh-----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 9 KAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 9 ~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
.+.||||||... +......++..+|++|+|+|+++.........|+..+.. .+.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 589999999864 556677788999999999999875444445556655433 257999999999986
Q ss_pred cc
Q 031238 78 HL 79 (163)
Q Consensus 78 ~~ 79 (163)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=2.4e-06 Score=66.03 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=30.5
Q ss_pred CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
.+|+++++|+.|.........+.+..++...+.+++++||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 499999999998532122224566778877888999999753
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.40 E-value=9.3e-07 Score=67.77 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=63.1
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
.+.+.|+||+|...-.. .....+|.+++++|+..++....+..... ..+.++++||.|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~--------~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh--------ccccEEEEEchhccCchhHHHHH
Confidence 35689999999753221 23578999999999875432221111111 13456777999974322222222
Q ss_pred HHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 87 GHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 87 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.+.+... +..+++.+||+++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333221 1347899999999999999999987654
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.39 E-value=1.6e-06 Score=67.21 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=36.8
Q ss_pred CCeEEEEeeCCCC--ccc-ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 031238 64 NIVIMMAGNKSDL--NHL-RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQT 115 (163)
Q Consensus 64 ~~piivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 115 (163)
.+|+++++||.|. .+. +....+.++.+++..+.+++++||+...++.++++.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 3899999999974 221 122346677788888899999999886666655443
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=1.9e-07 Score=69.24 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=60.3
Q ss_pred CChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHc
Q 031238 16 AGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE 94 (163)
Q Consensus 16 ~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~ 94 (163)
||+... .......++++|++++|+|+.++.+..... +. + . ++|.++|+||+|+.+... .+....+.+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence 555422 223456689999999999999876543210 01 1 1 589999999999964211 12223344455
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238 95 GLSFLETSALEATNVEKAFQTILTE 119 (163)
Q Consensus 95 ~~~~~~~Sa~~~~~i~~~~~~l~~~ 119 (163)
++++ .+||+++.|++++++.+...
T Consensus 75 g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 7888 99999999999998876543
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.35 E-value=6e-07 Score=64.32 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=46.1
Q ss_pred CeEEEEeeCCCCcccccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238 65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKE--GLSFLETSALEATNVEKAFQTILTEIY 121 (163)
Q Consensus 65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 121 (163)
.|+++|+||+|+...+....++...++... +.+++++||++|.|++++|+++.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 677999999998654445666777676654 568999999999999999999987764
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=1.7e-07 Score=70.97 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=59.8
Q ss_pred hhhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcE
Q 031238 22 RAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSF 98 (163)
Q Consensus 22 ~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 98 (163)
+.+.+...+++|.+++|+|+.+|.. ...+..++.... ..++|.++|+||+||.+.... ..+......+..|+++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 4556667899999999999987653 333344433222 236899999999999643210 0122333344568899
Q ss_pred EEeccCCCCCHHHHHH
Q 031238 99 LETSALEATNVEKAFQ 114 (163)
Q Consensus 99 ~~~Sa~~~~~i~~~~~ 114 (163)
+.+||.++.|+++++.
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999999888776554
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.05 E-value=1.6e-05 Score=61.36 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=53.9
Q ss_pred hhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC-HHHHHHHHHHcCCcEEEeccCC
Q 031238 28 YYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT-EEDGHSLAEKEGLSFLETSALE 105 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~ 105 (163)
..+++|.+++|+.. +|. +...+..++...... ++|.++|+||+||.+..... .+.........|++++.+||.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46899999988765 453 333344444332222 57889999999996432100 1112223345688999999999
Q ss_pred CCCHHHHHHH
Q 031238 106 ATNVEKAFQT 115 (163)
Q Consensus 106 ~~~i~~~~~~ 115 (163)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.001 Score=51.66 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=59.7
Q ss_pred EEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 78 (163)
.+++|.||||..... ...-..++.+|++++|+|++++.. ....+..++..... ...|.+++.||.|...
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 468899999974321 111234678999999999998743 22222333332221 3578889999999631
Q ss_pred --------cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238 79 --------LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114 (163)
Q Consensus 79 --------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 114 (163)
......++.+.+...+.+.--.+-...+...+++.+
T Consensus 197 i~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 197 ISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID 240 (376)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred hhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence 123456666666666555322222233344455443
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.29 E-value=0.00027 Score=56.93 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=59.8
Q ss_pred EEEEEEEeCCChhhHh-hhh---hhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCCccc
Q 031238 7 TVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDLNHL 79 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~ 79 (163)
.+.+.|+||||..... .+. ... +..+|.+++|+|++......... ..+.. .+|+ ++|+||.|....
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a---~~~~~----~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA---KAFKD----KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH---HHHHH----HHCCCCEEEECTTSCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH---HHHHh----hcCceEEEEeCCccccc
Confidence 3568999999975321 111 111 22789999999998754322221 22221 1464 789999997532
Q ss_pred ccCCHHHHHHHHHHcCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 031238 80 RAVTEEDGHSLAEKEGLSF------------------LETSALEATN-VEKAFQTILTE 119 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 119 (163)
.. .........+.++ +.+|+..|.| +.++++++.+.
T Consensus 256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11 1112223333332 3468899998 98888888755
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.66 E-value=0.019 Score=44.69 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=29.4
Q ss_pred CCeEEEEeeCCCCcc--cccCCHHHHHHHHHHcC--CcEEEeccCC
Q 031238 64 NIVIMMAGNKSDLNH--LRAVTEEDGHSLAEKEG--LSFLETSALE 105 (163)
Q Consensus 64 ~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 105 (163)
.+|+++++|+.|-.- +...-.+.+.+++...+ .+++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 389999999998321 11223566777777665 7899999875
No 219
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.54 E-value=0.0017 Score=50.66 Aligned_cols=36 Identities=11% Similarity=-0.016 Sum_probs=23.6
Q ss_pred EEEEEeCCChhhHhh-------hhhhhhcCCcEEEEEEECCCh
Q 031238 9 KAQIWDTAGQERYRA-------ITSAYYRGAVGALLVYDITKR 44 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~ 44 (163)
.++||||||...... ....+++++|++++|+|+++.
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 589999999876543 345678999999999999754
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.03 E-value=0.017 Score=45.67 Aligned_cols=91 Identities=18% Similarity=0.112 Sum_probs=53.0
Q ss_pred EEEEEEeCCChhhH-----hhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 8 VKAQIWDTAGQERY-----RAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+.+.|+||+|.... ..+.. .....+|.+++|+|++......... ..+... -.+..+|.||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh---CCCeEEEEECCCCcc---
Confidence 56889999995321 11111 1233579999999998754433322 222222 234568999999742
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVE 110 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 110 (163)
..-.........+.++.+++. |++++
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred -cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 122334445566888877776 55544
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.73 E-value=0.03 Score=38.76 Aligned_cols=85 Identities=11% Similarity=-0.049 Sum_probs=53.1
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCeEEEEeeCCCCcccccCCHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA--DSNIVIMMAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~ 85 (163)
+.+.++|+++.. .......+..+|.+|++...+... ..+...+..+.... ..+.++.+|.|+.|... .. ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence 567899999876 333445677799999999876443 45555555554432 23567899999998532 11 23
Q ss_pred HHHHHHHHcCCcEE
Q 031238 86 DGHSLAEKEGLSFL 99 (163)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (163)
+..+..+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34445555565444
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.56 E-value=0.049 Score=40.71 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=54.4
Q ss_pred EEEEEEeCCChhh--Hhh-hhh-----hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcc
Q 031238 8 VKAQIWDTAGQER--YRA-ITS-----AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNH 78 (163)
Q Consensus 8 ~~l~l~Dt~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~ 78 (163)
+.+.|+||||... ... +.. .....+|.+++|+|++...... .....+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---DLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---HHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4689999999765 211 111 1244789999999987543221 11222221 244 678999999632
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238 79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEK 111 (163)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 111 (163)
.......+....+.++..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23334556667788887776 4666654
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.65 E-value=0.24 Score=35.17 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=56.6
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
+.+.|+|+++... ......+..+|.+|++... +..++..+..++..+.........+.+|.|+.+.. .....+
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~--~~~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN--SRITSD-- 191 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC--TTSCHH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC--CCCCHH--
Confidence 5678999987642 2344567789999999876 45667777777777665543345678899999853 223333
Q ss_pred HHHHHHcCCcEEEe
Q 031238 88 HSLAEKEGLSFLET 101 (163)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (163)
.+.+..+.+++..
T Consensus 192 -~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 -EIEKVIGRPISKR 204 (245)
T ss_dssp -HHHHHHTSCEEEE
T ss_pred -HHHHHhCCCeEEE
Confidence 3444567776654
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.60 E-value=0.064 Score=42.33 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=53.1
Q ss_pred EEEEEEeCCChhh--H-----hhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQER--Y-----RAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~--~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
+.+.|.||+|... . ..+.. ...-..+.+++|+|+.......+....+.. . -.+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~---~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ---A---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH---H---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc---c---cCCcEEEEecccccc-
Confidence 4578999999633 1 11111 112246899999999875443333332322 2 135678999999632
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSALEATNV 109 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 109 (163)
..-.........+.++.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 223344455567888888876 6654
No 225
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.59 E-value=0.14 Score=35.85 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=53.0
Q ss_pred EEEEEEeCCCh-hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238 8 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED 86 (163)
Q Consensus 8 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 86 (163)
+.+.++|+++. ... .....+..+|.+|++...+ ..++..+...+..+.... +.++.+|.|+.+.... . ...+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHHH
Confidence 45789999886 432 2345677899999998764 455666666666665432 3568899999985320 1 1334
Q ss_pred HHHHHHHcCCcEE
Q 031238 87 GHSLAEKEGLSFL 99 (163)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (163)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4444555665544
No 226
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.39 E-value=0.36 Score=35.67 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=54.4
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEE-EEeeCCCCcccccCCH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIM-MAGNKSDLNHLRAVTE 84 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-vv~nK~Dl~~~~~~~~ 84 (163)
.+.+.|+|+++...... ....+..+|.+|++... +..++..+..++..+..... .+.+++ +|.|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 35688999987543222 23456789999999875 45566666666666655422 356655 899999831
Q ss_pred HHHHHHHHHcCCcEEE
Q 031238 85 EDGHSLAEKEGLSFLE 100 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~ 100 (163)
.....+.+..+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3345566666776554
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.34 E-value=0.72 Score=36.26 Aligned_cols=83 Identities=16% Similarity=0.025 Sum_probs=46.0
Q ss_pred EEEEEEeCCChhhHh-----hhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCC-e-EEEEeeCCCCccc
Q 031238 8 VKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI-V-IMMAGNKSDLNHL 79 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iivv~nK~Dl~~~ 79 (163)
+.+.|+||+|..... .+.. ..+..+|.+++|+|++..... ......+ .. .. | ..+|.||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~---~~-~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAF---KE-AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence 467899999975321 1110 112368999999999765421 1112222 22 34 5 7889999997421
Q ss_pred ccCCHHHHHHHHHHcCCcEEEe
Q 031238 80 RAVTEEDGHSLAEKEGLSFLET 101 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~ 101 (163)
......+....+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 112233455556554444
No 228
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.05 E-value=0.27 Score=35.58 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=51.6
Q ss_pred EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcc-----c
Q 031238 6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNH-----L 79 (163)
Q Consensus 6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~-----~ 79 (163)
..+.+.|+|+++...........+..+|.+|++...+. .+...+...+..+... +.+++ +|.|+.|... .
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccc
Confidence 34678999999864321111122336899999987653 3455555555555433 45666 8999987411 1
Q ss_pred ccC-CHHHHHHHHHHcCCcEEE
Q 031238 80 RAV-TEEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~ 100 (163)
..+ .......+.+..+.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 111 112234555667777654
No 229
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.58 E-value=0.33 Score=34.93 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=41.8
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHH---HHHHHhhcCCCCeEE-EEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSNIVIM-MAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~pii-vv~nK~Dl 76 (163)
.+.+.|+|+++..... ....+..+|.+|++...+. .++..+..+ +..+......+.+++ +|.|+.+.
T Consensus 111 ~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred CCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 3568999999864322 2344567999999998754 344444433 333332222356764 89999875
No 230
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.52 E-value=0.36 Score=34.88 Aligned_cols=64 Identities=6% Similarity=-0.082 Sum_probs=44.4
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
+.+.|+|+++... ......+..+|.+|++...+ ..++..+......+..... +.++.+|.|+.+
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLNL-FLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTTC-CCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHhc-cCCEEEEEeccc
Confidence 5678999987642 23445567799999999874 4456666666666555533 467889999984
No 231
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.11 E-value=0.85 Score=32.68 Aligned_cols=83 Identities=10% Similarity=-0.011 Sum_probs=51.3
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG 87 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 87 (163)
+.+.|+|+++... ......+..+|.+|++...+ ..++..+...+..+... + ..++-+|.|+.+..... ...
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~-~~~~~vv~N~~~~~~~~----~~~ 181 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-G-TKVLGVVVNRITTLGIE----MAK 181 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-T-CEEEEEEEEEECTTTHH----HHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc-C-CCeeEEEEccCCccccc----chH
Confidence 4678999997644 23344567899999998764 44566666655555544 2 24556899999853211 334
Q ss_pred HHHHHHcCCcEE
Q 031238 88 HSLAEKEGLSFL 99 (163)
Q Consensus 88 ~~~~~~~~~~~~ 99 (163)
..+.+..+.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (263)
T 1hyq_A 182 NEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHTTSCEE
T ss_pred HHHHHHhCCCeE
Confidence 445555666544
No 232
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.58 E-value=0.96 Score=31.75 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=43.8
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.+.++|+++... ......+..+|.+|++...+ ..++..+...+..+... + ...+-+|.|+.+..
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~-~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-G-LAILGFVLNRYGRS 176 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-T-CEEEEEEEEEETSC
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC-C-CceEEEEEecCCcc
Confidence 5678999987644 23345678899999998764 44566666666655544 2 24566899999853
No 233
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.83 E-value=0.35 Score=34.57 Aligned_cols=67 Identities=10% Similarity=-0.038 Sum_probs=45.2
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC------CCCeEEEEeeCCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD------SNIVIMMAGNKSDL 76 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------~~~piivv~nK~Dl 76 (163)
.+.+.++|+++.... .....+..+|.+|++.+. +..++..+..++..+..... ....+.+|.|+.+.
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 356889999985432 345567789999999976 44566666666655543321 12567889999884
No 234
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.71 E-value=2.3 Score=33.22 Aligned_cols=104 Identities=10% Similarity=0.149 Sum_probs=56.0
Q ss_pred EEEEEeCCChhhH----hh-hhhhhhcCCcEEEEEEECC--ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc--c-
Q 031238 9 KAQIWDTAGQERY----RA-ITSAYYRGAVGALLVYDIT--KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN--H- 78 (163)
Q Consensus 9 ~l~l~Dt~G~~~~----~~-~~~~~~~~~d~ii~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~--~- 78 (163)
.+.+||++|.... .. +...-+...+.+++ ++.. ..... .+..++ .. .+.|+++|.||.|+. +
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv-~la~aL---~~---~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI-DIAKAI---SM---MKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH-HHHHHH---HH---TTCEEEEEECCHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH-HHHHHH---Hh---cCCCeEEEEecCcccccCc
Confidence 4688999985321 11 11112344455554 7765 22111 122222 21 258999999999963 1
Q ss_pred ----cccCCHHH----HHHHHH----HcC---CcEEEecc--CCCCCHHHHHHHHHHHH
Q 031238 79 ----LRAVTEED----GHSLAE----KEG---LSFLETSA--LEATNVEKAFQTILTEI 120 (163)
Q Consensus 79 ----~~~~~~~~----~~~~~~----~~~---~~~~~~Sa--~~~~~i~~~~~~l~~~~ 120 (163)
-.....++ +..+.. +.+ -.++.+|+ ..+.|++++.+.+.+.+
T Consensus 193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 11222332 333331 222 25788999 66667999988887655
No 235
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=89.87 E-value=0.02 Score=44.18 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=48.4
Q ss_pred EEEEeCCChhhHhh--------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 10 AQIWDTAGQERYRA--------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 10 l~l~Dt~G~~~~~~--------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
+.++||||...... ....++ +..+.++++++..+...+..+.. +......+.|+++++||.|....
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccc
Confidence 57999999643211 112222 67899999998853211111110 11122346899999999997543
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccC
Q 031238 80 RAVTEEDGHSLAEKEGLSFLETSAL 104 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Sa~ 104 (163)
... ......+.+..|......++.
T Consensus 290 ~~~-~~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 290 TKL-EKADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp EEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred ccH-HHHHHHHHHhcCCccCCCCch
Confidence 322 223334445555544444443
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.67 E-value=0.72 Score=32.53 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=43.0
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+.+.|+|+++.... .....+..+|.+|++... +..++..+......+... + -..+.+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~-~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDL-G-IKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHH-T-CSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHc-C-CccEEEEEeCCC
Confidence 456889999876533 445567889999999987 445565555554433333 2 245778999987
No 237
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.42 E-value=2.8 Score=30.03 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=51.5
Q ss_pred EEEEEEeCCChhhHhhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeE-EEEeeCCCCcccccCCH
Q 031238 8 VKAQIWDTAGQERYRAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVI-MMAGNKSDLNHLRAVTE 84 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-ivv~nK~Dl~~~~~~~~ 84 (163)
+.+.|+|++|......+.. .....+|.+|++... +..++..+..++..+..... .+.++ -+|.|+.+.. ...
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 190 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence 5689999988543222211 122469999999876 44556666555555544332 23554 6789998631 234
Q ss_pred HHHHHHHHHcCCcEE
Q 031238 85 EDGHSLAEKEGLSFL 99 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (163)
+....+.+..+.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 455566666776655
No 238
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.51 E-value=1.4 Score=32.17 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=39.8
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH---HHHHHHhhcCCCCeE-EEEeeCCCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR---WLRELRDHADSNIVI-MMAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~pi-ivv~nK~Dl 76 (163)
+.+.|+|+|+...... ...+..+|.+|++...+. .++..+.. ++..+....+.+.++ -+|.|+.|.
T Consensus 155 yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp CSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 5688999988653322 233456999999997642 33444433 333333222335664 489999985
No 239
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=85.22 E-value=5.1 Score=29.04 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=49.8
Q ss_pred EEEEEEEeCCChhhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCe-EEEEeeCCCCcccccCC
Q 031238 7 TVKAQIWDTAGQERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV-IMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iivv~nK~Dl~~~~~~~ 83 (163)
.+.+.|+|++|......+. ......+|.+|++... +..++..+..++..+..... .+.+ +-+|.|+.+.. ..
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~ 192 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RE 192 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----TH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hH
Confidence 3678999998753222111 1223579999999875 44556555555555444322 2455 45788998631 12
Q ss_pred HHHHHHHHHHcCCcEE
Q 031238 84 EEDGHSLAEKEGLSFL 99 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (163)
.+....+.+..+.+++
T Consensus 193 ~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 193 DELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCcccc
Confidence 3344555566676654
No 240
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=84.39 E-value=0.086 Score=40.59 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=45.1
Q ss_pred EEEEeCCChhhHhh----h----hhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238 10 AQIWDTAGQERYRA----I----TSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL 79 (163)
Q Consensus 10 l~l~Dt~G~~~~~~----~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 79 (163)
+.++||||...... + ...+ .+..+.++++++......+..+.. +......+.|+++++||.|....
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc
Confidence 57999999743221 1 1111 356788999998743211111100 11122346899999999997543
Q ss_pred ccCCHHHHHHHHHHcCCcEE
Q 031238 80 RAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (163)
... ......+.+..|..+.
T Consensus 289 ~~~-~~~~~~~~~~~g~~l~ 307 (368)
T 3h2y_A 289 TKL-EKADELYKNHAGDLLS 307 (368)
T ss_dssp EEH-HHHHHHHHHHBTTTBC
T ss_pred ccH-HHHHHHHHHHhCCccC
Confidence 322 3333444444454333
No 241
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=83.43 E-value=1.6 Score=31.97 Aligned_cols=33 Identities=21% Similarity=0.084 Sum_probs=25.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
+.+.|+|+++.. .......+..+|.+|++...+
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 567899999875 334456788899999999875
No 242
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=82.49 E-value=2.6 Score=30.72 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=40.0
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDL 76 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl 76 (163)
+.+.|+|+|+...... .......+|.+|+|..... .+...+......+... +.+++ +|.|+.|.
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcC
Confidence 4578999998643211 1234457899999998753 2344454444444432 45655 89999985
No 243
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=79.91 E-value=4.6 Score=31.67 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=36.8
Q ss_pred EEEEEEEeCCChhhHh-hhhh-----hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCc
Q 031238 7 TVKAQIWDTAGQERYR-AITS-----AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLN 77 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~ 77 (163)
.+.+.|+||||..... .+.. .....++.+++|+|+......... ...+.. ..+ .-+|.||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~---~~~f~~----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT---AKAFNE----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH---HHHHHH----HSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH---HHHHhc----cCCCeEEEEecCCCC
Confidence 3568899999964321 1111 124468999999999854332222 122221 133 24689999963
No 244
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.75 E-value=0.8 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=13.6
Q ss_pred CCCeEEEEeeCCCCcc
Q 031238 63 SNIVIMMAGNKSDLNH 78 (163)
Q Consensus 63 ~~~piivv~nK~Dl~~ 78 (163)
.++|+|+|.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 4689999999999754
No 245
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=78.59 E-value=6.8 Score=30.17 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=35.5
Q ss_pred CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
..|.+++.||.|.. ..++...+.+ .-.++++|+..+.|++++.+.+++.+
T Consensus 249 ~~p~i~v~nKid~~-----~~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 249 YMPAIYVLNKIDSL-----SIEELELLYR--IPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EECEEEEEECGGGS-----CHHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEEeccccc-----CHHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHHc
Confidence 47999999999863 3344433322 23588999999999998877776654
No 246
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=76.77 E-value=5 Score=29.46 Aligned_cols=66 Identities=15% Similarity=-0.023 Sum_probs=40.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 77 (163)
+.+.|+|+|+...... .....+.+|++|+|...... +...+...+..+.... ...+-+|.|+.|..
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 4578999998643321 22345679999999987532 3444444444444332 23456788999863
No 247
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=76.64 E-value=16 Score=25.09 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=45.8
Q ss_pred EEEEEEeCCChhhHh----hhhhhhhcCC-cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCCccccc
Q 031238 8 VKAQIWDTAGQERYR----AITSAYYRGA-VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDLNHLRA 81 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~----~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~~~ 81 (163)
+.+.|+|++|..... .......+.. +.+|+|.... ..++.++...+..+.. .+.++ -+|.|+.|.. ..
T Consensus 109 yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~---~~~~i~gvvlN~~~~~--~~ 182 (224)
T 1byi_A 109 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH---AGLTLAGWVANDVTPP--GK 182 (224)
T ss_dssp CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH---TTCCEEEEEEECCSSC--CT
T ss_pred CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH---CCCcEEEEEEeCCCCc--hh
Confidence 567899998764311 1111222222 2477777763 3455565555555542 24554 4789999852 12
Q ss_pred CCHHHHHHHHHHcCCcEEE
Q 031238 82 VTEEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (163)
...+..+.+.+..+.+++.
T Consensus 183 ~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 183 RHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp THHHHHHHHHHHSSSCEEE
T ss_pred hHHHHHHHHHHHcCCCEEE
Confidence 2233344455556766553
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.04 E-value=12 Score=29.26 Aligned_cols=86 Identities=19% Similarity=0.075 Sum_probs=45.9
Q ss_pred EEEEEEeCCChhhHh--hhhh----hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 8 VKAQIWDTAGQERYR--AITS----AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~--~~~~----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+.+.|+||+|..... .+.. ...-.+|.+++|+|+.......+ ....+.... ...-+|.||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~---~a~~f~~~l---~i~GVIlTKlD~~~--- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKV---GVTGLVLTKLDGDA--- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH---HHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHH---HHHHHHhcC---CceEEEEeCcCCcc---
Confidence 457899999964321 1110 11225888999999875432222 122222111 12456889998531
Q ss_pred CCHHHHHHHHHHcCCcEEEecc
Q 031238 82 VTEEDGHSLAEKEGLSFLETSA 103 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa 103 (163)
. .-.........+.++.++..
T Consensus 252 ~-~g~alsi~~~~g~PI~flg~ 272 (425)
T 2ffh_A 252 R-GGAALSARHVTGKPIYFAGV 272 (425)
T ss_dssp S-CHHHHHHHHHHCCCEEEEEC
T ss_pred c-HHHHHHHHHHHCCCEEEEeC
Confidence 1 12334455566777666653
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.12 E-value=5.9 Score=29.81 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=49.6
Q ss_pred EEEEeCCChhhHhhh----hhh--hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238 10 AQIWDTAGQERYRAI----TSA--YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT 83 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 83 (163)
+.+.|++|....... ... ..-..|-.+++.|++......+ ....+.... + .-+++.||.|-.. +
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~---~~~~~~~~~--~-it~iilTKlD~~a-~--- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVE---QARQFNEAV--K-IDGIILTKLDADA-R--- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH---HHHHHHHHS--C-CCEEEEECGGGCS-C---
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHH---HHHHHHHhc--C-CCEEEEeCcCCcc-c---
Confidence 567999997432110 000 1124788899999876533222 222232221 1 2367889998521 1
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238 84 EEDGHSLAEKEGLSFLETSALEATNVEKA 112 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 112 (163)
.-.........+.++..++ +|++++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 1223445566788888877 56666543
No 250
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.95 E-value=20 Score=26.72 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=49.2
Q ss_pred EEEEEEeCCChhhHhh-hhh------hhh-----cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCC
Q 031238 8 VKAQIWDTAGQERYRA-ITS------AYY-----RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~-~~~------~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~ 74 (163)
+.+.|+||||...... +.. ..+ ..+|.+++|++++.. .+.+... ..+ .. ..+ .=+|.||.
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~-~~~---~~-~~~i~GvVltk~ 264 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA-EEF---SK-VADVSGIILTKM 264 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH-HHH---TT-TSCCCEEEEECG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH-HHH---hh-cCCCcEEEEeCC
Confidence 5688999999754321 100 011 247899999998743 2222221 122 22 222 34688999
Q ss_pred CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEK 111 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 111 (163)
|... + . -....+....++++..+.. |+++++
T Consensus 265 d~~~-~-~--g~~~~~~~~~~~Pi~~i~~--Ge~~~d 295 (320)
T 1zu4_A 265 DSTS-K-G--GIGLAIKELLNIPIKMIGV--GEKVDD 295 (320)
T ss_dssp GGCS-C-T--THHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred CCCC-c-h--hHHHHHHHHHCcCEEEEeC--CCCccc
Confidence 8532 1 1 2444556667887766643 444443
No 251
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=71.40 E-value=3.4 Score=30.10 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=36.6
Q ss_pred hcCCcEEEEEEECC-ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--HHHHHHHHHHcCCcEEE
Q 031238 29 YRGAVGALLVYDIT-KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--EEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 29 ~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 100 (163)
+..+++.++++|.. .+-.-.+ ...+..+. .. .++|+|.+|.|.....+.. ...+.......++.++.
T Consensus 109 iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 34578899999865 3322112 22233332 22 8999999999975432221 22333344555666553
No 252
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=70.86 E-value=6.6 Score=32.16 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=35.1
Q ss_pred EEEEEeCCChh-------------hHhhhhhhhhcCC-cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 9 KAQIWDTAGQE-------------RYRAITSAYYRGA-VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 9 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.+.+.|.||.. ....+...+++.. .+++++.+.+....-.....+...+ .+.+.+.|+|+||.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v---~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV---DPEGDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH---CSSCCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH---hhcCCceEEEecch
Confidence 37789998632 2233455555554 4555555544221111222333333 33467899999999
Q ss_pred CCc
Q 031238 75 DLN 77 (163)
Q Consensus 75 Dl~ 77 (163)
|+.
T Consensus 225 Dlv 227 (608)
T 3szr_A 225 DLV 227 (608)
T ss_dssp GGS
T ss_pred hhc
Confidence 974
No 253
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=68.72 E-value=9.2 Score=28.15 Aligned_cols=65 Identities=17% Similarity=-0.017 Sum_probs=37.7
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCc
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLN 77 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~ 77 (163)
+.+.|+|+|+...... .......+|.+|+|...... +...+...+..+... +.+ +-+|.|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA---GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT---TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC---CCCeEEEEEeCCccC
Confidence 4578999998643211 12234679999999987532 233344444444333 233 33678999853
No 254
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=68.71 E-value=17 Score=26.75 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=45.8
Q ss_pred EEEEEEeCCChhhHh--hhhh----hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 8 VKAQIWDTAGQERYR--AITS----AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~--~~~~----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+.+.|+||||..... .+.. ...-.+|.+++|+|+..... .+. ....+.... ...-+|.||.|...
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~--~~~-~~~~~~~~~---~i~givlnk~d~~~--- 251 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--ALS-VARAFDEKV---GVTGLVLTKLDGDA--- 251 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HHH-HHHHHHHHT---CCCEEEEECGGGCS---
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH--HHH-HHHHHhhcC---CCCEEEEECCCCCc---
Confidence 468899999763221 1111 11124788899999874321 111 112222111 12346899998532
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238 82 VTEEDGHSLAEKEGLSFLETSALEATNVEK 111 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 111 (163)
..-.........++++..+.. |+++++
T Consensus 252 -~~g~~~~~~~~~~~pi~~i~~--g~~~~d 278 (295)
T 1ls1_A 252 -RGGAALSARHVTGKPIYFAGV--SEKPEG 278 (295)
T ss_dssp -SCHHHHHHHHHHCCCEEEEC--------C
T ss_pred -cHHHHHHHHHHHCcCEEEEeC--CCCccc
Confidence 122444566677888877664 444443
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=67.77 E-value=17 Score=27.03 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=48.8
Q ss_pred EEEEEEeCCChhhHhh-----hh--hhhh-----cCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 8 VKAQIWDTAGQERYRA-----IT--SAYY-----RGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~-----~~--~~~~-----~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
+.+.+.||+|...... +. ...+ ...+.+++|.|++... .+..+ ..+.... + ..-+|.||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~~--~-i~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEAV--N-VTGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHHS--C-CCEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhcC--C-CCEEEEeCC
Confidence 3578999999622111 10 1111 2478899999987442 22222 2222221 2 234678999
Q ss_pred CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238 75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEK 111 (163)
Q Consensus 75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 111 (163)
|-.. . .-.+.......+.++.++.. |+.+++
T Consensus 260 D~~~--~--gG~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 260 DGTA--K--GGITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp GGCS--C--TTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred CCcc--c--hHHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 9532 1 12255666777888777755 444443
No 256
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=67.70 E-value=12 Score=28.55 Aligned_cols=34 Identities=9% Similarity=-0.183 Sum_probs=24.7
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
.+.+.|+|+|+... ......+..+|.+|++...+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~ 280 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPA 280 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSS
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 35689999987653 23344567899999999764
No 257
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.42 E-value=9.7 Score=30.57 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=47.6
Q ss_pred EEEEEeCCChhhH--hhh--hhhh---h-----cCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 9 KAQIWDTAGQERY--RAI--TSAY---Y-----RGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 9 ~l~l~Dt~G~~~~--~~~--~~~~---~-----~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+.|+||+|.... ..+ .... . ...+-+++|.|++.... +.. ...+.... ++. .+|+||.|
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~~--~it-gvIlTKLD 449 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEAV--GLT-GITLTKLD 449 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHHT--CCS-EEEEECGG
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhhc--CCC-EEEEEcCC
Confidence 4778999997321 111 1111 1 12567889999876533 322 22222221 222 46899998
Q ss_pred CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238 76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA 112 (163)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 112 (163)
-. ... -.+..+....++++.++. +|++++++
T Consensus 450 ~t--akg--G~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 GT--AKG--GVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp GC--SCC--THHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred Cc--ccc--cHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 42 222 224445566677776654 35555543
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=66.51 E-value=9.6 Score=29.95 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=37.5
Q ss_pred EEEEeCCChhh--Hhhhh--------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 10 AQIWDTAGQER--YRAIT--------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 10 l~l~Dt~G~~~--~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
..+||..|.+. ....+ ..++...++.++|+|.++. +.+....|+..+... +.+++.+-..++
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 35789988733 23222 5566678898999999987 444455666555443 345555443333
No 259
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=61.37 E-value=26 Score=23.53 Aligned_cols=61 Identities=5% Similarity=-0.079 Sum_probs=37.5
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHh---hcCCCCeEEEEeeCC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD---HADSNIVIMMAGNKS 74 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piivv~nK~ 74 (163)
+.+.++|..... ...+..+|++|+........-...++.|+..+.. ....++++.++++--
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 345566654322 2346679999999988754333455666666543 122468888888843
No 260
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=58.08 E-value=36 Score=22.95 Aligned_cols=64 Identities=5% Similarity=-0.028 Sum_probs=37.6
Q ss_pred EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh--------cCCCCeEEEEeeCC
Q 031238 10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH--------ADSNIVIMMAGNKS 74 (163)
Q Consensus 10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~~piivv~nK~ 74 (163)
+.+.|.....+.... ...+..+|++|+.+.+-...--..++.|+..+... .-.+++++++.+--
T Consensus 31 v~v~dL~~~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 31 VTWHPLVADFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp EEEEECCTTCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred EEEEECCCcccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 445555543333333 34578899999999987543223456677665331 11467887776643
No 261
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=56.41 E-value=18 Score=25.01 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=33.9
Q ss_pred hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCC
Q 031238 19 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSD 75 (163)
Q Consensus 19 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 75 (163)
.......+..+++++.+|+++.-.-..+ ....| +|.... ..++|||+|--..+
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s--~~v~w--EIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANS--RALRE--EMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCC--HHHHH--HHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCcccc--chhHH--HHHHHHHhcCCcEEEEECCcc
Confidence 3445566777999999999987654433 12344 343333 35799988877644
No 262
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=55.88 E-value=14 Score=25.44 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=31.1
Q ss_pred hhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC-CCCeEEEEeeCC
Q 031238 25 TSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD-SNIVIMMAGNKS 74 (163)
Q Consensus 25 ~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~piivv~nK~ 74 (163)
+...+..+|++|++....+. ..+.+..+|+........ .++|+.+++.-.
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 34568899999999877653 445555566532111111 478998887643
No 263
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=55.76 E-value=16 Score=25.14 Aligned_cols=71 Identities=6% Similarity=-0.142 Sum_probs=40.7
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCc
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (163)
...+..+|++|++....+..---.++.|+..+... .-.++|+.++++---... ........+......+..
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~il~~lg~~ 141 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG-GARAQNHLRQSLVFLDAY 141 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC-SHHHHHHHHHHHHHTTCE
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc-cHHHHHHHHHHHHHcCCE
Confidence 34578899999999887643222345555555441 114789998887532111 111234455566666653
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=55.26 E-value=21 Score=26.25 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=45.8
Q ss_pred EEEEEEeCCChhhHhh--h--hhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238 8 VKAQIWDTAGQERYRA--I--TSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA 81 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 81 (163)
+.+.|.||+|...... + ....+. ..+.+++|+|++.. ..++..+...+... + ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l---~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV---P-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS---C-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC---C-CCEEEEeCCCcccc--
Confidence 3578999999764321 1 112232 36788999988753 22333333222211 1 22456799996421
Q ss_pred CCHHHHHHHHHHcCCcEEEec
Q 031238 82 VTEEDGHSLAEKEGLSFLETS 102 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~S 102 (163)
...........++++..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 1244456666677665544
No 265
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=52.92 E-value=24 Score=26.64 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=28.5
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL 51 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 51 (163)
.+.+.|+|++... .......+..+|.+|++...+ ..++..+.
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~ 194 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFG 194 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHH
Confidence 4678999999754 333445667799999999764 44444433
No 266
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=52.70 E-value=16 Score=25.05 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=39.4
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCc
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (163)
...+..+|++|++....+..--..++.|+..+....-.++|++++++- .............+.+....+..
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 345778999999998876432234455555554322257898888873 21111111112245556666653
No 267
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=51.68 E-value=23 Score=28.47 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=32.8
Q ss_pred CCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEecc---CCCCCHHHHHHHHHH
Q 031238 63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA---LEATNVEKAFQTILT 118 (163)
Q Consensus 63 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~~~~i~~~~~~l~~ 118 (163)
.++|++|.+|+..... +-..+.+++++++.|+.+. +|. +=|+|-.++-+.+++
T Consensus 359 fGvpvVVaiN~F~tDT--~aEi~~v~~~~~~~G~~~~-~s~~wa~GG~G~~~LA~~Vv~ 414 (543)
T 3do6_A 359 FNLPVVVALNRFSTDT--EKEIAYVVKECEKLGVRVA-VSEVFKKGSEGGVELAKAVAE 414 (543)
T ss_dssp TTCCEEEEEECCTTCC--HHHHHHHHHHHHTTTCEEE-EECHHHHGGGGSHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCC--HHHHHHHHHHHHHcCCCEE-EechhhccchhHHHHHHHHHH
Confidence 4799999999986432 2224556788888888654 343 334455555444444
No 268
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=51.55 E-value=71 Score=23.62 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=48.1
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEE-EEeeCCCCcccccCCHH
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIM-MAGNKSDLNHLRAVTEE 85 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-vv~nK~Dl~~~~~~~~~ 85 (163)
+.+.++|+++......+ ...+..+|.+|++... +..++..+..++..+..... .+.++. +|.|..+. ..
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-------~~ 234 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------TD 234 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------CH
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc-------hh
Confidence 45677887765432222 2346679999888754 45566666666666655433 234443 56676553 23
Q ss_pred HHHHHHHHcCCcEE
Q 031238 86 DGHSLAEKEGLSFL 99 (163)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (163)
+..++++..+.+++
T Consensus 235 ~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 235 EVDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred HHHHHHHHhCCeEE
Confidence 34566677776654
No 269
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=51.38 E-value=55 Score=22.36 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=29.0
Q ss_pred EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHH
Q 031238 9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL 57 (163)
Q Consensus 9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 57 (163)
.+.+.|....++..... ..+..+|++|+.+..-...---.++.|+..+
T Consensus 49 ~v~~~dL~~~~d~~~~~-~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 49 DVRIVRADSDYDVKAEV-QNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp EEEEEESSSCCCHHHHH-HHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred EEEEEeCCccccHHHHH-HHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 45666665433344333 4577899999999987642222345666654
No 270
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=50.23 E-value=11 Score=25.59 Aligned_cols=70 Identities=11% Similarity=-0.025 Sum_probs=39.3
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH-HHHHHHHHHcCCcE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE-EDGHSLAEKEGLSF 98 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 98 (163)
..+..+|++|++....+..--..++.|+..+......++|++++++ ..-..... .. ...+.+....|+.+
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~~~-a~~~~l~~~l~~~g~~~ 135 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAHVL-ALDYGLRPVLHSMGVRH 135 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGGGG-HHHHTHHHHHHTTTCSE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcchhh-HHHHHHHHHHHHcCCEe
Confidence 3477899999999887643222344555444322224689999888 33221111 12 23555666667654
No 271
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=48.67 E-value=28 Score=23.33 Aligned_cols=74 Identities=11% Similarity=-0.072 Sum_probs=40.9
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 100 (163)
..+..+|++|+........--..++.|+..+... ...++++.++++--...............+....|+.++.
T Consensus 66 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 66 DDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 3467899999999886543222344555444211 1246788887775432111112234555666667765543
No 272
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=47.80 E-value=9.8 Score=25.30 Aligned_cols=72 Identities=6% Similarity=-0.120 Sum_probs=40.4
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
..+..+|++|+.....+..--..++.|+..+......++|+.++++----.. ........+......++.++
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEe
Confidence 4577899999999887643223344444433221124689988886432211 11123455666677777543
No 273
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=46.94 E-value=20 Score=27.25 Aligned_cols=33 Identities=6% Similarity=-0.157 Sum_probs=23.9
Q ss_pred EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238 8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
+.+.|+|+|+.-.. .....+..+|.+|++...+
T Consensus 245 yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 245 YDFILVDSGPHLDA--FLKNALASANILFTPLPPA 277 (398)
T ss_dssp CSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCS
T ss_pred CCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 56899999876532 2334566899999999764
No 274
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=46.80 E-value=34 Score=22.87 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=39.3
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
..+..+|++|+........--..++.|+..+... ...++++.++++--...............+....|+.++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4577899999999886542222344555444321 124678888887543211111122344555556666443
No 275
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=45.35 E-value=36 Score=22.83 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=23.8
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG 71 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 71 (163)
..++.||++|.++|...+++--...--+. . . .++|++++-
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA--~--a-lgKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFM--R--A-MHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHH--H--H-TTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhH--h--h-CCCeEEEEE
Confidence 34788999999999765443222211111 1 1 268998874
No 276
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=42.60 E-value=30 Score=23.55 Aligned_cols=48 Identities=4% Similarity=-0.098 Sum_probs=32.0
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-------------cCCCCeEEEEeeCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-------------ADSNIVIMMAGNKS 74 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piivv~nK~ 74 (163)
..+..+|++|+++..-...--..++.|+..+... .-.+++++++.+--
T Consensus 69 ~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 69 DLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 3477899999999987643333467777777431 11467888877753
No 277
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=42.42 E-value=12 Score=30.18 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 52 RWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 52 ~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
++...+......++|++|.+|+..... +-..+.+++++++.|+.+..+=++=|+|-.++-+.+++.+
T Consensus 362 NL~kHien~~~fGvpvVVaiN~F~tDT--~aEi~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~ 428 (557)
T 3pzx_A 362 NLEKHIENIGKFGVPAVVAINAFPTDT--EAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTL 428 (557)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCTTCC--HHHHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCCC--HHHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHH
Confidence 344444444445899999999986421 1123445666666666544333444556666655555544
No 278
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=42.15 E-value=39 Score=22.97 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=40.2
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcE
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSF 98 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
...+..+|++|++....+..---.++.|+..+... .-.++|+.++++---... ........+.+....+..+
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g-g~~a~~~Lr~~l~~lg~~v 141 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG-GARCQYHLRQILVFLDAMV 141 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc-hHHHHHHHHHHHHHCCCEE
Confidence 34578899999999876643222344555544431 114789988887432111 1112345555666666543
No 279
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=41.85 E-value=26 Score=21.73 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=38.4
Q ss_pred hhcCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 28 YYRGAVGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.+..+|++|++.......-... +..++..+... ..++++.++++--.. ..-............|..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~-l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPK-LKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGG-CSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhh-cCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 3668999999987753221112 55555555432 246899888874321 11124455566666676544
No 280
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=41.83 E-value=15 Score=24.84 Aligned_cols=71 Identities=8% Similarity=-0.158 Sum_probs=40.2
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSF 98 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
..+..+|++|+++..-...--..++.|+..+... ...++|++++++--.... ........+.+....|+.+
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~ 141 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHP 141 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEE
Confidence 3577899999998776542223456666666532 124689988888632111 1112344555666666543
No 281
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=40.50 E-value=7.9 Score=27.76 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=20.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 32 AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 32 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
-.|+|+||+...+...+.+.+. ......+..+++|+.-.+
T Consensus 103 iggII~~f~~p~~~~~~~i~~~----~~~~~~dg~~v~Vg~~~~ 142 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELLHQF----MIAAHRNTFVVLVNVNEE 142 (233)
T ss_dssp EEEEEEEECHHHHCGGGTHHHH----HHHSCTTCEEEEEECCTT
T ss_pred cceEEEEEeCCCcchHHHHHHH----hccCCCCceEEEEecCCc
Confidence 3789999976554433333322 222233455555654443
No 282
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=40.38 E-value=29 Score=23.55 Aligned_cols=70 Identities=11% Similarity=-0.024 Sum_probs=42.1
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh----------cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcC
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH----------ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG 95 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 95 (163)
...+..+|++|++....+..--..++.|+..+... .-.++|++++.+--.. . ........+.+....|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHcC
Confidence 34578899999999876643333456666666531 1146888888776432 1 1222355666667777
Q ss_pred Cc
Q 031238 96 LS 97 (163)
Q Consensus 96 ~~ 97 (163)
+.
T Consensus 140 ~~ 141 (192)
T 3fvw_A 140 MH 141 (192)
T ss_dssp CE
T ss_pred Ce
Confidence 64
No 283
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=39.91 E-value=30 Score=23.14 Aligned_cols=70 Identities=4% Similarity=-0.082 Sum_probs=39.4
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
...+..+|++|++.......--..++.|+..+.... .++|++++.+ -.... .......+.+....|+.++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l-~gK~~~~~~~-G~~~~--~~~~~~l~~~l~~~G~~~~ 148 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEW-HGKPALVVSY-GGHGG--SKCNDQLQEVLHGLKMNVI 148 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTT-TTCEEEEEEE-ETTTT--HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhc-CCCEEEEEEe-CCcch--hhHHHHHHHHHHHCCCEEc
Confidence 345788999999998876432234555665543222 3678877755 22111 1123345556666676543
No 284
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=38.86 E-value=30 Score=26.12 Aligned_cols=49 Identities=12% Similarity=-0.037 Sum_probs=30.3
Q ss_pred EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHH
Q 031238 7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR 58 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 58 (163)
.+.+.++|+|..... .....+..+|.+|+|... ++.+...+..+...+.
T Consensus 259 ~yD~VIID~p~~~~~--~~~~~l~~aD~vivv~~~-~~~s~~~l~~~~~~l~ 307 (373)
T 3fkq_A 259 NYDEIIVDLPFSLEI--EKLKLLSKAWRIIVVNDG-SQLSNYKFMRAYESVV 307 (373)
T ss_dssp CCSEEEEECCCCCCH--HHHHHHTTCSEEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEecC-CchHHHHHHHHHHHHH
Confidence 467899999854322 334567889999999865 4444334444444443
No 285
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=38.46 E-value=33 Score=24.07 Aligned_cols=70 Identities=4% Similarity=-0.073 Sum_probs=40.8
Q ss_pred hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 28 YYRGAVGALLVYDITKRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.+..+|++|+....-...--..++.|+..+... ...++|++++++--.. . ..........+....|+.++
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeee
Confidence 477899999999887643223445566555321 1246788887765321 1 11234456666777787543
No 286
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=37.34 E-value=48 Score=22.04 Aligned_cols=73 Identities=5% Similarity=-0.082 Sum_probs=38.4
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 100 (163)
..+..+|++|+........--..++.|+..+... ...++|+.++++--.. ................+|+.++.
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 4577899999998876532222344444443221 1246788877775432 11111223344455555655443
No 287
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=36.28 E-value=30 Score=22.84 Aligned_cols=73 Identities=8% Similarity=-0.105 Sum_probs=38.9
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-----------cCCCCeEEEEeeCCCCcc-cccCCHHHHHHHHHHc
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-----------ADSNIVIMMAGNKSDLNH-LRAVTEEDGHSLAEKE 94 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-----------~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~ 94 (163)
..+..+|++|+.+..-...--..++.|+..+... ...+++++++.+--.... .........+.++...
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 3577899999999887542222344455443211 012578888877432110 0111133445566666
Q ss_pred CCcEE
Q 031238 95 GLSFL 99 (163)
Q Consensus 95 ~~~~~ 99 (163)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 77544
No 288
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=35.89 E-value=38 Score=23.01 Aligned_cols=74 Identities=11% Similarity=-0.047 Sum_probs=39.4
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEE
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLE 100 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 100 (163)
..+..+|++|+........--..++.|+..+... ...++++.++++--...............+....++.++.
T Consensus 74 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 74 ADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 4567899999999876532222344555544221 1246788777774322111112234455566666665443
No 289
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.32 E-value=69 Score=18.82 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238 49 NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120 (163)
Q Consensus 49 ~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 120 (163)
+++..+..+. ..++|++++.|-... -...+.++.+++.|..|-.+-+.+ -+++.+.+.+.+
T Consensus 39 dirdiiksmk---dngkplvvfvngasq-----ndvnefqneakkegvsydvlkstd---peeltqrvrefl 99 (112)
T 2lnd_A 39 DIRDIIKSMK---DNGKPLVVFVNGASQ-----NDVNEFQNEAKKEGVSYDVLKSTD---PEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHT---TCCSCEEEEECSCCH-----HHHHHHHHHHHHHTCEEEEEECCC---HHHHHHHHHHHH
T ss_pred hHHHHHHHHH---hcCCeEEEEecCccc-----ccHHHHHHHHHhcCcchhhhccCC---HHHHHHHHHHHH
Confidence 4444454443 247899999987743 134667777888888776554443 566666665554
No 290
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=35.05 E-value=46 Score=20.78 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=37.8
Q ss_pred hhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcE
Q 031238 28 YYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSF 98 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 98 (163)
.+...|++|+........... .+..++..+... ..++++.++++--.. . ...........+..|+.+
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~~-~--~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSYGWG-D--GKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEESSS-C--SHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEecCCC-C--ChHHHHHHHHHHHCCCEE
Confidence 356889999998765422111 344555555443 346888888874321 1 112345566666667643
No 291
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=34.56 E-value=30 Score=26.80 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=26.1
Q ss_pred CCeEEEEeeCCC--CcccccCCHHHHHHHHHH--cCCcEEEeccCC
Q 031238 64 NIVIMMAGNKSD--LNHLRAVTEEDGHSLAEK--EGLSFLETSALE 105 (163)
Q Consensus 64 ~~piivv~nK~D--l~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 105 (163)
.+|+++++|+.+ +.+....-...+.+++.. .+.+++.+||..
T Consensus 222 ~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~ 267 (396)
T 2ohf_A 222 SKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGAL 267 (396)
T ss_dssp GSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHH
T ss_pred CCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHH
Confidence 489999999974 321111112345555554 357899999875
No 292
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=33.23 E-value=45 Score=22.07 Aligned_cols=40 Identities=8% Similarity=-0.164 Sum_probs=24.1
Q ss_pred hhhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 27 AYYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
..++.||++|.++|..++++ .-++-.. . . .++|++++...
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA----~--A-~gkPVv~~~~~ 115 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYA----L--S-QGKYVLLVIPD 115 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHH----H--H-TTCEEEEEECG
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHH----H--H-CCCeEEEEEcC
Confidence 34788999999998654333 2222211 1 1 26899887644
No 293
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=31.78 E-value=38 Score=24.19 Aligned_cols=70 Identities=4% Similarity=-0.135 Sum_probs=40.4
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-----cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCc
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-----ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (163)
...+..+|++|++....+..---.++.|+..+... .-.++|+.++++---. . ........+.+....++.
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-g-g~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-Q-SFNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-C-CCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-c-HHHHHHHHHHHHHHCCCE
Confidence 34577899999999887643223445555555322 1146898888874221 1 111234555566666653
No 294
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=31.56 E-value=62 Score=21.43 Aligned_cols=42 Identities=7% Similarity=-0.152 Sum_probs=26.2
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
..++.||++|..++..+....-++-... . .++|++++.+..+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~----a---lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAV----A---LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHH----H---TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHH----H---CCCEEEEEEcCCC
Confidence 4588999999988744544333332211 1 2689998866653
No 295
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=30.77 E-value=60 Score=21.58 Aligned_cols=42 Identities=10% Similarity=-0.092 Sum_probs=25.3
Q ss_pred hhhhcCCcEEEEEEEC-----CChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 26 SAYYRGAVGALLVYDI-----TKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~-----~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
...+++||++|.++|. .|..+.-++-.. . . .++|++++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA----~--A-lgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCA----A--A-LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHH----H--H-TTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHH----H--H-CCCEEEEEEcCc
Confidence 3557889999999982 243332233221 1 1 268998887653
No 296
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=30.77 E-value=97 Score=19.14 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=38.8
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcC-C-cEEEeccCCCCCH
Q 031238 32 AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-L-SFLETSALEATNV 109 (163)
Q Consensus 32 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~~i 109 (163)
.|++|+-++..+...++- +..++...+ ..|+|++....| .+....... .| + .|+. ...+.
T Consensus 49 ~dlvi~D~~l~~~~g~~~----~~~l~~~~~-~~~ii~~s~~~~--------~~~~~~~~~-~g~~~~~l~----KP~~~ 110 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGTEV----IQKARLISP-NSVYLMLTGNQD--------LTTAMEAVN-EGQVFRFLN----KPCQM 110 (151)
T ss_dssp CSEEEEESCCSSSCHHHH----HHHHHHHCS-SCEEEEEECGGG--------HHHHHHHHH-HTCCSEEEE----SSCCH
T ss_pred CCEEEEeCCCCCCcHHHH----HHHHHhcCC-CcEEEEEECCCC--------HHHHHHHHH-cCCeeEEEc----CCCCH
Confidence 377666665554333322 233333333 578777665443 222222222 34 4 4544 35577
Q ss_pred HHHHHHHHHHHHHHHhH
Q 031238 110 EKAFQTILTEIYHIISK 126 (163)
Q Consensus 110 ~~~~~~l~~~~~~~~~~ 126 (163)
+++...+...+......
T Consensus 111 ~~L~~~i~~~l~~~~~~ 127 (151)
T 3kcn_A 111 SDIKAAINAGIKQYDLV 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776665554433
No 297
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=30.25 E-value=57 Score=24.73 Aligned_cols=66 Identities=8% Similarity=-0.141 Sum_probs=40.0
Q ss_pred hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHHHHHHHHH-cCCc
Q 031238 28 YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLS 97 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~ 97 (163)
.+..+|++|+........-...++.++..+..... .++++.++++--.. . -..+....+... .|+.
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g~~-~---~a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFGWS-N---RAVPDIVAELRDGCKAD 371 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEESSS-C---CHHHHHHHHHHHTSCCB
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEecCCC-c---hhHHHHHHHHHhhcCcE
Confidence 46789999999877654323335556665544333 46888888875322 1 134566667777 6653
No 298
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=30.19 E-value=78 Score=21.43 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=13.5
Q ss_pred HhhhhhhhhcCCcEEEEEEECC
Q 031238 21 YRAITSAYYRGAVGALLVYDIT 42 (163)
Q Consensus 21 ~~~~~~~~~~~~d~ii~v~d~~ 42 (163)
|....+..+.++|++|.+||-.
T Consensus 120 ~~~rn~~mvd~sD~liavyDg~ 141 (181)
T 2nx2_A 120 FKQKNQFFIDKSDGLLLLYDPE 141 (181)
T ss_dssp HHHHHHHHHHHSSEEEEECCTT
T ss_pred HHHHHHHHHHHCCEEEEEEcCC
Confidence 3344445566777777777754
No 299
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=30.16 E-value=70 Score=21.33 Aligned_cols=41 Identities=7% Similarity=-0.109 Sum_probs=24.3
Q ss_pred hhhcCCcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 27 AYYRGAVGALLVYDITK--RQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
..++.||++|.++|... ..+.-++-..+ . .++|++++-+-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~----a---~gkPVi~~~~D~ 107 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAY----A---KGIPVVALYTDS 107 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHH----H---TTCCEEEECCCG
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHH----H---CCCEEEEEEcCc
Confidence 34788999999998653 33322332211 1 268987765543
No 300
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=29.89 E-value=49 Score=21.83 Aligned_cols=46 Identities=9% Similarity=-0.088 Sum_probs=27.3
Q ss_pred hhcCCcEEEEEEECC-ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238 28 YYRGAVGALLVYDIT-KRQTFDNVLRWLRELRDHADSNIVIMMAGNK 73 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 73 (163)
.+...|.+|+.+..- ....-..+..++..+......++++.++++-
T Consensus 42 ~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~g 88 (175)
T 1ag9_A 42 DLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCG 88 (175)
T ss_dssp HHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEEC
T ss_pred HhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEEC
Confidence 356789999988763 3222223444555544322346889888884
No 301
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=29.88 E-value=66 Score=23.16 Aligned_cols=46 Identities=4% Similarity=-0.034 Sum_probs=31.2
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-------------cCCCCeEEEEeeCC
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDH-------------ADSNIVIMMAGNKS 74 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piivv~nK~ 74 (163)
+..+|+||+.+.+-...--..++.|+..+... ...+++++++.+--
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 77899999999987643223457777776432 11468888887754
No 302
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.70 E-value=1.1e+02 Score=21.40 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=29.0
Q ss_pred EEEEEEEeCCChhhH-hhhhhhh-hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 7 TVKAQIWDTAGQERY-RAITSAY-YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 7 ~~~l~l~Dt~G~~~~-~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
.+.+.+.++.+.... ....... -+++|++|++ ....... . +..+.. .++|+|++....+
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~~~~---~---~~~l~~---~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 40 QYHLVVTPHIHAKDSMVPIRYILETGSADGVIIS-KIEPNDP---R---VRFMTE---RNMPFVTHGRSDM 100 (288)
T ss_dssp SCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE-SCCTTCH---H---HHHHHH---TTCCEEEESCCCS
T ss_pred CCEEEEecCCcchhHHHHHHHHHHcCCccEEEEe-cCCCCcH---H---HHHHhh---CCCCEEEECCcCC
Confidence 345666665543222 2222222 2689998875 3322111 1 122221 3689988877654
No 303
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=28.66 E-value=70 Score=21.80 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=31.6
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---------cCCCCeEEEEeeCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---------ADSNIVIMMAGNKS 74 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~~~~~piivv~nK~ 74 (163)
..+..+|++|+.+..-...--..++.|+..+... .-.+++++++.+--
T Consensus 54 ~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G 110 (192)
T 3f2v_A 54 KLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLG 110 (192)
T ss_dssp HHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEES
T ss_pred HHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCC
Confidence 4578899999999987643223457787776432 11467887776643
No 304
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=27.32 E-value=85 Score=20.41 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=40.5
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
+..+|++|+........ +. ...++..+......++++.+++|- +- ..-....+.+.....|+.++
T Consensus 54 ~~~~d~ii~Gspty~g~-~p-~~~~l~~l~~~~~~~k~va~fgs~-g~---~~~a~~~l~~~l~~~G~~~v 118 (159)
T 3fni_A 54 VGRCTGLVIGMSPAASA-AS-IQGALSTILGSVNEKQAVGIFETG-GG---DDEPIDPLLSKFRNLGLTTA 118 (159)
T ss_dssp HHTEEEEEEECCBTTSH-HH-HHHHHHHHHHHCCTTSEEEEECCS-SS---CBCCHHHHHHHHHHTTCEES
T ss_pred HHhCCEEEEEcCcCCCC-cc-HHHHHHHHHhhcccCCEEEEEEcC-CC---CcHHHHHHHHHHHHCCCEEe
Confidence 45689998887766543 44 345555555444457899999875 22 12245666777777787554
No 305
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=26.83 E-value=54 Score=18.61 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=7.5
Q ss_pred CCCcccCccCC
Q 031238 153 SPSVKKGCCST 163 (163)
Q Consensus 153 ~~~~~~~~c~~ 163 (163)
...+.+-||.|
T Consensus 16 ~~~k~KpCCaC 26 (69)
T 1u96_A 16 CEDKPKPCCVC 26 (69)
T ss_dssp CCCCCCCCTTS
T ss_pred CCCCCCcCeeC
Confidence 33456789988
No 306
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=26.38 E-value=44 Score=24.95 Aligned_cols=52 Identities=4% Similarity=-0.043 Sum_probs=34.7
Q ss_pred hcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238 60 HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118 (163)
Q Consensus 60 ~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 118 (163)
+...+.|+| |++|-|.. .+...+.+++.+++++.++..+...+..+..++..
T Consensus 76 ~l~~~~P~I-Iltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 76 LCRPETPAI-IVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp HCCTTCCCE-EECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCEE-EEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHH
Confidence 333456764 66777653 34566788888999999888887666666555443
No 307
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=32.28 E-value=14 Score=25.43 Aligned_cols=48 Identities=6% Similarity=-0.101 Sum_probs=28.0
Q ss_pred hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---cCCCCeEEEEeeC
Q 031238 26 SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---ADSNIVIMMAGNK 73 (163)
Q Consensus 26 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piivv~nK 73 (163)
...+..+|++|++....+..--..++.|+..+... .-.++|+.++++-
T Consensus 68 ~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 34577899999998776542222234444444321 1136788877763
No 308
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=25.89 E-value=63 Score=20.93 Aligned_cols=71 Identities=7% Similarity=-0.115 Sum_probs=37.9
Q ss_pred hhcCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc--cccCCHHHHHHHHHHcCCcE
Q 031238 28 YYRGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH--LRAVTEEDGHSLAEKEGLSF 98 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 98 (163)
.+...|.+|+++.... ...-..+..++..+......++++.++++---... ...-............|..+
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~ 116 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKT 116 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEE
Confidence 3567899999988743 22212334444444332224689998888532100 01112345566666667643
No 309
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=25.42 E-value=2e+02 Score=20.99 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=43.8
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEec
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETS 102 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 102 (163)
-.++|+++++-....+.+-+.+..++..+.+..+ .|++ +-|--.. ....++.+...++++..++--+.-|
T Consensus 97 ~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~--lPii-lYn~P~~-tg~~l~~~~~~~La~~pnIvgiKds 166 (300)
T 3eb2_A 97 KLGADGILAILEAYFPLKDAQIESYFRAIADAVE--IPVV-IYTNPQF-QRSDLTLDVIARLAEHPRIRYIKDA 166 (300)
T ss_dssp HHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCS--SCEE-EEECTTT-CSSCCCHHHHHHHHTSTTEEEEEEC
T ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCC--CCEE-EEECccc-cCCCCCHHHHHHHHcCCCEEEEEcC
Confidence 3479999998877766677788888888876653 7875 4553322 1234566666666543333334433
No 310
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=25.15 E-value=1.1e+02 Score=20.21 Aligned_cols=44 Identities=5% Similarity=-0.104 Sum_probs=29.1
Q ss_pred hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 28 YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
.+...|.+++.+.+-...-...+..++..+ ...+++++++++--
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~---~l~gk~v~~f~t~g 127 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH---SLKGKTVVPFATSG 127 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS---CCTTSEEEEEEECS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc---CCCcCEEEEEEecC
Confidence 467899999999886533223445555443 22468898888875
No 311
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=24.35 E-value=2.2e+02 Score=21.20 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=28.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCC
Q 031238 31 GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSD 75 (163)
Q Consensus 31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D 75 (163)
.++.+++|... ...++.+....+..+... +.+ .-+|+|+..
T Consensus 234 ~~~~~vlV~~p-e~~si~ea~r~~~~L~~~---g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCIS-EFLSLYETERLIQELISY---DMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEES-SHHHHHHHHHHHHHHHHT---TCCEEEEEEEEEC
T ss_pred CCcEEEEEeCC-CcchHHHHHHHHHHHHHc---CCCCCEEEEecCC
Confidence 57889999875 456677777777776654 334 457899987
No 312
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=23.96 E-value=92 Score=22.85 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=29.1
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 105 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 143 (301)
T 1xky_A 105 EVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST--PLPVML 143 (301)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC--SSCEEE
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 347999999887766667778888888887654 478764
No 313
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=23.68 E-value=58 Score=20.26 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=24.5
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS 74 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 74 (163)
..+++++++|++.......+ ..+...+ ......++|++.|--.-
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s-~wv~~EI---~~A~~~gkpIigV~~~g 77 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRR-DEILGAV---DLARKSSKPIITVRPYG 77 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSH-HHHHHHH---HHHTTTTCCEEEECCSS
T ss_pred CccccCCEEEEEeCCCcCCC-hHHHHHH---HHHHHcCCCEEEEEcCC
Confidence 34778999999987754322 1122212 22222478987765443
No 314
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=23.68 E-value=94 Score=22.61 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=28.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 131 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVL 131 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999999877766667778888888887654 478764
No 315
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=23.66 E-value=92 Score=22.70 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=29.0
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 93 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 131 (294)
T 2ehh_A 93 EVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIII 131 (294)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 347999999877766667778888888887654 478764
No 316
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.51 E-value=98 Score=20.06 Aligned_cols=65 Identities=12% Similarity=-0.036 Sum_probs=40.2
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
+..+|++|+........ +.. ..++..+......++++.++++--- ..-.......+.+..|+.++
T Consensus 49 ~~~~d~ii~Gspty~g~-~p~-~~fl~~l~~~~l~gk~v~~fgs~g~----~g~a~~~l~~~l~~~G~~~v 113 (161)
T 3hly_A 49 VSSARGIVLGTPPSQPS-EAV-ATALSTIFAAAHNKQAIGLFDSYGG----DDEPIDALLAQFRNLGLHTA 113 (161)
T ss_dssp HHHCSEEEEECCBSSCC-HHH-HHHHHHHHHHCCTTSEEEEECCCCS----SBCCHHHHHHHHHHTTCEES
T ss_pred HHhCCEEEEEcCCcCCc-hhH-HHHHHHHHhhhhCCCEEEEEEcCCC----CcHHHHHHHHHHHHCCCEEe
Confidence 45789999998766532 332 4445555443334789999987422 12346677777777787554
No 317
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=23.38 E-value=1e+02 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=19.3
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
+++||+|++-...+... +..+.. .++|+|++....+
T Consensus 64 ~~vdGiIi~~~~~~~~~-------~~~l~~---~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFR-------LQYLQK---QNFPFLALGRSHL 99 (294)
T ss_dssp TCCSEEEECSCCSSCHH-------HHHHHH---TTCCEEEESCCCC
T ss_pred CCCCEEEEeCCCCChHH-------HHHHHh---CCCCEEEECCCCC
Confidence 47899887632222111 122221 2689988877643
No 318
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.35 E-value=1.6e+02 Score=20.73 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=28.6
Q ss_pred EEEEEEeCCChhhH-hhhhhh-hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQERY-RAITSA-YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~-~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
+.+.+.++.+.... ....+. .-+++|++|++-...+. .. +..+.. .++|+|++....+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~----~~---~~~l~~---~~iPvV~i~~~~~ 102 (295)
T 3hcw_A 43 YGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND----PI---KQMLID---ESMPFIVIGKPTS 102 (295)
T ss_dssp CEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC----HH---HHHHHH---TTCCEEEESCCCS
T ss_pred CEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh----HH---HHHHHh---CCCCEEEECCCCc
Confidence 45556665543221 222222 23679998886321111 11 111221 2689998887654
No 319
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.10 E-value=1e+02 Score=22.49 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=29.1
Q ss_pred hcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+ .+-+.+..++..+.+.. +.|+++
T Consensus 89 ~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiil 128 (293)
T 1w3i_A 89 DFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS--PHPVYL 128 (293)
T ss_dssp GSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred hcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEE
Confidence 3479999998777666 67778888888887654 478764
No 320
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.68 E-value=99 Score=22.50 Aligned_cols=38 Identities=18% Similarity=0.436 Sum_probs=27.9
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 132 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT--DLPQIL 132 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47899988877666667777888888876554 478764
No 321
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=22.66 E-value=97 Score=22.77 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=28.2
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 143 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISERT--DLGIVV 143 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 47999999877766667777888888876554 478764
No 322
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=22.42 E-value=1e+02 Score=22.67 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 109 ~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 147 (304)
T 3cpr_A 109 SAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICL 147 (304)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 347999999877666666777888888887654 478764
No 323
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.36 E-value=97 Score=22.74 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=28.8
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+..+ +.|+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-~lPiil 143 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSAD-GLPMVV 143 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCC-CCCEEE
Confidence 479999998777666677788888888776543 378764
No 324
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=22.28 E-value=73 Score=21.34 Aligned_cols=48 Identities=8% Similarity=-0.141 Sum_probs=28.1
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHh----hcCCCCeEEEEeeCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRD----HADSNIVIMMAGNKS 74 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piivv~nK~ 74 (163)
..+..+|++|+........--..++.++..+.. ....++|+.++++--
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g 101 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSA 101 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECC
Confidence 346789999999877543222234444444331 112468888888764
No 325
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=21.97 E-value=95 Score=22.62 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=28.4
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+.+.+..++..+.+..+ .|+++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~--lPiil 135 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG--SNMIV 135 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHC--CCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC--CCEEE
Confidence 489999998777666677778888888876643 68764
No 326
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.91 E-value=1e+02 Score=22.75 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=29.0
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 116 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 154 (314)
T 3qze_A 116 SGGADACLLVTPYYNKPTQEGMYQHFRHIAEAV--AIPQIL 154 (314)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS--CSCEEE
T ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 347999999877666666677888888887664 478765
No 327
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.84 E-value=97 Score=22.58 Aligned_cols=38 Identities=11% Similarity=0.293 Sum_probs=28.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 133 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAV--KLPVVL 133 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 47999999877666666677888888887665 478764
No 328
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=21.81 E-value=1.1e+02 Score=21.40 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=31.5
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-------------cCCCCeEEEEeeCCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-------------ADSNIVIMMAGNKSD 75 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piivv~nK~D 75 (163)
..+..+|++|+.+..-...--..++.|+..+... .-.+++++++.+--.
T Consensus 88 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 88 KKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 3477899999999987543223456777766421 114678888777543
No 329
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.78 E-value=1e+02 Score=22.68 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=28.5
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 146 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT--ELPMLL 146 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999999877666667777888888877654 588765
No 330
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=21.72 E-value=1e+02 Score=23.13 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=29.7
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEee
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 72 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 72 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|++ +-|
T Consensus 124 ~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPii-lYn 164 (343)
T 2v9d_A 124 QAGADGIVVINPYYWKVSEANLIRYFEQVADSV--TLPVM-LYN 164 (343)
T ss_dssp HHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC--SSCEE-EEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEE-EEe
Confidence 347999999877766667778888888887654 47876 444
No 331
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=21.62 E-value=1.1e+02 Score=22.30 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=28.3
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiil 132 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV--ELPLIL 132 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999998876666556677888888887664 478764
No 332
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.07 E-value=1.1e+02 Score=22.31 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=28.7
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 100 ~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiil 138 (297)
T 3flu_A 100 KAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT--SIPMII 138 (297)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEE
T ss_pred HcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 347899998877666666677888888887664 478765
No 333
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=20.91 E-value=50 Score=24.86 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=38.7
Q ss_pred hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238 28 YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.+..+|++|++.......-...++.++..+..... .++++.++++--.. .-.......+....|+.++
T Consensus 304 ~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~ 374 (404)
T 2ohh_A 304 DILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVA 374 (404)
T ss_dssp HHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEE
T ss_pred HHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEE
Confidence 46789999999865543212234444544433222 46888888874221 1124566677777776543
No 334
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.87 E-value=91 Score=23.05 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=29.1
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEee
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 72 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 72 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|++ +-|
T Consensus 104 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPii-lYn 144 (314)
T 3d0c_A 104 DSGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAPSI-IYF 144 (314)
T ss_dssp HTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSCEE-EEE
T ss_pred HcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEE-EEe
Confidence 347999998877666666677888888877654 37865 444
No 335
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.70 E-value=84 Score=23.24 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=31.1
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEee-CCCC
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN-KSDL 76 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n-K~Dl 76 (163)
.++|+++++-......+-+.+..++..+.+..+ .|+++ .| ..++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~--lPiil-Yn~g~~l 149 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEALD--FPSLV-YFKDPEI 149 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHT--SCEEE-EECCTTS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC--CCEEE-EeCCCCC
Confidence 479999988666666677788888888876654 78754 44 4444
No 336
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.37 E-value=92 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=28.2
Q ss_pred cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 30 RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 30 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil 165 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGAT--ALPLAI 165 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 47999988877666667777888888887654 478764
No 337
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=20.32 E-value=57 Score=16.45 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=9.0
Q ss_pred CCCCCCcccCccCC
Q 031238 150 NDASPSVKKGCCST 163 (163)
Q Consensus 150 ~~~~~~~~~~~c~~ 163 (163)
|++..-.+.+-|+|
T Consensus 13 PkPHRL~~~~~C~C 26 (42)
T 2l0z_A 13 PLPHRLNSLGGCRC 26 (42)
T ss_dssp CTTSCCCTTSSBTT
T ss_pred CCCceecCCceecc
Confidence 34555566778887
No 338
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.25 E-value=94 Score=23.01 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=28.8
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEE
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 69 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 69 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 117 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil 155 (315)
T 3na8_A 117 SLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI--GVPVML 155 (315)
T ss_dssp HTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCcEEE
Confidence 347899998877666666778888888887665 478764
No 339
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=20.17 E-value=1.3e+02 Score=23.18 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=32.5
Q ss_pred hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc---------CCCCeEEEEeeCCC
Q 031238 27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA---------DSNIVIMMAGNKSD 75 (163)
Q Consensus 27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---------~~~~piivv~nK~D 75 (163)
..+..+|++|+.+..-...---.++.|+..+.... -.+++++++.+--.
T Consensus 288 ~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~ 345 (413)
T 3l9w_A 288 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGG 345 (413)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSS
T ss_pred HHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCC
Confidence 45788999999999876433334577887774320 13678877777543
No 340
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.16 E-value=1.8e+02 Score=20.21 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=28.3
Q ss_pred EEEEEEeCCChhhH-hhhhhhh-hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238 8 VKAQIWDTAGQERY-RAITSAY-YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD 75 (163)
Q Consensus 8 ~~l~l~Dt~G~~~~-~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 75 (163)
+.+.+.++.+.... ....+.. -+++|++|++- ..... . .+..+.. .++|+|++....+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~-~~~~~---~---~~~~l~~---~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 44 YALYMSTGETEEEIFNGVVKMVQGRQIGGIILLY-SREND---R---IIQYLHE---QNFPFVLIGKPYD 103 (292)
T ss_dssp CEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESC-CBTTC---H---HHHHHHH---TTCCEEEESCCSS
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeC-CCCCh---H---HHHHHHH---CCCCEEEECCCCC
Confidence 34555565544322 2222222 35789988753 22111 1 1222221 3689998877654
No 341
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.10 E-value=2.6e+02 Score=20.35 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=42.1
Q ss_pred hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH-cCCcEEEec
Q 031238 29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETS 102 (163)
Q Consensus 29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 102 (163)
-.++|+++++-....+.+-+.+..++..+.+.. +.|+++ -|--.. ....++.+...++++. .++--+.-+
T Consensus 101 ~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil-Yn~P~~-tg~~l~~~~~~~La~~~pnivgiKds 171 (301)
T 3m5v_A 101 EHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV--DIPVLL-YNVPGR-TGCEISTDTIIKLFRDCENIYGVKEA 171 (301)
T ss_dssp HTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE-EECHHH-HSCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE-EeCchh-hCcCCCHHHHHHHHhcCCCEEEEEeC
Confidence 357999999877666666777888888887665 488764 431100 1123456666666655 344334433
No 342
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=20.02 E-value=47 Score=21.59 Aligned_cols=72 Identities=4% Similarity=-0.183 Sum_probs=37.6
Q ss_pred hhcCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc--cccCCHHHHHHHHHHcCCcEE
Q 031238 28 YYRGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH--LRAVTEEDGHSLAEKEGLSFL 99 (163)
Q Consensus 28 ~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 99 (163)
.+...|.+|+++.... ...-..+..++..+......++++.++++--.... ...-............|..++
T Consensus 43 ~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~ 117 (169)
T 1czn_A 43 DLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTV 117 (169)
T ss_dssp GGGGCSEEEEECCEETTTEECHHHHHHGGGGGGSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEEC
T ss_pred HHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEE
Confidence 4667899999887643 21112233444433332235689999888532100 111124455556666676443
Done!