BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031239
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 103 WALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEA 153
W++ L + A L +EY IF ++ LLG GI E R YTE+
Sbjct: 223 WSIALGSPFTFATTLEQEYKS---DIFGERGILLGAVHGIVECLFRRYTES 270
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 80 NELFAWQEKGLSEKEGSEDGKIIWALRLKATL 111
NE F+W LS+ + S+DGK W L LK L
Sbjct: 68 NEDFSWDSLLLSQYQPSDDGK-TWLLTLKPDL 98
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 38 WLAENVELKNISSWNDPLGMLVVGIRHLGFSAWK 71
W+AE+++L+NI + DPL +L + H A K
Sbjct: 824 WIAESIQLRNI--YTDPLNVLQAELLHRSRQAEK 855
>pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+
pdb|3FR7|B Chain B, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+
pdb|3FR8|A Chain A, Rice Ketolacid Reductoisomerase In Complex With Mg2+-Nadph
pdb|3FR8|B Chain B, Rice Ketolacid Reductoisomerase In Complex With Mg2+-Nadph
Length = 525
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 103 WALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTE 152
W++ L + A L +EY IF ++ LLG GI E R YTE
Sbjct: 223 WSVALGSPFTFATTLEQEYKS---DIFGERGILLGAVHGIVEALFRRYTE 269
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 41 ENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGK 100
+ E + SW LV H A A+ N Q+ L E ED
Sbjct: 268 DKAETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD--LEEGSSVEDAL 325
Query: 101 IIWALRLKATLDRARRLTEEYS 122
+ W R++ DR + L+ +Y+
Sbjct: 326 VAWETRIRPITDRCQALSGDYA 347
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 41 ENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGK 100
+ E + SW LV H A A+ N Q+ L E ED
Sbjct: 304 DKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD--LEEGSSVEDAL 361
Query: 101 IIWALRLKATLDRARRLTEEYS 122
+ W R++ DR + L+ +Y+
Sbjct: 362 VAWETRIRPITDRCQALSGDYA 383
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 41 ENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGK 100
+ E + SW LV H A A+ N Q+ L E ED
Sbjct: 268 DKFETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD--LEEGSSVEDAL 325
Query: 101 IIWALRLKATLDRARRLTEEYS 122
+ W R++ DR + L+ +Y+
Sbjct: 326 VAWETRIRPITDRCQALSGDYA 347
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 41 ENVELKNISSWNDPLGMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKGLSEKEGSEDGK 100
+ E + SW LV H A A+ N Q+ L E ED
Sbjct: 268 DKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQD--LEEGSSVEDAL 325
Query: 101 IIWALRLKATLDRARRLTEEYS 122
+ W R++ DR + L+ +Y+
Sbjct: 326 VAWETRIRPITDRCQALSGDYA 347
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 84 AWQEKGLSEKEGSEDGKIIWALRLKATLDRA 114
AW+ GL++ E +DG I AL LD A
Sbjct: 57 AWRSLGLTQAENEKDGLAIIALNHARALDPA 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,164,903
Number of Sequences: 62578
Number of extensions: 201860
Number of successful extensions: 483
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 14
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)