Query 031239
Match_columns 163
No_of_seqs 44 out of 46
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 11:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01726 LexA_DNA_bind: LexA D 42.3 39 0.00085 23.2 3.4 48 112-159 6-55 (65)
2 PRK15345 type III secretion sy 40.0 35 0.00075 31.1 3.5 32 105-147 218-254 (326)
3 COG0278 Glutaredoxin-related p 36.8 24 0.00052 27.3 1.8 32 128-159 31-63 (105)
4 PF14003 YlbE: YlbE-like prote 36.5 45 0.00098 23.7 3.0 43 100-142 11-53 (65)
5 PF04539 Sigma70_r3: Sigma-70 31.7 54 0.0012 22.0 2.7 35 115-149 4-39 (78)
6 PF04031 Las1: Las1-like ; In 31.4 30 0.00066 27.5 1.6 47 104-151 75-122 (154)
7 PF14549 P22_Cro: DNA-binding 25.1 38 0.00082 23.3 1.0 28 122-150 2-29 (60)
8 KOG2244 Highly conserved prote 25.1 60 0.0013 32.2 2.7 28 14-42 575-602 (786)
9 PF12528 DUF3728: Prepilin pep 24.0 31 0.00067 25.0 0.4 18 4-21 15-32 (84)
10 PF03826 OAR: OAR domain; Int 23.1 55 0.0012 18.6 1.2 9 102-110 8-16 (21)
11 PRK01964 4-oxalocrotonate taut 22.3 61 0.0013 21.3 1.6 26 128-153 20-45 (64)
12 PF09339 HTH_IclR: IclR helix- 22.1 21 0.00045 22.8 -0.7 48 110-160 1-48 (52)
13 PRK02289 4-oxalocrotonate taut 22.1 66 0.0014 21.1 1.7 22 133-154 25-46 (60)
14 PF13961 DUF4219: Domain of un 21.8 1.1E+02 0.0024 17.7 2.4 15 99-113 5-19 (27)
15 PRK06683 hypothetical protein; 21.5 90 0.0019 22.4 2.4 34 112-146 39-75 (82)
16 PF00570 HRDC: HRDC domain Blo 21.2 1.5E+02 0.0033 19.2 3.3 63 78-156 4-66 (68)
17 TIGR02049 gshA_ferroox glutama 20.5 70 0.0015 30.0 2.0 37 103-153 183-219 (403)
No 1
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=42.34 E-value=39 Score=23.21 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=31.0
Q ss_pred HHHHHhHHHHHHHHH-hhchhhHHHHHHHhCCC-CCcccchhhhhhhhcc
Q 031239 112 DRARRLTEEYSEALL-QIFPQKVQLLGKALGIP-ENSVRTYTEAEIRAGY 159 (163)
Q Consensus 112 DRaRRl~e~~s~~~~-~~f~~~a~~LG~aLGi~-~~av~~FtEa~IRAgv 159 (163)
+|=++.++--.+.+. ..++|+...+++.||+. ..+|.-.-++-.+-|.
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~ 55 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGY 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcC
Confidence 444455555455444 68999999999999998 7777766666666554
No 2
>PRK15345 type III secretion system protein SsaL; Provisional
Probab=40.03 E-value=35 Score=31.08 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHhH-----HHHHHHHHhhchhhHHHHHHHhCCCCCcc
Q 031239 105 LRLKATLDRARRLT-----EEYSEALLQIFPQKVQLLGKALGIPENSV 147 (163)
Q Consensus 105 LRlKAtLDRaRRl~-----e~~s~~~~~~f~~~a~~LG~aLGi~~~av 147 (163)
-|+.||+|+-||++ |+||+. +|+++|+|.+++
T Consensus 218 ~rLaa~i~dLrRLLlFLgLEd~C~r-----------~a~a~~l~gd~i 254 (326)
T PRK15345 218 SRLAAALVRLRRLLLFLGLEKECQR-----------EEWICQLPPNTL 254 (326)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHH-----------HHHHhCCChhHH
Confidence 79999999999985 777765 567777776654
No 3
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=24 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.6
Q ss_pred hchhhHHHHHHHhC-CCCCcccchhhhhhhhcc
Q 031239 128 IFPQKVQLLGKALG-IPENSVRTYTEAEIRAGY 159 (163)
Q Consensus 128 ~f~~~a~~LG~aLG-i~~~av~~FtEa~IRAgv 159 (163)
.|+.++-.+=..+| ++-+.|+|-.+++||+++
T Consensus 31 GFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~l 63 (105)
T COG0278 31 GFSAQAVQILSACGVVDFAYVDVLQDPEIRQGL 63 (105)
T ss_pred CccHHHHHHHHHcCCcceeEEeeccCHHHHhcc
Confidence 57778888889999 899999999999999986
No 4
>PF14003 YlbE: YlbE-like protein
Probab=36.45 E-value=45 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=35.5
Q ss_pred hhHHHHHHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCC
Q 031239 100 KIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGI 142 (163)
Q Consensus 100 ~~~wALRlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi 142 (163)
-|.|..+|---=+.--..-.++-+.+-+.||++++.+.+.++.
T Consensus 11 ~P~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqM 53 (65)
T PF14003_consen 11 QPIWYRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQM 53 (65)
T ss_pred CcHHHHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHH
Confidence 3578888877777777788888999999999999999887754
No 5
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=31.73 E-value=54 Score=22.01 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHhh-chhhHHHHHHHhCCCCCcccc
Q 031239 115 RRLTEEYSEALLQI-FPQKVQLLGKALGIPENSVRT 149 (163)
Q Consensus 115 RRl~e~~s~~~~~~-f~~~a~~LG~aLGi~~~av~~ 149 (163)
+++-..+.++..++ -.|+.+.++..|||+..-|.-
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~~v~~ 39 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELGISVEEVRE 39 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHcccHHHHHH
Confidence 33333444444444 689999999999999776653
No 6
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=31.36 E-value=30 Score=27.54 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHH-hhchhhHHHHHHHhCCCCCcccchh
Q 031239 104 ALRLKATLDRARRLTEEYSEALL-QIFPQKVQLLGKALGIPENSVRTYT 151 (163)
Q Consensus 104 ALRlKAtLDRaRRl~e~~s~~~~-~~f~~~a~~LG~aLGi~~~av~~Ft 151 (163)
.+|+.-+.-=. |.+-..+|..+ ..+..+...+++.+|||.|-|++=-
T Consensus 75 ~lr~~ysmaiv-RfVNgl~D~~Q~~~~a~si~~~A~~iglP~~lVdlRH 122 (154)
T PF04031_consen 75 ELRLSYSMAIV-RFVNGLVDPSQQGKYARSIASLAKEIGLPSWLVDLRH 122 (154)
T ss_pred HHHHHHHHhHH-HHHHHhhhHhhccchhhhHHHHHHHcCCCHHHHHHHH
Confidence 45655554443 45666667666 6777888999999999999987633
No 7
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=25.11 E-value=38 Score=23.25 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=19.9
Q ss_pred HHHHHhhchhhHHHHHHHhCCCCCcccch
Q 031239 122 SEALLQIFPQKVQLLGKALGIPENSVRTY 150 (163)
Q Consensus 122 s~~~~~~f~~~a~~LG~aLGi~~~av~~F 150 (163)
.+.+.+.|+. ...|+++|||.+.+|.-.
T Consensus 2 k~~aI~~~G~-~~~lAkalGVs~~aVs~W 29 (60)
T PF14549_consen 2 KKDAIKYFGG-QSKLAKALGVSPQAVSQW 29 (60)
T ss_dssp HHHHHHHHSS-HHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHCC-HHHHHHHHCCCHHHHHHh
Confidence 3456677874 558999999998887544
No 8
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=25.07 E-value=60 Score=32.23 Aligned_cols=28 Identities=39% Similarity=0.735 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHHHHhhccCcchhhhh
Q 031239 14 GLEDYLFVLLSRFLNALETKGGAHWLAEN 42 (163)
Q Consensus 14 ~lEdyaFVLLSR~ln~le~~gg~~~~~~~ 42 (163)
=||||||+ .+-+|..-++.|+.+||.-.
T Consensus 575 FldDYAFl-I~gLLDlYea~~~~e~LkwA 602 (786)
T KOG2244|consen 575 FLDDYAFL-ISGLLDLYEAGGGIEWLKWA 602 (786)
T ss_pred hhhhHHHH-HHHHHHHHHccCchHHHHHH
Confidence 58999996 57788999999999999433
No 9
>PF12528 DUF3728: Prepilin peptidase dependent protein C (DUF3728); InterPro: IPR022204 This family of proteins is found in bacteria. Proteins in this family are typically between 106 and 121 amino acids in length. The family is found in association with PF07963 from PFAM. There are two completely conserved C residues that may be functionally important. This family is frequently annotated as prepilin peptidase dependent protein C however there is little accompanying literature to confirm this.
Probab=23.96 E-value=31 Score=25.03 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.5
Q ss_pred chhhHHHhhhcchhHHHH
Q 031239 4 LFNQWRLCEIGLEDYLFV 21 (163)
Q Consensus 4 ~rQ~WRlaEi~lEdyaFV 21 (163)
+||.||+|.=-||-|..-
T Consensus 15 qrQAWr~a~q~le~~~~~ 32 (84)
T PF12528_consen 15 QRQAWRLAHQQLESYEAG 32 (84)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 799999999998888765
No 10
>PF03826 OAR: OAR domain; InterPro: IPR003654 This 14 amino acid motif has been identified within the C-terminal region of several Paired-like homeodomain (HD) containing proteins [, ]. It was named OAR domain after the initials of otp, aristaless, and rax []. Although it has been proposed that this domain could be important for transactivation and be involved in protein-protein interactions or DNA binding [, ], is function is not yet known. Some proteins known to contain a OAR domain include human RIEG, defects in which are the cause of Rieger syndrome []; human OG12X and Mus musculus (Mouse) Og12x, whose function is not yet known []; vertebrate Rax, which plays a role in the proliferation and/or differentiation of retinal cells []; Drosophila DRX, which appears to be important in brain development []; and human SHOX, encoded by the short stature homeobox-containing gene. Defects or lack of this protein are the cause of short stature associated with the Turner syndrome [].; GO: 0003677 DNA binding, 0007275 multicellular organismal development, 0005634 nucleus
Probab=23.05 E-value=55 Score=18.62 Aligned_cols=9 Identities=78% Similarity=0.785 Sum_probs=7.2
Q ss_pred HHHHHHHhH
Q 031239 102 IWALRLKAT 110 (163)
Q Consensus 102 ~wALRlKAt 110 (163)
+-+||+||-
T Consensus 8 Ia~LRlKAk 16 (21)
T PF03826_consen 8 IAALRLKAK 16 (21)
T ss_pred HHHHHHHHH
Confidence 678999973
No 11
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.35 E-value=61 Score=21.28 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=18.0
Q ss_pred hchhhHHHHHHHhCCCCCcccchhhh
Q 031239 128 IFPQKVQLLGKALGIPENSVRTYTEA 153 (163)
Q Consensus 128 ~f~~~a~~LG~aLGi~~~av~~FtEa 153 (163)
++..-.+.+.+.||+|++.+.++-++
T Consensus 20 l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 20 LIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 33334456777899999998887544
No 12
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=22.15 E-value=21 Score=22.77 Aligned_cols=48 Identities=31% Similarity=0.567 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCcccchhhhhhhhccc
Q 031239 110 TLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIRAGYV 160 (163)
Q Consensus 110 tLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~av~~FtEa~IRAgvv 160 (163)
+++|+-+.++-.++.=. +-+...|.+.+|+|..++.-+-..-.+.|.+
T Consensus 1 sl~ral~iL~~l~~~~~---~~t~~eia~~~gl~~stv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 1 SLERALRILEALAESGG---PLTLSEIARALGLPKSTVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHHHHHHCHHCTBS---CEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHcCCC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCcCe
Confidence 46677666655444311 1268899999999998887776666666654
No 13
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=22.07 E-value=66 Score=21.14 Aligned_cols=22 Identities=5% Similarity=0.336 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCCCcccchhhhh
Q 031239 133 VQLLGKALGIPENSVRTYTEAE 154 (163)
Q Consensus 133 a~~LG~aLGi~~~av~~FtEa~ 154 (163)
.+.+.+.||+|+.+|.++-++.
T Consensus 25 t~a~~~~~~~p~~~v~V~i~ev 46 (60)
T PRK02289 25 TEVVSRIAKAPKEAIHVFINDM 46 (60)
T ss_pred HHHHHHHhCcCcceEEEEEEEe
Confidence 3456678899999999887664
No 14
>PF13961 DUF4219: Domain of unknown function (DUF4219)
Probab=21.82 E-value=1.1e+02 Score=17.66 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.7
Q ss_pred chhHHHHHHHhHHHH
Q 031239 99 GKIIWALRLKATLDR 113 (163)
Q Consensus 99 ~~~~wALRlKAtLDR 113 (163)
..+.|+.|+|+.|+.
T Consensus 5 NY~~W~~~M~~~L~~ 19 (27)
T PF13961_consen 5 NYSTWKIRMKAYLES 19 (27)
T ss_pred CHHHHHHHHHHHHHH
Confidence 467999999999875
No 15
>PRK06683 hypothetical protein; Provisional
Probab=21.52 E-value=90 Score=22.38 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHHHH---hhchhhHHHHHHHhCCCCCc
Q 031239 112 DRARRLTEEYSEALL---QIFPQKVQLLGKALGIPENS 146 (163)
Q Consensus 112 DRaRRl~e~~s~~~~---~~f~~~a~~LG~aLGi~~~a 146 (163)
++++.-+.++++.+. -.|+ +-..||+++|||..+
T Consensus 39 ~~~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~G~~~~~ 75 (82)
T PRK06683 39 MRLTHVIIRTALQHNIPITKVE-SVRKLGKVAGIQVGA 75 (82)
T ss_pred HHHHHHHHHHHHhcCCCEEEEC-CHHHHHHHhCCcccE
Confidence 445555555555432 2333 779999999999764
No 16
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=21.20 E-value=1.5e+02 Score=19.21 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccccccCCCcchhHHHHHHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCcccchhhhhhh
Q 031239 78 IGNELFAWQEKGLSEKEGSEDGKIIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEAEIR 156 (163)
Q Consensus 78 i~~eL~~W~~~~~~~~~~~~d~~~~wALRlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~av~~FtEa~IR 156 (163)
+..+|..|....... .| ..+..-+..+--..+....|.+.+.|-+.-|+.++-++-|-++.|.
T Consensus 4 ~~~~L~~~R~~~A~~----~~------------~~~~~Il~~~~L~~ia~~~P~s~~~L~~i~g~~~~~~~~~g~~il~ 66 (68)
T PF00570_consen 4 LLKALKEWREELARE----ED------------VPPYRILSDEALLEIAKRLPTSIEELLQIPGMGKRKVRKYGDEILE 66 (68)
T ss_dssp HHHHHHHHHHHHHHH----HT------------S-HHHHS-HHHHHHHHHH--SSHHHHHTSTTCGHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHH----cC------------cCcccccCHHHHHHHHHhCCCCHHHHHHccCCCHHHHHHHHHHHHh
Confidence 456889998665211 11 1223334444555677778999999999999999999999998875
No 17
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=20.47 E-value=70 Score=29.95 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.7
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCcccchhhh
Q 031239 103 WALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTEA 153 (163)
Q Consensus 103 wALRlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~av~~FtEa 153 (163)
|+-|-|+. .-+.|+.-+..+++.+|||+|-++.|.+.
T Consensus 183 W~~RrKS~--------------hF~~Y~~va~eF~~~~~IDPWlInp~f~~ 219 (403)
T TIGR02049 183 WHSRRKSN--------------HFEAYQEVASEFAKLIGIDPWLINPYFEK 219 (403)
T ss_pred cccccccc--------------hhHHHHHHHHHHHHHhCCCcccccHhhhc
Confidence 88888864 44567778999999999999999988763
Done!