Query 031239
Match_columns 163
No_of_seqs 44 out of 46
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:58:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g6u_A Domain swapped dimer; d 43.0 39 0.0013 21.5 4.2 34 56-89 3-36 (48)
2 2jt1_A PEFI protein; solution 37.6 23 0.0008 24.1 2.7 32 128-159 22-53 (77)
3 1jkg_A P15; NTF2-like domain, 29.7 30 0.001 25.4 2.4 33 107-139 6-38 (140)
4 2l9b_A MRNA 3'-END-processing 25.5 71 0.0024 23.7 3.8 24 67-90 46-69 (109)
5 2apl_A Hypothetical protein PG 18.2 74 0.0025 25.1 2.7 29 110-138 34-63 (157)
6 3nv0_B NTF2-related export pro 16.6 77 0.0026 24.0 2.4 35 106-140 25-59 (154)
7 1odm_A Isopenicillin N synthas 15.7 1.4E+02 0.0047 24.7 3.9 36 111-146 135-170 (331)
8 3m20_A 4-oxalocrotonate tautom 15.7 81 0.0028 19.5 2.0 23 132-154 22-44 (62)
9 3oox_A Putative 2OG-Fe(II) oxy 15.1 1.5E+02 0.0051 24.2 3.9 36 111-146 124-159 (312)
10 1w9y_A 1-aminocyclopropane-1-c 14.8 1.5E+02 0.0052 24.4 3.9 36 111-146 107-142 (319)
No 1
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.00 E-value=39 Score=21.50 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHhc
Q 031239 56 GMLVVGIRHLGFSAWKPAECAAIGNELFAWQEKG 89 (163)
Q Consensus 56 ~~lal~l~~laLSg~~~~E~~ai~~eL~~W~~~~ 89 (163)
+++-.-++.+-=-|..|+|+.++..||.+...+.
T Consensus 3 aalkselqalkkegfspeelaaleselqalekkl 36 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666999999999999986543
No 2
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=37.60 E-value=23 Score=24.07 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=24.2
Q ss_pred hchhhHHHHHHHhCCCCCcccchhhhhhhhcc
Q 031239 128 IFPQKVQLLGKALGIPENSVRTYTEAEIRAGY 159 (163)
Q Consensus 128 ~f~~~a~~LG~aLGi~~~av~~FtEa~IRAgv 159 (163)
.++|++..|+++|||.+.+|+-.=.+--+.|.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~ 53 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGV 53 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCc
Confidence 38999999999999987777665555444443
No 3
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=29.72 E-value=30 Score=25.43 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.5
Q ss_pred HHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHH
Q 031239 107 LKATLDRARRLTEEYSEALLQIFPQKVQLLGKA 139 (163)
Q Consensus 107 lKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~a 139 (163)
+|+-+|.+.++.+.+.+.|..+|....+.|.+.
T Consensus 6 ~~~~~~~a~~v~~~Fv~~YY~~~d~~r~~L~~~ 38 (140)
T 1jkg_A 6 FKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRL 38 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGG
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 588899999999999999999999988877754
No 4
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=25.50 E-value=71 Score=23.71 Aligned_cols=24 Identities=4% Similarity=0.010 Sum_probs=21.0
Q ss_pred hcCCCchhhhHHHHHHHHHHHhcc
Q 031239 67 FSAWKPAECAAIGNELFAWQEKGL 90 (163)
Q Consensus 67 LSg~~~~E~~ai~~eL~~W~~~~~ 90 (163)
||+..|++...|-.++|.|..+.+
T Consensus 46 Laslpp~Ql~eiL~qmK~~~~~nP 69 (109)
T 2l9b_A 46 LAKKPKEVQLKFLQKFQEWTRAHP 69 (109)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHCH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhCH
Confidence 677889999999999999997763
No 5
>2apl_A Hypothetical protein PG0816; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG, U function; 2.01A {Porphyromonas gingivalis} SCOP: a.258.1.1
Probab=18.25 E-value=74 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHhhchh-hHHHHHH
Q 031239 110 TLDRARRLTEEYSEALLQIFPQ-KVQLLGK 138 (163)
Q Consensus 110 tLDRaRRl~e~~s~~~~~~f~~-~a~~LG~ 138 (163)
.-+|+..+++.|++++.+.++. .|+.+++
T Consensus 34 I~~Rad~Aa~aYe~A~~~G~~~~~A~e~A~ 63 (157)
T 2apl_A 34 ITARSDEALTAYCDAVAQGFSHPEAESMAS 63 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3479999999999999999974 3444443
No 6
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=16.60 E-value=77 Score=24.03 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHh
Q 031239 106 RLKATLDRARRLTEEYSEALLQIFPQKVQLLGKAL 140 (163)
Q Consensus 106 RlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aL 140 (163)
-+|.-.|.+-+..+.|.+.|..+|....+.|.+.-
T Consensus 25 ~~~~~~~~a~~vg~~FV~qYY~~~d~~R~~L~~fY 59 (154)
T 3nv0_B 25 EINKEDEELCNESKKFMDVYYDVMDRKREKIGFLY 59 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGGE
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHh
Confidence 47889999999999999999999998888887643
No 7
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=15.71 E-value=1.4e+02 Score=24.65 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCc
Q 031239 111 LDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENS 146 (163)
Q Consensus 111 LDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~a 146 (163)
+..-|..+++|.+.+.++-..=...|+.+||+|++.
T Consensus 135 ~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 170 (331)
T 1odm_A 135 HPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENF 170 (331)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 445678899999999999888889999999999864
No 8
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=15.67 E-value=81 Score=19.49 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=16.5
Q ss_pred hHHHHHHHhCCCCCcccchhhhh
Q 031239 132 KVQLLGKALGIPENSVRTYTEAE 154 (163)
Q Consensus 132 ~a~~LG~aLGi~~~av~~FtEa~ 154 (163)
-.+.+...||+|+..|.|.-++.
T Consensus 22 it~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 22 LTSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp HHHHHHHHHTCCTTSCEEEEECC
T ss_pred HHHHHHHHhCcCcceEEEEEEEe
Confidence 34456667899999988876554
No 9
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=15.06 E-value=1.5e+02 Score=24.18 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCc
Q 031239 111 LDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENS 146 (163)
Q Consensus 111 LDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~a 146 (163)
+..-|..+++|...+.++-..=-..|+.+||+|++.
T Consensus 124 ~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 159 (312)
T 3oox_A 124 IPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDF 159 (312)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 345678889999999998888888999999999863
No 10
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=14.83 E-value=1.5e+02 Score=24.44 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCc
Q 031239 111 LDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENS 146 (163)
Q Consensus 111 LDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~a 146 (163)
...-|..+++|.+.+.++-..=-+.|+.+||+|++.
T Consensus 107 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 142 (319)
T 1w9y_A 107 DEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGY 142 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 456678899999999999888889999999999864
Done!