Query 031239
Match_columns 163
No_of_seqs 44 out of 46
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 17:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031239.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031239hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l0oc_ a.4.13.2 (C:) SigmaF { 36.6 14 0.001 22.1 3.0 41 105-147 8-48 (57)
2 d1jhfa1 a.4.5.2 (A:2-72) LexA 24.2 33 0.0024 21.1 3.2 32 127-158 21-53 (71)
3 d1rqga1 a.27.1.1 (A:397-606) M 18.8 1E+02 0.0073 21.6 5.5 41 105-145 88-128 (210)
4 d1otfa_ d.80.1.1 (A:) 4-oxaloc 16.7 35 0.0025 19.9 2.0 23 132-154 23-45 (59)
5 d1dwka1 a.35.1.4 (A:1-86) Cyan 16.3 15 0.0011 24.5 0.0 31 128-158 53-83 (86)
6 d1w3ex1 d.79.3.1 (X:1-98) Euka 16.2 48 0.0035 21.4 2.8 41 112-152 43-88 (98)
7 d1v38a_ a.60.1.2 (A:) Sam-doma 15.0 32 0.0023 21.2 1.5 21 4-25 14-34 (78)
8 d2oola1 d.110.2.1 (A:140-333) 14.0 47 0.0034 23.3 2.4 47 101-152 4-50 (194)
9 d1i1ga1 a.4.5.32 (A:2-61) LprA 13.9 31 0.0022 20.5 1.1 30 131-160 18-47 (60)
10 d2a9ua1 a.118.23.1 (A:6-139) U 13.9 46 0.0034 23.1 2.3 20 15-34 50-69 (134)
No 1
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.58 E-value=14 Score=22.09 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCcc
Q 031239 105 LRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSV 147 (163)
Q Consensus 105 LRlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~av 147 (163)
-+++-.+-+.+++...+...+-. .|+++.|+..||+|..-|
T Consensus 8 r~~~e~~~ki~~~~~~l~q~lgR--ePT~~EiA~~l~~~~e~V 48 (57)
T d1l0oc_ 8 RSLKEMGNKIRKAKDELSKTRGR--APTVTEIADHLGISPEDV 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS--CCBHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHCcCHHHH
Confidence 46777777888888887776644 899999999999998765
No 2
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=24.21 E-value=33 Score=21.10 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=23.5
Q ss_pred hhchhhHHHHHHHhCC-CCCcccchhhhhhhhc
Q 031239 127 QIFPQKVQLLGKALGI-PENSVRTYTEAEIRAG 158 (163)
Q Consensus 127 ~~f~~~a~~LG~aLGi-~~~av~~FtEa~IRAg 158 (163)
+.++|+...++++||+ ...+|.-+-..-.+-|
T Consensus 21 ~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG 53 (71)
T d1jhfa1 21 TGMPPTRAEIAQRLGFRSPNAAEEHLKALARKG 53 (71)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCc
Confidence 4899999999999999 4556665555544433
No 3
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=18.82 E-value=1e+02 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCC
Q 031239 105 LRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPEN 145 (163)
Q Consensus 105 LRlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~ 145 (163)
-++.+++--+-.++..-+-++.=.+|..++.+-+.||+|+.
T Consensus 88 ~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~ 128 (210)
T d1rqga1 88 VRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV 128 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcc
Confidence 36778888888888888889999999999999999999864
No 4
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=16.68 E-value=35 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=17.4
Q ss_pred hHHHHHHHhCCCCCcccchhhhh
Q 031239 132 KVQLLGKALGIPENSVRTYTEAE 154 (163)
Q Consensus 132 ~a~~LG~aLGi~~~av~~FtEa~ 154 (163)
-.+.+.+.+|+|+..|.|+-.+.
T Consensus 23 it~~~~~~~g~~~~~v~V~i~E~ 45 (59)
T d1otfa_ 23 VSEAMANSLDAPLERVRVLITEM 45 (59)
T ss_dssp HHHHHHHHHTCCGGGCEEEEEEE
T ss_pred HHHHHHHHhCcCcccEEEEEEEe
Confidence 34556778999999999876654
No 5
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.26 E-value=15 Score=24.49 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=21.7
Q ss_pred hchhhHHHHHHHhCCCCCcccchhhhhhhhc
Q 031239 128 IFPQKVQLLGKALGIPENSVRTYTEAEIRAG 158 (163)
Q Consensus 128 ~f~~~a~~LG~aLGi~~~av~~FtEa~IRAg 158 (163)
+=++.|+.|+..||+|+..+....+==-|+|
T Consensus 53 l~~~~A~~l~~~L~L~~e~~~~Lq~~P~kGs 83 (86)
T d1dwka1 53 LPADAARLVGAKLDLDEDSILLLQMIPLRGC 83 (86)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHSBCCCCC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHcCCCCCC
Confidence 4456788899999999888776654444443
No 6
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=16.21 E-value=48 Score=21.42 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHHHHH-h--hchhhHHHHHHHhCCCCCc--ccchhh
Q 031239 112 DRARRLTEEYSEALL-Q--IFPQKVQLLGKALGIPENS--VRTYTE 152 (163)
Q Consensus 112 DRaRRl~e~~s~~~~-~--~f~~~a~~LG~aLGi~~~a--v~~FtE 152 (163)
++.+.-++.+|+..- . .|..+-..||+++|.+..+ |.|..+
T Consensus 43 ~~~~~~i~~~c~~~~Ip~~~~~~t~~eLG~a~Gk~~~vs~vaI~d~ 88 (98)
T d1w3ex1 43 PDIKEDIEYYARLSGIAVYEFEGTSVELGTLLGRPHTVSALAVVDP 88 (98)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESSCHHHHHHHTTCSSCCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEECCCHHHHHHHhCCCCCEEEEEEecc
Confidence 345566666776654 2 3677899999999998753 555544
No 7
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.99 E-value=32 Score=21.16 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=15.6
Q ss_pred chhhHHHhhhcchhHHHHHHHH
Q 031239 4 LFNQWRLCEIGLEDYLFVLLSR 25 (163)
Q Consensus 4 ~rQ~WRlaEi~lEdyaFVLLSR 25 (163)
..++| |..|+|++|.=+..-.
T Consensus 14 ~V~~W-L~~lgL~~Y~~~F~~~ 34 (78)
T d1v38a_ 14 TIQEF-LERIHLQEYTSTLLLN 34 (78)
T ss_dssp BHHHH-HHTTTCGGGHHHHHHH
T ss_pred HHHHH-HHHCCHHHHHHHHHHc
Confidence 45678 8899999998655444
No 8
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=13.96 E-value=47 Score=23.31 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=37.0
Q ss_pred hHHHHHHHhHHHHHHHhHHHHHHHHHhhchhhHHHHHHHhCCCCCcccchhh
Q 031239 101 IIWALRLKATLDRARRLTEEYSEALLQIFPQKVQLLGKALGIPENSVRTYTE 152 (163)
Q Consensus 101 ~~wALRlKAtLDRaRRl~e~~s~~~~~~f~~~a~~LG~aLGi~~~av~~FtE 152 (163)
..|...+..+++|-|..++ +.++|+..+..+++.||+|+=.+--|.+
T Consensus 4 ~~~~r~l~~i~~~Ir~sld-----l~~Il~tav~eir~~L~~DRv~Iy~f~~ 50 (194)
T d2oola1 4 NEFFRSVRVAIRRLQTAAD-----LPTACWIAASEVRRITGFDRIKVYQFAA 50 (194)
T ss_dssp HHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHHHHCCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 4577788888888888554 7889999999999999999755544443
No 9
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=13.95 E-value=31 Score=20.45 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=22.0
Q ss_pred hhHHHHHHHhCCCCCcccchhhhhhhhccc
Q 031239 131 QKVQLLGKALGIPENSVRTYTEAEIRAGYV 160 (163)
Q Consensus 131 ~~a~~LG~aLGi~~~av~~FtEa~IRAgvv 160 (163)
-+...|++.+|+++.+|.-=-......|++
T Consensus 18 ~s~~~lA~~~gls~~~v~~Ri~~L~~~giI 47 (60)
T d1i1ga1 18 TPFTEIAKKLGISETAVRKRVKALEEKGII 47 (60)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 367889999999999887655555555554
No 10
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.88 E-value=46 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHhhcc
Q 031239 15 LEDYLFVLLSRFLNALETKG 34 (163)
Q Consensus 15 lEdyaFVLLSR~ln~le~~g 34 (163)
=++-||||+-|+++.++..-
T Consensus 50 d~E~AYily~Ry~~L~eki~ 69 (134)
T d2a9ua1 50 DEERAYVLYMKYVTVYNLIK 69 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999997654
Done!