BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031240
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 1 MKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
++ KH+C+E NCPIC E I + VL CGH +H C +EM K Y CP+C
Sbjct: 130 LRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMH 188
Query: 61 SLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
S DM++ W ++D E+A TPMP+ YQN V ILCNDC S VQFH++ KC C SYNT
Sbjct: 189 SALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNT 248
Query: 121 RQTRG 125
Q G
Sbjct: 249 AQAGG 253
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 1 MKDKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
++ +H+C+E NCPIC E I + VL CGH +H C +EM K Y CP+C
Sbjct: 130 LQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCMH 188
Query: 61 SLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
S DM++ W ++D E+A TPMP+ YQN V ILCNDC S VQFH++ KC C+SYNT
Sbjct: 189 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 248
Query: 121 RQTRG 125
Q G
Sbjct: 249 AQAGG 253
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 3 DKHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62
+ HRC+ER+ NCPIC E++F++ + + L C H +H C +E + Y CP C K++
Sbjct: 258 NTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIR-TNYRCPTCYKTI 316
Query: 63 WDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNT 120
+++ L+ +D EI PMP Y + I CNDC + ++H + HKC SC SYNT
Sbjct: 317 INVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 4 KHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECL-KEMEKHYRYTCPVCSKSL 62
K + E +H C +C E F ++ + C H H +CL K +E R CP+C+ +
Sbjct: 66 KEKVKELNLHELCAVCLE-DFKPRDELGICPCKHAFHRKCLIKWLE--VRKVCPLCNMPV 122
Query: 63 WDMSKLWSKIDQEIASTPMPA 83
+++L SK D+ P+P
Sbjct: 123 LQLAQLHSKQDRGPPQGPLPG 143
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 4 KHRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECL-KEMEKHYRYTCPVCSKSL 62
K + E +H C +C E F ++ + C H H +CL K +E R CP+C+ +
Sbjct: 66 KEKVKELNLHELCAVCLE-DFKPRDELGICPCKHAFHRKCLVKWLE--VRKVCPLCNMPV 122
Query: 63 WDMSKLWSKIDQEIASTPMPA 83
+++L SK D+ P+P
Sbjct: 123 LQLAQLHSKQDRGPPQEPLPG 143
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSLWD---MSKLWSK 71
C IC +F FD +D+ + CGHT HL+CL + E TCP C + ++KL+
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKKTIINKLFFD 65
Query: 72 IDQE 75
+ QE
Sbjct: 66 LAQE 69
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKE-MEKHYRYTCPVC 58
C IC +F FD +D+ + CGHT HL+CL + E TCP C
Sbjct: 7 CTICSDF-FDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC 49
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ MK + C H H CLK+ + + TCP+C L + S
Sbjct: 528 EQLEKHNDICAICYQ----DMKSAVITPCSHFFHAGCLKKW-LYVQDTCPLCHCHLKNSS 582
Query: 67 KLWSKIDQEIASTPMPAMYQN 87
+L + E A P QN
Sbjct: 583 QL-PGLGTEAAPQPPAGAEQN 602
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM-EKHYRYTCPVCSKSLWD----MSKLWS 70
CP+C E KD ++ CGH C+ ++ E + CP C +S+ D ++++ +
Sbjct: 146 CPLCVEL----FKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESITDRKYTINRVLA 201
Query: 71 KIDQEIASTPM 81
+ ++ A TP+
Sbjct: 202 NLAKKAACTPV 212
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKID- 73
+CPIC + +T++ L CGHT+ CL ++ +R CP +D + + + I+
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP------FDQTTINTDIEL 63
Query: 74 -------QEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKC-----LSCKSYNTR 121
++ +P Q LC CGA + A KC L K +T
Sbjct: 64 LPVNSALLQLVGAQVPEQQQ----ITLCGGCGAEDTKHYEE-ARKCVEELALYLKPLSTA 118
Query: 122 QTRGDTATTCS 132
+ G +TT S
Sbjct: 119 RGVGLNSTTQS 129
>sp|Q23985|DTX_DROME Protein deltex OS=Drosophila melanogaster GN=dx PE=1 SV=2
Length = 738
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 16 CPICFEFIFDTMKD--ITVLRCGHTIHLECL--------KEMEKHYRYTCPVCS 59
CP+C E + + ++ I++ RC H +HL+CL EM K+ CPVC
Sbjct: 548 CPMCMEELVHSAQNPAISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPVCG 601
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 13 HHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWS 70
HN C ICF+ MK + C H H CLK+ + + TCP+C L S+L
Sbjct: 532 QHNDICSICFQ----DMKSAVITPCSHFFHAACLKKW-LYVQETCPLCHGQL--KSQLQP 584
Query: 71 KIDQEIASTPMPAMYQN 87
+ PA QN
Sbjct: 585 TSSPGTPTQGTPAANQN 601
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 36.6 bits (83), Expect = 0.073, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM--EKHYRYTCPVCSK 60
CPIC E + +L CGHTI +CL+++ CP CSK
Sbjct: 20 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 66
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKL--WSKI 72
CPIC E + K + + CGHT ECL+ + CP+C + +D K+ S +
Sbjct: 36 GCPICLEVYY---KPVAIGSCGHTFCGECLQPCLQVSSPLCPLC-RMPFDPKKVDKASNV 91
Query: 73 DQEIASTPMP 82
D++++S P
Sbjct: 92 DKQLSSYKAP 101
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 36.6 bits (83), Expect = 0.079, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEM--EKHYRYTCPVCSK 60
CPIC E + +L CGHTI +CL+++ CP CSK
Sbjct: 21 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 67
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ MK + C H H CLK+ + + TCP+C L + S
Sbjct: 528 EQLEKHNDICAICYQ----DMKSAVITPCSHFFHAGCLKKW-LYVQETCPLCHCHLKNSS 582
Query: 67 KLWSKIDQEIASTPMPAMYQNKM 89
+L + E P QN M
Sbjct: 583 QL-PGLGTEPVLQPHAGAEQNVM 604
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 9 ERAMHHNCPICFEFIFDT-MKDITVLRCGHTIHLECLKE-MEKHYRYTCPVCSKSL 62
++ M CPIC++ + + K T + CGH CL++ +E H TCP+C K +
Sbjct: 100 DQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENH--CTCPLCRKEV 153
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLK---EMEKHYRYTCPVCSKSLW 63
RA C IC E M L C H HL CL+ + + Y+CP C K L+
Sbjct: 331 RAYDDECAICRE----PMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLF 383
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58
+C IC E +F + K++ VL+CGH H C K+ K + CP C
Sbjct: 1956 SCEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLKG-QSACPAC 1996
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC----SKSLWDMSKLWS 70
CPIC E ++D + CGH L+C+ ++ K + CP+C +K+ + +KL +
Sbjct: 16 CPICMEI----LQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKLLA 71
Query: 71 KIDQEIAS 78
+ ++I S
Sbjct: 72 SLAEKIQS 79
>sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 OS=Rattus norvegicus
GN=Sh3rf2 PE=2 SV=1
Length = 735
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC 58
CP+CFE + T K VL C HT CL+ + K H CP C
Sbjct: 12 CPVCFEKLDVTAK---VLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCP 56
+CPIC + +T++ L CGHT+ CL ++ +R CP
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP 51
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCP 56
+CPIC + +T++ L CGHT+ CL ++ +R CP
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACP 51
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC 58
CP+CFE + T K VL C HT CL+ + K H CP C
Sbjct: 12 CPVCFEKLDVTAK---VLPCQHTFCKPCLQRVFKAHKELRCPEC 52
>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus
GN=Sh3rf2 PE=1 SV=2
Length = 735
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVC 58
CP+CFE + T K VL C HT CL+ + K H CP C
Sbjct: 12 CPVCFEKLDVTAK---VLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 33 LRCGHTIHLECLKE-MEKHYRYTCPVCSKSLWD 64
L CGH +HL CLK ME+ TCP+C ++D
Sbjct: 375 LPCGHILHLSCLKNWMER--SQTCPICRLPVFD 405
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 14 HNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 61
++C IC E IF + K++ VL+CGH H C K+ K + TCP C S
Sbjct: 1929 NSCEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLKG-QSTCPTCGSS 1973
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQE 75
CP+C E + + + C HT H +CL + K+ R CPVC S +S+ S + Q
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLNKW-KNSR--CPVCRHSSLRLSR-ESLLKQA 295
Query: 76 IASTPMPAMYQNKMVWI--LCNDCGANSHVQFHVIAH--KCLSCKSYNTRQTR 124
S +WI +C + G + H I H + L C + + R R
Sbjct: 296 GDSAHCATCGSTDNLWICLICGNVGCGRYNSKHAIKHYEETLHCFAMDIRTQR 348
>sp|P09108|RAPSN_TORCA 43 kDa receptor-associated protein of the synapse OS=Torpedo
californica GN=RAPSN PE=1 SV=3
Length = 412
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 5 HRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 61
H C+E M C +C E I D + L C H HL+CL + + CP C +S
Sbjct: 353 HECMED-MELYCGLCGESIGDQNSQLQALPCSHLFHLKCL---QTNGNRGCPNCKRS 405
>sp|Q8NEG5|ZSWM2_HUMAN E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1
SV=2
Length = 633
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 16 CPICFEFIFDTMKDITVLR--CGHTIHLECLKEMEKHYRYT-------CPVCSKSLWDMS 66
C IC E + + +T R CG++IH++C+K + +Y+ T CP+C K +
Sbjct: 147 CSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILA-NYQSTSNTSMLKCPLCRKEFAPLK 205
Query: 67 KLWSKIDQEIASTPMPAMYQNKM---VWILCNDCGANSHVQFHVIA--HKCLSCKSY 118
+ + +S + A + ++ + I CN+C QF + +KC C Y
Sbjct: 206 LILEEFKN--SSKLVAAAEKERLDKHLGIPCNNCK-----QFPIEGKCYKCTECIEY 255
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLE-CLKEMEKHYRYTCPVCSKSLWDMSKLW 69
C +CF D+ D + CGH C + + R CP+C + + D+ K++
Sbjct: 494 CTVCF----DSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKIY 544
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSLW 63
CPIC E ++ +L C H H CL+ EK + TCP+C K+ +
Sbjct: 127 CPICKEEF--ELRPQVLLSCSHVFHRACLQAFEKFTNKKTCPLCRKNQY 173
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 62
CPIC E K+ +L+CGH+ +CL + +H CPVC +S+
Sbjct: 15 QCPICLE----VFKEPLMLQCGHSYCKDCLDNLSQHLDSELCCPVCRQSV 60
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 20/65 (30%)
Query: 16 CPICFEFIF---------DTMK------DITVLR--CGHTIHLECLKE-MEKHYRYTCPV 57
C IC E +F D M+ D+T R CGH +H CL+ +E+ + TCP+
Sbjct: 292 CTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLER--QQTCPI 349
Query: 58 CSKSL 62
C +S+
Sbjct: 350 CRRSV 354
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSL 62
CPIC E K+ +L+CGH+ CL + +H CPVC +S+
Sbjct: 15 QCPICLE----VFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSV 60
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 32 VLRCGHTIHLECLKE-MEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMV 90
+L CGH +H CLK ME+ TCP+C S++ Q TP P + Q +
Sbjct: 342 MLPCGHMLHFGCLKSWMERS--QTCPICRLSVFANDSNSHATTQAREQTP-PDLLQER-- 396
Query: 91 WILCNDCGANSHVQFHVIAHKCLSCKSYN----TRQTRGDTATTCSSGDELTILSHH 143
G + H+ VI + +S +S + T RG T + + +LSH
Sbjct: 397 -------GIDEHID--VIGMQDMSVQSISLHEGTAVRRGTTGNCMNQAYDGGLLSHE 444
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSLW 63
CPIC E ++ +L C H H CL+ EK + TCP+C K+ +
Sbjct: 127 CPICKEEF--ELRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQY 173
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWDMSKLW 69
C +CF+ DT+ + CGH + C +++ R CP+C + + D+ K++
Sbjct: 503 CTVCFDGEVDTV----IYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIY 553
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVC------SKSLWDMS 66
CPIC E K+ +L+CGH+ CL + H + CP+C S SL ++S
Sbjct: 15 QCPICLE----VFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSSLPNVS 70
Query: 67 KLWSKIDQEIASTPMP----------AMYQNKMVWILCNDCGANSHVQFHVI 108
W + P P +++ K ++C CG Q H +
Sbjct: 71 LAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHHPV 122
>sp|Q8IWZ5|TRI42_HUMAN Tripartite motif-containing protein 42 OS=Homo sapiens GN=TRIM42
PE=2 SV=2
Length = 723
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYT-------CPVCSKS 61
H NCP+C + +L C H++ +CL++++KH T CPVC +S
Sbjct: 143 HLNCPMCSRLRLHSF----MLPCNHSLCEKCLRQLQKHAEVTENFFILICPVCDRS 194
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ M + C H H CLK+ + + TCP+C L +S
Sbjct: 528 EQLEQHNDICSICYQ----DMNSAVITPCSHFFHPGCLKKW-LYVQETCPLCHCQLKSLS 582
Query: 67 K 67
+
Sbjct: 583 Q 583
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 9 ERAMHHN--CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66
E+ HN C IC++ M + C H H CLK+ + + TCP+C L +S
Sbjct: 528 EQLEQHNDICSICYQ----DMNSAVITPCSHFFHPGCLKKW-LYVQETCPLCHCQLKSLS 582
Query: 67 K 67
+
Sbjct: 583 Q 583
>sp|Q5SBP5|GCS1_OCIBA Gamma-cadinene synthase OS=Ocimum basilicum GN=CDS PE=1 SV=1
Length = 540
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 1 MKDK-HRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCS 59
+KDK R +ER +H PI + F I++ ++ LK + ++ + +
Sbjct: 178 LKDKVKRALERPLHREVPILYARHF-----ISIYEKDESMDEHLLKLAKFNFNFLQNLYK 232
Query: 60 KSLWDMSKLWSKID 73
K L+D+S+ W+K D
Sbjct: 233 KELYDLSRWWNKFD 246
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVC------SKSLWDMS 66
CPIC E K+ +L+CGH+ CL + H + CP+C S SL ++S
Sbjct: 15 QCPICLE----VFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSSLPNVS 70
Query: 67 KLWSKIDQEIASTPMP----------AMYQNKMVWILCNDCGANSHVQFHVI 108
W + P P +++ K ++C CG Q H +
Sbjct: 71 LAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHHPV 122
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQ 74
+C +C + T +++ L C H H +CL+ +H + CP+C L D
Sbjct: 73 DCIVCLSKL-KTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHHQGHGSDA 131
Query: 75 EIASTPM 81
I++ P+
Sbjct: 132 SISAFPL 138
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 16 CPICFEFIFDTMKD-ITVLRCGHTIHLECLKEMEKHYRYTCPVCSK 60
C ICFE + ++ LRCGH +C+ + K CP C+K
Sbjct: 287 CTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQARKCPQCNK 332
>sp|Q13702|RAPSN_HUMAN 43 kDa receptor-associated protein of the synapse OS=Homo sapiens
GN=RAPSN PE=1 SV=4
Length = 412
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 5 HRCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKS 61
H CVE + C +C E I + + L C H HL CL + + +CP C +S
Sbjct: 353 HECVEETELY-CGLCGESIGEKNSRLQALPCSHIFHLRCL---QNNGTRSCPNCRRS 405
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 16 CPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDM 65
C +C +F+ + CGHT L+CL+ H + CP+C L ++
Sbjct: 449 CALCMRLLFEPV----TTPCGHTFCLKCLERCLDHAPH-CPLCKDKLSEL 493
>sp|Q9D9X6|ZSWM2_MOUSE E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus GN=Zswim2 PE=1
SV=1
Length = 631
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 16 CPICFEFIFDTMKDITVLR--CGHTIHLECLKEMEKHYRYT--------CPVCSKSLWDM 65
CPIC E + + +T R CG+ +H++C++ + +Y+ T CP+C + +
Sbjct: 147 CPICQEVLLEKKLPVTFCRFGCGNNVHIKCMRILA-NYQDTGSDSSVLRCPLCREEFAPL 205
Query: 66 SKLWSKIDQEIASTPMPAMYQ-NKMVWILCNDCGANSHVQFHVIAHKCLSCKSY 118
+ + + + +K + I CN+C + + +KC C Y
Sbjct: 206 KVILEEFKNSNKLITISEKERLDKHLGIPCNNC---NQLPIEGRCYKCTECVEY 256
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 16 CPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWDMSKLW 69
C IC+E DT+ + CGH + C ++K CP+C + + D+ K +
Sbjct: 521 CTICYEHAVDTV----IYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTY 571
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.133 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,556,762
Number of Sequences: 539616
Number of extensions: 2303905
Number of successful extensions: 7919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 7805
Number of HSP's gapped (non-prelim): 342
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)