Query 031240
Match_columns 163
No_of_seqs 266 out of 1634
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k2d_A Ring finger and CHY zin 99.9 4.3E-26 1.5E-30 154.6 1.8 75 55-129 1-75 (79)
2 2ecm_A Ring finger and CHY zin 99.5 1.4E-14 4.8E-19 90.1 3.8 52 10-62 2-53 (55)
3 2kiz_A E3 ubiquitin-protein li 99.4 2.3E-13 7.7E-18 88.4 4.3 53 9-63 10-62 (69)
4 1g25_A CDK-activating kinase a 99.4 2.7E-13 9.2E-18 87.3 4.2 51 13-63 3-54 (65)
5 2ep4_A Ring finger protein 24; 99.4 3E-13 1E-17 89.0 4.3 57 6-64 8-64 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.4 2.1E-13 7.1E-18 84.8 3.3 49 12-62 4-53 (55)
7 2ct2_A Tripartite motif protei 99.4 5.6E-13 1.9E-17 90.1 4.7 53 11-63 13-67 (88)
8 3ng2_A RNF4, snurf, ring finge 99.4 3E-13 1E-17 88.0 3.0 53 10-63 7-62 (71)
9 1v87_A Deltex protein 2; ring- 99.4 5.1E-13 1.8E-17 94.8 4.5 55 10-64 22-94 (114)
10 1x4j_A Ring finger protein 38; 99.3 2.9E-13 9.9E-18 89.5 2.8 52 11-64 21-72 (75)
11 2ea6_A Ring finger protein 4; 99.3 4.4E-13 1.5E-17 86.5 3.4 52 11-63 13-67 (69)
12 2ecl_A Ring-box protein 2; RNF 99.3 8.6E-13 2.9E-17 88.9 4.3 51 12-63 14-75 (81)
13 2l0b_A E3 ubiquitin-protein li 99.3 6.4E-13 2.2E-17 91.3 3.7 51 11-63 38-88 (91)
14 1t1h_A Gspef-atpub14, armadill 99.3 8.4E-13 2.9E-17 87.7 4.2 50 10-63 5-54 (78)
15 2csy_A Zinc finger protein 183 99.3 7.1E-13 2.4E-17 88.8 3.8 48 11-63 13-60 (81)
16 2xeu_A Ring finger protein 4; 99.3 6.7E-13 2.3E-17 84.5 3.4 51 12-63 2-55 (64)
17 2ect_A Ring finger protein 126 99.3 6.9E-13 2.4E-17 88.1 3.4 52 11-64 13-64 (78)
18 2ysl_A Tripartite motif-contai 99.3 1.9E-12 6.4E-17 84.7 5.1 49 11-63 18-68 (73)
19 2ecy_A TNF receptor-associated 99.3 8.1E-13 2.8E-17 85.2 3.2 49 11-63 13-61 (66)
20 2d8t_A Dactylidin, ring finger 99.3 8.8E-13 3E-17 86.3 3.1 48 11-63 13-60 (71)
21 2yur_A Retinoblastoma-binding 99.3 8.3E-13 2.8E-17 87.3 3.0 49 12-64 14-64 (74)
22 1e4u_A Transcriptional repress 99.3 2.3E-13 7.8E-18 91.6 -0.6 54 11-66 9-64 (78)
23 2djb_A Polycomb group ring fin 99.3 2.4E-12 8.2E-17 84.5 4.2 48 11-63 13-61 (72)
24 4ayc_A E3 ubiquitin-protein li 99.3 1.6E-12 5.5E-17 95.7 3.4 47 13-64 53-99 (138)
25 1chc_A Equine herpes virus-1 r 99.3 1.6E-12 5.3E-17 84.1 2.8 49 12-64 4-52 (68)
26 3lrq_A E3 ubiquitin-protein li 99.3 2.2E-12 7.6E-17 90.0 3.4 47 13-63 22-69 (100)
27 3fl2_A E3 ubiquitin-protein li 99.3 2.6E-12 8.7E-17 92.7 3.7 48 13-64 52-99 (124)
28 3ztg_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 86.8 4.3 48 11-62 11-60 (92)
29 2ysj_A Tripartite motif-contai 99.2 5E-12 1.7E-16 80.7 4.2 44 11-58 18-63 (63)
30 2ecw_A Tripartite motif-contai 99.2 1.1E-11 3.6E-16 82.9 4.6 48 12-63 18-70 (85)
31 2egp_A Tripartite motif-contai 99.2 1.8E-12 6E-17 86.0 0.6 49 11-63 10-64 (79)
32 1z6u_A NP95-like ring finger p 99.2 4.3E-12 1.5E-16 95.0 2.6 48 13-64 78-125 (150)
33 3dpl_R Ring-box protein 1; ubi 99.2 1.3E-11 4.3E-16 87.6 4.8 50 12-62 36-99 (106)
34 2ecn_A Ring finger protein 141 99.2 9.8E-13 3.3E-17 85.6 -1.2 48 11-64 13-60 (70)
35 2ecj_A Tripartite motif-contai 99.2 9.1E-12 3.1E-16 77.8 3.2 44 11-58 13-58 (58)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 9.2E-12 3.1E-16 89.5 3.5 52 11-63 5-59 (133)
37 3l11_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 91.1 0.5 48 12-63 14-61 (115)
38 2ecv_A Tripartite motif-contai 99.2 1.2E-11 4E-16 82.7 2.9 49 11-63 17-70 (85)
39 2y43_A E3 ubiquitin-protein li 99.2 1.6E-11 5.6E-16 85.0 3.7 46 13-63 22-68 (99)
40 2ckl_A Polycomb group ring fin 99.1 2.4E-11 8.1E-16 85.6 4.1 48 11-63 13-61 (108)
41 3hct_A TNF receptor-associated 99.1 2E-11 6.7E-16 87.5 3.5 49 12-64 17-65 (118)
42 1rmd_A RAG1; V(D)J recombinati 99.1 2.1E-11 7.1E-16 86.8 3.5 48 13-64 23-70 (116)
43 2ckl_B Ubiquitin ligase protei 99.1 3.3E-11 1.1E-15 90.9 3.7 47 13-63 54-101 (165)
44 1jm7_A BRCA1, breast cancer ty 99.1 2.6E-11 8.8E-16 85.4 2.5 47 13-63 21-69 (112)
45 2vje_A E3 ubiquitin-protein li 99.1 2.2E-11 7.4E-16 78.6 1.5 53 7-64 2-57 (64)
46 2kr4_A Ubiquitin conjugation f 99.0 1.1E-10 3.7E-15 79.3 3.6 47 12-63 13-59 (85)
47 1bor_A Transcription factor PM 99.0 2.2E-11 7.6E-16 76.4 -0.2 47 9-63 2-48 (56)
48 2d8s_A Cellular modulator of i 99.0 1.6E-10 5.6E-15 77.9 3.8 53 9-63 11-69 (80)
49 2c2l_A CHIP, carboxy terminus 99.0 2.8E-10 9.5E-15 91.1 5.6 51 9-63 204-254 (281)
50 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4.2E-15 83.5 2.9 53 10-63 69-124 (133)
51 4a0k_B E3 ubiquitin-protein li 99.0 4.3E-11 1.5E-15 86.4 0.4 50 12-62 47-110 (117)
52 3knv_A TNF receptor-associated 99.0 4.7E-11 1.6E-15 88.5 0.6 48 11-62 29-76 (141)
53 2kre_A Ubiquitin conjugation f 99.0 1.7E-10 5.8E-15 80.8 3.5 47 12-63 28-74 (100)
54 2vje_B MDM4 protein; proto-onc 99.0 7.2E-11 2.5E-15 75.9 1.1 49 11-64 5-56 (63)
55 4ic3_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 76.8 1.8 43 13-64 24-67 (74)
56 1wgm_A Ubiquitin conjugation f 99.0 3.7E-10 1.3E-14 78.8 3.8 47 12-63 21-68 (98)
57 3hcs_A TNF receptor-associated 99.0 3.3E-10 1.1E-14 85.6 3.6 50 11-64 16-65 (170)
58 1jm7_B BARD1, BRCA1-associated 98.9 8.2E-11 2.8E-15 84.1 -0.2 44 13-63 22-66 (117)
59 2yu4_A E3 SUMO-protein ligase 98.9 8E-10 2.7E-14 76.3 3.8 46 12-61 6-59 (94)
60 2y1n_A E3 ubiquitin-protein li 98.9 1.1E-09 3.7E-14 93.3 4.5 48 13-64 332-379 (389)
61 2f42_A STIP1 homology and U-bo 98.8 4.1E-09 1.4E-13 81.2 5.7 49 11-63 104-152 (179)
62 2ecg_A Baculoviral IAP repeat- 98.8 4.2E-10 1.4E-14 74.4 -0.0 43 13-64 25-68 (75)
63 2ea5_A Cell growth regulator w 98.8 1.6E-09 5.4E-14 70.7 1.3 46 11-65 13-59 (68)
64 1wim_A KIAA0161 protein; ring 98.7 8.4E-09 2.9E-13 70.8 4.3 50 11-61 3-61 (94)
65 2yho_A E3 ubiquitin-protein li 98.7 2.2E-09 7.5E-14 72.0 1.1 43 13-64 18-61 (79)
66 2ct0_A Non-SMC element 1 homol 98.7 1.3E-08 4.3E-13 67.7 3.6 49 11-62 13-62 (74)
67 3htk_C E3 SUMO-protein ligase 98.5 2.7E-08 9.1E-13 80.7 2.4 49 11-63 179-231 (267)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.5 5.4E-08 1.8E-12 62.0 3.0 50 9-62 2-57 (60)
69 3t6p_A Baculoviral IAP repeat- 98.4 4.2E-08 1.4E-12 82.5 0.6 43 13-64 295-338 (345)
70 3k1l_B Fancl; UBC, ring, RWD, 98.3 6.6E-08 2.2E-12 81.2 -0.2 54 10-63 305-372 (381)
71 2bay_A PRE-mRNA splicing facto 98.3 2.9E-07 9.9E-12 58.7 2.5 47 12-63 2-49 (61)
72 3vk6_A E3 ubiquitin-protein li 98.1 2E-06 6.7E-11 60.0 3.0 49 15-66 3-51 (101)
73 3c5k_A HD6, histone deacetylas 97.1 5.7E-05 2E-09 53.5 -0.3 59 91-152 24-84 (109)
74 2i50_A Ubiquitin carboxyl-term 96.9 0.00015 5.3E-09 52.5 0.3 95 31-153 3-107 (126)
75 2g45_A Ubiquitin carboxyl-term 96.9 0.00018 6.1E-09 52.4 0.4 57 93-152 36-105 (129)
76 3nw0_A Non-structural maintena 96.9 0.00052 1.8E-08 54.6 3.1 48 12-62 179-227 (238)
77 2uzg_A Ubiquitin carboxyl-term 96.3 0.0008 2.7E-08 46.5 0.6 59 92-152 26-88 (97)
78 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0038 1.3E-07 42.5 1.8 34 12-48 2-37 (101)
79 2ko5_A Ring finger protein Z; 95.5 0.003 1E-07 43.4 0.5 44 13-63 28-72 (99)
80 3ihp_A Ubiquitin carboxyl-term 95.0 0.0044 1.5E-07 57.4 0.3 101 32-152 173-286 (854)
81 2ida_A Hypothetical protein; z 92.9 0.0053 1.8E-07 42.8 -2.8 65 92-156 19-89 (102)
82 2lri_C Autoimmune regulator; Z 90.2 0.13 4.5E-06 32.7 1.9 45 11-61 10-59 (66)
83 1weo_A Cellulose synthase, cat 89.7 0.61 2.1E-05 31.5 4.8 55 8-62 11-68 (93)
84 2lbm_A Transcriptional regulat 88.5 0.76 2.6E-05 33.6 5.1 47 9-61 59-117 (142)
85 3v43_A Histone acetyltransfera 87.9 1.6 5.4E-05 30.1 6.3 48 12-59 4-62 (112)
86 2ysm_A Myeloid/lymphoid or mix 86.6 0.3 1E-05 33.7 1.9 47 11-59 5-55 (111)
87 2kdx_A HYPA, hydrogenase/ureas 86.0 0.26 8.7E-06 34.6 1.3 36 87-124 69-105 (119)
88 3a43_A HYPD, hydrogenase nicke 85.8 0.2 7E-06 36.3 0.7 37 88-124 67-122 (139)
89 2cs3_A Protein C14ORF4, MY039 84.5 0.49 1.7E-05 31.5 2.0 37 10-50 12-52 (93)
90 1f62_A Transcription factor WS 84.4 0.41 1.4E-05 28.3 1.5 44 15-61 2-50 (51)
91 2l5u_A Chromodomain-helicase-D 81.6 0.41 1.4E-05 29.7 0.7 46 9-60 7-57 (61)
92 2zjr_Z 50S ribosomal protein L 80.9 0.87 3E-05 28.4 2.1 30 89-123 28-57 (60)
93 1wil_A KIAA1045 protein; ring 77.9 1.5 5.1E-05 29.4 2.5 35 11-47 13-47 (89)
94 3i2d_A E3 SUMO-protein ligase 76.2 2.1 7.2E-05 36.0 3.6 48 12-62 248-298 (371)
95 4fo9_A E3 SUMO-protein ligase 75.6 2.3 7.8E-05 35.6 3.7 48 13-63 215-265 (360)
96 1mm2_A MI2-beta; PHD, zinc fin 75.3 0.31 1.1E-05 30.2 -1.3 48 10-61 6-56 (61)
97 3ql9_A Transcriptional regulat 74.3 2.3 7.7E-05 30.5 2.9 47 9-61 53-111 (129)
98 2kwj_A Zinc finger protein DPF 74.1 2.7 9.3E-05 29.0 3.3 46 14-59 2-59 (114)
99 3u5n_A E3 ubiquitin-protein li 73.3 0.64 2.2E-05 35.5 -0.2 46 10-61 4-54 (207)
100 3v2d_5 50S ribosomal protein L 72.9 1.1 3.8E-05 27.9 0.9 29 90-123 29-57 (60)
101 3m62_A Ubiquitin conjugation f 70.1 4.1 0.00014 38.3 4.3 48 11-63 889-937 (968)
102 2ku3_A Bromodomain-containing 68.6 1.3 4.4E-05 28.4 0.5 50 10-60 13-65 (71)
103 4b2u_A S67; toxin, ICK; NMR {S 68.1 1.5 5.1E-05 23.7 0.6 24 139-162 12-35 (36)
104 2yt5_A Metal-response element- 66.3 0.53 1.8E-05 29.3 -1.7 50 11-61 4-61 (66)
105 3mjh_B Early endosome antigen 66.2 2.6 8.9E-05 23.2 1.3 16 52-67 5-20 (34)
106 2l43_A N-teminal domain from h 64.2 1.7 5.8E-05 28.9 0.4 49 11-61 23-75 (88)
107 2e6s_A E3 ubiquitin-protein li 64.0 1.7 5.7E-05 28.3 0.3 45 13-60 26-76 (77)
108 3mhs_A Ubiquitin carboxyl-term 63.8 0.91 3.1E-05 38.4 -1.3 60 92-152 49-108 (476)
109 2k16_A Transcription initiatio 63.6 2.9 0.0001 26.5 1.5 46 13-61 18-68 (75)
110 1fp0_A KAP-1 corepressor; PHD 62.3 1.4 4.8E-05 29.5 -0.3 47 11-61 23-72 (88)
111 2jvx_A NF-kappa-B essential mo 62.0 2 6.8E-05 22.7 0.3 17 52-68 3-19 (28)
112 3o36_A Transcription intermedi 62.0 1.2 4.1E-05 33.3 -0.8 47 12-62 3-52 (184)
113 2ffw_A Midline-1; B-BOX, ring 61.9 2.2 7.4E-05 27.6 0.6 48 90-141 29-78 (78)
114 3lqh_A Histone-lysine N-methyl 61.6 3.1 0.00011 31.4 1.5 51 14-64 3-66 (183)
115 3shb_A E3 ubiquitin-protein li 61.5 1.3 4.5E-05 28.8 -0.6 43 15-60 28-76 (77)
116 2csv_A Tripartite motif protei 61.5 3.4 0.00012 25.9 1.5 26 134-162 5-34 (72)
117 3asl_A E3 ubiquitin-protein li 60.4 1.8 6.3E-05 27.4 0.0 44 15-61 20-69 (70)
118 1we9_A PHD finger family prote 59.2 0.67 2.3E-05 28.7 -2.2 51 11-61 4-58 (64)
119 2yql_A PHD finger protein 21A; 58.3 0.38 1.3E-05 29.2 -3.4 46 11-60 7-55 (56)
120 1z2q_A LM5-1; membrane protein 57.0 4 0.00014 26.6 1.3 38 8-46 16-54 (84)
121 1xwh_A Autoimmune regulator; P 56.3 0.72 2.5E-05 28.9 -2.4 48 10-61 5-55 (66)
122 3t7l_A Zinc finger FYVE domain 56.2 3.8 0.00013 27.2 1.0 38 10-47 17-54 (90)
123 3v43_A Histone acetyltransfera 55.9 1.9 6.5E-05 29.7 -0.5 44 15-60 63-111 (112)
124 2puy_A PHD finger protein 21A; 55.4 0.8 2.7E-05 28.1 -2.3 46 11-60 3-51 (60)
125 2yw8_A RUN and FYVE domain-con 54.9 4.2 0.00014 26.4 1.1 39 8-46 14-52 (82)
126 3uk3_C Zinc finger protein 217 54.6 19 0.00066 19.9 4.0 16 52-67 4-19 (57)
127 1x4u_A Zinc finger, FYVE domai 53.3 4.5 0.00015 26.3 1.0 38 8-45 9-46 (84)
128 1joc_A EEA1, early endosomal a 53.0 4.4 0.00015 28.5 1.0 37 9-45 65-101 (125)
129 3h0g_L DNA-directed RNA polyme 52.4 8.1 0.00028 24.2 2.1 28 89-117 19-46 (63)
130 1wen_A Inhibitor of growth fam 51.9 6.6 0.00023 24.9 1.6 45 12-61 15-65 (71)
131 3a1b_A DNA (cytosine-5)-methyl 51.6 15 0.00052 27.1 3.8 49 8-61 74-134 (159)
132 2ct7_A Ring finger protein 31; 50.8 1.3 4.5E-05 29.1 -1.9 40 16-55 28-70 (86)
133 2gmg_A Hypothetical protein PF 50.4 9.1 0.00031 26.4 2.2 34 88-122 64-97 (105)
134 2ro1_A Transcription intermedi 49.2 2.3 7.7E-05 32.1 -1.1 45 13-61 2-49 (189)
135 1wev_A Riken cDNA 1110020M19; 48.5 0.79 2.7E-05 30.5 -3.4 48 12-61 15-72 (88)
136 2fiy_A Protein FDHE homolog; F 47.1 6.5 0.00022 32.1 1.2 26 89-118 206-231 (309)
137 2lv9_A Histone-lysine N-methyl 46.1 14 0.00048 24.7 2.7 46 14-63 29-78 (98)
138 1vq8_1 50S ribosomal protein L 45.7 9.8 0.00033 23.4 1.6 27 87-116 13-39 (57)
139 1bbo_A Human enhancer-binding 45.4 18 0.00062 20.1 2.8 14 53-66 2-15 (57)
140 1twf_L ABC10-alpha, DNA-direct 45.1 8.8 0.0003 24.4 1.4 29 88-117 25-53 (70)
141 2k5c_A Uncharacterized protein 43.7 10 0.00035 25.1 1.6 10 53-62 9-18 (95)
142 2jrp_A Putative cytoplasmic pr 43.3 1.2 4E-05 29.5 -3.1 12 12-23 1-12 (81)
143 1zfo_A LAsp-1; LIM domain, zin 42.9 5 0.00017 21.1 -0.0 29 12-43 2-30 (31)
144 3iz5_l 60S ribosomal protein L 42.2 13 0.00045 25.0 1.9 26 88-116 13-38 (94)
145 1k81_A EIF-2-beta, probable tr 42.0 6.1 0.00021 21.8 0.2 10 108-117 20-29 (36)
146 2cup_A Skeletal muscle LIM-pro 41.1 12 0.0004 24.4 1.6 40 12-62 4-43 (101)
147 4a18_A RPL37, ribosomal protei 39.9 14 0.00046 25.0 1.7 29 88-119 13-48 (94)
148 2lce_A B-cell lymphoma 6 prote 39.3 31 0.0011 20.4 3.4 16 52-67 17-32 (74)
149 2jne_A Hypothetical protein YF 38.7 1.5 5.3E-05 30.0 -3.1 41 12-62 31-71 (101)
150 1znf_A 31ST zinc finger from X 38.6 20 0.00068 16.2 1.9 13 53-65 2-14 (27)
151 2e6r_A Jumonji/ARID domain-con 38.0 2.2 7.4E-05 28.6 -2.5 45 13-60 16-65 (92)
152 2d8v_A Zinc finger FYVE domain 37.5 12 0.00042 23.7 1.1 34 10-48 5-39 (67)
153 2vnf_A ING 4, P29ING4, inhibit 37.3 3.7 0.00013 25.1 -1.3 41 13-60 10-58 (60)
154 1zbd_B Rabphilin-3A; G protein 37.3 7.8 0.00027 27.7 0.2 50 12-61 54-107 (134)
155 4gzn_C ZFP-57, zinc finger pro 36.3 25 0.00085 20.9 2.5 15 53-67 5-19 (60)
156 1wep_A PHF8; structural genomi 36.0 18 0.0006 23.0 1.8 48 12-62 11-64 (79)
157 1vfy_A Phosphatidylinositol-3- 36.0 12 0.0004 23.6 0.9 33 13-45 11-43 (73)
158 1klr_A Zinc finger Y-chromosom 35.9 33 0.0011 15.6 2.6 15 53-67 3-17 (30)
159 1weu_A Inhibitor of growth fam 35.8 9.6 0.00033 25.5 0.5 43 13-61 36-85 (91)
160 1y02_A CARP2, FYVE-ring finger 35.7 9.4 0.00032 26.8 0.4 49 9-58 15-63 (120)
161 3c6w_A P28ING5, inhibitor of g 35.6 4.4 0.00015 24.8 -1.2 45 11-60 7-57 (59)
162 2adr_A ADR1; transcription reg 34.6 30 0.001 19.3 2.6 14 53-66 3-16 (60)
163 1vd4_A Transcription initiatio 34.2 19 0.00064 21.0 1.6 13 52-64 14-26 (62)
164 2m0e_A Zinc finger and BTB dom 34.1 26 0.0009 15.8 2.0 14 53-66 3-16 (29)
165 2pv0_B DNA (cytosine-5)-methyl 33.8 34 0.0012 28.8 3.6 52 7-62 87-149 (386)
166 1ard_A Yeast transcription fac 33.8 32 0.0011 15.6 2.3 14 53-66 3-16 (29)
167 2kmk_A Zinc finger protein GFI 33.7 36 0.0012 20.1 3.0 16 52-67 29-44 (82)
168 1wfk_A Zinc finger, FYVE domai 33.4 12 0.00042 24.6 0.7 35 12-46 8-42 (88)
169 2dja_A Midline-2; tripartite m 33.3 16 0.00054 23.2 1.2 16 144-162 19-35 (84)
170 1wig_A KIAA1808 protein; LIM d 33.2 15 0.0005 22.7 1.0 38 13-63 5-42 (73)
171 3j20_Y 30S ribosomal protein S 33.1 19 0.00066 21.2 1.5 25 92-116 20-44 (50)
172 1p7a_A BF3, BKLF, kruppel-like 33.1 26 0.00088 17.4 1.9 15 52-66 11-25 (37)
173 1x63_A Skeletal muscle LIM-pro 32.9 40 0.0014 20.8 3.2 42 11-63 13-54 (82)
174 2ctd_A Zinc finger protein 512 32.9 38 0.0013 21.8 3.1 18 51-68 33-51 (96)
175 1rim_A E6APC2 peptide; E6-bind 32.5 48 0.0016 16.1 3.1 16 53-68 3-18 (33)
176 4gut_A Lysine-specific histone 31.6 78 0.0027 28.7 5.9 89 3-99 3-103 (776)
177 1gh9_A 8.3 kDa protein (gene M 31.3 8.8 0.0003 24.5 -0.3 56 91-148 4-60 (71)
178 3ask_A E3 ubiquitin-protein li 31.2 7.8 0.00027 30.3 -0.7 45 14-61 175-225 (226)
179 1fre_A Nuclear factor XNF7; zi 30.0 17 0.00059 19.8 0.9 16 144-162 4-19 (42)
180 1wyh_A SLIM 2, skeletal muscle 29.8 30 0.001 20.8 2.1 40 13-63 5-44 (72)
181 1x6e_A Zinc finger protein 24; 29.5 24 0.00082 20.8 1.6 13 52-64 14-26 (72)
182 3j21_e 50S ribosomal protein L 29.4 22 0.00075 22.1 1.3 24 90-116 16-39 (62)
183 1g47_A Pinch protein; LIM doma 29.3 27 0.00091 21.3 1.8 42 11-63 9-50 (77)
184 2kgg_A Histone demethylase jar 29.2 7.5 0.00026 22.9 -0.8 43 15-59 4-52 (52)
185 2zkr_2 60S ribosomal protein L 28.7 34 0.0012 23.2 2.3 26 88-116 13-38 (97)
186 2epq_A POZ-, at HOOK-, and zin 28.3 34 0.0012 17.9 2.0 15 52-66 10-24 (45)
187 2emz_A ZFP-95, zinc finger pro 27.4 72 0.0025 16.6 3.8 17 52-68 12-28 (46)
188 2ri7_A Nucleosome-remodeling f 27.4 14 0.00049 26.8 0.3 47 11-61 6-59 (174)
189 1x4k_A Skeletal muscle LIM-pro 27.3 30 0.001 20.8 1.7 40 13-63 5-44 (72)
190 2dlq_A GLI-kruppel family memb 27.2 74 0.0025 20.3 3.9 61 52-120 35-106 (124)
191 2jmo_A Parkin; IBR, E3 ligase, 27.2 3.2 0.00011 26.9 -3.0 15 34-48 55-69 (80)
192 2dar_A PDZ and LIM domain prot 27.1 31 0.0011 21.9 1.9 40 11-63 23-62 (90)
193 1paa_A Yeast transcription fac 27.1 32 0.0011 15.8 1.6 13 53-65 3-15 (30)
194 2elr_A Zinc finger protein 406 27.1 46 0.0016 16.1 2.3 16 52-67 9-24 (36)
195 2cu8_A Cysteine-rich protein 2 26.8 26 0.00089 21.5 1.4 40 12-63 8-47 (76)
196 3mpx_A FYVE, rhogef and PH dom 26.7 14 0.00046 30.6 0.0 35 12-46 374-408 (434)
197 2egm_A Tripartite motif-contai 26.5 36 0.0012 20.1 1.9 17 143-162 18-34 (57)
198 2ytm_A Zinc finger protein 28 26.4 76 0.0026 16.5 3.4 17 52-68 12-28 (46)
199 1llm_C Chimera of ZIF23-GCN4; 26.2 53 0.0018 20.0 2.9 10 53-62 32-41 (88)
200 2d9h_A Zinc finger protein 692 25.7 55 0.0019 19.4 2.8 16 52-67 7-22 (78)
201 2eou_A Zinc finger protein 473 25.7 76 0.0026 16.3 3.2 17 52-68 12-28 (44)
202 2ee8_A Protein ODD-skipped-rel 25.6 60 0.002 20.3 3.1 13 52-64 45-57 (106)
203 2kvf_A Zinc finger and BTB dom 25.6 21 0.00073 16.3 0.6 13 53-65 4-16 (28)
204 2d74_B Translation initiation 25.5 43 0.0015 24.3 2.5 32 92-123 105-139 (148)
205 2lvu_A Zinc finger and BTB dom 30.8 15 0.00052 16.6 0.0 12 53-64 3-14 (26)
206 1x4l_A Skeletal muscle LIM-pro 24.7 44 0.0015 20.1 2.2 42 12-62 4-45 (72)
207 1x61_A Thyroid receptor intera 24.7 37 0.0013 20.4 1.8 40 12-62 4-43 (72)
208 2did_A Tripartite motif protei 24.7 24 0.00081 20.3 0.8 16 144-162 9-24 (53)
209 4ayb_P DNA-directed RNA polyme 24.7 5.8 0.0002 23.5 -1.9 27 33-62 7-33 (48)
210 2kvh_A Zinc finger and BTB dom 24.6 22 0.00075 16.2 0.6 14 53-66 4-17 (27)
211 2yte_A Zinc finger protein 473 24.5 42 0.0014 17.0 1.9 16 52-67 10-25 (42)
212 1iml_A CRIP, cysteine rich int 24.3 27 0.00092 21.4 1.1 37 15-63 2-38 (76)
213 1a1h_A QGSR zinc finger peptid 24.0 62 0.0021 19.5 2.9 16 52-67 34-49 (90)
214 2eos_A B-cell lymphoma 6 prote 24.0 47 0.0016 17.0 2.0 15 52-66 11-25 (42)
215 2eom_A ZFP-95, zinc finger pro 23.8 75 0.0026 16.6 2.9 17 52-68 12-28 (46)
216 2g6q_A Inhibitor of growth pro 23.8 9.4 0.00032 23.5 -1.2 43 13-60 11-59 (62)
217 2ytt_A Zinc finger protein 473 23.7 87 0.003 16.2 3.4 17 52-68 12-28 (46)
218 2xqn_T Testin, TESS; metal-bin 23.6 50 0.0017 22.2 2.5 26 34-62 48-73 (126)
219 2pk7_A Uncharacterized protein 23.5 41 0.0014 21.1 1.8 11 52-62 8-18 (69)
220 2ytb_A Zinc finger protein 32; 23.5 39 0.0013 17.2 1.6 15 52-66 11-25 (42)
221 2yti_A Zinc finger protein 347 23.2 56 0.0019 17.0 2.2 15 52-66 12-26 (46)
222 2en9_A Zinc finger protein 28 23.0 73 0.0025 16.6 2.7 17 52-68 12-28 (46)
223 2eoq_A Zinc finger protein 224 22.9 57 0.002 17.0 2.3 17 52-68 12-28 (46)
224 2eoh_A Zinc finger protein 28 22.9 57 0.002 17.0 2.3 16 52-67 12-27 (46)
225 2k4x_A 30S ribosomal protein S 22.8 41 0.0014 20.1 1.7 25 92-116 19-43 (55)
226 2eq2_A Zinc finger protein 347 22.6 57 0.002 17.0 2.2 16 52-67 12-27 (46)
227 2en7_A Zinc finger protein 268 22.5 56 0.0019 16.7 2.1 15 52-66 12-26 (44)
228 2lv2_A Insulinoma-associated p 22.4 18 0.00061 23.3 -0.1 13 53-65 29-41 (85)
229 1dvp_A HRS, hepatocyte growth 22.4 21 0.00072 27.1 0.3 33 13-45 161-193 (220)
230 1qxf_A GR2, 30S ribosomal prot 22.2 35 0.0012 21.5 1.3 34 89-122 5-39 (66)
231 1x68_A FHL5 protein; four-and- 22.2 52 0.0018 20.1 2.2 61 13-100 5-65 (76)
232 2lcq_A Putative toxin VAPC6; P 22.2 33 0.0011 24.6 1.4 28 90-119 131-158 (165)
233 2vpb_A Hpygo1, pygopus homolog 22.1 40 0.0014 20.7 1.6 34 12-45 7-41 (65)
234 3zyq_A Hepatocyte growth facto 22.0 23 0.00078 27.2 0.5 33 13-45 164-196 (226)
235 1pft_A TFIIB, PFTFIIBN; N-term 21.9 42 0.0014 19.2 1.6 7 110-116 25-31 (50)
236 2eon_A ZFP-95, zinc finger pro 21.8 52 0.0018 17.3 1.9 15 52-66 12-26 (46)
237 2enf_A Zinc finger protein 347 21.7 52 0.0018 17.1 1.9 15 52-66 12-26 (46)
238 2zet_C Melanophilin; complex, 21.6 30 0.001 25.2 1.0 49 12-61 67-117 (153)
239 2emk_A Zinc finger protein 28 21.5 75 0.0026 16.5 2.6 17 52-68 12-28 (46)
240 2egq_A FHL1 protein; LIM domai 21.4 53 0.0018 19.9 2.1 44 11-63 13-57 (77)
241 2m0f_A Zinc finger and BTB dom 21.3 27 0.00092 15.8 0.5 14 53-66 3-16 (29)
242 2epr_A POZ-, at HOOK-, and zin 21.3 16 0.00056 19.8 -0.4 14 52-65 12-25 (48)
243 2jr6_A UPF0434 protein NMA0874 21.3 41 0.0014 21.1 1.5 11 52-62 8-18 (68)
244 2ytr_A Zinc finger protein 347 21.3 62 0.0021 16.8 2.2 15 52-66 12-26 (46)
245 2elx_A Zinc finger protein 406 21.3 28 0.00097 16.8 0.6 15 52-66 7-21 (35)
246 2em0_A Zinc finger protein 224 21.3 65 0.0022 16.7 2.3 16 52-67 12-27 (46)
247 2hf1_A Tetraacyldisaccharide-1 21.3 39 0.0013 21.1 1.4 10 53-62 9-18 (68)
248 1x64_A Alpha-actinin-2 associa 21.1 57 0.002 20.6 2.3 40 11-63 23-62 (89)
249 2yvr_A Transcription intermedi 21.0 32 0.0011 19.4 0.9 17 143-162 6-23 (50)
250 2o35_A Hypothetical protein DU 21.0 36 0.0012 23.3 1.2 13 38-50 42-54 (105)
251 3fyb_A Protein of unknown func 20.9 36 0.0012 23.2 1.2 12 38-49 41-52 (104)
252 2yrg_A Tripartite motif-contai 20.8 29 0.00098 20.7 0.7 16 144-162 15-30 (59)
253 2lvt_A Zinc finger and BTB dom 26.2 21 0.00071 16.5 0.0 12 53-64 3-14 (29)
254 2kvg_A Zinc finger and BTB dom 20.7 20 0.00067 16.6 -0.1 13 53-65 4-16 (27)
255 1rik_A E6APC1 peptide; E6-bind 20.7 26 0.00088 16.0 0.4 13 53-65 3-15 (29)
256 2e5r_A Dystrobrevin alpha; ZZ 20.6 40 0.0014 20.6 1.3 28 92-122 12-39 (63)
257 2cuq_A Four and A half LIM dom 20.6 51 0.0017 20.2 1.9 38 12-62 14-51 (80)
258 2ep1_A Zinc finger protein 484 20.5 67 0.0023 16.6 2.2 16 52-67 12-27 (46)
259 2epx_A Zinc finger protein 28 20.4 60 0.0021 16.9 2.0 16 52-67 12-27 (47)
260 2d8z_A Four and A half LIM dom 20.3 61 0.0021 19.2 2.2 37 13-62 5-41 (70)
261 2yth_A Zinc finger protein 224 20.3 60 0.0021 16.9 2.0 16 52-67 12-27 (46)
262 2emg_A Zinc finger protein 484 20.3 57 0.0019 17.0 1.9 15 52-66 12-26 (46)
263 2eq1_A Zinc finger protein 347 20.2 67 0.0023 16.7 2.2 15 52-66 12-26 (46)
264 1dl6_A Transcription factor II 20.2 56 0.0019 19.6 1.9 9 90-98 29-37 (58)
265 2eov_A Zinc finger protein 484 20.1 79 0.0027 16.3 2.5 16 52-67 12-27 (46)
266 2dlk_A Novel protein; ZF-C2H2 20.1 78 0.0027 18.5 2.7 17 52-68 38-56 (79)
No 1
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=4.3e-26 Score=154.65 Aligned_cols=75 Identities=47% Similarity=0.836 Sum_probs=40.1
Q ss_pred CCCCCCCccchhHHHHhHHHHHhcCCCChhhhcCcceeeCCCCCCCCcccceeeeccCCCCCCCccccccCCCCC
Q 031240 55 CPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRGDTAT 129 (163)
Q Consensus 55 CPiCr~~~~~~~~~~~~l~~~~~~~~~p~e~~~~~~~i~C~dC~~~~~~~~h~~~~kC~~C~synt~~~~~~~~~ 129 (163)
||+|++++.||+..|++||++++.++||++|++++++|+||||++++.+.|||+|+||+.|+||||+++++...+
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~ 75 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRIS 75 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999865543
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=1.4e-14 Score=90.06 Aligned_cols=52 Identities=40% Similarity=0.793 Sum_probs=45.1
Q ss_pred CCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
++.+..|+||++.+.++...++.++|||.||..|+.+|+... .+||+||+.+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 356789999999976666678899999999999999999854 8999999876
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=88.45 Aligned_cols=53 Identities=25% Similarity=0.597 Sum_probs=43.5
Q ss_pred cCCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+...+..|+||++.+. ....++.++|||.||..||.+|+.. ..+||+||+.+.
T Consensus 10 ~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILE-EGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCC-SSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCcccc-CCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence 3456789999999853 3466788999999999999999985 468999999873
No 4
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=2.7e-13 Score=87.28 Aligned_cols=51 Identities=25% Similarity=0.509 Sum_probs=41.9
Q ss_pred ccccccccc-cccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFE-FIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e-~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+..||||++ .+.+.....++++|||+||..|+.+|+..+..+||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 578999999 665444444678999999999999997766678999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=89.01 Aligned_cols=57 Identities=25% Similarity=0.628 Sum_probs=45.7
Q ss_pred ceecCCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 6 RCVERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 6 ~c~e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+-.+...+..|+||++.+. ......+++|||.||..||.+|+.. ..+||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFK-PRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCC-SSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccccCCCCCCCcCCCcccC-CCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3345566889999999854 3455677899999999999999985 4689999998754
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=2.1e-13 Score=84.76 Aligned_cols=49 Identities=29% Similarity=0.673 Sum_probs=40.6
Q ss_pred CccccccccccccCcCCccEEec-CCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~-CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
.+..|+||++.+.+ ...+..++ |||.||..|+.+|+.. +.+||+||+.+
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 46789999998644 34567776 9999999999999974 57899999876
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.6e-13 Score=90.07 Aligned_cols=53 Identities=34% Similarity=0.671 Sum_probs=44.0
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcC--CCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~--~~~CPiCr~~~~ 63 (163)
..+..|+||++.+.+....++.++|||+||..|+.+|+... ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34678999999875554458899999999999999999753 478999999873
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=3e-13 Score=88.04 Aligned_cols=53 Identities=30% Similarity=0.647 Sum_probs=42.9
Q ss_pred CCCccccccccccccCc---CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 10 RAMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s---~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+.+..|+||++.+.+. ...++.++|||+||..|+.+|+.. ..+||+||+.+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccC
Confidence 45678999999986432 234478899999999999999984 479999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=5.1e-13 Score=94.81 Aligned_cols=55 Identities=27% Similarity=0.489 Sum_probs=42.1
Q ss_pred CCCccccccccccccCcC--------------CccEEecCCChhhHHHHHHHHhc----CCCCCCCCCCCccc
Q 031240 10 RAMHHNCPICFEFIFDTM--------------KDITVLRCGHTIHLECLKEMEKH----YRYTCPVCSKSLWD 64 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~--------------~~~~~L~CGH~fh~~Cl~~~~~~----~~~~CPiCr~~~~~ 64 (163)
...+..|+||++.|.+.. ...++++|||.||..||.+|+.. ...+||+||+.+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 445679999999874321 23347899999999999999952 35789999998743
No 10
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-13 Score=89.48 Aligned_cols=52 Identities=25% Similarity=0.546 Sum_probs=42.7
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
..+..|+||++.+. ....++.++|||.||..||.+|+.. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45678999999853 3455678999999999999999984 4789999998743
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.4e-13 Score=86.53 Aligned_cols=52 Identities=31% Similarity=0.665 Sum_probs=42.1
Q ss_pred CCccccccccccccCc---CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s---~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+.+. .+.++.++|||.||..||.+|+.. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 4567899999986432 233478899999999999999985 578999999863
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.6e-13 Score=88.94 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=38.1
Q ss_pred CccccccccccccC----------cCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFD----------TMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~----------s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+..|+||++.|.+ ....++.+ +|||.||..||.+|+.. +.+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 45678888877533 22334455 69999999999999985 479999999863
No 13
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=6.4e-13 Score=91.31 Aligned_cols=51 Identities=29% Similarity=0.482 Sum_probs=42.1
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+.+ ...++.++|||.||..||.+|+. .+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 356789999998543 35577899999999999999998 4579999999864
No 14
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.33 E-value=8.4e-13 Score=87.69 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=43.2
Q ss_pred CCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
-..+..||||++.| .+|++++|||+||..||.+|+..+..+||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~----~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELM----KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCC----SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccc----cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34578999999874 567889999999999999999865789999999874
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=88.82 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=41.0
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ ..+++++|||+||..|+.+|+.. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF----QNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC----CSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh----cCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3467899999874 55778999999999999999974 578999999975
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=6.7e-13 Score=84.46 Aligned_cols=51 Identities=31% Similarity=0.683 Sum_probs=41.8
Q ss_pred CccccccccccccCc---CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s---~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+..|+||++.+.+. .+.++.++|||.||..|+.+|+.. ..+||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCC
Confidence 467899999986432 244578899999999999999985 579999999874
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=6.9e-13 Score=88.09 Aligned_cols=52 Identities=31% Similarity=0.604 Sum_probs=42.5
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
..+..|+||++.+. ....+..++|||.||..||.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA-LGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC-TTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc-CCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 34679999999853 3355677899999999999999974 5799999999743
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=84.75 Aligned_cols=49 Identities=27% Similarity=0.813 Sum_probs=41.2
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc--CCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH--YRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~--~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ .+++.++|||+||..|+.+|+.. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBC----SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCccc----CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4567999999873 56788999999999999999963 4578999999873
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=8.1e-13 Score=85.24 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=41.0
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ .+++.++|||+||..|+.+|+.....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVL----CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEE----SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHh----cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3468899999874 455668999999999999999656688999999874
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=8.8e-13 Score=86.34 Aligned_cols=48 Identities=21% Similarity=0.460 Sum_probs=40.9
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ ..++.++|||.||..||.+|+.. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBC----SSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCC
T ss_pred CCCCCCccCCccc----CCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhC
Confidence 4567899999874 55688999999999999999874 478999999874
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=8.3e-13 Score=87.29 Aligned_cols=49 Identities=27% Similarity=0.579 Sum_probs=40.8
Q ss_pred CccccccccccccCcCCccEEec-CCChhhHHHHHHHHhcC-CCCCCCCCCCccc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKHY-RYTCPVCSKSLWD 64 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~-CGH~fh~~Cl~~~~~~~-~~~CPiCr~~~~~ 64 (163)
.+..|+||++.+ .+++.++ |||+||..||.+|+... ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIM----TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCC----TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHH----hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 467999999874 5678899 99999999999999753 3689999998643
No 22
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.28 E-value=2.3e-13 Score=91.61 Aligned_cols=54 Identities=26% Similarity=0.563 Sum_probs=42.3
Q ss_pred CCccccccccccccCcCCccEEec--CCChhhHHHHHHHHhcCCCCCCCCCCCccchh
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLR--CGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~--CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~~~ 66 (163)
..+..||||+|.+. ..++..++ |||+||..|+.+++......||+||+.+....
T Consensus 9 ~~~~~CpICle~~~--~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLE--IDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCC--TTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCc--cccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45789999999752 23444554 99999999999998666789999999986543
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=84.46 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=40.1
Q ss_pred CCccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ .+++.+ +|||+||..||.+|+.. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 61 (72)
T 2djb_A 13 TPYILCSICKGYL----IDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVH 61 (72)
T ss_dssp CGGGSCTTTSSCC----SSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCCCCChHH----HCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccC
Confidence 3467999999874 446666 99999999999999974 579999999874
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.6e-12 Score=95.65 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=40.3
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..||||++.+ .+|++++|||+||..||..|+.. ..+||+||+.+..
T Consensus 53 ~~~C~iC~~~~----~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBC----SSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCccc----CCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 45799999874 56788999999999999999974 5789999999853
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=1.6e-12 Score=84.08 Aligned_cols=49 Identities=27% Similarity=0.595 Sum_probs=40.7
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
.+..|+||++.+ ..+++.++|||.||..|+.+|+.. ..+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~---~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDP---SNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCC---CSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccc---cCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999974 233578899999999999999974 4799999998754
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=90.04 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=40.7
Q ss_pred ccccccccccccCcCCccEE-ecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITV-LRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~-L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+..|+||++.+ .+++. ++|||+||..||.+|+......||+||+.+.
T Consensus 22 ~~~C~IC~~~~----~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKL----RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccc----cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 57899999874 45677 9999999999999999865579999999984
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=92.72 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=41.5
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..||||++.+ .+|++++|||+||..||..|+......||+||+.+..
T Consensus 52 ~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC----SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHH----cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 56799999874 5678899999999999999998666799999999854
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=4.2e-12 Score=86.80 Aligned_cols=48 Identities=27% Similarity=0.601 Sum_probs=40.7
Q ss_pred CCccccccccccccCcCCccEEec-CCChhhHHHHHHHHhc-CCCCCCCCCCCc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKH-YRYTCPVCSKSL 62 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~-CGH~fh~~Cl~~~~~~-~~~~CPiCr~~~ 62 (163)
..+..||||++.| .+|++++ |||+||..||.+|+.. +...||+||+.+
T Consensus 11 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM----TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEEC----SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhh----cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3468999999874 5678899 9999999999999864 347899999997
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=80.66 Aligned_cols=44 Identities=27% Similarity=0.886 Sum_probs=37.1
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc--CCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH--YRYTCPVC 58 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~--~~~~CPiC 58 (163)
..+..|+||++.+ .++++++|||+||..||.+|+.. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC----SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchh----CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467999999874 56788999999999999999974 45689998
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=1.1e-11 Score=82.86 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=40.7
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcC-----CCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-----RYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~-----~~~CPiCr~~~~ 63 (163)
.+..|+||++.+ .++++++|||+||..|+..|+... ...||+||+.+.
T Consensus 18 ~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELL----KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCC----SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhh----CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 467999999874 556789999999999999998762 678999999874
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.21 E-value=1.8e-12 Score=86.01 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=40.8
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcC------CCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY------RYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~------~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ .+++.++|||+||..|+.+|+... ..+||+||+.+.
T Consensus 10 ~~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELL----TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEEC----SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCccc----CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3467899999874 456778999999999999998752 578999999874
No 32
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=4.3e-12 Score=94.99 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=41.6
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..|+||++. ..+|++++|||+||..||.+|+......||+||..+..
T Consensus 78 ~~~C~IC~~~----~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL----VYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB----CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh----hcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 5689999987 35678899999999999999998666789999999853
No 33
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=1.3e-11 Score=87.63 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=39.8
Q ss_pred CccccccccccccCc--------------CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDT--------------MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s--------------~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
.+..|+||++.|.+. ...++.++|||.||..||.+|+.. +.+||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 467899999886432 113567899999999999999984 68999999985
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.8e-13 Score=85.62 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=40.3
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
..+..|+||++.+. + +.++|||.||..|+.+|+. ...+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~----~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA----D-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC----S-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCcc----C-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 44679999999742 2 7899999999999999988 56899999988743
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.1e-12 Score=77.80 Aligned_cols=44 Identities=27% Similarity=0.923 Sum_probs=36.3
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc--CCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH--YRYTCPVC 58 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~--~~~~CPiC 58 (163)
..+..|+||++.+ .++++++|||+||..||.+|+.. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBC----SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCccc----CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467999999874 44577999999999999999654 56789998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=9.2e-12 Score=89.53 Aligned_cols=52 Identities=31% Similarity=0.665 Sum_probs=42.4
Q ss_pred CCccccccccccccCc---CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s---~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+.+..|+||++.+.+. .+.++.++|||+||..||.+|+.. ..+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCc
Confidence 4568999999986432 244488999999999999999984 469999999874
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.17 E-value=3.1e-12 Score=91.06 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=41.6
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+..|+||++.+ .+++.++|||+||..||.+|+..+...||+||+.+.
T Consensus 14 ~~~~C~iC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEIL----VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBC----SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCccc----CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 367899999874 567889999999999999999766789999999975
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=82.66 Aligned_cols=49 Identities=35% Similarity=0.747 Sum_probs=40.8
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc-----CCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH-----YRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~-----~~~~CPiCr~~~~ 63 (163)
..+..|+||++.+ .+++.++|||+||..|+..|+.. ....||+||+.+.
T Consensus 17 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCC----SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCccc----CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3467999999874 45677899999999999999875 2688999999874
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=85.05 Aligned_cols=46 Identities=26% Similarity=0.780 Sum_probs=39.3
Q ss_pred ccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+..|+||++.+ .+++.+ +|||+||..|+.+|+. ...+||+||+.+.
T Consensus 22 ~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCcccCChhh----CCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCC
Confidence 57899999874 456777 9999999999999998 4579999999885
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.15 E-value=2.4e-11 Score=85.60 Aligned_cols=48 Identities=23% Similarity=0.579 Sum_probs=40.6
Q ss_pred CCccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..||||++.+ .+++.+ +|||+||..||..|+.. ...||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYF----IDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSC
T ss_pred CCcCCCccCChHH----hCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccc
Confidence 3468999999874 456776 99999999999999984 489999999985
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.14 E-value=2e-11 Score=87.47 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=41.9
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
.+..||||++.+ .+++.++|||+||..||.+|+.....+||+||+.+..
T Consensus 17 ~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMAL----REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhh----cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 467999999874 5668899999999999999998665699999999854
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=2.1e-11 Score=86.83 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=41.4
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..||||++.+ .+|+.++|||+||..||.+|+.....+||+||+.+..
T Consensus 23 ~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHIL----ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHh----cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 56899999873 5678899999999999999998656789999999753
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.11 E-value=3.3e-11 Score=90.88 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=39.9
Q ss_pred ccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+..||||++.+ .+++.+ +|||+||..||..|+..+...||+||..+.
T Consensus 54 ~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDML----KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHh----hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 45899999874 345666 999999999999999865788999999984
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.6e-11 Score=85.38 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=39.3
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcC--CCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY--RYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~--~~~CPiCr~~~~ 63 (163)
...|+||++.+ .+++.++|||+||..|+.+|+... ..+||+||..+.
T Consensus 21 ~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCC----SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhh----cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 56899999874 456778999999999999999753 358999999874
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.08 E-value=2.2e-11 Score=78.64 Aligned_cols=53 Identities=25% Similarity=0.513 Sum_probs=42.0
Q ss_pred eecCCCccccccccccccCcCCccEEe--cCCCh-hhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 7 CVERAMHHNCPICFEFIFDTMKDITVL--RCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 7 c~e~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
.++...+..|+||++. .++++.+ ||||. ||..|+..|.. .+.+||+||+.+..
T Consensus 2 ~l~~~~~~~C~IC~~~----~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 2 SLPLNAIEPCVICQGR----PKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM 57 (64)
T ss_dssp ---CGGGSCCTTTSSS----CSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred CCCCCCcCCCCcCCCC----CCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence 3456678899999986 4566766 99999 89999999987 45789999999854
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.04 E-value=1.1e-10 Score=79.35 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=41.8
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+..||||++. .++|++++|||+|+..||.+|+.. ..+||+|+..+.
T Consensus 13 ~~~~CpI~~~~----m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTL----MTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred hheECcccCch----hcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC
Confidence 47899999987 578899999999999999999984 689999999874
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=2.2e-11 Score=76.41 Aligned_cols=47 Identities=28% Similarity=0.508 Sum_probs=38.1
Q ss_pred cCCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
|...+..|+||++.+ .++++|+|||+||..|+..| ...||+||+.+.
T Consensus 2 ee~~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 2 EEFQFLRCQQCQAEA----KCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CSCCCSSCSSSCSSC----BCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred CcccCCCceEeCCcc----CCeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 345678899999874 45678999999999999873 468999999873
No 48
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=77.94 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=41.6
Q ss_pred cCCCccccccccccccCcCCccEEecCC-----ChhhHHHHHHHHhcC-CCCCCCCCCCcc
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCG-----HTIHLECLKEMEKHY-RYTCPVCSKSLW 63 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CG-----H~fh~~Cl~~~~~~~-~~~CPiCr~~~~ 63 (163)
..+.+..|+||++.+.+ ..+.++||+ |.||..||.+|+... ..+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~--~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDD--ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCS--SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccC--CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34557799999987532 334678996 999999999999864 368999999873
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=2.8e-10 Score=91.10 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=44.1
Q ss_pred cCCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+......||||++. .++|++++|||+||..||.+|+..+..+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~----~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFEL----MREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSB----CSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCH----hcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 44567899999987 5788999999999999999999865566999999985
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.2e-10 Score=83.53 Aligned_cols=53 Identities=30% Similarity=0.646 Sum_probs=42.3
Q ss_pred CCCccccccccccccCc---CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 10 RAMHHNCPICFEFIFDT---MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s---~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+.....|+||++.+.+. .+.++.++|||.||..|+.+|+.. ..+||+||+++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCC
Confidence 34567899999876432 234578899999999999999985 479999999874
No 51
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=4.3e-11 Score=86.37 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=1.0
Q ss_pred CccccccccccccCc--------------CCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDT--------------MKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s--------------~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
.+..|+||++.|.+. ...++.++|||.||..||.+|+.. +.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 457899999986431 112344699999999999999984 57899999885
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=4.7e-11 Score=88.53 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=41.0
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
..+..||||++.| .+|+.++|||+||..||.+|+..+..+||+||+.+
T Consensus 29 ~~~~~C~IC~~~~----~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVL----RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhh----cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567999999874 56688999999999999999986666899999975
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=1.7e-10 Score=80.83 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=41.9
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+..||||++. +++|++++|||+|+..||.+|+. ...+||+|+..+.
T Consensus 28 ~~~~CpI~~~~----m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTL----MTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSB----CSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCc----ccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 46899999987 57889999999999999999998 4689999999874
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=7.2e-11 Score=75.92 Aligned_cols=49 Identities=24% Similarity=0.646 Sum_probs=40.3
Q ss_pred CCccccccccccccCcCCccEEe--cCCCh-hhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL--RCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L--~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
..+..|+||++. .++++++ ||||. ||..|+.+|... +.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~----~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKR----PRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSS----BSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCc----CCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 456799999986 4555666 99998 999999999874 4789999999854
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.97 E-value=1.3e-10 Score=76.76 Aligned_cols=43 Identities=26% Similarity=0.628 Sum_probs=37.2
Q ss_pred ccccccccccccCcCCccEEecCCCh-hhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..|+||++. ..+++.++|||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDR----NIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSS----BCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCC----CCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 5689999987 466788999999 999999988 579999998754
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.96 E-value=3.7e-10 Score=78.83 Aligned_cols=47 Identities=21% Similarity=0.097 Sum_probs=41.8
Q ss_pred CccccccccccccCcCCccEEecCC-ChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCG-HTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CG-H~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.+..||||++. +++|++++|| |+|++.||.+|+.. ..+||+||..+.
T Consensus 21 ~~~~CpI~~~~----m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTL----MCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSB----CSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred HhcCCcCcccc----ccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 46899999987 5788999999 99999999999984 579999999874
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=3.3e-10 Score=85.60 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=42.4
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
..+..||||++.| .+|+.++|||+||..||.+|+..+..+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~----~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMAL----REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhh----cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3468999999874 5668899999999999999998655699999998854
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=8.2e-11 Score=84.07 Aligned_cols=44 Identities=25% Similarity=0.715 Sum_probs=38.1
Q ss_pred ccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+..||||++.+ .+|+++ +|||+||..||..|+. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~----~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNIL----REPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCC----SSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHh----hCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 57899999874 556777 9999999999999986 67999999873
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=8e-10 Score=76.26 Aligned_cols=46 Identities=33% Similarity=0.587 Sum_probs=39.0
Q ss_pred CccccccccccccCcCCccEEec-CCChhhHHHHHHHHhcC-----CCCCCC--CCCC
Q 031240 12 MHHNCPICFEFIFDTMKDITVLR-CGHTIHLECLKEMEKHY-----RYTCPV--CSKS 61 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~-CGH~fh~~Cl~~~~~~~-----~~~CPi--Cr~~ 61 (163)
.+..||||++. +++|++++ |||+|+..||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~----~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE----MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB----CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch----hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46889999987 46788995 99999999999999753 468999 9866
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.88 E-value=1.1e-09 Score=93.34 Aligned_cols=48 Identities=29% Similarity=0.635 Sum_probs=41.2
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
...|+||++. ...++.++|||.||..|+..|+.....+||+||..+..
T Consensus 332 ~~~C~ICle~----~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSS----BCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcC----CCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999987 46678999999999999999998556789999998743
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.82 E-value=4.1e-09 Score=81.15 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..||||++. +++|++++|||+|+..||..|+..++.+||+|+.++.
T Consensus 104 p~~f~CPI~~el----m~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFEL----MREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSB----CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCcccc----CCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 357899999987 4778999999999999999999764457999999874
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=4.2e-10 Score=74.42 Aligned_cols=43 Identities=26% Similarity=0.628 Sum_probs=35.6
Q ss_pred ccccccccccccCcCCccEEecCCCh-hhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..|+||++. ..+++.++|||. ||..|+... ..||+||+.+..
T Consensus 25 ~~~C~IC~~~----~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR----NIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS----CCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC----CCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 4679999986 466788999999 999999643 579999998754
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.6e-09 Score=70.69 Aligned_cols=46 Identities=24% Similarity=0.555 Sum_probs=38.2
Q ss_pred CCccccccccccccCcCCccEEecCCCh-hhHHHHHHHHhcCCCCCCCCCCCccch
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWDM 65 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~~ 65 (163)
..+..|+||++. ...++.+||||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 456799999986 577889999999 99999984 25799999998553
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=8.4e-09 Score=70.77 Aligned_cols=50 Identities=22% Similarity=0.447 Sum_probs=36.7
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc----C---CCCCCC--CCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH----Y---RYTCPV--CSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~----~---~~~CPi--Cr~~ 61 (163)
+....|+||++.+. ......+.+|||.||..|+.+++.. + ..+||. |+..
T Consensus 3 ~~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45678999999742 2121222379999999999998864 1 358999 9998
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.72 E-value=2.2e-09 Score=71.97 Aligned_cols=43 Identities=30% Similarity=0.658 Sum_probs=36.8
Q ss_pred ccccccccccccCcCCccEEecCCCh-hhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..|+||++. ..+++.+||||. ||..|+..|. .||+||..+..
T Consensus 18 ~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEE----EINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSS----BCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCEeEEeCcc----cCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 4689999986 567789999999 9999998763 79999999855
No 66
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=1.3e-08 Score=67.73 Aligned_cols=49 Identities=22% Similarity=0.589 Sum_probs=38.4
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcC-CCCCCCCCCCc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSL 62 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~-~~~CPiCr~~~ 62 (163)
....+|+||.+.+.. ...-..|+|.||..||.+|++.. ..+||+||...
T Consensus 13 ~~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 345789999998643 22334999999999999999753 37899999875
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.7e-08 Score=80.71 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=40.3
Q ss_pred CCccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhc-CCCCCCC--CCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKH-YRYTCPV--CSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~-~~~~CPi--Cr~~~~ 63 (163)
..+..||||++.| ++|++. .|||+|+..||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f----~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY----EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC----SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc----cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3567999999974 666764 99999999999999875 3468999 999863
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.51 E-value=5.4e-08 Score=62.00 Aligned_cols=50 Identities=24% Similarity=0.445 Sum_probs=38.9
Q ss_pred cCCCccccccccccccCcCCccEEecCC--C---hhhHHHHHHHHhc-CCCCCCCCCCCc
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCG--H---TIHLECLKEMEKH-YRYTCPVCSKSL 62 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CG--H---~fh~~Cl~~~~~~-~~~~CPiCr~~~ 62 (163)
|.+....|.||++.. .++.++||. + .||..||.+|+.. ++.+||+|+..+
T Consensus 2 e~~~~~~CrIC~~~~----~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL----GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEEC----SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecCC----CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 556778999999862 223467865 4 9999999999975 467899999875
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.40 E-value=4.2e-08 Score=82.46 Aligned_cols=43 Identities=23% Similarity=0.756 Sum_probs=37.1
Q ss_pred ccccccccccccCcCCccEEecCCCh-hhHHHHHHHHhcCCCCCCCCCCCccc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHT-IHLECLKEMEKHYRYTCPVCSKSLWD 64 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~-fh~~Cl~~~~~~~~~~CPiCr~~~~~ 64 (163)
+..|+||++. ...++.+||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~----~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK----EVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS----BCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc----CCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 5689999987 467788999999 999999987 469999998754
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.31 E-value=6.6e-08 Score=81.20 Aligned_cols=54 Identities=28% Similarity=0.493 Sum_probs=40.0
Q ss_pred CCCccccccccccccCcCCccE----EecCCChhhHHHHHHHHhcCC----------CCCCCCCCCcc
Q 031240 10 RAMHHNCPICFEFIFDTMKDIT----VLRCGHTIHLECLKEMEKHYR----------YTCPVCSKSLW 63 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~----~L~CGH~fh~~Cl~~~~~~~~----------~~CPiCr~~~~ 63 (163)
.....+|+||++.+.++..-|. .++|||.||..|+.+|+.+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456799999998654333231 358999999999999997521 36999999873
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.29 E-value=2.9e-07 Score=58.69 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=38.8
Q ss_pred CccccccccccccCcCCccEEe-cCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
+...|||+++.| ++|+++ ++||+|.+.||.+|+... .+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m----~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVP----RRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCC----SSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCC
T ss_pred CeEEecCCCCCC----CCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCC
Confidence 457899999874 567888 999999999999999753 57999998873
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.07 E-value=2e-06 Score=60.01 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=38.6
Q ss_pred ccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccchh
Q 031240 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMS 66 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~~~ 66 (163)
-|++|--.+ ..-.+++||+|.||.+|+..|.+.+..+||.|+.++.+++
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 477887442 2334678999999999999998767789999999986653
No 73
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=97.14 E-value=5.7e-05 Score=53.47 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=52.4
Q ss_pred eeeCCCCCCCCcccceeeeccCCC--CCCCccccccCCCCCCCccccccccccceecccccccc
Q 031240 91 WILCNDCGANSHVQFHVIAHKCLS--CKSYNTRQTRGDTATTCSSGDELTILSHHWDYQQHASV 152 (163)
Q Consensus 91 ~i~C~dC~~~~~~~~h~~~~kC~~--C~synt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (163)
.-.|.+|+...+. |+++.|++ ||+|...++..|++++.+..+..+.+..+|.|+.+.+|
T Consensus 24 ~~~C~~C~~~~~~---W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V 84 (109)
T 3c5k_A 24 TQPCGDCGTIQEN---WVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYV 84 (109)
T ss_dssp TCCCTTTCCCSSE---EEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEB
T ss_pred CCcCccccCCCCe---eeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEE
Confidence 3469999987664 89999998 99999999999999999999999988899999999988
No 74
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=96.92 E-value=0.00015 Score=52.47 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=66.4
Q ss_pred EEecCCChhhHHHHHHHHhc----CCCCCCCCCCCccchhHHHHhHHHHHhcCCCChhhhcCcceeeCCCCCCCCcccce
Q 031240 31 TVLRCGHTIHLECLKEMEKH----YRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFH 106 (163)
Q Consensus 31 ~~L~CGH~fh~~Cl~~~~~~----~~~~CPiCr~~~~~~~~~~~~l~~~~~~~~~p~e~~~~~~~i~C~dC~~~~~~~~h 106 (163)
+...|-|.++..++..|... ....|+.|++.-. . .+. .+..|....+.
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~-----------------~----~~~----~~~~~~~~~~L--- 54 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNK-----------------V----KDK----AEEETEEKPSV--- 54 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTT-----------------S----SCS----SCTTTCCCCCE---
T ss_pred CCCCCcChhhccccccccccccCCCCCcCcccccccc-----------------c----ccc----ccccccccccc---
Confidence 35689999998888776532 1357888875410 0 000 12345444443
Q ss_pred eeeccCCC--CCCC-ccccccCCCCC---CCccccccccccceeccccccccc
Q 031240 107 VIAHKCLS--CKSY-NTRQTRGDTAT---TCSSGDELTILSHHWDYQQHASVA 153 (163)
Q Consensus 107 ~~~~kC~~--C~sy-nt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 153 (163)
|+++.|++ ||+| ...|+..|+++ +.|..++.+.+..+|.|..+.+|.
T Consensus 55 w~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~t~~vwCY~cd~~V~ 107 (126)
T 2i50_A 55 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQ 107 (126)
T ss_dssp EEETTTCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETTTCCEEETTTTEEEC
T ss_pred eeeeeCCccccCCCCcchHHHHHHhCcCCCCCcEEEECCCCeEEeCCCCcEEE
Confidence 89999998 9987 56888888887 788888888888899999999883
No 75
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=96.89 E-value=0.00018 Score=52.39 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=46.0
Q ss_pred eCCCCCCCCcccceeeeccCCC--CCCCc------cccccCCCCCCCccccccccc-----cceecccccccc
Q 031240 93 LCNDCGANSHVQFHVIAHKCLS--CKSYN------TRQTRGDTATTCSSGDELTIL-----SHHWDYQQHASV 152 (163)
Q Consensus 93 ~C~dC~~~~~~~~h~~~~kC~~--C~syn------t~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 152 (163)
.|.+|+...++ |+++.|++ ||+|. ..++..|+.++.|..+..|.+ ..+|.|+.+.+|
T Consensus 36 ~C~~C~~~~~L---wlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~~V 105 (129)
T 2g45_A 36 KCSKCDMRENL---WLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMV 105 (129)
T ss_dssp CCSSSSCCSSE---EEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEE
T ss_pred cCccccCcCce---EEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCCEe
Confidence 59999987654 89999998 99876 677778888787777776655 478999998887
No 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.88 E-value=0.00052 Score=54.64 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=36.8
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcC-CCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHY-RYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~-~~~CPiCr~~~ 62 (163)
.-..|.||.+.+.. ...-..|+|.||..|+..|+.+. ..+||.|+...
T Consensus 179 ~i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 35789999997642 22333599999999999998653 56899998864
No 77
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=96.33 E-value=0.0008 Score=46.46 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=49.9
Q ss_pred eeCCCCCCCCcccceeeecc--CCC--CCCCccccccCCCCCCCccccccccccceecccccccc
Q 031240 92 ILCNDCGANSHVQFHVIAHK--CLS--CKSYNTRQTRGDTATTCSSGDELTILSHHWDYQQHASV 152 (163)
Q Consensus 92 i~C~dC~~~~~~~~h~~~~k--C~~--C~synt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (163)
..|.+|++.... -|+++. |++ ||+|.-.++..|++++.+..++.+.+..+|.|+.+-+|
T Consensus 26 ~~C~~C~~~~~~--lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 26 GTCQDCKVQGPN--LWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TCCSSSCCCCSS--CEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CcCcCcCCCCCC--ceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 359999854332 279999 998 99988899999999999999999988899999988877
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.73 E-value=0.0038 Score=42.48 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=26.1
Q ss_pred CccccccccccccCcCCccEE--ecCCChhhHHHHHHHH
Q 031240 12 MHHNCPICFEFIFDTMKDITV--LRCGHTIHLECLKEME 48 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~--L~CGH~fh~~Cl~~~~ 48 (163)
.+..|+||.+.+ ..+++. +.|||+||..|++.+.
T Consensus 2 ee~~C~~C~~~~---~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDP---AQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSS---CCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCC---CCCceEECCcCChHHhHHHCHHHh
Confidence 457899999742 244455 8999999999999843
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.47 E-value=0.003 Score=43.36 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=34.8
Q ss_pred ccccccccccccCcCCccEEecCC-ChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCG-HTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CG-H~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+|-.|+-. .+ ..+.|. |.+|..|+..++. .+.+||+|++++.
T Consensus 28 ~~nCKsCWf~----~k--~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE----NK--GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC----CS--SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc----cC--CeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4689999832 12 466786 9999999999987 4588999999874
No 80
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=95.03 E-value=0.0044 Score=57.39 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=55.3
Q ss_pred EecCCChhhHHHHHHHHhcCCCCCCCCCCCccchhHHHHhHHHHHhcCCCChhhhcCcceeeCCCCCCCCcccceeeecc
Q 031240 32 VLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSHVQFHVIAHK 111 (163)
Q Consensus 32 ~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~~~~~~~~l~~~~~~~~~p~e~~~~~~~i~C~dC~~~~~~~~h~~~~k 111 (163)
+|...+.++..++..|-. ..||+|+.... +.+......+++ ..-.|.+|+...++ |+++.
T Consensus 173 i~~~~~~~~~~~~~~w~~---~~~~~c~h~~~--------~~~~~~~~~~~~------~~~~C~~c~~~~~l---w~CL~ 232 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWDG---EVRQVSKHAFS--------LKQLDNPARIPP------CGWKCSKCDMRENL---WLNLT 232 (854)
T ss_dssp HTC-------------------CCCBCTTTTT--------CCCCSSCCCCCS------SCCCCSSSCCCSSE---EEETT
T ss_pred HHhcCCHHHHHHHHhhcC---ccCCCCcCccc--------cccccccccCCC------CCCcCcCcCCcCce---EEEec
Confidence 456778899999999964 35999987631 000000111111 12469999987754 89999
Q ss_pred CCC--CCCCc------cccccCCCCCCCccccccccc-----cceecccccccc
Q 031240 112 CLS--CKSYN------TRQTRGDTATTCSSGDELTIL-----SHHWDYQQHASV 152 (163)
Q Consensus 112 C~~--C~syn------t~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 152 (163)
|++ ||+|. ..|+..|+.++.|..+..|.+ ..+|.|..+.+|
T Consensus 233 Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v 286 (854)
T 3ihp_A 233 DGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMV 286 (854)
T ss_dssp TCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEC
T ss_pred CCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCee
Confidence 997 88775 456677888777777766655 667999988776
No 81
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=92.90 E-value=0.0053 Score=42.81 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=43.2
Q ss_pred eeCCCCCCCCccc-ceeeeccCCC--CCCC-ccccccCCCCCCCccccccc--cccceecccccccccccc
Q 031240 92 ILCNDCGANSHVQ-FHVIAHKCLS--CKSY-NTRQTRGDTATTCSSGDELT--ILSHHWDYQQHASVAAGK 156 (163)
Q Consensus 92 i~C~dC~~~~~~~-~h~~~~kC~~--C~sy-nt~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (163)
-.|.+|+.....- --|++++|++ |+.| ..+|+..|++++.+.-+..+ -..-+|.|..+.+|..-.
T Consensus 19 ~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~p~ 89 (102)
T 2ida_A 19 LGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDLSD 89 (102)
T ss_dssp SSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEECTT
T ss_pred CcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcEEECcc
Confidence 3599998765211 1278999998 8877 66777778776666532212 223469999999885433
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.23 E-value=0.13 Score=32.69 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=32.5
Q ss_pred CCccccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
+....|.||.+. .. +++ .|...||..|+...+.. +.+.||.|+..
T Consensus 10 ~~~~~C~vC~~~----~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----Ce--EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999853 22 233 88999999999876543 46889999764
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.67 E-value=0.61 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=40.2
Q ss_pred ecCCCccccccccccccCcCCc-c--EEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 8 VERAMHHNCPICFEFIFDTMKD-I--TVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 8 ~e~s~~~~CpIC~e~l~~s~~~-~--~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
+.......|.||.+.+-..... + .---|+-..|+.|++.-...++..||.|+..+
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 3444567999999985222222 2 22378889999999988777888999999886
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.46 E-value=0.76 Score=33.56 Aligned_cols=47 Identities=17% Similarity=0.444 Sum_probs=34.3
Q ss_pred cCCCccccccccccccCcCCccEEe--cCCChhhHHHHHHHH----------hcCCCCCCCCCCC
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEME----------KHYRYTCPVCSKS 61 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~----------~~~~~~CPiCr~~ 61 (163)
+...+..|.||.+. .. .+. .|--+||..|+..-+ ..+.+.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~G----G~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC----SS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC----Cc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 35667899999963 22 222 888999999999644 2357899999854
No 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.94 E-value=1.6 Score=30.13 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=29.4
Q ss_pred Ccccccccccccc---CcCCccEE--ecCCChhhHHHHHH------HHhcCCCCCCCCC
Q 031240 12 MHHNCPICFEFIF---DTMKDITV--LRCGHTIHLECLKE------MEKHYRYTCPVCS 59 (163)
Q Consensus 12 ~~~~CpIC~e~l~---~s~~~~~~--L~CGH~fh~~Cl~~------~~~~~~~~CPiCr 59 (163)
....|.+|+..=. .+.....+ -.|+..||..|+.. .+....+.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3567999986310 01111222 28999999999952 2333568888886
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.60 E-value=0.3 Score=33.67 Aligned_cols=47 Identities=26% Similarity=0.578 Sum_probs=30.7
Q ss_pred CCccccccccccccCcCCc-cEEecCCChhhHHHHHHHHh---cCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKD-ITVLRCGHTIHLECLKEMEK---HYRYTCPVCS 59 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~-~~~L~CGH~fh~~Cl~~~~~---~~~~~CPiCr 59 (163)
..+..|.||.+. ....+ +.--.|+..||..|+..... ...+.||.|+
T Consensus 5 ~~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 457789999864 11111 12238999999999987543 2456777775
No 87
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=85.98 E-value=0.26 Score=34.63 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=26.9
Q ss_pred cCcceeeCCCCCCCCcccceeeec-cCCCCCCCcccccc
Q 031240 87 NKMVWILCNDCGANSHVQFHVIAH-KCLSCKSYNTRQTR 124 (163)
Q Consensus 87 ~~~~~i~C~dC~~~~~~~~h~~~~-kC~~C~synt~~~~ 124 (163)
.......|.+||......- ... +|+.|||.+.+.+.
T Consensus 69 ~~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp EECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEE
T ss_pred eccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEec
Confidence 3456889999998765432 345 89999999887654
No 88
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=85.79 E-value=0.2 Score=36.32 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=27.4
Q ss_pred CcceeeCCCCCCCCcc-------------cceee------eccCCCCCCCcccccc
Q 031240 88 KMVWILCNDCGANSHV-------------QFHVI------AHKCLSCKSYNTRQTR 124 (163)
Q Consensus 88 ~~~~i~C~dC~~~~~~-------------~~h~~------~~kC~~C~synt~~~~ 124 (163)
......|++||..... .+|++ ..+|+.|||.+...+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVK 122 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEec
Confidence 3568899999986532 35555 6899999999887543
No 89
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=84.50 E-value=0.49 Score=31.53 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=27.9
Q ss_pred CCCccccccccccccCcCCccEEecC----CChhhHHHHHHHHhc
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRC----GHTIHLECLKEMEKH 50 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~C----GH~fh~~Cl~~~~~~ 50 (163)
++....|.+|.|.|.+. ....| +|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdt----HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT----HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSST----TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccC----ceeeCCCccCCeeeccccHHHHHh
Confidence 35567899999987543 23444 699999999998865
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.43 E-value=0.41 Score=28.33 Aligned_cols=44 Identities=27% Similarity=0.701 Sum_probs=28.6
Q ss_pred ccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
.|.||... + ....+++ .|.-.||..|+..-+.. +.+.||.|+..
T Consensus 2 ~C~vC~~~--~-~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--G-EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--S-CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--C-CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888854 1 1112233 88899999999753322 46789999754
No 91
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.55 E-value=0.41 Score=29.66 Aligned_cols=46 Identities=26% Similarity=0.661 Sum_probs=32.4
Q ss_pred cCCCccccccccccccCcCCccEEe--cCCChhhHHHHHHHHh---cCCCCCCCCCC
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK---HYRYTCPVCSK 60 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~---~~~~~CPiCr~ 60 (163)
+...+..|.||.+. .. +++ .|.-.||..|+..-+. .+.+.||.|.+
T Consensus 7 ~~~~~~~C~vC~~~----g~--ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GE--IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC----SS--EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC----Cc--EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 44557789999863 22 333 7888999999987432 24688999965
No 92
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=80.91 E-value=0.87 Score=28.40 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=22.5
Q ss_pred cceeeCCCCCCCCcccceeeeccCCCCCCCccccc
Q 031240 89 MVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQT 123 (163)
Q Consensus 89 ~~~i~C~dC~~~~~~~~h~~~~kC~~C~synt~~~ 123 (163)
...+.|..||+.. ..|. .|.+||-|+.+++
T Consensus 28 p~l~~c~~cG~~~--~pH~---vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 28 PNLTECPQCHGKK--LSHH---ICPNCGYYDGRQV 57 (60)
T ss_dssp CCCEECTTTCCEE--CTTB---CCTTTCBSSSBCS
T ss_pred CCceECCCCCCEe--CCce---EcCCCCcCCCEEe
Confidence 3567899999862 3343 5999999999875
No 93
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.89 E-value=1.5 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHH
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEM 47 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~ 47 (163)
..+..|.||-.. ++....----|+-.||..|+++.
T Consensus 13 ~~D~~C~VC~~~--t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW--TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC--CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc--cccceeccccccccccHhhcccc
Confidence 457899999842 22211111257899999999997
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=76.18 E-value=2.1 Score=35.97 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=33.8
Q ss_pred CccccccccccccCcCCccEEecCCCh--hhHHHHHHHHh-cCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHT--IHLECLKEMEK-HYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~--fh~~Cl~~~~~-~~~~~CPiCr~~~ 62 (163)
....|||=+..| ..+.....|.|. |=..-+.++.. ...+.||+|.+.+
T Consensus 248 vSL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 357899888764 456677799998 55444444432 2578999999987
No 95
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.62 E-value=2.3 Score=35.62 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=34.1
Q ss_pred ccccccccccccCcCCccEEecCCCh--hhHHHHHHHHh-cCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHT--IHLECLKEMEK-HYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~--fh~~Cl~~~~~-~~~~~CPiCr~~~~ 63 (163)
...|||=+..| ..+.+...|.|. |=..=+-++.. ...+.||+|++.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 56799888664 456677799998 55555555443 25789999999873
No 96
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.29 E-value=0.31 Score=30.22 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
...+..|.||.+. ..-+.--.|.-.||..|+..-+.. +.+.||.|...
T Consensus 6 d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456789999853 221111178889999999853332 46789999765
No 97
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=74.33 E-value=2.3 Score=30.52 Aligned_cols=47 Identities=17% Similarity=0.444 Sum_probs=33.2
Q ss_pred cCCCccccccccccccCcCCccEEe--cCCChhhHHHHHHHH----------hcCCCCCCCCCCC
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEME----------KHYRYTCPVCSKS 61 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~----------~~~~~~CPiCr~~ 61 (163)
+...+..|.||.+. .. .+. .|-..||..|+..-+ ..+.+.|++|+-.
T Consensus 53 ~Dg~~~~C~vC~dG----G~--LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG----GN--LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCC----SE--EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCC----Ce--eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 35567789999963 22 222 788999999999742 2356899999654
No 98
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.10 E-value=2.7 Score=29.03 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=27.5
Q ss_pred cccccccccccC----cCCccEE--ecCCChhhHHHHHHH------HhcCCCCCCCCC
Q 031240 14 HNCPICFEFIFD----TMKDITV--LRCGHTIHLECLKEM------EKHYRYTCPVCS 59 (163)
Q Consensus 14 ~~CpIC~e~l~~----s~~~~~~--L~CGH~fh~~Cl~~~------~~~~~~~CPiCr 59 (163)
..|.||+..-.. +.....+ -.|+..||..|+... .....+.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468999864210 0111222 289999999998742 233467777764
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=73.26 E-value=0.64 Score=35.54 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=32.6
Q ss_pred CCCccccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
...+..|.||... .. .++ .|.-.||..|+..-+.. +.+.||.|+..
T Consensus 4 d~~~~~C~~C~~~----g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC----EE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC----Cc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3456789999853 11 233 78899999998765432 46889999875
No 100
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=72.88 E-value=1.1 Score=27.91 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=21.9
Q ss_pred ceeeCCCCCCCCcccceeeeccCCCCCCCccccc
Q 031240 90 VWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQT 123 (163)
Q Consensus 90 ~~i~C~dC~~~~~~~~h~~~~kC~~C~synt~~~ 123 (163)
..+.|..||+.. ..|. .|.+||-|+.+++
T Consensus 29 ~l~~c~~cGe~~--~~H~---vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAMK--PPHT---VCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCEE--CTTS---CCTTTCEETTEEC
T ss_pred ceeECCCCCCee--cceE---EcCCCCcCCCEEe
Confidence 467899999743 3343 4999999999875
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=70.05 E-value=4.1 Score=38.30 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=40.9
Q ss_pred CCccccccccccccCcCCccEEecCC-ChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCG-HTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CG-H~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
..+..|||-++. .++|++++-| +++=+..|++|+.+ +.+||+=|.++.
T Consensus 889 P~~F~cPIs~~l----M~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTI----MKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSB----CSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred cHHhCCcchhhH----HhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC
Confidence 456789999987 5888999998 69999999999985 578999888774
No 102
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.57 E-value=1.3 Score=28.37 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=32.3
Q ss_pred CCCccccccccccccCcCCccEEe--cCCChhhHHHHHHH-HhcCCCCCCCCCC
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEM-EKHYRYTCPVCSK 60 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~-~~~~~~~CPiCr~ 60 (163)
...+..|.||.+.-. ......++ .|.-.||..|+..- +..+.+.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s-~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGES-QNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCC-CSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCC-CCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345788999986410 11223333 88899999999753 2235678988853
No 103
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=68.07 E-value=1.5 Score=23.73 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=19.4
Q ss_pred cccceecccccccccccccccccc
Q 031240 139 ILSHHWDYQQHASVAAGKQLYCSE 162 (163)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~ 162 (163)
..|++=|.-.|.-|..|+++|||.
T Consensus 12 pnpregdwcchkcvpegkrfycrd 35 (36)
T 4b2u_A 12 PNPREGDWCCHKCVPEGKRFYCRD 35 (36)
T ss_dssp CCGGGCCSSSSEEEEETTEEEEEC
T ss_pred cCCCccCeeeecccccCceeeecC
Confidence 456666667799999999999985
No 104
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=66.28 E-value=0.53 Score=29.31 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=32.5
Q ss_pred CCccccccccccccCcCCccEEe--cCCChhhHHHHHHHH------hcCCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEME------KHYRYTCPVCSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~------~~~~~~CPiCr~~ 61 (163)
..+..|.||...- +.....+++ .|.-.||..|+..-+ ..+.+.||.|...
T Consensus 4 ~~~~~C~vC~~~~-~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEY-SEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCC-CBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCC-CCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567899999641 111223333 888999999988522 2356789988643
No 105
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=66.15 E-value=2.6 Score=23.23 Aligned_cols=16 Identities=38% Similarity=0.794 Sum_probs=11.9
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.||+|++.+.....
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4679999998866443
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.17 E-value=1.7 Score=28.88 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCccccccccccccCcCCccEEe---cCCChhhHHHHHHH-HhcCCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEM-EKHYRYTCPVCSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L---~CGH~fh~~Cl~~~-~~~~~~~CPiCr~~ 61 (163)
..+..|.||.+. ++...-.+| .|.-.||..|+..- +..+.+.||.|...
T Consensus 23 ~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 346789999964 111222333 77889999999753 22256789999543
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.01 E-value=1.7 Score=28.25 Aligned_cols=45 Identities=22% Similarity=0.586 Sum_probs=29.5
Q ss_pred ccccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---C-CCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---Y-RYTCPVCSK 60 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~-~~~CPiCr~ 60 (163)
+-.|.||... + ....+++ .|...||..|+..-+.. + .+.||.|..
T Consensus 26 ~c~C~vC~~~--~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGK--H-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCC--C-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCc--C-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478889853 1 1222334 88899999999854332 3 578999964
No 108
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=63.79 E-value=0.91 Score=38.38 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=41.6
Q ss_pred eeCCCCCCCCcccceeeeccCCCCCCCccccccCCCCCCCccccccccccceecccccccc
Q 031240 92 ILCNDCGANSHVQFHVIAHKCLSCKSYNTRQTRGDTATTCSSGDELTILSHHWDYQQHASV 152 (163)
Q Consensus 92 i~C~dC~~~~~~~~h~~~~kC~~C~synt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (163)
..|.+|....... -|+++.|++.|-....|+..|+.++.|..+..+....+|-|+.+-+|
T Consensus 49 ~~C~~c~~~~~~~-~~~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v 108 (476)
T 3mhs_A 49 MKCGTCHEINSGA-TFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYI 108 (476)
T ss_dssp SBCTTTCCBCSSS-EEEESSSSCEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEE
T ss_pred CCcccccCCCCCC-ceEeCCCCCCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCc
Confidence 3499998764222 27999999844333667777877777777777777777888776655
No 109
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=63.55 E-value=2.9 Score=26.49 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=30.3
Q ss_pred ccccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
...|+||...- ....+++ .|.--||..|+..-... ..+.||.|+..
T Consensus 18 ~~~C~~C~~~~---~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICPGCNKPD---DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EECBTTTTBCC---SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CcCCCCCCCCC---CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 34699998651 1222333 78889999998754322 46889999653
No 110
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.26 E-value=1.4 Score=29.54 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=31.5
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
..+..|.||.+. ..-..--.|.-.||..|+..-+.. +.+.||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999953 221111177889999999765433 46789999754
No 111
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=61.97 E-value=2 Score=22.67 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=12.8
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.||+|+..+.++..+
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 46799999988776543
No 112
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=61.97 E-value=1.2 Score=33.27 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=31.6
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhc---CCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~~ 62 (163)
.+..|.||.+. ..-..-=.|.-.||..|+..-+.. +.+.||.|+..-
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999853 221111178899999998765432 468899998753
No 113
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=61.91 E-value=2.2 Score=27.59 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=33.0
Q ss_pred ceeeCCCCCCCCcccceeeeccCCCCC-CCccccccC-CCCCCCcccccccccc
Q 031240 90 VWILCNDCGANSHVQFHVIAHKCLSCK-SYNTRQTRG-DTATTCSSGDELTILS 141 (163)
Q Consensus 90 ~~i~C~dC~~~~~~~~h~~~~kC~~C~-synt~~~~~-~~~~~~~~~~~~~~~~ 141 (163)
..|.|+.|....... ....|..|. ||...+++. |.. ...+..|.|+.|
T Consensus 29 ~~v~C~~C~~~~~~~---A~ksCl~C~~s~C~~hl~~~H~~-~~~~~~H~L~~p 78 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKATHPN-KKPFTGHRLIEP 78 (78)
T ss_dssp CCCBCSSCCSSSCCB---CCEEETTTTEEECHHHHHHHSCC-CSSSCSCCCSCC
T ss_pred CCccCCcCCCCCCCC---CeeEccCccchhhhhhhHhhcCC-CCCCCCCcccCc
Confidence 468999997533111 335799997 999999996 887 445556766543
No 114
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.58 E-value=3.1 Score=31.44 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=32.5
Q ss_pred cccccccccccCcCCccEEe---cCCChhhHHHHHHH------Hh----cCCCCCCCCCCCccc
Q 031240 14 HNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEM------EK----HYRYTCPVCSKSLWD 64 (163)
Q Consensus 14 ~~CpIC~e~l~~s~~~~~~L---~CGH~fh~~Cl~~~------~~----~~~~~CPiCr~~~~~ 64 (163)
..||||...+.++.....++ .|..-||..|..-- +. ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 46999987643332122244 67789999996431 11 126999999988644
No 115
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=61.46 E-value=1.3 Score=28.83 Aligned_cols=43 Identities=23% Similarity=0.589 Sum_probs=27.7
Q ss_pred ccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---CC-CCCCCCCC
Q 031240 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YR-YTCPVCSK 60 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~~-~~CPiCr~ 60 (163)
.|.||... ......++ .|.-.||..|+..-+.. +. +.||.|+.
T Consensus 28 ~C~vC~~~---~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGR---QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCC---SCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCC---CCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 57777753 11223333 78899999999865433 34 78999974
No 116
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=61.45 E-value=3.4 Score=25.86 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=19.0
Q ss_pred ccccccccce----ecccccccccccccccccc
Q 031240 134 GDELTILSHH----WDYQQHASVAAGKQLYCSE 162 (163)
Q Consensus 134 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 162 (163)
..+.|+.|.. ..|+.|+.. ++|||.+
T Consensus 5 ~~H~L~~p~~~~~~~~C~~H~e~---l~lfC~~ 34 (72)
T 2csv_A 5 SSGQLLEPIRDFEARKCPVHGKT---MELFCQT 34 (72)
T ss_dssp CCCCCCCCSSSSSCCBCTTTCCB---CCEEESS
T ss_pred cCCcccCCccccccCcCcccCCc---eEEEeCC
Confidence 3455555543 789999988 9999975
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=60.36 E-value=1.8 Score=27.44 Aligned_cols=44 Identities=23% Similarity=0.591 Sum_probs=28.1
Q ss_pred ccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---C-CCCCCCCCCC
Q 031240 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---Y-RYTCPVCSKS 61 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~-~~~CPiCr~~ 61 (163)
.|.||... + ....+++ .|...||..|+..-+.. + .+.||.|+..
T Consensus 20 ~C~~C~~~--~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGR--Q-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCC--S-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCc--C-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677743 1 1222333 78899999999854332 4 6789999753
No 118
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.19 E-value=0.67 Score=28.68 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHh----cCCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK----HYRYTCPVCSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~----~~~~~CPiCr~~ 61 (163)
.....|+||.....+...-+.--.|..=||..|+.--.. ...+.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 346679999876321111111126778899999764321 146788888653
No 119
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.35 E-value=0.38 Score=29.21 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=29.8
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc---CCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSK 60 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~---~~~~CPiCr~ 60 (163)
..+..|.||.+. ..-+.--.|.-.||..|+..-+.. +.+.||.|..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 446789999863 221111288899999999853322 4577888853
No 120
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=57.03 E-value=4 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=25.5
Q ss_pred ecCCCccccccccccccCcC-CccEEecCCChhhHHHHHH
Q 031240 8 VERAMHHNCPICFEFIFDTM-KDITVLRCGHTIHLECLKE 46 (163)
Q Consensus 8 ~e~s~~~~CpIC~e~l~~s~-~~~~~L~CGH~fh~~Cl~~ 46 (163)
++++....|.+|...+ +.. +.-.--.||..||..|...
T Consensus 16 ~pd~~~~~C~~C~~~F-s~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVF-TTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCBC-CTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCcc-ccchhcccccCCCcEEChHHhCC
Confidence 3455667899999874 333 3333348999999999554
No 121
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.35 E-value=0.72 Score=28.92 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=31.4
Q ss_pred CCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc---CCCCCCCCCCC
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSKS 61 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~---~~~~CPiCr~~ 61 (163)
...+..|.||.+. ..-+.--.|.-.||..|+..-+.. +.+.||.|...
T Consensus 5 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3457889999863 221111278889999999853322 46789999643
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.15 E-value=3.8 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.5
Q ss_pred CCCccccccccccccCcCCccEEecCCChhhHHHHHHH
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEM 47 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~ 47 (163)
++....|.+|...+.-..+.-.--.||..||..|....
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 34456799999874322333344599999999997654
No 123
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.91 E-value=1.9 Score=29.71 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=28.0
Q ss_pred ccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---CCCCCCCCCC
Q 031240 15 NCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---YRYTCPVCSK 60 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~~~~CPiCr~ 60 (163)
.|.||.+.- ......++ .|...||..|+..-+.. +.+.||.|+.
T Consensus 63 ~C~vC~~~~--~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQG--KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCC--CTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcC--CCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887531 11112222 78899999999754432 4578999975
No 124
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=55.43 E-value=0.8 Score=28.08 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=30.5
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhc---CCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKH---YRYTCPVCSK 60 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~---~~~~CPiCr~ 60 (163)
..+..|.||... ..-+.--.|.-.||..|+..-+.. +.+.||.|..
T Consensus 3 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 346789999863 221111288899999999853322 4678999954
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.93 E-value=4.2 Score=26.41 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=24.6
Q ss_pred ecCCCccccccccccccCcCCccEEecCCChhhHHHHHH
Q 031240 8 VERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKE 46 (163)
Q Consensus 8 ~e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~ 46 (163)
++++....|.+|...+.-..+.-.--.||..||..|...
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 344556689999987422223233348999999998653
No 126
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=54.64 E-value=19 Score=19.93 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=10.7
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 4 ~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYY 19 (57)
T ss_dssp -CBCTTTCCBCSCHHH
T ss_pred CccCCCCcchhCChHH
Confidence 4678888888765443
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.25 E-value=4.5 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.1
Q ss_pred ecCCCccccccccccccCcCCccEEecCCChhhHHHHH
Q 031240 8 VERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLK 45 (163)
Q Consensus 8 ~e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~ 45 (163)
++++.-..|.+|...+.-..+.-.--.||..||..|..
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45566678999998742222323334899999999843
No 128
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.04 E-value=4.4 Score=28.55 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=23.8
Q ss_pred cCCCccccccccccccCcCCccEEecCCChhhHHHHH
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLK 45 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~ 45 (163)
+++.-..|.+|...|.-..+.-.--.||..||..|..
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3444568999998742222223334899999999854
No 129
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.39 E-value=8.1 Score=24.19 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=20.4
Q ss_pred cceeeCCCCCCCCcccceeeeccCCCCCC
Q 031240 89 MVWILCNDCGANSHVQFHVIAHKCLSCKS 117 (163)
Q Consensus 89 ~~~i~C~dC~~~~~~~~h~~~~kC~~C~s 117 (163)
.+..+|.+|+....... --..+|..||.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~-~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQA-KEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCCS-SSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecCC-CCceECCCCCc
Confidence 46788999998766543 24578999984
No 130
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.87 E-value=6.6 Score=24.90 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=27.5
Q ss_pred CccccccccccccCcCCccEEe--c--CC-ChhhHHHHHHHHh-cCCCCCCCCCCC
Q 031240 12 MHHNCPICFEFIFDTMKDITVL--R--CG-HTIHLECLKEMEK-HYRYTCPVCSKS 61 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L--~--CG-H~fh~~Cl~~~~~-~~~~~CPiCr~~ 61 (163)
....| ||...- ...++. . |. .-||..|+.--.. .+.+.||.|+..
T Consensus 15 ~~~~C-~C~~~~----~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCS----CSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCC----CCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 34567 898741 122333 4 55 6899999972111 146889999765
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.61 E-value=15 Score=27.11 Aligned_cols=49 Identities=16% Similarity=0.512 Sum_probs=34.6
Q ss_pred ecCCCccccccccccccCcCCccEEe---cCCChhhHHHHHHHHhc---------CCCCCCCCCCC
Q 031240 8 VERAMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEMEKH---------YRYTCPVCSKS 61 (163)
Q Consensus 8 ~e~s~~~~CpIC~e~l~~s~~~~~~L---~CGH~fh~~Cl~~~~~~---------~~~~CPiCr~~ 61 (163)
.++..+..|.||.+. ..+..- .|-..||..||..++.. ..+.|=+|.-.
T Consensus 74 DeDG~~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCcceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 456788999999963 222221 47789999999998643 25678888654
No 132
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.83 E-value=1.3 Score=29.09 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=23.4
Q ss_pred cccccccccCcC-CccEEe-cCCChhhHHHHHHH-HhcCCCCC
Q 031240 16 CPICFEFIFDTM-KDITVL-RCGHTIHLECLKEM-EKHYRYTC 55 (163)
Q Consensus 16 CpIC~e~l~~s~-~~~~~L-~CGH~fh~~Cl~~~-~~~~~~~C 55 (163)
||=|...+.... ...+.- .||+.||..|-..| -.+...+|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC 70 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSC 70 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCCh
Confidence 777765432211 222333 49999999998888 23333445
No 133
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.37 E-value=9.1 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=24.0
Q ss_pred CcceeeCCCCCCCCcccceeeeccCCCCCCCcccc
Q 031240 88 KMVWILCNDCGANSHVQFHVIAHKCLSCKSYNTRQ 122 (163)
Q Consensus 88 ~~~~i~C~dC~~~~~~~~h~~~~kC~~C~synt~~ 122 (163)
......|.+||-.+... -..--+|+.|+|-|...
T Consensus 64 ~v~p~~C~~CG~~F~~~-~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKAE-INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp EECCCBBTTTCCBCCCC-SSCCSSCSSSCCCCBCC
T ss_pred EEECcChhhCcCeeccc-CCCCCCCcCCCCCccCC
Confidence 45678899999876211 12346899999988765
No 134
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=49.19 E-value=2.3 Score=32.13 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=30.2
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHh---cCCCCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~---~~~~~CPiCr~~ 61 (163)
+..|.+|.+. ..-..--.|.-.||..|+..-+. .+.+.||.|+..
T Consensus 2 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999853 22112227788999999975332 256889999864
No 135
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.54 E-value=0.79 Score=30.51 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=32.6
Q ss_pred CccccccccccccCcC-CccEEe--cCCChhhHHHHHHHHh-------cCCCCCCCCCCC
Q 031240 12 MHHNCPICFEFIFDTM-KDITVL--RCGHTIHLECLKEMEK-------HYRYTCPVCSKS 61 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~-~~~~~L--~CGH~fh~~Cl~~~~~-------~~~~~CPiCr~~ 61 (163)
.+..|.||... ++. ...+++ .|...||..|+..-+. .+.+.||.|...
T Consensus 15 ~~~~C~vC~~~--~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQM--TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCC--CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCC--CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 45689999964 221 123444 8899999999986432 256889999644
No 136
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=47.09 E-value=6.5 Score=32.07 Aligned_cols=26 Identities=23% Similarity=0.768 Sum_probs=20.0
Q ss_pred cceeeCCCCCCCCcccceeeeccCCCCCCC
Q 031240 89 MVWILCNDCGANSHVQFHVIAHKCLSCKSY 118 (163)
Q Consensus 89 ~~~i~C~dC~~~~~~~~h~~~~kC~~C~sy 118 (163)
.....|.-|+ ..+|+.-.+|.+||+-
T Consensus 206 ~R~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTC----CEEECCTTSCSSSCCC
T ss_pred cEEEEeCCCC----CEEeecCcCCcCCCCC
Confidence 3467899997 4677788899999964
No 137
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=46.13 E-value=14 Score=24.70 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=29.2
Q ss_pred cccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc--CCCCCCCCCCCcc
Q 031240 14 HNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH--YRYTCPVCSKSLW 63 (163)
Q Consensus 14 ~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~--~~~~CPiCr~~~~ 63 (163)
..| ||...- ....++. .|.--||..|+..-... ..+.||.|+..-.
T Consensus 29 vrC-iC~~~~---~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 29 TRC-ICGFTH---DDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNL 78 (98)
T ss_dssp CCC-TTSCCS---CSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCC
T ss_pred EEe-ECCCcc---CCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCC
Confidence 356 887541 1223443 88899999998753221 3588999986543
No 138
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=45.75 E-value=9.8 Score=23.37 Aligned_cols=27 Identities=30% Similarity=0.739 Sum_probs=21.1
Q ss_pred cCcceeeCCCCCCCCcccceeeeccCCCCC
Q 031240 87 NKMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (163)
Q Consensus 87 ~~~~~i~C~dC~~~~~~~~h~~~~kC~~C~ 116 (163)
..+..++|.-|+.+ .||+--..|..||
T Consensus 13 ~~ktH~~CrRCG~~---syH~qK~~Ca~CG 39 (57)
T 1vq8_1 13 NTTTHTKCRRCGEK---SYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCEEECTTTCSE---EEETTTTEETTTC
T ss_pred CCCccccccccCCh---hhhcccccccccc
Confidence 34678999999985 4666677888888
No 139
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=45.45 E-value=18 Score=20.06 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=9.5
Q ss_pred CCCCCCCCCccchh
Q 031240 53 YTCPVCSKSLWDMS 66 (163)
Q Consensus 53 ~~CPiCr~~~~~~~ 66 (163)
+.|++|.+.+....
T Consensus 2 ~~C~~C~~~f~~~~ 15 (57)
T 1bbo_A 2 YICEECGIRXKKPS 15 (57)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred CcCCCCcCcCCCHH
Confidence 56888888775543
No 140
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=45.10 E-value=8.8 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.495 Sum_probs=19.2
Q ss_pred CcceeeCCCCCCCCcccceeeeccCCCCCC
Q 031240 88 KMVWILCNDCGANSHVQFHVIAHKCLSCKS 117 (163)
Q Consensus 88 ~~~~i~C~dC~~~~~~~~h~~~~kC~~C~s 117 (163)
..+...|.+|+....... --...|..||.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~-~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSR-TDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCCT-TSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeCC-CCCccCCCCCc
Confidence 357788999998743321 12347999996
No 141
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=43.70 E-value=10 Score=25.13 Aligned_cols=10 Identities=40% Similarity=1.215 Sum_probs=8.5
Q ss_pred CCCCCCCCCc
Q 031240 53 YTCPVCSKSL 62 (163)
Q Consensus 53 ~~CPiCr~~~ 62 (163)
..||+|.+++
T Consensus 9 ~~~PlCG~~L 18 (95)
T 2k5c_A 9 AKCPICGSPL 18 (95)
T ss_dssp EECSSSCCEE
T ss_pred ccCCcCCCcc
Confidence 4699999987
No 142
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=43.35 E-value=1.2 Score=29.55 Aligned_cols=12 Identities=33% Similarity=1.040 Sum_probs=9.6
Q ss_pred Cccccccccccc
Q 031240 12 MHHNCPICFEFI 23 (163)
Q Consensus 12 ~~~~CpIC~e~l 23 (163)
|+..||+|...|
T Consensus 1 M~~~CP~C~~~l 12 (81)
T 2jrp_A 1 MEITCPVCHHAL 12 (81)
T ss_dssp CCCCCSSSCSCC
T ss_pred CCCCCCCCCCcc
Confidence 567899999775
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.91 E-value=5 Score=21.15 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=14.0
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHH
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLEC 43 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~C 43 (163)
|...|+.|...++... .+..=|..||..|
T Consensus 2 m~~~C~~C~k~Vy~~E---k~~~~g~~~Hk~C 30 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTE---KVNCLDKFWHKAC 30 (31)
T ss_dssp CCCBCSSSCSBCCGGG---CCCSSSSCCCGGG
T ss_pred CCCcCCccCCEEecce---eEEECCeEecccC
Confidence 3456666665543221 2223356666655
No 144
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=42.21 E-value=13 Score=25.03 Aligned_cols=26 Identities=35% Similarity=0.812 Sum_probs=21.3
Q ss_pred CcceeeCCCCCCCCcccceeeeccCCCCC
Q 031240 88 KMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (163)
Q Consensus 88 ~~~~i~C~dC~~~~~~~~h~~~~kC~~C~ 116 (163)
.+..++|.-||.. .||+--..|..||
T Consensus 13 ~KtHtlCrRCG~~---syH~qK~~Ca~CG 38 (94)
T 3iz5_l 13 NKTHTLCVRCGRR---SFHLQKSTCSSCG 38 (94)
T ss_dssp CCSEEECTTTCSE---EEEGGGTEETTTC
T ss_pred CCccceecCcCch---hhhcccccccccC
Confidence 4578999999985 5677778899998
No 145
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=41.98 E-value=6.1 Score=21.79 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=5.1
Q ss_pred eeccCCCCCC
Q 031240 108 IAHKCLSCKS 117 (163)
Q Consensus 108 ~~~kC~~C~s 117 (163)
+.++|..||+
T Consensus 20 ~~l~C~aCG~ 29 (36)
T 1k81_A 20 HLLKCMACGA 29 (36)
T ss_dssp EEEEEETTTE
T ss_pred EEEEhhcCCC
Confidence 4455555553
No 146
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.12 E-value=12 Score=24.41 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=27.5
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
....|+.|.+.+... ..++..=|..||..| ++|-.|++++
T Consensus 4 ~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L 43 (101)
T 2cup_A 4 GSSGCVECRKPIGAD--SKEVHYKNRFWHDTC---------FRCAKCLHPL 43 (101)
T ss_dssp CCCBCSSSCCBCCSS--SCEEEETTEEEETTT---------CCCSSSCCCT
T ss_pred CCCcCcccCCcccCC--ceEEEECccChhhcC---------CcccccCCCC
Confidence 356799999876421 223344578888877 5688998886
No 147
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=39.85 E-value=14 Score=24.96 Aligned_cols=29 Identities=28% Similarity=0.817 Sum_probs=23.7
Q ss_pred CcceeeCCCCCCCCcccceeeeccCCCCC-------CCc
Q 031240 88 KMVWILCNDCGANSHVQFHVIAHKCLSCK-------SYN 119 (163)
Q Consensus 88 ~~~~i~C~dC~~~~~~~~h~~~~kC~~C~-------syn 119 (163)
.+..++|.-||.. .||+--..|..|| +||
T Consensus 13 ~KtHtlCrRCG~~---syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 13 QKTHTLCRRCGKA---TYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCEEECTTTCSE---EEETTTTEESSSCGGGSSCCCCT
T ss_pred CCccceecCcCch---hhhhccccccccCCcHHHhcCcc
Confidence 4578999999985 5677778899999 788
No 148
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.27 E-value=31 Score=20.36 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=11.3
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 17 ~~~C~~C~k~f~~~~~ 32 (74)
T 2lce_A 17 PYKCDRCQASFRYKGN 32 (74)
T ss_dssp SBCCTTSSCCBSCHHH
T ss_pred CeECCCCCceeCCHHH
Confidence 4678999888765443
No 149
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.72 E-value=1.5 Score=30.00 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=24.4
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
|+..||+|..+|.- .=|+.+|..|-..+.. ...||-|.+++
T Consensus 31 M~~~CP~Cq~eL~~--------~g~~~hC~~C~~~f~~--~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQ--------DNGHARCRSCGEFIEM--KALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEE--------ETTEEEETTTCCEEEE--EEECTTTCSBC
T ss_pred ccccCccCCCccee--------cCCEEECccccchhhc--cccCcchhhHH
Confidence 67899999976521 1133346666444332 24588887765
No 150
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=38.58 E-value=20 Score=16.18 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=9.9
Q ss_pred CCCCCCCCCccch
Q 031240 53 YTCPVCSKSLWDM 65 (163)
Q Consensus 53 ~~CPiCr~~~~~~ 65 (163)
+.|+.|.+.+...
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 5799999887553
No 151
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.03 E-value=2.2 Score=28.57 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=29.7
Q ss_pred ccccccccccccCcCCccEEe--cCCChhhHHHHHHHHh---cCCCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK---HYRYTCPVCSK 60 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~---~~~~~CPiCr~ 60 (163)
+..|.||... . ....+++ .|.-.||..|+..-+. .+.+.||.|..
T Consensus 16 ~~~C~vC~~~--~-~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRG--D-EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCS--G-GGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCc--C-CCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4579999864 1 1222333 8889999999974332 24678999953
No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.49 E-value=12 Score=23.65 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=25.6
Q ss_pred CCCccccccccccccCcCCccEEecC-CChhhHHHHHHHH
Q 031240 10 RAMHHNCPICFEFIFDTMKDITVLRC-GHTIHLECLKEME 48 (163)
Q Consensus 10 ~s~~~~CpIC~e~l~~s~~~~~~L~C-GH~fh~~Cl~~~~ 48 (163)
+....=|.||.++ ....-+.| |-.||..|+.+.-
T Consensus 5 ~ee~pWC~ICneD-----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-----CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC-----CeEEecCCCCceehHHHHHHHc
Confidence 4456779999975 33466788 7899999988864
No 153
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.34 E-value=3.7 Score=25.14 Aligned_cols=41 Identities=22% Similarity=0.622 Sum_probs=25.3
Q ss_pred ccccccccccccCcCCccEEe--c--CC-ChhhHHHHHHHHhc---CCCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVL--R--CG-HTIHLECLKEMEKH---YRYTCPVCSK 60 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L--~--CG-H~fh~~Cl~~~~~~---~~~~CPiCr~ 60 (163)
..-| ||...- ...++. . |. .-||..|+. +.. +.+.||.|++
T Consensus 10 ~~~C-~C~~~~----~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS----YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC----CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4556 898741 122332 4 55 579999998 322 4678998854
No 154
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=37.32 E-value=7.8 Score=27.72 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=33.3
Q ss_pred Cccccccccccc-cCcCCccEEecCCChhhHHHHHHHHh---cCCCCCCCCCCC
Q 031240 12 MHHNCPICFEFI-FDTMKDITVLRCGHTIHLECLKEMEK---HYRYTCPVCSKS 61 (163)
Q Consensus 12 ~~~~CpIC~e~l-~~s~~~~~~L~CGH~fh~~Cl~~~~~---~~~~~CPiCr~~ 61 (163)
.+..|.+|...+ |-......-..|.|.+|..|-..... ...+.|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 467899999987 44444445569999999999553211 124568888664
No 155
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=36.29 E-value=25 Score=20.93 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=10.0
Q ss_pred CCCCCCCCCccchhH
Q 031240 53 YTCPVCSKSLWDMSK 67 (163)
Q Consensus 53 ~~CPiCr~~~~~~~~ 67 (163)
+.|++|.+.+.....
T Consensus 5 y~C~~C~k~F~~~~~ 19 (60)
T 4gzn_C 5 FFCNFCGKTYRDASG 19 (60)
T ss_dssp EECTTTCCEESSHHH
T ss_pred ccCCCCCCEeCCHHH
Confidence 568888887755443
No 156
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.02 E-value=18 Score=23.05 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=28.8
Q ss_pred CccccccccccccCcCCccEEe--cCCChhhHHHHHHHHh----cCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEK----HYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~----~~~~~CPiCr~~~ 62 (163)
....| ||.... +. ...++- .|.-=||..|+.--.. ...+.||.|+...
T Consensus 11 ~~~~C-~C~~~~-d~-~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPY-NV-NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSC-CS-SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCcc-CC-CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34456 888652 11 122222 6788899999853211 2468899998763
No 157
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.96 E-value=12 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=21.9
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHH
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLK 45 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~ 45 (163)
+..|.+|...+.-..+.-.--.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999998742222333334899999999964
No 158
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.94 E-value=33 Score=15.56 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=11.2
Q ss_pred CCCCCCCCCccchhH
Q 031240 53 YTCPVCSKSLWDMSK 67 (163)
Q Consensus 53 ~~CPiCr~~~~~~~~ 67 (163)
+.|+.|.+.+.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 3 YQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCSSSSCCCSCSHH
T ss_pred ccCCCCCCccCCHHH
Confidence 679999998865443
No 159
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.77 E-value=9.6 Score=25.49 Aligned_cols=43 Identities=23% Similarity=0.745 Sum_probs=26.4
Q ss_pred ccccccccccccCcCCccEEe---c--CC-ChhhHHHHHHHHh-cCCCCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVL---R--CG-HTIHLECLKEMEK-HYRYTCPVCSKS 61 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L---~--CG-H~fh~~Cl~~~~~-~~~~~CPiCr~~ 61 (163)
...| ||....+ . .++ . |. .-||..|+.--.. .+.+.||.|+..
T Consensus 36 ~~yC-iC~~~~~----g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY----G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC----S-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC----C-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 4557 9987521 1 233 3 55 5799999872111 146889999765
No 160
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=35.74 E-value=9.4 Score=26.84 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=26.6
Q ss_pred cCCCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCC
Q 031240 9 ERAMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVC 58 (163)
Q Consensus 9 e~s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiC 58 (163)
+.+....|..|...+....+.-.--.||..||..|...... ....|-.|
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C 63 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLC 63 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHH
Confidence 34556789999887422223334459999999999665433 12345555
No 161
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.56 E-value=4.4 Score=24.75 Aligned_cols=45 Identities=20% Similarity=0.548 Sum_probs=26.2
Q ss_pred CCccccccccccccCcCCccEEe--c--CC-ChhhHHHHHHHHh-cCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL--R--CG-HTIHLECLKEMEK-HYRYTCPVCSK 60 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L--~--CG-H~fh~~Cl~~~~~-~~~~~CPiCr~ 60 (163)
....-| ||.+.- ...++. . |. .-||..|+.--.. .+.+.||.|++
T Consensus 7 ~e~~yC-~C~~~~----~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS----YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC----CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 344556 898751 122322 4 65 6899999882111 14678998864
No 162
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=34.64 E-value=30 Score=19.33 Aligned_cols=14 Identities=21% Similarity=0.800 Sum_probs=10.2
Q ss_pred CCCCCCCCCccchh
Q 031240 53 YTCPVCSKSLWDMS 66 (163)
Q Consensus 53 ~~CPiCr~~~~~~~ 66 (163)
+.|++|.+.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (60)
T 2adr_A 3 FVCEVCTRAFARQE 16 (60)
T ss_dssp BCCTTTCCCBSCHH
T ss_pred CcCCCCccccCCHH
Confidence 67888888876543
No 163
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=34.23 E-value=19 Score=21.01 Aligned_cols=13 Identities=46% Similarity=1.178 Sum_probs=9.8
Q ss_pred CCCCCCCCCCccc
Q 031240 52 RYTCPVCSKSLWD 64 (163)
Q Consensus 52 ~~~CPiCr~~~~~ 64 (163)
.+.|+.|.+.+..
T Consensus 14 ~~~C~~C~k~F~~ 26 (62)
T 1vd4_A 14 SFKCPVCSSTFTD 26 (62)
T ss_dssp EEECSSSCCEEEH
T ss_pred CccCCCCCchhcc
Confidence 3679999888754
No 164
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.13 E-value=26 Score=15.81 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.6
Q ss_pred CCCCCCCCCccchh
Q 031240 53 YTCPVCSKSLWDMS 66 (163)
Q Consensus 53 ~~CPiCr~~~~~~~ 66 (163)
+.|+.|.+.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 67999999885543
No 165
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.83 E-value=34 Score=28.79 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=37.0
Q ss_pred eecCCCccccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---------CCCCCCCCCCCc
Q 031240 7 CVERAMHHNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---------YRYTCPVCSKSL 62 (163)
Q Consensus 7 c~e~s~~~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---------~~~~CPiCr~~~ 62 (163)
-.+...+..|.||.+. ..-..-= .|...||..||+..+.. ..+.|=+|.-.-
T Consensus 87 ~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3467788999999964 2211111 78899999999998732 368899998663
No 166
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.79 E-value=32 Score=15.57 Aligned_cols=14 Identities=21% Similarity=0.800 Sum_probs=10.7
Q ss_pred CCCCCCCCCccchh
Q 031240 53 YTCPVCSKSLWDMS 66 (163)
Q Consensus 53 ~~CPiCr~~~~~~~ 66 (163)
+.|+.|.+.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 3 FVCEVCTRAFARQE 16 (29)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred eECCCCCcccCCHH
Confidence 67999999886543
No 167
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=33.69 E-value=36 Score=20.12 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=10.7
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|+.|.+.+.....
T Consensus 29 ~~~C~~C~~~f~~~~~ 44 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSD 44 (82)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CeeCCcCChhhCCHHH
Confidence 4678888887755433
No 168
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.44 E-value=12 Score=24.56 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=22.9
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHH
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKE 46 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~ 46 (163)
+...|.+|...+.-..+.-.--.||..||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34589999987422223233348999999999654
No 169
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=33.29 E-value=16 Score=23.18 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.3
Q ss_pred eccccc-ccccccccccccc
Q 031240 144 WDYQQH-ASVAAGKQLYCSE 162 (163)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~~~ 162 (163)
..|+.| +.. +.|||.+
T Consensus 19 ~~C~~H~~e~---l~lfC~~ 35 (84)
T 2dja_A 19 ITCLDHENEK---VNMYCVS 35 (84)
T ss_dssp CCCSSCSSSC---CCEEETT
T ss_pred CcCcCcCCcc---ccEEcCC
Confidence 579999 588 9999975
No 170
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.19 E-value=15 Score=22.71 Aligned_cols=38 Identities=18% Similarity=0.463 Sum_probs=23.9
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
...|+-|.+.+.+ + .+..-|..||..| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~--~--~v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG--R--VLEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS--C--CBCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC--e--eEEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 3567778776532 1 2335567777776 45888887753
No 171
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.13 E-value=19 Score=21.16 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=12.9
Q ss_pred eeCCCCCCCCcccceeeeccCCCCC
Q 031240 92 ILCNDCGANSHVQFHVIAHKCLSCK 116 (163)
Q Consensus 92 i~C~dC~~~~~~~~h~~~~kC~~C~ 116 (163)
-.|..||...-...|.--+.|+.||
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSC
T ss_pred ccCCCCCCceEEecCCCeEECCCCC
Confidence 3466666543333334445666666
No 172
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.10 E-value=26 Score=17.37 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=11.6
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|+.|.+.+....
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSD 25 (37)
T ss_dssp SBCCTTTCCCBSSHH
T ss_pred CccCCCCCcccCcHH
Confidence 478999999986543
No 173
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.95 E-value=40 Score=20.81 Aligned_cols=42 Identities=29% Similarity=0.581 Sum_probs=28.8
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.....|+.|.+.+... +..+..=|..||..| ++|-.|++.+.
T Consensus 13 ~~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 54 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAG--DQNVEYKGTVWHKDC---------FTCSNCKQVIG 54 (82)
T ss_dssp CCSCBCSSSCCBCCSS--SCEEECSSCEEETTT---------CCCSSSCCCCT
T ss_pred ccCCcCccCCcccccC--ceEEEECcccccccc---------CchhhCCCccC
Confidence 3456899999876422 223445588899887 56889988863
No 174
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.93 E-value=38 Score=21.77 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCc-cchhHH
Q 031240 51 YRYTCPVCSKSL-WDMSKL 68 (163)
Q Consensus 51 ~~~~CPiCr~~~-~~~~~~ 68 (163)
..+.|+.|.+.+ .....+
T Consensus 33 ~~~~C~~C~k~F~~~~~~L 51 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGL 51 (96)
T ss_dssp SCEECTTTCSCEESSHHHH
T ss_pred CCcCCCCCCCCcccCHHHH
Confidence 357899999988 664443
No 175
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=32.49 E-value=48 Score=16.11 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=12.0
Q ss_pred CCCCCCCCCccchhHH
Q 031240 53 YTCPVCSKSLWDMSKL 68 (163)
Q Consensus 53 ~~CPiCr~~~~~~~~~ 68 (163)
+.|+.|.+.+.....+
T Consensus 3 ~~C~~C~k~F~~~~~L 18 (33)
T 1rim_A 3 FACPECPKRFMRSDHL 18 (33)
T ss_dssp CCCSSSCCCCSSHHHH
T ss_pred ccCCCCCchhCCHHHH
Confidence 6799999998664443
No 176
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=31.61 E-value=78 Score=28.68 Aligned_cols=89 Identities=22% Similarity=0.544 Sum_probs=52.6
Q ss_pred CCcceecCCCccccccccccccC------cCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccchhHHHHhHHHHH
Q 031240 3 DKHRCVERAMHHNCPICFEFIFD------TMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEI 76 (163)
Q Consensus 3 ~~H~c~e~s~~~~CpIC~e~l~~------s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~~~~~~~~l~~~~ 76 (163)
++-+|-...-...||+|.-.+.+ ....--.|+||--||..|++.+.... |+-.+.-..|+.....-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~--------~~~~~~~~~w~~~~~~~ 74 (776)
T 4gut_A 3 GSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH--------KDGYDKYTTWKKIWTSN 74 (776)
T ss_dssp SBSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT--------STTHHHHHHHHHHHHHT
T ss_pred CccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC--------cchhHHHHHHHHHHHhC
Confidence 35577666678899999865422 11234568999999999999887642 33323333455433221
Q ss_pred -hcCCCChhhhc---CcceeeCC--CCCC
Q 031240 77 -ASTPMPAMYQN---KMVWILCN--DCGA 99 (163)
Q Consensus 77 -~~~~~p~e~~~---~~~~i~C~--dC~~ 99 (163)
...+.+..|-. ---+..|+ +|++
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~c~~~~c~~ 103 (776)
T 4gut_A 75 GKTEPSPKAFMADQQLPYWVQCTKPECRK 103 (776)
T ss_dssp CCSCCCHHHHHHHHTSCCEEECCCTTTCC
T ss_pred CccchhHHHHHHhccCcHhhhcCcccccc
Confidence 12222222221 13588999 9986
No 177
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=31.34 E-value=8.8 Score=24.54 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=28.5
Q ss_pred eeeCCCCCCCCcccceeeeccCCCCC-CCccccccCCCCCCCccccccccccceecccc
Q 031240 91 WILCNDCGANSHVQFHVIAHKCLSCK-SYNTRQTRGDTATTCSSGDELTILSHHWDYQQ 148 (163)
Q Consensus 91 ~i~C~dC~~~~~~~~h~~~~kC~~C~-synt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (163)
.+.|+ |+....+.-----++|. || ..+...++.=........+.+++....-..+|
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lqa~~~G 60 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQEEKYG 60 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHSSCCCS
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHHhhhcC
Confidence 46787 87654322222235788 88 67777766444323333344444444333333
No 178
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.19 E-value=7.8 Score=30.28 Aligned_cols=45 Identities=22% Similarity=0.591 Sum_probs=26.0
Q ss_pred cccccccccccCcCCccEEe--cCCChhhHHHHHHHHhc---C-CCCCCCCCCC
Q 031240 14 HNCPICFEFIFDTMKDITVL--RCGHTIHLECLKEMEKH---Y-RYTCPVCSKS 61 (163)
Q Consensus 14 ~~CpIC~e~l~~s~~~~~~L--~CGH~fh~~Cl~~~~~~---~-~~~CPiCr~~ 61 (163)
..|.+|... +. ....++ .|.-.||..|+..-+.. + .+.||.|...
T Consensus 175 c~C~vC~~~--~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGR--QD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCC--CC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCC--CC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 368888753 11 111223 88899999999864432 4 5789999753
No 179
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=29.96 E-value=17 Score=19.79 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.7
Q ss_pred ecccccccccccccccccc
Q 031240 144 WDYQQHASVAAGKQLYCSE 162 (163)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (163)
..+..|+.. ++|||.+
T Consensus 4 ~~C~~H~e~---l~lfC~~ 19 (42)
T 1fre_A 4 EKCSEHDER---LKLYCKD 19 (42)
T ss_dssp CCCCSSCSS---CCCCCCS
T ss_pred ccchhhCCe---eeEEeCC
Confidence 357889877 9999975
No 180
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.78 E-value=30 Score=20.79 Aligned_cols=40 Identities=25% Similarity=0.540 Sum_probs=28.2
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
...|+.|.+.+... ..++..=|..||..| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPG--SRKLEYGGQTWHEHC---------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSS--SCEECSTTCCEETTT---------CBCTTTCCBTT
T ss_pred CCCCccCCCccccC--ccEEEECccccCccc---------CeECCCCCcCC
Confidence 46799999876421 234556688999888 56889988763
No 181
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.50 E-value=24 Score=20.83 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=8.4
Q ss_pred CCCCCCCCCCccc
Q 031240 52 RYTCPVCSKSLWD 64 (163)
Q Consensus 52 ~~~CPiCr~~~~~ 64 (163)
.+.|++|.+.+..
T Consensus 14 ~~~C~~C~k~f~~ 26 (72)
T 1x6e_A 14 PYGCVECGKAFSR 26 (72)
T ss_dssp CEECSSSCCEESS
T ss_pred CccCCCCCCccCC
Confidence 3567777776654
No 182
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.41 E-value=22 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=19.7
Q ss_pred ceeeCCCCCCCCcccceeeeccCCCCC
Q 031240 90 VWILCNDCGANSHVQFHVIAHKCLSCK 116 (163)
Q Consensus 90 ~~i~C~dC~~~~~~~~h~~~~kC~~C~ 116 (163)
..++|.-||.. .||+--..|..||
T Consensus 16 tH~lCrRCG~~---syH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRV---SYNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSB---CEETTTTEETTTC
T ss_pred ceeeecccCcc---hhccccccccccC
Confidence 68999999985 4677777898888
No 183
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.28 E-value=27 Score=21.34 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=28.6
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.....|+.|.+.+..... ++..=|..||..| ++|-.|++++.
T Consensus 9 ~~~~~C~~C~~~I~~~~~--~~~a~~~~~H~~C---------F~C~~C~~~L~ 50 (77)
T 1g47_A 9 LASATCERCKGGFAPAEK--IVNSNGELYHEQC---------FVCAQCFQQFP 50 (77)
T ss_dssp CCCCBCSSSCCBCCSTTT--CEEETTEEECTTT---------CCCTTTCCCCG
T ss_pred CCCCCchhcCCccCCCce--EEEeCccEecccc---------CeECCCCCCCC
Confidence 345789999987643222 2334577888877 56889998874
No 184
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=29.24 E-value=7.5 Score=22.86 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=24.7
Q ss_pred ccccccccccCcCCccEEe---cCCChhhHHHHHHHH---hcCCCCCCCCC
Q 031240 15 NCPICFEFIFDTMKDITVL---RCGHTIHLECLKEME---KHYRYTCPVCS 59 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L---~CGH~fh~~Cl~~~~---~~~~~~CPiCr 59 (163)
.|.||.....+. ...+- .|.-=||..|+.--. ....+.||.|+
T Consensus 4 ~cc~C~~p~~~~--~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK--VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT--CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC--CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 577887653221 11222 466788999865321 12568899885
No 185
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=28.73 E-value=34 Score=23.18 Aligned_cols=26 Identities=27% Similarity=0.787 Sum_probs=20.7
Q ss_pred CcceeeCCCCCCCCcccceeeeccCCCCC
Q 031240 88 KMVWILCNDCGANSHVQFHVIAHKCLSCK 116 (163)
Q Consensus 88 ~~~~i~C~dC~~~~~~~~h~~~~kC~~C~ 116 (163)
.+..++|.-||.. .||+--..|..||
T Consensus 13 ~KtH~lCrRCG~~---sfH~qK~~CgkCG 38 (97)
T 2zkr_2 13 NKTHTLCRRCGSK---AYHLQKSTCGKCG 38 (97)
T ss_dssp CCCEECCTTTCSS---CEETTSCCBTTTC
T ss_pred CCCCCcCCCCCCc---cCcCccccCcccC
Confidence 4678999999986 4577777899998
No 186
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.27 E-value=34 Score=17.91 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=10.7
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|+.|.+.+....
T Consensus 10 ~~~C~~C~k~f~~~~ 24 (45)
T 2epq_A 10 PYSCPVCGLRFKRKD 24 (45)
T ss_dssp SSEETTTTEECSCHH
T ss_pred CCcCCCCCcccCCHH
Confidence 467888888875543
No 187
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.39 E-value=72 Score=16.59 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=12.9
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (46)
T 2emz_A 12 PFKCNECGKGFGRRSHL 28 (46)
T ss_dssp SCCCSSSCCCCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 47899999998665444
No 188
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=27.37 E-value=14 Score=26.79 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=29.3
Q ss_pred CCccccccccccccCcCCccEEe---cCCChhhHHHHHHHH----hcCCCCCCCCCCC
Q 031240 11 AMHHNCPICFEFIFDTMKDITVL---RCGHTIHLECLKEME----KHYRYTCPVCSKS 61 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L---~CGH~fh~~Cl~~~~----~~~~~~CPiCr~~ 61 (163)
.....| ||.... +. .. .++ .|.--||..|+.--. ....+.||.|+..
T Consensus 6 ~~~~~C-~C~~~~-~~-~~-~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPE-DE-SK-FYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEEC-CT-TS-CEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCC-CC-CC-CEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 998652 11 11 233 778899999985321 1357899999764
No 189
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.25 E-value=30 Score=20.80 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=27.6
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
...|+.|.+.+... ..++..=|..||..| ++|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPG--TRKMEYKGSSWHETC---------FICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSS--SCEEEETTEEEETTT---------TCCSSSCCCCC
T ss_pred CCCCccCCCcccCC--ceEEEECcCeecccC---------CcccccCCccC
Confidence 35799999876432 224445678888877 56889988864
No 190
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.20 E-value=74 Score=20.31 Aligned_cols=61 Identities=23% Similarity=0.544 Sum_probs=33.2
Q ss_pred CCCCCCCCCCccchhHHHHhHHHHHhcCCCChhhhcCcceeeCCCCCCCCc----ccceee------eccCCCCC-CCcc
Q 031240 52 RYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWILCNDCGANSH----VQFHVI------AHKCLSCK-SYNT 120 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~~~~l~~~~~~~~~p~e~~~~~~~i~C~dC~~~~~----~~~h~~------~~kC~~C~-synt 120 (163)
.+.|++|.+.+.....+ ..-+..... ........|..|++... ...|.. ..+|..|+ +|.+
T Consensus 35 ~~~C~~C~~~f~~~~~l----~~H~~~~~~----~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 106 (124)
T 2dlq_A 35 PFECPKCGKCYFRKENL----LEHEARNCM----NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ 106 (124)
T ss_dssp SCBCTTTCCBCSSHHHH----HHHHHHCCC----CSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESS
T ss_pred CeECCCCCchhcCHHHH----HHHHhhhhc----CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCC
Confidence 58899999988654333 332222111 01123567999997653 222321 24688888 4443
No 191
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.18 E-value=3.2 Score=26.88 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.3
Q ss_pred cCCChhhHHHHHHHH
Q 031240 34 RCGHTIHLECLKEME 48 (163)
Q Consensus 34 ~CGH~fh~~Cl~~~~ 48 (163)
.||+.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 599999999998874
No 192
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.13 E-value=31 Score=21.94 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=29.1
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.....|+.|.+.+. ...+..-|..||..| ++|-.|++.+.
T Consensus 23 ~~~~~C~~C~~~I~----~~~v~a~~~~~H~~C---------F~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIR----GPFLVALGKSWHPEE---------FNCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCC----SCEEEETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCCccCCCEec----ceEEEECCccccccC---------CccCCCCCCCC
Confidence 34567999998763 224456688999887 56999998864
No 193
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.12 E-value=32 Score=15.79 Aligned_cols=13 Identities=23% Similarity=0.841 Sum_probs=9.8
Q ss_pred CCCCCCCCCccch
Q 031240 53 YTCPVCSKSLWDM 65 (163)
Q Consensus 53 ~~CPiCr~~~~~~ 65 (163)
+.|+.|.+.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6799998887543
No 194
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.12 E-value=46 Score=16.10 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.9
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 4789999998865433
No 195
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.75 E-value=26 Score=21.46 Aligned_cols=40 Identities=33% Similarity=0.617 Sum_probs=28.5
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
....|+.|.+.+.... .+..-|..||..| ++|-.|++++.
T Consensus 8 ~~~~C~~C~~~I~~~~---~v~a~~~~~H~~C---------F~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE---KVSSLGKDWHKFC---------LKCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTT---EEEETTEEEETTT---------CBCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCe---EEEECCeEeeCCC---------CCCCCCCCccC
Confidence 3568999998764222 3445688888887 56999998864
No 196
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.73 E-value=14 Score=30.62 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHH
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKE 46 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~ 46 (163)
....|.+|...+.-..+.-.--.||+.||..|...
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp -----------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 34678888876321122333447888888888654
No 197
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.46 E-value=36 Score=20.09 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.2
Q ss_pred eecccccccccccccccccc
Q 031240 143 HWDYQQHASVAAGKQLYCSE 162 (163)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (163)
...|..|+.. ++|||.+
T Consensus 18 ~~~C~~H~e~---L~lfC~~ 34 (57)
T 2egm_A 18 QGICPKHQEA---LKLFCEV 34 (57)
T ss_dssp TSBCTTTCCB---CCEEETT
T ss_pred cCcChhhCce---eeEEcCC
Confidence 3569999988 9999975
No 198
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.39 E-value=76 Score=16.53 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=12.6
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSC 28 (46)
T ss_dssp SSSBTTTTBCCSSHHHH
T ss_pred CcCCCCCCchhCCHHHH
Confidence 47899999998665443
No 199
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.17 E-value=53 Score=20.01 Aligned_cols=10 Identities=20% Similarity=1.208 Sum_probs=5.0
Q ss_pred CCCCCCCCCc
Q 031240 53 YTCPVCSKSL 62 (163)
Q Consensus 53 ~~CPiCr~~~ 62 (163)
+.|+.|.+.+
T Consensus 32 ~~C~~C~k~f 41 (88)
T 1llm_C 32 FACDICGRKF 41 (88)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCCcc
Confidence 4455555544
No 200
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.75 E-value=55 Score=19.36 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=10.0
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 7 ~~~C~~C~k~f~~~~~ 22 (78)
T 2d9h_A 7 GLQCEICGFTCRQKAS 22 (78)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CeECCCCCCeeCCHHH
Confidence 3568888777655433
No 201
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.68 E-value=76 Score=16.29 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=12.6
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (44)
T 2eou_A 12 TSECQECGKIFRHSSLL 28 (44)
T ss_dssp CCCCTTTCCCCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 47899999998664433
No 202
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=25.58 E-value=60 Score=20.34 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=8.4
Q ss_pred CCCCCCCCCCccc
Q 031240 52 RYTCPVCSKSLWD 64 (163)
Q Consensus 52 ~~~CPiCr~~~~~ 64 (163)
.+.|++|.+.+..
T Consensus 45 ~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 45 PYTCDICHKAFRR 57 (106)
T ss_dssp CCBCSSSCCBCSC
T ss_pred CcCCCCccchhCC
Confidence 4667777776644
No 203
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.55 E-value=21 Score=16.31 Aligned_cols=13 Identities=38% Similarity=0.840 Sum_probs=9.8
Q ss_pred CCCCCCCCCccch
Q 031240 53 YTCPVCSKSLWDM 65 (163)
Q Consensus 53 ~~CPiCr~~~~~~ 65 (163)
+.|+.|.+.+...
T Consensus 4 ~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 4 YSCSVCGKRFSLK 16 (28)
T ss_dssp EECSSSCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 5799998887553
No 204
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=25.47 E-value=43 Score=24.31 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=20.1
Q ss_pred eeCCCCCCCCc---ccceeeeccCCCCCCCccccc
Q 031240 92 ILCNDCGANSH---VQFHVIAHKCLSCKSYNTRQT 123 (163)
Q Consensus 92 i~C~dC~~~~~---~~~h~~~~kC~~C~synt~~~ 123 (163)
++|..|+.+.. ..--.+.++|..||+-.+...
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~ 139 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQH 139 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCccccc
Confidence 67888876442 111246678888887665543
No 205
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.79 E-value=15 Score=16.63 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=8.7
Q ss_pred CCCCCCCCCccc
Q 031240 53 YTCPVCSKSLWD 64 (163)
Q Consensus 53 ~~CPiCr~~~~~ 64 (163)
+.|+.|.+.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 568888887643
No 206
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.71 E-value=44 Score=20.07 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=28.1
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
....|+.|.+.+........+..-|..||..| ++|-.|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C---------F~C~~C~~~L 45 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDC---------FNCKKCSLSL 45 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTT---------CBCSSSCCBC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCccc---------CEeccCCCcC
Confidence 34679999988643001123345688999888 5699999876
No 207
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.71 E-value=37 Score=20.39 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=27.4
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
....|+.|.+.+... ...+..=|..||..| ++|-.|++.+
T Consensus 4 ~~~~C~~C~~~I~~~--~~~~~a~~~~~H~~C---------F~C~~C~~~L 43 (72)
T 1x61_A 4 GSSGCGGCGEDVVGD--GAGVVALDRVFHVGC---------FVCSTCRAQL 43 (72)
T ss_dssp CCCCCSSSCSCCCSS--SCCEECSSSEECTTT---------CBCSSSCCBC
T ss_pred CCCCCccCCCccCCC--ceEEEECCCeEcccC---------CcccccCCcC
Confidence 346799999875432 123445578888887 5698998876
No 208
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=24.68 E-value=24 Score=20.33 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.5
Q ss_pred ecccccccccccccccccc
Q 031240 144 WDYQQHASVAAGKQLYCSE 162 (163)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (163)
..|+.|+.. ++|||.+
T Consensus 9 ~~C~~H~e~---l~lfC~~ 24 (53)
T 2did_A 9 SLCPQHHEA---LSLFCYE 24 (53)
T ss_dssp CBCTTTCCB---CCEEESS
T ss_pred CcChhhCCe---eeEEeCC
Confidence 468999988 9999975
No 209
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=24.66 E-value=5.8 Score=23.49 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=14.5
Q ss_pred ecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 33 LRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 33 L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
+.||++|=.+=++.+ ...+||.|...+
T Consensus 7 ~rCg~~fs~~el~~l---P~IrCpyCGyri 33 (48)
T 4ayb_P 7 GKCWKTFTDEQLKVL---PGVRCPYCGYKI 33 (48)
T ss_dssp CCTTTTCCCCCSCCC---SSSCCTTTCCSC
T ss_pred eccCCCccHHHHhhC---CCcccCccCcEE
Confidence 456666632211111 246788888776
No 210
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.60 E-value=22 Score=16.20 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=10.1
Q ss_pred CCCCCCCCCccchh
Q 031240 53 YTCPVCSKSLWDMS 66 (163)
Q Consensus 53 ~~CPiCr~~~~~~~ 66 (163)
+.|+.|.+.+....
T Consensus 4 ~~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 4 FSCSLCPQRSRDFS 17 (27)
T ss_dssp EECSSSSCEESSHH
T ss_pred ccCCCcChhhCCHH
Confidence 57899988875543
No 211
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.53 E-value=42 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.779 Sum_probs=12.2
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 10 ~~~C~~C~k~f~~~~~ 25 (42)
T 2yte_A 10 PYSCAECKETFSDNNR 25 (42)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeECCCCCCccCCHHH
Confidence 4789999999865443
No 212
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.29 E-value=27 Score=21.40 Aligned_cols=37 Identities=30% Similarity=0.643 Sum_probs=25.4
Q ss_pred ccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 15 NCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 15 ~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.|+.|.+.+.... .+..-|..||..| ++|-.|++++.
T Consensus 2 ~C~~C~~~I~~~~---~v~a~~~~~H~~C---------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAE---RVTSLGKDWHRPC---------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGG---EEEETTEEEETTT---------CBCTTTCCBCC
T ss_pred cCCCCCCEEECce---EEEECCccccCCC---------CCccccCccCC
Confidence 5788888754221 2334488899887 56999998864
No 213
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=24.03 E-value=62 Score=19.45 Aligned_cols=16 Identities=13% Similarity=0.619 Sum_probs=11.0
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 34 ~~~C~~C~~~f~~~~~ 49 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDH 49 (90)
T ss_dssp CEECTTTCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 4678888887755433
No 214
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.02 E-value=47 Score=16.96 Aligned_cols=15 Identities=20% Similarity=0.815 Sum_probs=11.7
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2eos_A 11 PYPCEICGTRFRHLQ 25 (42)
T ss_dssp CBCCSSSCCCBSSHH
T ss_pred CEECCCCCCccCCHH
Confidence 478999999986543
No 215
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.82 E-value=75 Score=16.56 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=12.6
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~F~~~~~L 28 (46)
T 2eom_A 12 GHRCSDCGKFFLQASNF 28 (46)
T ss_dssp SCCCSSSCCCCSSHHHH
T ss_pred CcCCCCCCCeeCChHHH
Confidence 47899999998664433
No 216
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.77 E-value=9.4 Score=23.49 Aligned_cols=43 Identities=21% Similarity=0.537 Sum_probs=25.5
Q ss_pred ccccccccccccCcCCccEEe--c--CC-ChhhHHHHHHHHh-cCCCCCCCCCC
Q 031240 13 HHNCPICFEFIFDTMKDITVL--R--CG-HTIHLECLKEMEK-HYRYTCPVCSK 60 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L--~--CG-H~fh~~Cl~~~~~-~~~~~CPiCr~ 60 (163)
..-| ||...- ...++. . |. .-||..|+.--.. .+.+.||.|+.
T Consensus 11 ~~yC-~C~~~~----~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS----YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC----CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC----CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4456 898741 122222 4 54 7899999872111 14678998865
No 217
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.72 E-value=87 Score=16.24 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=12.4
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRL 28 (46)
T ss_dssp TTCCSSSCCCCSSHHHH
T ss_pred CeeCCCCCcccCCHHHH
Confidence 47899999998664443
No 218
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.56 E-value=50 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.356 Sum_probs=13.9
Q ss_pred cCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 34 RCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 34 ~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
.=|..+|..|+.+.. ..+|..|++.|
T Consensus 48 ~~g~~yC~~cy~~~~---~~~C~~C~~~I 73 (126)
T 2xqn_T 48 VNDKPVCKPCYVKNH---AVVCQGCHNAI 73 (126)
T ss_dssp ETTEEEEHHHHHHHS---CCBCTTTCSBC
T ss_pred ECCEEechHHhCcCc---CccCcccCCcC
Confidence 445555666655432 24566666654
No 219
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.49 E-value=41 Score=21.12 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=8.4
Q ss_pred CCCCCCCCCCc
Q 031240 52 RYTCPVCSKSL 62 (163)
Q Consensus 52 ~~~CPiCr~~~ 62 (163)
-..||+|+.++
T Consensus 8 iL~CP~ck~~L 18 (69)
T 2pk7_A 8 ILACPICKGPL 18 (69)
T ss_dssp TCCCTTTCCCC
T ss_pred heeCCCCCCcC
Confidence 36799998765
No 220
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.48 E-value=39 Score=17.18 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=11.6
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2ytb_A 11 PYRCDQCGKAFSQKG 25 (42)
T ss_dssp SBCCTTTTCCBSSHH
T ss_pred CeeCCCccchhCCHH
Confidence 478999999986543
No 221
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.15 E-value=56 Score=17.03 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.8
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2yti_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp TTCCSSSCCCCSSHH
T ss_pred CeECCCCCcccCChh
Confidence 478999999986543
No 222
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.99 E-value=73 Score=16.57 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=12.5
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~F~~~~~L 28 (46)
T 2en9_A 12 LFKCNECKKTFTQSSSL 28 (46)
T ss_dssp CCBCTTTCCBCSSHHHH
T ss_pred CEECCccCcccCCHHHH
Confidence 47899999988664443
No 223
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.90 E-value=57 Score=16.97 Aligned_cols=17 Identities=35% Similarity=0.858 Sum_probs=12.8
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~f~~~~~L 28 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRL 28 (46)
T ss_dssp SCCCSSSCCCCSSHHHH
T ss_pred CcCCCcCCchhCCHHHH
Confidence 47899999998664433
No 224
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.89 E-value=57 Score=17.03 Aligned_cols=16 Identities=25% Similarity=0.758 Sum_probs=12.4
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eoh_A 12 PYECKECRKTFIQIGH 27 (46)
T ss_dssp SCCCSSSCCCCSSHHH
T ss_pred CcCCCCcCchhCCHHH
Confidence 4789999999866443
No 225
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=22.84 E-value=41 Score=20.13 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=13.2
Q ss_pred eeCCCCCCCCcccceeeeccCCCCC
Q 031240 92 ILCNDCGANSHVQFHVIAHKCLSCK 116 (163)
Q Consensus 92 i~C~dC~~~~~~~~h~~~~kC~~C~ 116 (163)
-.|..||......-|.--+.|+.|+
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTC
T ss_pred ccCcCCCCceeEeccCCEEECCCCC
Confidence 3466666533323344455677775
No 226
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.61 E-value=57 Score=16.98 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=12.3
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eq2_A 12 PYQCNECGKAFSQTSK 27 (46)
T ss_dssp SSSCCSSCCCCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4789999999865443
No 227
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.55 E-value=56 Score=16.71 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=11.8
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (44)
T 2en7_A 12 PYVCNECGKAFRSKS 26 (44)
T ss_dssp SSCCTTTCCCCSSHH
T ss_pred CeECCCCCCccCCHH
Confidence 478999999986543
No 228
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.42 E-value=18 Score=23.26 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.2
Q ss_pred CCCCCCCCCccch
Q 031240 53 YTCPVCSKSLWDM 65 (163)
Q Consensus 53 ~~CPiCr~~~~~~ 65 (163)
+.||+|.+.+...
T Consensus 29 h~C~~Cgk~F~~~ 41 (85)
T 2lv2_A 29 HLCPVCGESFASK 41 (85)
T ss_dssp EECTTSCCEESSH
T ss_pred EECCCCCCCcCcH
Confidence 5688888877553
No 229
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.41 E-value=21 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=21.0
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHH
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLK 45 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~ 45 (163)
+..|++|...+.-..+.-.--.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 468999987632222223334889999888844
No 230
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.24 E-value=35 Score=21.46 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=19.0
Q ss_pred cceeeCCCCCCCCcccce-eeeccCCCCCCCcccc
Q 031240 89 MVWILCNDCGANSHVQFH-VIAHKCLSCKSYNTRQ 122 (163)
Q Consensus 89 ~~~i~C~dC~~~~~~~~h-~~~~kC~~C~synt~~ 122 (163)
...+.|.+|++...+.-| -.--+|..||.--.+.
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 467889999875433222 0112577777544333
No 231
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.23 E-value=52 Score=20.05 Aligned_cols=61 Identities=25% Similarity=0.455 Sum_probs=38.8
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCccchhHHHHhHHHHHhcCCCChhhhcCccee
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLWDMSKLWSKIDQEIASTPMPAMYQNKMVWI 92 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~~~~~~~~~l~~~~~~~~~p~e~~~~~~~i 92 (163)
...|+.|.+.+.+......+..-|..||..| ++|-.|++++.. ..|-.+...+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C---------F~C~~C~~~L~~------------------~~f~~~~g~~ 57 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC---------FNCGKCSVSLVG------------------KGFLTQNKEI 57 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG---------CBCTTTCCBCSS------------------SCEEEETTEE
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc---------CChhhCCCcCCC------------------CceEeECCEE
Confidence 4679999987643001124455678899888 569999887631 1122334678
Q ss_pred eCCCCCCC
Q 031240 93 LCNDCGAN 100 (163)
Q Consensus 93 ~C~dC~~~ 100 (163)
+|.+|-.+
T Consensus 58 yC~~cy~~ 65 (76)
T 1x68_A 58 FCQKCGSG 65 (76)
T ss_dssp EETTTTCC
T ss_pred ECHHHhhh
Confidence 89988654
No 232
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.23 E-value=33 Score=24.60 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred ceeeCCCCCCCCcccceeeeccCCCCCCCc
Q 031240 90 VWILCNDCGANSHVQFHVIAHKCLSCKSYN 119 (163)
Q Consensus 90 ~~i~C~dC~~~~~~~~h~~~~kC~~C~syn 119 (163)
....|..|+...... .-...|+.||+-.
T Consensus 131 ~~y~C~~Cg~~~~~~--~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL--PPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCEESSC--CGGGBCTTTCCBE
T ss_pred EEEECCCCCCcccCC--CCCCcCCCCCCcc
Confidence 467899999876532 1123799999863
No 233
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.12 E-value=40 Score=20.74 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=20.3
Q ss_pred CccccccccccccCcCCccEEe-cCCChhhHHHHH
Q 031240 12 MHHNCPICFEFIFDTMKDITVL-RCGHTIHLECLK 45 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L-~CGH~fh~~Cl~ 45 (163)
....|++|...+.+...-+.-- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4568999998753322111112 677889999964
No 234
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.02 E-value=23 Score=27.16 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=20.9
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHH
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLK 45 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~ 45 (163)
+..|.+|...+.-..+.-.--.||..||..|..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 458889987642222333344888888888854
No 235
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.94 E-value=42 Score=19.16 Aligned_cols=7 Identities=29% Similarity=0.805 Sum_probs=3.8
Q ss_pred ccCCCCC
Q 031240 110 HKCLSCK 116 (163)
Q Consensus 110 ~kC~~C~ 116 (163)
++|..||
T Consensus 25 lvC~~CG 31 (50)
T 1pft_A 25 IVCAKCG 31 (50)
T ss_dssp EEESSSC
T ss_pred EECcccC
Confidence 3555555
No 236
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.77 E-value=52 Score=17.26 Aligned_cols=15 Identities=40% Similarity=0.804 Sum_probs=11.7
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eon_A 12 PYKCQVCGKAFRVSS 26 (46)
T ss_dssp SCBCSSSCCBCSSHH
T ss_pred ccCCCCCCcccCcHH
Confidence 478999999986543
No 237
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.74 E-value=52 Score=17.15 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.7
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2enf_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SCBCSSSCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 478999999986543
No 238
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.64 E-value=30 Score=25.17 Aligned_cols=49 Identities=14% Similarity=0.356 Sum_probs=33.6
Q ss_pred Cccccccccccc-cCcCCccEEecCCChhhHHHHHHHHh-cCCCCCCCCCCC
Q 031240 12 MHHNCPICFEFI-FDTMKDITVLRCGHTIHLECLKEMEK-HYRYTCPVCSKS 61 (163)
Q Consensus 12 ~~~~CpIC~e~l-~~s~~~~~~L~CGH~fh~~Cl~~~~~-~~~~~CPiCr~~ 61 (163)
.+..|.+|...| |-......-..|.|.+|..|-. |.. ...+.|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 478999999874 2223444556999999999973 222 235678888765
No 239
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=21.54 E-value=75 Score=16.51 Aligned_cols=17 Identities=29% Similarity=0.727 Sum_probs=12.5
Q ss_pred CCCCCCCCCCccchhHH
Q 031240 52 RYTCPVCSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~~ 68 (163)
.+.|++|.+.+.....+
T Consensus 12 ~~~C~~C~k~F~~~~~L 28 (46)
T 2emk_A 12 PYECKECGKAFSQTTHL 28 (46)
T ss_dssp SCBCSSSCCBCSCHHHH
T ss_pred ceECCCCCchhCCHHHH
Confidence 47899999998664443
No 240
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=53 Score=19.91 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=28.4
Q ss_pred CCccccccccccccCcC-CccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTM-KDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~-~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.....|+.|.+.+.... ....+..=|..||..| ++|-.|++++.
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 57 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC---------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTT---------CBCSSSCCBCT
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCccc---------CEehhcCCCCC
Confidence 34567999988764300 1123445577888877 56999988763
No 241
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.33 E-value=27 Score=15.83 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=10.1
Q ss_pred CCCCCCCCCccchh
Q 031240 53 YTCPVCSKSLWDMS 66 (163)
Q Consensus 53 ~~CPiCr~~~~~~~ 66 (163)
+.|+.|.+.+....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2m0f_A 3 LKCRECGKQFTTSG 16 (29)
T ss_dssp EECTTTSCEESCHH
T ss_pred ccCCCCCCccCChh
Confidence 56999988875543
No 242
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.33 E-value=16 Score=19.76 Aligned_cols=14 Identities=29% Similarity=0.835 Sum_probs=9.8
Q ss_pred CCCCCCCCCCccch
Q 031240 52 RYTCPVCSKSLWDM 65 (163)
Q Consensus 52 ~~~CPiCr~~~~~~ 65 (163)
.+.|++|.+.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 12 QVACEICGKIFRDV 25 (48)
T ss_dssp SEEETTTTEEESSH
T ss_pred CeeCCCCCcccCCH
Confidence 36688888877543
No 243
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.31 E-value=41 Score=21.08 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.1
Q ss_pred CCCCCCCCCCc
Q 031240 52 RYTCPVCSKSL 62 (163)
Q Consensus 52 ~~~CPiCr~~~ 62 (163)
-..||+|+.++
T Consensus 8 iL~CP~ck~~L 18 (68)
T 2jr6_A 8 ILVCPVTKGRL 18 (68)
T ss_dssp CCBCSSSCCBC
T ss_pred heECCCCCCcC
Confidence 35799998765
No 244
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.27 E-value=62 Score=16.77 Aligned_cols=15 Identities=33% Similarity=0.735 Sum_probs=11.8
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytr_A 12 PYKCNECGKAFSQTS 26 (46)
T ss_dssp TTCCTTTCCCCSSHH
T ss_pred CcCCCCCCCccCCHH
Confidence 478999999986543
No 245
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.27 E-value=28 Score=16.81 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=11.2
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 7 ~~~C~~C~k~f~~~~ 21 (35)
T 2elx_A 7 GYVCALCLKKFVSSI 21 (35)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCcchhCCHH
Confidence 467999999886543
No 246
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=21.27 E-value=65 Score=16.74 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=12.2
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2em0_A 12 TWKCRECDMCFSQASS 27 (46)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4789999999865443
No 247
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.26 E-value=39 Score=21.14 Aligned_cols=10 Identities=40% Similarity=1.192 Sum_probs=7.5
Q ss_pred CCCCCCCCCc
Q 031240 53 YTCPVCSKSL 62 (163)
Q Consensus 53 ~~CPiCr~~~ 62 (163)
..||+|+.++
T Consensus 9 L~CP~ck~~L 18 (68)
T 2hf1_A 9 LVCPLCKGPL 18 (68)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCCcC
Confidence 5699998765
No 248
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.12 E-value=57 Score=20.56 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCcc
Q 031240 11 AMHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSLW 63 (163)
Q Consensus 11 s~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~~ 63 (163)
.....|..|.+.+.+ ..+..-|..||..| ++|-.|++.+.
T Consensus 23 ~~~~~C~~C~~~I~~----~~~~a~~~~~H~~C---------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG----AVVKARDKYRHPEC---------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCS----CCEESSSCEECTTT---------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecc----cEEEECCceECccC---------CEecCCCCCCC
Confidence 345679999987643 23446678899888 56999998863
No 249
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=21.02 E-value=32 Score=19.42 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=13.3
Q ss_pred eeccccc-ccccccccccccc
Q 031240 143 HWDYQQH-ASVAAGKQLYCSE 162 (163)
Q Consensus 143 ~~~~~~~-~~~~~~~~~~~~~ 162 (163)
...++.| +.. +.|||.+
T Consensus 6 ~~~C~~H~~e~---l~lfC~~ 23 (50)
T 2yvr_A 6 TVYCNVHKHEP---LVLFCES 23 (50)
T ss_dssp SCBCSSSTTCB---CCEEETT
T ss_pred CCcCcCCCCCC---EEEEeCC
Confidence 4558889 788 9999974
No 250
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.99 E-value=36 Score=23.26 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHhc
Q 031240 38 TIHLECLKEMEKH 50 (163)
Q Consensus 38 ~fh~~Cl~~~~~~ 50 (163)
-||+.||.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999753
No 251
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.88 E-value=36 Score=23.20 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHh
Q 031240 38 TIHLECLKEMEK 49 (163)
Q Consensus 38 ~fh~~Cl~~~~~ 49 (163)
-||+.||..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 252
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.84 E-value=29 Score=20.67 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.7
Q ss_pred ecccccccccccccccccc
Q 031240 144 WDYQQHASVAAGKQLYCSE 162 (163)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (163)
..|+.|+.. ++|||.+
T Consensus 15 ~~C~~H~e~---L~lfC~~ 30 (59)
T 2yrg_A 15 DHCARHGEK---LLLFCQE 30 (59)
T ss_dssp SBCTTTCCB---CCEEETT
T ss_pred ccChhhCce---eeeecCC
Confidence 469999988 9999975
No 253
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.22 E-value=21 Score=16.52 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=8.9
Q ss_pred CCCCCCCCCccc
Q 031240 53 YTCPVCSKSLWD 64 (163)
Q Consensus 53 ~~CPiCr~~~~~ 64 (163)
+.|+.|.+.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 578889887644
No 254
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.69 E-value=20 Score=16.56 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=9.5
Q ss_pred CCCCCCCCCccch
Q 031240 53 YTCPVCSKSLWDM 65 (163)
Q Consensus 53 ~~CPiCr~~~~~~ 65 (163)
+.|+.|.+.+...
T Consensus 4 ~~C~~C~k~f~~~ 16 (27)
T 2kvg_A 4 YRCPLCRAGCPSL 16 (27)
T ss_dssp EEETTTTEEESCH
T ss_pred cCCCCCCcccCCH
Confidence 5788998887543
No 255
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.65 E-value=26 Score=16.03 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=9.4
Q ss_pred CCCCCCCCCccch
Q 031240 53 YTCPVCSKSLWDM 65 (163)
Q Consensus 53 ~~CPiCr~~~~~~ 65 (163)
+.|+.|.+.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 5688998887543
No 256
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.63 E-value=40 Score=20.65 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=18.7
Q ss_pred eeCCCCCCCCcccceeeeccCCCCCCCcccc
Q 031240 92 ILCNDCGANSHVQFHVIAHKCLSCKSYNTRQ 122 (163)
Q Consensus 92 i~C~dC~~~~~~~~h~~~~kC~~C~synt~~ 122 (163)
+.|+.|+....+- +-.||..|..|+-.+
T Consensus 12 ~~Cd~C~~~pi~G---~RykC~~C~d~DLC~ 39 (63)
T 2e5r_A 12 VECSYCHSESMMG---FRYRCQQCHNYQLCQ 39 (63)
T ss_dssp SCCSSSCCCSSCS---CEEEESSCSSCEECH
T ss_pred CCCcCCCCcceec---ceEEecCCCCchhHH
Confidence 7899998754433 334777777776554
No 257
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=51 Score=20.17 Aligned_cols=38 Identities=24% Similarity=0.505 Sum_probs=27.1
Q ss_pred CccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 12 MHHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 12 ~~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
....|+.|.+.+.+ . .+..=|..||..| ++|-.|++++
T Consensus 14 ~~~~C~~C~~~I~~--~--~v~a~~~~~H~~C---------F~C~~C~~~L 51 (80)
T 2cuq_A 14 FAPRCARCSKTLTQ--G--GVTYRDQPWHREC---------LVCTGCQTPL 51 (80)
T ss_dssp SSCCCTTTCCCCCS--C--CEESSSSEECTTT---------CBCSSSCCBC
T ss_pred cCCcCCCCCCEecC--c--EEEECCchhhhhh---------CCcccCCCcC
Confidence 34679999887642 2 3445678888877 5688998876
No 258
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.54 E-value=67 Score=16.63 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=12.2
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2ep1_A 12 PYECSDCGKSFIKKSQ 27 (46)
T ss_dssp SSCCSSSCCCCSSHHH
T ss_pred CcCCCCCCchhCCHHH
Confidence 4789999999865433
No 259
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.38 E-value=60 Score=16.87 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=12.2
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (47)
T 2epx_A 12 PYECIECGKAFIQNTS 27 (47)
T ss_dssp SBCCSSSCCCBSSHHH
T ss_pred CEECCccCchhCChHH
Confidence 4789999999865443
No 260
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.34 E-value=61 Score=19.21 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=27.0
Q ss_pred ccccccccccccCcCCccEEecCCChhhHHHHHHHHhcCCCCCCCCCCCc
Q 031240 13 HHNCPICFEFIFDTMKDITVLRCGHTIHLECLKEMEKHYRYTCPVCSKSL 62 (163)
Q Consensus 13 ~~~CpIC~e~l~~s~~~~~~L~CGH~fh~~Cl~~~~~~~~~~CPiCr~~~ 62 (163)
...|+.|.+.+.+ . .+..-|..||..| ++|-.|++++
T Consensus 5 ~~~C~~C~~~I~~--~--~~~a~~~~~H~~C---------F~C~~C~~~L 41 (70)
T 2d8z_A 5 SSGCVQCKKPITT--G--GVTYREQPWHKEC---------FVCTACRKQL 41 (70)
T ss_dssp CCBCSSSCCBCCS--S--EEESSSSEEETTT---------SBCSSSCCBC
T ss_pred CCCCcccCCeecc--c--eEEECccccCCCC---------CccCCCCCcC
Confidence 4679999987642 2 3456688899887 5699998876
No 261
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.32 E-value=60 Score=16.93 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=12.1
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2yth_A 12 PFQCEECGKRFTQNSH 27 (46)
T ss_dssp SBCCSSSCCCBSSHHH
T ss_pred CCCCCCCCcccCCHHH
Confidence 4789999999865443
No 262
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.31 E-value=57 Score=17.00 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=11.7
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2emg_A 12 PFICSECGKVFTHKT 26 (46)
T ss_dssp SCBCTTTCCBCSSHH
T ss_pred CEECCccCcccCCHH
Confidence 478999999986543
No 263
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.21 E-value=67 Score=16.67 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.7
Q ss_pred CCCCCCCCCCccchh
Q 031240 52 RYTCPVCSKSLWDMS 66 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~ 66 (163)
.+.|++|.+.+....
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eq1_A 12 PYKCNECGKAFRAHS 26 (46)
T ss_dssp CCCCTTTTCCCSSHH
T ss_pred CeECCcCChhhCCHH
Confidence 578999999986543
No 264
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.17 E-value=56 Score=19.57 Aligned_cols=9 Identities=33% Similarity=1.044 Sum_probs=4.4
Q ss_pred ceeeCCCCC
Q 031240 90 VWILCNDCG 98 (163)
Q Consensus 90 ~~i~C~dC~ 98 (163)
..+.|.+||
T Consensus 29 ge~vC~~CG 37 (58)
T 1dl6_A 29 GDMICPECG 37 (58)
T ss_dssp CCEECTTTC
T ss_pred CeEEeCCCC
Confidence 344455554
No 265
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.13 E-value=79 Score=16.30 Aligned_cols=16 Identities=38% Similarity=0.628 Sum_probs=11.8
Q ss_pred CCCCCCCCCCccchhH
Q 031240 52 RYTCPVCSKSLWDMSK 67 (163)
Q Consensus 52 ~~~CPiCr~~~~~~~~ 67 (163)
.+.|++|.+.+.....
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eov_A 12 PYKCSDCGKSFTWKSR 27 (46)
T ss_dssp SCBCSSSCCBCSSHHH
T ss_pred CccCCccChhhCCHHH
Confidence 4789999998865443
No 266
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.06 E-value=78 Score=18.49 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=11.5
Q ss_pred CCCCCC--CCCCccchhHH
Q 031240 52 RYTCPV--CSKSLWDMSKL 68 (163)
Q Consensus 52 ~~~CPi--Cr~~~~~~~~~ 68 (163)
.+.|++ |.+.+.....+
T Consensus 38 ~~~C~~~~C~k~f~~~~~L 56 (79)
T 2dlk_A 38 SFSCPEPACGKSFNFKKHL 56 (79)
T ss_dssp CEECSCTTTCCEESSHHHH
T ss_pred CeECCCCCCcCccCCHHHH
Confidence 467888 98887654433
Done!