BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031241
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFV
LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN
LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAKCSHGCV

High Scoring Gene Products

Symbol, full name Information P value
AT2G28605 protein from Arabidopsis thaliana 4.0e-26
PPD1
PsbP-Domain Protein1
protein from Arabidopsis thaliana 0.00049

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031241
        (163 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2828415 - symbol:AT2G28605 species:3702 "Arabi...   295  4.0e-26   1
TAIR|locus:2130295 - symbol:PPD1 "PsbP-Domain Protein1" s...    93  0.00049   1


>TAIR|locus:2828415 [details] [associations]
            symbol:AT2G28605 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0009654 "oxygen evolving complex" evidence=IEA]
            [GO:0015979 "photosynthesis" evidence=IEA] [GO:0019898 "extrinsic
            to membrane" evidence=IEA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009965 "leaf morphogenesis" evidence=RCA] [GO:0030154 "cell
            differentiation" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] InterPro:IPR002683
            Pfam:PF01789 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0019898 GO:GO:0005509 GO:GO:0009579 GO:GO:0015979
            GO:GO:0009543 EMBL:AC007171 Gene3D:3.40.1000.10 InterPro:IPR016123
            SUPFAM:SSF55724 GO:GO:0009654 EMBL:AY072442 EMBL:AY128884
            IPI:IPI00520894 RefSeq:NP_850123.1 UniGene:At.38598 HSSP:P18212
            ProteinModelPortal:Q8VY52 SMR:Q8VY52 STRING:Q8VY52 PaxDb:Q8VY52
            PRIDE:Q8VY52 EnsemblPlants:AT2G28605.1 GeneID:817409
            KEGG:ath:AT2G28605 TAIR:At2g28605 eggNOG:NOG300660
            HOGENOM:HOG000006006 InParanoid:Q8VY52 OMA:FEYKIDS PhylomeDB:Q8VY52
            ProtClustDB:CLSN2690972 Genevestigator:Q8VY52 Uniprot:Q8VY52
        Length = 232

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 63/97 (64%), Positives = 73/97 (75%)

Query:    61 LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN 120
             L  NG     +KA   EE  LQRYTDSN GFTLL PSS+ KV+KAGA  LFEE N G+NN
Sbjct:    58 LFFNGFLLD-NKAKSMEE--LQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNN 114

Query:   121 LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
             +GVVV+PVR+ SL +FG+PQFVADKLI AEKRK + K
Sbjct:   115 IGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTK 151


>TAIR|locus:2130295 [details] [associations]
            symbol:PPD1 "PsbP-Domain Protein1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009654 "oxygen evolving complex" evidence=ISS] [GO:0030095
            "chloroplast photosystem II" evidence=ISS] [GO:0009543 "chloroplast
            thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid lumen"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0048564 "photosystem I assembly" evidence=IMP]
            InterPro:IPR002683 Pfam:PF01789 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161541 GO:GO:0019898 GO:GO:0005509
            GO:GO:0009535 GO:GO:0031977 GO:GO:0015979 EMBL:Z97339 GO:GO:0009543
            Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
            EMBL:AY085014 EMBL:AK175561 IPI:IPI00526562 IPI:IPI00547165
            IPI:IPI00657053 PIR:G71419 RefSeq:NP_001031646.1 RefSeq:NP_567468.1
            RefSeq:NP_974555.1 UniGene:At.33171 ProteinModelPortal:O23403
            SMR:O23403 DIP:DIP-58590N STRING:O23403 PaxDb:O23403 PRIDE:O23403
            EnsemblPlants:AT4G15510.1 GeneID:827223 KEGG:ath:AT4G15510
            TAIR:At4g15510 eggNOG:NOG329161 HOGENOM:HOG000242253
            InParanoid:O23403 OMA:YPQNWIQ PhylomeDB:O23403 ProtClustDB:PLN00059
            BioCyc:MetaCyc:AT4G15510-MONOMER Genevestigator:O23403
            GO:GO:0009654 Uniprot:O23403
        Length = 287

 Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00049
 Identities = 27/95 (28%), Positives = 50/95 (52%)

Query:    61 LILNGLYPKLSKASLPEEME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANK 116
             L+++GL   +S+A+LP         + Y D+ +G++   P +WI+V  AGA + F +   
Sbjct:    87 LLMSGLI--VSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVV 144

Query:   117 GTNNLGVVVN-PV--RVASLGEFGTPQFVADKLIQ 148
                NL V  + P      SL + G+P+ V  ++++
Sbjct:   145 LDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLR 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       122   0.00091  102 3  11 22  0.37    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  122 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.02u 0.11s 11.13t   Elapsed:  00:00:00
  Total cpu time:  11.02u 0.11s 11.13t   Elapsed:  00:00:00
  Start:  Mon May 20 20:56:17 2013   End:  Mon May 20 20:56:17 2013

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