BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031241
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 3/112 (2%)
Query: 46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
S+ LSKR L LS L NG S+ E LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43 SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99
Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKVTAK 157
GA LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRK + K
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTK 151
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 61 LILNGLYPKLSKASLPEEME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANK 116
L+++GL +S+A+LP + Y D+ +G++ P +WI+V AGA + F +
Sbjct: 87 LLMSGLI--VSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVV 144
Query: 117 GTNNLGV---VVNPVRVASLGEFGTPQFVADKLIQ 148
NL V + SL + G+P+ V ++++
Sbjct: 145 LDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLR 179
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTP-QFV 142
+ +GF +L PS W +V+ G + +E+ T+N+GV+VNP S+ ++G+P QF+
Sbjct: 101 TGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFL 160
Query: 143 A 143
+
Sbjct: 161 S 161
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S EGF L+ P+ W + + G + +E+ T+NL V++NP ++ ++G+P+
Sbjct: 95 SGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPE 151
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 78 EMELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLG 134
+ + Q Y + +GF L PS W +V+ G + FE+ T+N+ V + P S+
Sbjct: 94 DTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSIT 151
Query: 135 EFGTPQ 140
+FG+P+
Sbjct: 152 DFGSPE 157
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 78 EMELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLG 134
+ + Q Y + +GF L PS W +V+ G + FE+ T+N+ V + P S+
Sbjct: 95 DTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSIT 152
Query: 135 EFGTPQ 140
+FG+P+
Sbjct: 153 DFGSPE 158
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF LL PS W + + G + +E+ T+NL V+V P S+ +FG+P+
Sbjct: 103 NGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPE 159
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S +GF L PS W + + G + +E+ +NL V++NP S+ +FG+P+
Sbjct: 99 SGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPE 155
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF LL P+ W +V+ G + +E+ T+N+ V V P S+ ++GTP+
Sbjct: 100 TGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPE 156
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S +GF + P+ W +V+ G + +E+ T+NL V+V P S+ ++G+P+
Sbjct: 96 SGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPE 152
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF + P+ W +++ G + FE+ T+NL V+V P S+ ++G+P+
Sbjct: 99 NGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPE 155
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 80 ELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
E +YT GF L P+ W +V+ G + +E+ T+NL V+V P ++ ++
Sbjct: 94 EFSQYT--GPGFKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDY 151
Query: 137 GTPQ 140
G P+
Sbjct: 152 GAPE 155
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +V+ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 94 NGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF + P+ W +V+ G + +E+ T+NL V+V P S+ ++G+P+
Sbjct: 53 NGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPE 109
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +++ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 96 NGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPE 152
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +V+ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 104 NGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPE 160
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF LL P+ W + + G + +E+ T+N+ V+V S+ ++G+P+
Sbjct: 95 NGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPE 151
>sp|Q6C161|EIF3A_YARLI Eukaryotic translation initiation factor 3 subunit A OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF32 PE=3 SV=1
Length = 955
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 100 IKVDKAGATVLFEEANKGTNNLGVVVNPVRV--ASLGEFGTPQFVADKLIQAEKRK 153
IK+D +VLFEE T + + P+ + L G VAD L AE R+
Sbjct: 482 IKIDHDQRSVLFEEVRAATGSASLQDTPIEIVRTQLSRLGRTLSVADPLNSAEARE 537
>sp|Q12IK4|DTD_SHEDO D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=dtd PE=3 SV=1
Length = 145
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 18 NHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILN---GLYPKLSKAS 74
N M + +IS+ + + + LS + LC+S F L + GL P SKA+
Sbjct: 38 NIEAMEKLATKVISYRIFNDENGKMNLSLKQAGGALLCVSQFTLAADTGRGLRPSFSKAA 97
Query: 75 LPEE 78
PE+
Sbjct: 98 TPEQ 101
>sp|Q8JG64|PDIA3_CHICK Protein disulfide-isomerase A3 OS=Gallus gallus GN=PDIA3 PE=2 SV=1
Length = 505
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 8 ALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLY 67
A I SH P S + S++ F K + R + + S F+ N L
Sbjct: 119 ADGIVSHLKKQAGPASVALSSVADFEKFIGDKDASVVGFFRDASGD-AYSEFMKAANNLR 177
Query: 68 PKLSKASLPEEMELQRYTDSNEGFTLLRPS 97
A EE +Q+Y + EG L RPS
Sbjct: 178 DNYRFAHTSEEQLVQKYEEDGEGVVLYRPS 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,001,970
Number of Sequences: 539616
Number of extensions: 2060644
Number of successful extensions: 5483
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5470
Number of HSP's gapped (non-prelim): 23
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)