Query 031241
Match_columns 163
No_of_seqs 126 out of 178
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 8.5E-30 1.8E-34 218.1 10.8 115 37-152 64-183 (286)
2 PLN00042 photosystem II oxygen 99.9 1.6E-27 3.5E-32 203.2 10.4 150 1-152 1-168 (260)
3 PF01789 PsbP: PsbP; InterPro 99.9 3E-22 6.4E-27 159.2 6.4 78 78-155 20-98 (175)
4 PLN00067 PsbP domain-containin 99.7 1.2E-17 2.7E-22 142.8 9.3 102 47-152 41-187 (263)
5 PLN00066 PsbP domain-containin 99.7 3.1E-16 6.7E-21 134.4 10.3 101 49-150 45-187 (262)
6 PLN03152 hypothetical protein; 99.0 1.1E-09 2.4E-14 92.8 7.2 72 75-149 72-168 (241)
7 PF12712 DUF3805: Domain of un 90.0 0.37 8.1E-06 38.9 3.5 45 82-126 2-46 (153)
8 PF08006 DUF1700: Protein of u 70.3 2.7 5.9E-05 33.4 1.6 21 131-151 45-65 (181)
9 PF07174 FAP: Fibronectin-atta 51.4 22 0.00048 31.7 4.0 31 82-112 110-144 (297)
10 TIGR02811 formate_TAT formate 49.3 13 0.00029 25.9 1.9 16 46-61 6-21 (66)
11 COG1797 CobB Cobyrinic acid a, 46.9 9.5 0.00021 35.8 1.1 69 80-155 245-315 (451)
12 PF05984 Cytomega_UL20A: Cytom 41.7 22 0.00048 26.7 2.2 20 49-68 1-20 (100)
13 PF10518 TAT_signal: TAT (twin 40.3 40 0.00086 19.3 2.7 19 49-67 2-20 (26)
14 COG4709 Predicted membrane pro 35.7 20 0.00043 30.3 1.2 19 131-149 45-63 (195)
15 PRK10943 cold shock-like prote 30.5 58 0.0013 22.4 2.7 28 79-112 5-32 (69)
16 PF12559 Inhibitor_I10: Serine 25.5 29 0.00062 23.8 0.4 12 90-101 44-55 (56)
17 cd04458 CSP_CDS Cold-Shock Pro 25.3 91 0.002 20.4 2.9 24 84-113 7-30 (65)
18 PRK09890 cold shock protein Cs 24.8 81 0.0018 21.7 2.6 28 79-112 6-33 (70)
19 PRK15464 cold shock-like prote 24.1 80 0.0017 22.0 2.5 27 80-112 7-33 (70)
20 PF06570 DUF1129: Protein of u 23.9 43 0.00092 27.3 1.3 21 136-156 52-72 (206)
21 TIGR03741 PRTRC_E PRTRC system 23.3 1.9E+02 0.0042 21.9 4.6 31 119-149 24-63 (104)
22 cd03130 GATase1_CobB Type 1 gl 22.8 34 0.00074 27.6 0.5 42 88-129 6-49 (198)
23 PRK09937 stationary phase/star 22.5 1.1E+02 0.0024 21.5 3.0 27 80-112 4-30 (74)
24 PF12318 FAD-SLDH: Membrane bo 22.4 75 0.0016 25.6 2.4 8 48-55 1-8 (168)
25 PF14326 DUF4384: Domain of un 22.1 2.6E+02 0.0055 19.4 4.8 34 81-114 22-57 (83)
26 TIGR02381 cspD cold shock doma 22.1 1.1E+02 0.0025 20.7 2.9 27 80-112 4-30 (68)
27 COG3355 Predicted transcriptio 20.9 40 0.00088 26.5 0.5 18 87-104 80-98 (126)
28 PRK14998 cold shock-like prote 20.4 1.3E+02 0.0028 21.0 3.0 27 80-112 4-30 (73)
29 PRK15463 cold shock-like prote 20.4 1.2E+02 0.0026 21.0 2.8 27 80-112 7-33 (70)
30 PRK09507 cspE cold shock prote 20.3 1.2E+02 0.0025 20.8 2.7 27 80-112 6-32 (69)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=99.96 E-value=8.5e-30 Score=218.15 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=92.9
Q ss_pred cchhhHHHhhhcchhhHHHHH--HHHHHHhhhCCCCCCCCcccccCceeeecCCCceEEecCCCCccccccCCcEEeecC
Q 031241 37 KKKTVVELSSLRLSKRELCLS--SFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEA 114 (163)
Q Consensus 37 ~~~~~~~~~~~~~~RR~lll~--v~~~~~t~~ll~~s~~alA~~~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~ 114 (163)
.+.|..+....+...||.++. +++..+..+ ....+.++|+..||++|+|+.|||+|+||.||++|++.|+||+|||+
T Consensus 64 ~~~~~~~~~~~~~~~rr~~~~~~l~~~~~~~s-~~~~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~ 142 (286)
T PLN00059 64 AINCLTDAKQVCAVGRRKSMMMGLLMSGLIVS-EANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 142 (286)
T ss_pred eeecccchhhhhhhhhhhhhHHHHHHHHHHHH-hhcCchhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCceEEecc
Confidence 345544555556666666643 333333333 33344578888899999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeeCC---CCCcccCCCHHHHHHHHHHHHHh
Q 031241 115 NKGTNNLGVVVNPVR---VASLGEFGTPQFVADKLIQAEKR 152 (163)
Q Consensus 115 ~~~~eNVsV~VsPv~---~~sI~dfGsPeeVge~L~k~e~~ 152 (163)
++.+|||||+|+|++ +++|+|||+|+||||+|++++.+
T Consensus 143 Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa 183 (286)
T PLN00059 143 VVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLT 183 (286)
T ss_pred CccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhc
Confidence 999999999999885 89999999999999999999976
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=99.95 E-value=1.6e-27 Score=203.19 Aligned_cols=150 Identities=23% Similarity=0.291 Sum_probs=97.3
Q ss_pred ChhhhhhhhcccCCCcCCCCCCCCCCCccccccccCcchh-hHHHhhhcchhhHHHHHHHHHHHhhhCCCCCCCCcccc-
Q 031241 1 MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKT-VVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE- 78 (163)
Q Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~RR~lll~v~~~~~t~~ll~~s~~alA~~- 78 (163)
||..+|+.--....-.-.+...++++.......-|..+.| .+.+.....+||++|+.++..++.+.-++.++.+++++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~a 80 (260)
T PLN00042 1 MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQEEDNSAVSRRAALALLAGAAAAGAKVSPANAAYGESA 80 (260)
T ss_pred CcchhhhhhcccccchhhhcccccccccccCCCCCcceeeeccccccccccHHHHHHHHHHHHHhhcccCchhhhhcchh
Confidence 8888887533221111111111112222233344555566 22333455677776654432222222232222344332
Q ss_pred ---------cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----H
Q 031241 79 ---------MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----V 142 (163)
Q Consensus 79 ---------~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~sI~dfGsPee----V 142 (163)
.||.+|. +|||+|+||++|++++ .+|+|++|||+++++|||+|+|+|+++++|+|||+||| |
T Consensus 81 nvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~v 158 (260)
T PLN00042 81 NVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKV 158 (260)
T ss_pred hccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHHHHH
Confidence 6999996 5999999999999776 56999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHh
Q 031241 143 ADKLIQAEKR 152 (163)
Q Consensus 143 ge~L~k~e~~ 152 (163)
+++|.++.-.
T Consensus 159 gylL~kq~~a 168 (260)
T PLN00042 159 SYLLGKQAYS 168 (260)
T ss_pred HHHHHhhhcc
Confidence 8888886543
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=99.86 E-value=3e-22 Score=159.25 Aligned_cols=78 Identities=38% Similarity=0.694 Sum_probs=70.9
Q ss_pred ccCceeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCC-CcccCCCHHHHHHHHHHHHHhhcC
Q 031241 78 EMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVA-SLGEFGTPQFVADKLIQAEKRKVT 155 (163)
Q Consensus 78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~-sI~dfGsPeeVge~L~k~e~~Kes 155 (163)
..||++|.|+.+||+|.||.||+++++.|+|++|+|+++.++||+|+|+|+..+ +|+|||+|+|||++|++++.+++.
T Consensus 20 ~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~~~~~~~~ 98 (175)
T PF01789_consen 20 STGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLNGELASPG 98 (175)
T ss_dssp -SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHHHCCCHCT
T ss_pred CCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhhhhccccc
Confidence 379999999999999999999999999999999999999999999999999855 999999999999999998876654
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.73 E-value=1.2e-17 Score=142.80 Aligned_cols=102 Identities=21% Similarity=0.337 Sum_probs=76.2
Q ss_pred hcchhhHHHHHHHHHHHhhhCCCCCCCCcccc-------------cCceeee-----------cCCCceEEecCCCCccc
Q 031241 47 LRLSKRELCLSSFVLILNGLYPKLSKASLPEE-------------MELQRYT-----------DSNEGFTLLRPSSWIKV 102 (163)
Q Consensus 47 ~~~~RR~lll~v~~~~~t~~ll~~s~~alA~~-------------~gf~~y~-----------D~~dGYsflyP~gW~~v 102 (163)
....||++|+|+.+..+... +... .+.|.| .||--|. +...||+|+||.||+++
T Consensus 41 ~~~~rr~~~~~~~~~~~~~~-~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v 118 (263)
T PLN00067 41 VVIHRRELLLGLALAPLILI-APEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQT 118 (263)
T ss_pred chhHHHHHHhhhhhhhhhhc-cCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCc
Confidence 44689999999876533322 2211 222221 3666664 23679999999999999
Q ss_pred ccc----C-----------CcEEeecCCCCCceeEEEEeeC------CCCCcccCCCHHHHHHHHHHHHHh
Q 031241 103 DKA----G-----------ATVLFEEANKGTNNLGVVVNPV------RVASLGEFGTPQFVADKLIQAEKR 152 (163)
Q Consensus 103 ~~~----G-----------~dv~F~D~~~~~eNVsV~VsPv------~~~sI~dfGsPeeVge~L~k~e~~ 152 (163)
+++ | +|++|+|+. ++||+|+|+|+ ++++|+|||+|++|+++|.+....
T Consensus 119 ~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g 187 (263)
T PLN00067 119 RVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG 187 (263)
T ss_pred cccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc
Confidence 986 4 899999955 77999999998 468999999999999999877654
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.67 E-value=3.1e-16 Score=134.43 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=78.1
Q ss_pred chhhHHHHHHHHHHHhhhCCCCCCCCcc----------------cccCceeeecC-------------CCceEEecCCCC
Q 031241 49 LSKRELCLSSFVLILNGLYPKLSKASLP----------------EEMELQRYTDS-------------NEGFTLLRPSSW 99 (163)
Q Consensus 49 ~~RR~lll~v~~~~~t~~ll~~s~~alA----------------~~~gf~~y~D~-------------~dGYsflyP~gW 99 (163)
++||.+|.+.++++.... ++.+..++| .+.||+.|..+ ...|+|+||.||
T Consensus 45 ~~rr~~~~s~~~~~~~~~-~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW 123 (262)
T PLN00066 45 VSRRSALASGAAAASSAV-LAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGW 123 (262)
T ss_pred hhHHHHHHHHHHHHhhhh-hcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCC
Confidence 589999987765522211 222222322 23588999765 267999999999
Q ss_pred cccccc-----CCcEEeecCCCCCceeEEEEeeC--------CCCCcccCCCHHHHHHHHHHHH
Q 031241 100 IKVDKA-----GATVLFEEANKGTNNLGVVVNPV--------RVASLGEFGTPQFVADKLIQAE 150 (163)
Q Consensus 100 ~~v~~~-----G~dv~F~D~~~~~eNVsV~VsPv--------~~~sI~dfGsPeeVge~L~k~e 150 (163)
.++.++ |+++.|++.++.++||+|+|+|+ ++++|+|||+||+|++.|+++.
T Consensus 124 ~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v 187 (262)
T PLN00066 124 EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPEL 187 (262)
T ss_pred eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHh
Confidence 999986 77788888889999999999998 5899999999999999998763
No 6
>PLN03152 hypothetical protein; Provisional
Probab=98.99 E-value=1.1e-09 Score=92.77 Aligned_cols=72 Identities=17% Similarity=0.380 Sum_probs=54.8
Q ss_pred cccccCceeeecCCCceEEecCCCCcccccc-----------------CCcEEeecCCCCCceeEEEEeeC--------C
Q 031241 75 LPEEMELQRYTDSNEGFTLLRPSSWIKVDKA-----------------GATVLFEEANKGTNNLGVVVNPV--------R 129 (163)
Q Consensus 75 lA~~~gf~~y~D~~dGYsflyP~gW~~v~~~-----------------G~dv~F~D~~~~~eNVsV~VsPv--------~ 129 (163)
+|++..+-.| .++||++-||.++..+-++ --.++|..+ |.+|||||+|+|+ +
T Consensus 72 ~~nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle 148 (241)
T PLN03152 72 IANTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLE 148 (241)
T ss_pred eecchhhhhh--hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccc
Confidence 3444444444 3899999999999876532 234556555 4899999999997 5
Q ss_pred CCCcccCCCHHHHHHHHHHH
Q 031241 130 VASLGEFGTPQFVADKLIQA 149 (163)
Q Consensus 130 ~~sI~dfGsPeeVge~L~k~ 149 (163)
.++|+|||+|+|||+.|+-.
T Consensus 149 ~kDLtDLGsp~EVgkv~vP~ 168 (241)
T PLN03152 149 AKDITDLGSLKEAAKIFVPG 168 (241)
T ss_pred cCChhHcCCHHHHHHhhCCC
Confidence 89999999999999888744
No 7
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=89.97 E-value=0.37 Score=38.90 Aligned_cols=45 Identities=16% Similarity=0.426 Sum_probs=28.0
Q ss_pred eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEe
Q 031241 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVN 126 (163)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~Vs 126 (163)
.-|..++.=|++.||.+|.++.......+|=||..=+-|..+..-
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISay 46 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAY 46 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEE
T ss_pred CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEE
Confidence 467888888999999999999977778889999999999965443
No 8
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=70.29 E-value=2.7 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=17.8
Q ss_pred CCcccCCCHHHHHHHHHHHHH
Q 031241 131 ASLGEFGTPQFVADKLIQAEK 151 (163)
Q Consensus 131 ~sI~dfGsPeeVge~L~k~e~ 151 (163)
+=+++||+|+|+|..++.+..
T Consensus 45 eii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 45 EIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHcCCHHHHHHHHHHhhh
Confidence 447899999999999997665
No 9
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=51.41 E-value=22 Score=31.68 Aligned_cols=31 Identities=26% Similarity=0.691 Sum_probs=24.5
Q ss_pred eeeecCCCceEEecCCCCcccccc----CCcEEee
Q 031241 82 QRYTDSNEGFTLLRPSSWIKVDKA----GATVLFE 112 (163)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~----G~dv~F~ 112 (163)
-++.|...||+|+.|.||.+.+.. |..+.=+
T Consensus 110 grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~ 144 (297)
T PF07174_consen 110 GRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSK 144 (297)
T ss_pred ccccccccceEEeccCCccccccceeecceeeecc
Confidence 466778999999999999988843 6666654
No 10
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=49.29 E-value=13 Score=25.86 Aligned_cols=16 Identities=25% Similarity=0.025 Sum_probs=11.8
Q ss_pred hhcchhhHHHHHHHHH
Q 031241 46 SLRLSKRELCLSSFVL 61 (163)
Q Consensus 46 ~~~~~RR~lll~v~~~ 61 (163)
+...+||++|.++++.
T Consensus 6 ~~~~sRR~Flk~lg~~ 21 (66)
T TIGR02811 6 KADPSRRDLLKGLGVG 21 (66)
T ss_pred cCCccHHHHHHHHHHH
Confidence 4567899999877653
No 11
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=46.91 E-value=9.5 Score=35.83 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=45.9
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCCCcccC--CCHHHHHHHHHHHHHhhcC
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF--GTPQFVADKLIQAEKRKVT 155 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~sI~df--GsPeeVge~L~k~e~~Kes 155 (163)
|.+-=+-.+.-|.|+||.....-+..|+.++|=+|-.- +-| | +.-+.==+ |=||-.++.|-+++..+++
T Consensus 245 ~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D-~~l-----P-~~~D~vYlgGGYPElfA~~L~~n~~~~~~ 315 (451)
T COG1797 245 GVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLAD-EEL-----P-PDVDAVYLGGGYPELFAEELSANESMRRA 315 (451)
T ss_pred CceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCC-CCC-----C-CCCCEEEeCCCChHHHHHHHhhCHHHHHH
Confidence 34444445788999999999999999999988666531 111 0 01111113 4499999999999876654
No 12
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=41.68 E-value=22 Score=26.74 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHHHHhhhCC
Q 031241 49 LSKRELCLSSFVLILNGLYP 68 (163)
Q Consensus 49 ~~RR~lll~v~~~~~t~~ll 68 (163)
+.||-++|++++..++++|.
T Consensus 1 MaRRlwiLslLAVtLtVALA 20 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALA 20 (100)
T ss_pred CchhhHHHHHHHHHHHHHhh
Confidence 46899999999988888865
No 13
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=40.33 E-value=40 Score=19.33 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHhhhC
Q 031241 49 LSKRELCLSSFVLILNGLY 67 (163)
Q Consensus 49 ~~RR~lll~v~~~~~t~~l 67 (163)
.+||+.|-+.+..++...+
T Consensus 2 ~sRR~fLk~~~a~~a~~~~ 20 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAAL 20 (26)
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 5788888877665555443
No 14
>COG4709 Predicted membrane protein [Function unknown]
Probab=35.70 E-value=20 Score=30.31 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=13.6
Q ss_pred CCcccCCCHHHHHHHHHHH
Q 031241 131 ASLGEFGTPQFVADKLIQA 149 (163)
Q Consensus 131 ~sI~dfGsPeeVge~L~k~ 149 (163)
+=+.|||+|+|+|..+..+
T Consensus 45 EI~~~LG~P~eiA~ei~s~ 63 (195)
T COG4709 45 EIAKDLGDPKEIAAEILSE 63 (195)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3478999999977554433
No 15
>PRK10943 cold shock-like protein CspC; Provisional
Probab=30.53 E-value=58 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.436 Sum_probs=20.1
Q ss_pred cCceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 79 MELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 79 ~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
.|--.+-|...||-|+-|.+ .|.||+||
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~------g~~dvFvH 32 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD------GSKDVFVH 32 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC------CCeeEEEE
Confidence 35555667789999999864 45677765
No 16
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=25.49 E-value=29 Score=23.85 Aligned_cols=12 Identities=42% Similarity=0.515 Sum_probs=4.0
Q ss_pred ceEEecCCCCcc
Q 031241 90 GFTLLRPSSWIK 101 (163)
Q Consensus 90 GYsflyP~gW~~ 101 (163)
.+++.||++|.+
T Consensus 44 ~~TlKyPSD~ee 55 (56)
T PF12559_consen 44 IQTLKYPSDWEE 55 (56)
T ss_dssp -----SS-SS--
T ss_pred CcceeCCCcccc
Confidence 479999999975
No 17
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=25.26 E-value=91 Score=20.36 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=17.8
Q ss_pred eecCCCceEEecCCCCccccccCCcEEeec
Q 031241 84 YTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (163)
Q Consensus 84 y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (163)
.-|...||-|+-|.+ .|.|++||-
T Consensus 7 ~~~~~kGfGFI~~~~------~g~diffh~ 30 (65)
T cd04458 7 WFDDEKGFGFITPDD------GGEDVFVHI 30 (65)
T ss_pred EEECCCCeEEEecCC------CCcCEEEEh
Confidence 446679999998876 567777763
No 18
>PRK09890 cold shock protein CspG; Provisional
Probab=24.77 E-value=81 Score=21.71 Aligned_cols=28 Identities=18% Similarity=0.530 Sum_probs=20.9
Q ss_pred cCceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 79 MELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 79 ~gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
.|-..+-|...||-|+-|.+ .|.||+||
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~------g~~dvFvH 33 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD------GSKDVFVH 33 (70)
T ss_pred eEEEEEEECCCCcEEEecCC------CCceEEEE
Confidence 36566667889999999973 45678777
No 19
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.09 E-value=80 Score=21.99 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=19.0
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|--.+-|...||-|+-|.+ .|.||++|
T Consensus 7 G~Vk~fn~~KGfGFI~~~~------g~~DvFvH 33 (70)
T PRK15464 7 GIVKTFDRKSGKGFIIPSD------GRKEVQVH 33 (70)
T ss_pred EEEEEEECCCCeEEEccCC------CCccEEEE
Confidence 4445557789999998875 35666654
No 20
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.92 E-value=43 Score=27.30 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCc
Q 031241 136 FGTPQFVADKLIQAEKRKVTA 156 (163)
Q Consensus 136 fGsPeeVge~L~k~e~~Kest 156 (163)
||+|+|-++.++++..++..+
T Consensus 52 fG~P~~~a~eli~~~~k~~~~ 72 (206)
T PF06570_consen 52 FGDPKEYADELIKPLPKPKKK 72 (206)
T ss_pred cCCHHHHHHHHhccccCCccc
Confidence 899999999999987655443
No 21
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=23.34 E-value=1.9e+02 Score=21.90 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=20.9
Q ss_pred ceeEEEEeeCCCCCc--ccC-------CCHHHHHHHHHHH
Q 031241 119 NNLGVVVNPVRVASL--GEF-------GTPQFVADKLIQA 149 (163)
Q Consensus 119 eNVsV~VsPv~~~sI--~df-------GsPeeVge~L~k~ 149 (163)
+++.|+|.|..+... ..+ |+|+|.-+.+..+
T Consensus 24 d~l~V~v~P~~~~~~~d~~l~~Pl~L~gTp~ELD~gF~~a 63 (104)
T TIGR03741 24 DKLTVTVTPTPKSGAKDGALTKPLVLTGTPAELDAGFAGA 63 (104)
T ss_pred CEEEEEEeeccccccccccccCCeeeccCHHHHHHHHHHH
Confidence 389999999842222 344 8999966666543
No 22
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=22.85 E-value=34 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCceEEecCCCCccccccCCcEEeecCC--CCCceeEEEEeeCC
Q 031241 88 NEGFTLLRPSSWIKVDKAGATVLFEEAN--KGTNNLGVVVNPVR 129 (163)
Q Consensus 88 ~dGYsflyP~gW~~v~~~G~dv~F~D~~--~~~eNVsV~VsPv~ 129 (163)
+.-|.|+||......+..|+++.+-++. +...+...+|.|=.
T Consensus 6 d~aF~f~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG 49 (198)
T cd03130 6 DEAFNFYYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGG 49 (198)
T ss_pred cCccccccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCC
Confidence 5779999999999999999999987764 33334666676654
No 23
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=22.48 E-value=1.1e+02 Score=21.47 Aligned_cols=27 Identities=15% Similarity=0.477 Sum_probs=19.2
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|--.+-|...||-|+-|.+ .|.||++|
T Consensus 4 G~Vkwfn~~KGfGFI~~~~------gg~dVFvH 30 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEG------GGEDIFAH 30 (74)
T ss_pred eEEEEEeCCCCeEEEeeCC------CCccEEEE
Confidence 4445557789999998863 45677766
No 24
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=22.35 E-value=75 Score=25.60 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=6.6
Q ss_pred cchhhHHH
Q 031241 48 RLSKRELC 55 (163)
Q Consensus 48 ~~~RR~ll 55 (163)
+.+||++|
T Consensus 1 g~sRR~~L 8 (168)
T PF12318_consen 1 GLSRRRLL 8 (168)
T ss_pred CCcHHHHH
Confidence 46899999
No 25
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=22.13 E-value=2.6e+02 Score=19.36 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=24.8
Q ss_pred ceeeecCCCceEEecCCCCccccc--cCCcEEeecC
Q 031241 81 LQRYTDSNEGFTLLRPSSWIKVDK--AGATVLFEEA 114 (163)
Q Consensus 81 f~~y~D~~dGYsflyP~gW~~v~~--~G~dv~F~D~ 114 (163)
+--+.|+++..+.+||+.|...+. +|....|.|.
T Consensus 22 ~l~~~~~~G~v~~L~Pn~~~~~~~v~ag~~~~iP~~ 57 (83)
T PF14326_consen 22 YLFYIDADGKVTLLFPNRYQPDNFVKAGQTYTIPDP 57 (83)
T ss_pred EEEEECCCCCEEEEecCccccCceEcCCceEEcCCC
Confidence 345678888899999999888763 3666666643
No 26
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.11 E-value=1.1e+02 Score=20.75 Aligned_cols=27 Identities=11% Similarity=0.449 Sum_probs=19.3
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|-..+-|...||-|+-|.+ .|.|++||
T Consensus 4 G~Vk~f~~~kGfGFI~~~~------g~~dvfvH 30 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICPEG------VDGDIFAH 30 (68)
T ss_pred eEEEEEeCCCCeEEEecCC------CCccEEEE
Confidence 4455667889999998874 35667665
No 27
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=20.91 E-value=40 Score=26.47 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCceEEec-CCCCccccc
Q 031241 87 SNEGFTLLR-PSSWIKVDK 104 (163)
Q Consensus 87 ~~dGYsfly-P~gW~~v~~ 104 (163)
.+.||.|+| |..|.+.+.
T Consensus 80 ~~Ggy~yiY~~i~~ee~k~ 98 (126)
T COG3355 80 KGGGYYYLYKPIDPEEIKK 98 (126)
T ss_pred CCCceeEEEecCCHHHHHH
Confidence 689999999 999998773
No 28
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.38 E-value=1.3e+02 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.477 Sum_probs=19.3
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|-..+-|...||-|+-|.+ .|.||++|
T Consensus 4 G~Vkwfn~~kGfGFI~~~~------g~~dVFvH 30 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEG------GGEDIFAH 30 (73)
T ss_pred eEEEEEeCCCceEEEecCC------CCccEEEE
Confidence 4444557789999999875 45677766
No 29
>PRK15463 cold shock-like protein CspF; Provisional
Probab=20.38 E-value=1.2e+02 Score=20.97 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=19.8
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|--.+-|...||-|+-|.+ .|.||++|
T Consensus 7 G~Vk~fn~~kGfGFI~~~~------g~~DvFvH 33 (70)
T PRK15463 7 GIVKTFDGKSGKGLITPSD------GRKDVQVH 33 (70)
T ss_pred EEEEEEeCCCceEEEecCC------CCccEEEE
Confidence 5455667789999999874 45677766
No 30
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.32 E-value=1.2e+02 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=19.7
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|--.+-|...||-|+-|.+ .|.|++||
T Consensus 6 G~Vk~f~~~kGyGFI~~~~------g~~dvfvH 32 (69)
T PRK09507 6 GNVKWFNESKGFGFITPED------GSKDVFVH 32 (69)
T ss_pred eEEEEEeCCCCcEEEecCC------CCeeEEEE
Confidence 5445557789999998874 45788876
Done!