Query 031241
Match_columns 163
No_of_seqs 126 out of 178
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 99.7 3.9E-22 1.3E-26 157.0 0.0 75 78-152 11-90 (170)
2 2xb3_A PSBP protein; photosynt 99.8 5E-20 1.7E-24 143.3 7.8 75 78-152 5-81 (165)
3 1v2b_A 23-kDa polypeptide of p 99.8 6.9E-20 2.4E-24 146.5 3.6 72 79-152 7-85 (177)
4 3hlz_A Uncharacterized protein 85.8 0.85 2.9E-05 38.6 4.5 46 82-127 5-50 (269)
5 1tu1_A Hypothetical protein PA 57.5 52 0.0018 24.2 7.7 61 81-151 3-65 (148)
6 1g6p_A Cold shock protein TMCS 23.4 37 0.0013 22.0 1.7 23 84-113 7-29 (66)
7 3cam_A Cold-shock domain famil 21.5 59 0.002 21.2 2.4 25 82-112 6-30 (67)
8 3a0j_A Cold shock protein; OB- 21.4 72 0.0025 21.0 2.9 17 82-98 6-22 (73)
9 3i2z_B RNA chaperone, negative 18.9 81 0.0028 20.7 2.7 27 80-112 8-34 (71)
10 1c9o_A CSPB, cold-shock protei 18.1 54 0.0018 21.2 1.6 24 83-113 7-30 (66)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.72 E-value=3.9e-22 Score=157.00 Aligned_cols=75 Identities=29% Similarity=0.605 Sum_probs=70.8
Q ss_pred ccCceeeecCCCceEEecCCCCcccccc----CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHHh
Q 031241 78 EMELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR 152 (163)
Q Consensus 78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~----G~dv~F~D~~~~~eNVsV~VsPv~~-~sI~dfGsPeeVge~L~k~e~~ 152 (163)
..||++|+|+.|||+|+||++|++++++ |+|++|+|+++.++||+|+|+|+++ ++|+|||+|+|||++|++++.+
T Consensus 11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~ 90 (170)
T 2lnj_A 11 IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVND 90 (170)
Confidence 4699999999999999999999999988 9999999999999999999999996 9999999999999999998554
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.80 E-value=5e-20 Score=143.27 Aligned_cols=75 Identities=36% Similarity=0.616 Sum_probs=70.3
Q ss_pred ccCceeeecCCCceEEecCCCCcccccc-CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHHh
Q 031241 78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR 152 (163)
Q Consensus 78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~-G~dv~F~D~~~~~eNVsV~VsPv~~-~sI~dfGsPeeVge~L~k~e~~ 152 (163)
..||++|.|+.+||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++||++|+++..+
T Consensus 5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~ 81 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIA 81 (165)
T ss_dssp -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTS
T ss_pred CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhc
Confidence 3699999999999999999999999998 9999999999999999999999985 9999999999999999997654
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.77 E-value=6.9e-20 Score=146.53 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=61.8
Q ss_pred cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----HHHHHHHHHH
Q 031241 79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQAEK 151 (163)
Q Consensus 79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~sI~dfGsPee----Vge~L~k~e~ 151 (163)
.||++|. +|||+|+||.+|++++ .+|+|++|+|+++.++||+|+|+|+++++|+|||+|++ ||++|+++..
T Consensus 7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~ 84 (177)
T 1v2b_A 7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY 84 (177)
T ss_dssp CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhh
Confidence 6999997 8999999999999766 45999999999999999999999999999999999999 6888887755
Q ss_pred h
Q 031241 152 R 152 (163)
Q Consensus 152 ~ 152 (163)
.
T Consensus 85 ~ 85 (177)
T 1v2b_A 85 S 85 (177)
T ss_dssp -
T ss_pred c
Confidence 4
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.75 E-value=0.85 Score=38.56 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=39.0
Q ss_pred eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEee
Q 031241 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNP 127 (163)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsP 127 (163)
.-|..++.=|++.||.+|+++.....--+|-+|..=+-|..+.--.
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk 50 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK 50 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc
Confidence 4688889999999999999999887888888999999998655443
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=57.54 E-value=52 Score=24.16 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=34.2
Q ss_pred ceeeecCCCceEEecCCCCccccccCCcEEeecCCCCC--ceeEEEEeeCCCCCcccCCCHHHHHHHHHHHHH
Q 031241 81 LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGT--NNLGVVVNPVRVASLGEFGTPQFVADKLIQAEK 151 (163)
Q Consensus 81 f~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~--eNVsV~VsPv~~~sI~dfGsPeeVge~L~k~e~ 151 (163)
+..|. .+.++|..|.+|+.- ...|++-....+. -||.|...+... =.+.++..++-+++-+
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~---t~nv~~~~~~~~~g~~~lvIsR~~~~~-----~~~l~~~~~~q~~~l~ 65 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQ---SINIFKLPASGPAREASFVISRDASQG-----DAPFADYVARQLENAE 65 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEEC---CBEEEEECCBTTBCCEEEEEEEECCCT-----TSCHHHHHHHHHHHHH
T ss_pred CceEE--ECCEEEeCCCCcEee---eEEEEEcCCCCCCCceEEEEEeccCCC-----CCCHHHHHHHHHHHHH
Confidence 45674 789999999999932 3455554433222 355555544442 1345555555544443
No 6
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=23.38 E-value=37 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=16.2
Q ss_pred eecCCCceEEecCCCCccccccCCcEEeec
Q 031241 84 YTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (163)
Q Consensus 84 y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (163)
.-|...||-|+-|.+ |.||+||-
T Consensus 7 ~fn~~kGfGFI~~~~-------g~dvFvH~ 29 (66)
T 1g6p_A 7 WFDSKKGYGFITKDE-------GGDVFVHW 29 (66)
T ss_dssp EEETTTTEEEEEETT-------SCBCBBCS
T ss_pred EEECCCCEEEEecCC-------CceEEEEh
Confidence 446789999999874 45666653
No 7
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=21.47 E-value=59 Score=21.18 Aligned_cols=25 Identities=16% Similarity=0.549 Sum_probs=17.4
Q ss_pred eeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
-..-|...||-|+-|.+ .|.||+||
T Consensus 6 Vk~fn~~kGfGFI~~~~------gg~dvFvH 30 (67)
T 3cam_A 6 VKWFNDAKGFGFITPDE------GGEDLFAH 30 (67)
T ss_dssp EEEEETTTTEEEEEETT------SCCCEEEE
T ss_pred EEEEECCCCeEEEecCC------CCccEEEE
Confidence 34456789999999864 35666665
No 8
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.38 E-value=72 Score=21.04 Aligned_cols=17 Identities=6% Similarity=0.472 Sum_probs=12.7
Q ss_pred eeeecCCCceEEecCCC
Q 031241 82 QRYTDSNEGFTLLRPSS 98 (163)
Q Consensus 82 ~~y~D~~dGYsflyP~g 98 (163)
-..-|...||-|+-|.+
T Consensus 6 Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 6 VKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEEECCCCEEEEecCC
Confidence 34456789999999874
No 9
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=18.87 E-value=81 Score=20.68 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=19.1
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 031241 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (163)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (163)
|--..-|...||-|+-|.+ .|.||+||
T Consensus 8 G~Vk~fn~~kGfGFI~~~~------g~~dvFvH 34 (71)
T 3i2z_B 8 GNVKWFNESKGFGFITPED------GSKDVFVH 34 (71)
T ss_dssp EEEEEEETTTTEEEEEETT------CCCCEEEE
T ss_pred EEEEEEECCCCcEEEecCC------CCccEEEE
Confidence 5445556789999998854 34677776
No 10
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=18.13 E-value=54 Score=21.16 Aligned_cols=24 Identities=13% Similarity=0.475 Sum_probs=16.4
Q ss_pred eeecCCCceEEecCCCCccccccCCcEEeec
Q 031241 83 RYTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (163)
Q Consensus 83 ~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (163)
..-|...||-|+-|.+ |.||+||-
T Consensus 7 k~fn~~kGfGFI~~~~-------g~dvFvH~ 30 (66)
T 1c9o_A 7 KWFNNEKGYGFIEVEG-------GSDVFVHF 30 (66)
T ss_dssp EEEETTTTEEEEEETT-------EEEEEEEG
T ss_pred EEEECCCCeEEEecCC-------CccEEEEH
Confidence 3446788999998874 35666653
Done!