Query 031242
Match_columns 163
No_of_seqs 210 out of 3229
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.7 1.2E-17 2.5E-22 137.6 10.0 98 2-99 439-538 (623)
2 PLN00113 leucine-rich repeat r 99.6 1.2E-15 2.6E-20 131.2 9.5 90 3-92 521-610 (968)
3 PLN00113 leucine-rich repeat r 99.4 9.1E-13 2E-17 113.6 9.4 92 2-93 496-588 (968)
4 PLN03150 hypothetical protein; 99.3 4.2E-12 9.1E-17 104.9 8.0 86 7-92 420-506 (623)
5 PF13855 LRR_8: Leucine rich r 99.1 1.9E-11 4.1E-16 71.1 1.9 61 5-65 1-61 (61)
6 KOG0617 Ras suppressor protein 98.9 1.5E-10 3.2E-15 80.2 -0.4 83 3-87 54-138 (264)
7 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.3E-14 76.8 3.4 83 3-88 40-125 (175)
8 KOG0617 Ras suppressor protein 98.9 2.4E-10 5.3E-15 79.1 -0.4 82 3-86 31-112 (264)
9 KOG0472 Leucine-rich repeat pr 98.9 2.7E-10 5.8E-15 87.8 -0.6 84 2-88 225-309 (565)
10 KOG4237 Extracellular matrix p 98.8 8.2E-10 1.8E-14 84.9 0.9 91 1-91 270-361 (498)
11 KOG0444 Cytoskeletal regulator 98.7 1.7E-09 3.6E-14 87.9 0.1 85 3-89 101-186 (1255)
12 KOG4194 Membrane glycoprotein 98.7 2.2E-09 4.7E-14 86.4 -1.3 84 4-87 316-403 (873)
13 PF13855 LRR_8: Leucine rich r 98.6 1.3E-08 2.9E-13 58.9 1.5 59 29-87 1-60 (61)
14 KOG0472 Leucine-rich repeat pr 98.6 6.2E-09 1.4E-13 80.4 0.1 86 2-89 432-541 (565)
15 PF12799 LRR_4: Leucine Rich r 98.6 4.1E-08 8.8E-13 53.1 2.4 37 5-42 1-37 (44)
16 KOG0618 Serine/threonine phosp 98.5 8.7E-09 1.9E-13 86.3 -1.9 86 2-89 380-489 (1081)
17 KOG4194 Membrane glycoprotein 98.5 2.2E-08 4.7E-13 80.7 0.2 67 4-70 268-334 (873)
18 KOG4579 Leucine-rich repeat (L 98.5 1.3E-08 2.9E-13 68.0 -1.5 83 4-88 52-135 (177)
19 PF12799 LRR_4: Leucine Rich r 98.5 8.9E-08 1.9E-12 51.7 1.8 39 29-68 1-39 (44)
20 KOG0618 Serine/threonine phosp 98.5 2.7E-08 5.8E-13 83.5 -0.4 87 4-91 358-445 (1081)
21 PF14580 LRR_9: Leucine-rich r 98.5 3.9E-08 8.5E-13 68.9 0.3 81 3-87 17-99 (175)
22 KOG0444 Cytoskeletal regulator 98.4 2.4E-08 5.1E-13 81.4 -2.4 81 4-86 244-326 (1255)
23 KOG1259 Nischarin, modulator o 98.2 1.3E-07 2.9E-12 71.0 -1.1 62 4-68 283-344 (490)
24 KOG4658 Apoptotic ATPase [Sign 98.2 5.3E-07 1.1E-11 77.2 1.3 83 2-85 568-651 (889)
25 PLN03210 Resistant to P. syrin 98.1 1.3E-05 2.7E-10 71.1 7.2 84 3-87 632-715 (1153)
26 KOG1259 Nischarin, modulator o 98.0 1E-06 2.3E-11 66.3 -0.0 59 4-65 306-364 (490)
27 PRK15387 E3 ubiquitin-protein 98.0 5.8E-06 1.3E-10 70.0 4.0 56 30-89 403-458 (788)
28 KOG0532 Leucine-rich repeat (L 98.0 5.2E-07 1.1E-11 72.6 -2.1 80 7-88 145-246 (722)
29 COG4886 Leucine-rich repeat (L 98.0 4.4E-06 9.6E-11 65.6 2.5 80 6-87 141-220 (394)
30 COG4886 Leucine-rich repeat (L 97.9 2.6E-06 5.7E-11 66.9 0.7 82 3-86 161-242 (394)
31 PRK15387 E3 ubiquitin-protein 97.9 7.1E-06 1.5E-10 69.5 2.9 62 5-71 402-463 (788)
32 KOG4237 Extracellular matrix p 97.9 2E-06 4.3E-11 66.7 -0.5 84 7-90 69-154 (498)
33 KOG1859 Leucine-rich repeat pr 97.9 8.3E-07 1.8E-11 73.4 -2.7 85 4-91 208-294 (1096)
34 PRK15370 E3 ubiquitin-protein 97.9 1.9E-05 4E-10 66.9 5.1 56 6-67 221-276 (754)
35 PRK15370 E3 ubiquitin-protein 97.9 9.1E-06 2E-10 68.8 2.6 57 6-68 326-382 (754)
36 PLN03210 Resistant to P. syrin 97.8 5.5E-05 1.2E-09 67.2 7.0 86 4-91 610-696 (1153)
37 KOG0532 Leucine-rich repeat (L 97.7 5.5E-06 1.2E-10 66.9 -0.4 82 2-86 118-199 (722)
38 KOG0531 Protein phosphatase 1, 97.7 2.3E-05 5E-10 62.2 2.7 81 2-86 92-172 (414)
39 KOG1644 U2-associated snRNP A' 97.7 3.8E-05 8.3E-10 54.7 3.3 83 4-88 41-125 (233)
40 KOG4579 Leucine-rich repeat (L 97.7 4.5E-06 9.7E-11 56.1 -1.5 64 4-69 76-139 (177)
41 cd00116 LRR_RI Leucine-rich re 97.7 6.1E-06 1.3E-10 62.6 -1.1 15 52-66 192-206 (319)
42 cd00116 LRR_RI Leucine-rich re 97.6 7E-06 1.5E-10 62.3 -2.1 38 5-42 81-121 (319)
43 KOG1859 Leucine-rich repeat pr 97.5 6.3E-06 1.4E-10 68.4 -3.2 77 6-86 188-264 (1096)
44 KOG4658 Apoptotic ATPase [Sign 97.5 5.7E-05 1.2E-09 65.1 2.0 88 4-92 544-634 (889)
45 PF00560 LRR_1: Leucine Rich R 97.0 0.00017 3.7E-09 32.7 0.2 19 7-26 2-20 (22)
46 KOG0531 Protein phosphatase 1, 97.0 0.00017 3.7E-09 57.3 0.2 81 4-87 71-151 (414)
47 KOG1644 U2-associated snRNP A' 96.9 0.00079 1.7E-08 48.1 2.8 84 1-85 60-149 (233)
48 KOG2739 Leucine-rich acidic nu 96.9 0.00068 1.5E-08 49.9 2.4 62 3-66 63-129 (260)
49 KOG2739 Leucine-rich acidic nu 96.8 0.00076 1.6E-08 49.7 2.2 80 5-86 43-126 (260)
50 PF00560 LRR_1: Leucine Rich R 96.8 0.00038 8.3E-09 31.6 0.4 21 30-51 1-21 (22)
51 KOG3207 Beta-tubulin folding c 96.8 0.00063 1.4E-08 53.7 1.5 61 5-66 246-314 (505)
52 KOG3207 Beta-tubulin folding c 96.7 0.00062 1.3E-08 53.7 1.2 85 3-88 220-313 (505)
53 PF13504 LRR_7: Leucine rich r 96.1 0.0037 8E-08 26.4 1.2 13 6-18 2-14 (17)
54 KOG2123 Uncharacterized conser 95.8 0.0018 3.9E-08 48.7 -0.7 65 3-70 39-105 (388)
55 KOG2982 Uncharacterized conser 95.7 0.0072 1.6E-07 45.9 2.3 62 3-64 95-157 (418)
56 KOG0473 Leucine-rich repeat pr 95.7 0.00049 1.1E-08 50.4 -3.9 55 9-65 69-123 (326)
57 KOG2982 Uncharacterized conser 95.4 0.0025 5.3E-08 48.4 -1.3 62 4-65 70-133 (418)
58 KOG3665 ZYG-1-like serine/thre 95.3 0.015 3.2E-07 49.3 2.9 60 3-64 171-231 (699)
59 smart00369 LRR_TYP Leucine-ric 95.1 0.021 4.5E-07 26.7 1.9 18 5-23 2-19 (26)
60 smart00370 LRR Leucine-rich re 95.1 0.021 4.5E-07 26.7 1.9 18 5-23 2-19 (26)
61 smart00370 LRR Leucine-rich re 94.7 0.025 5.4E-07 26.4 1.7 20 28-48 1-20 (26)
62 smart00369 LRR_TYP Leucine-ric 94.7 0.025 5.4E-07 26.4 1.7 20 28-48 1-20 (26)
63 PRK15386 type III secretion pr 94.4 0.06 1.3E-06 42.9 4.1 53 4-63 51-104 (426)
64 KOG3665 ZYG-1-like serine/thre 94.1 0.022 4.8E-07 48.3 1.2 82 4-87 147-231 (699)
65 PF15176 LRR19-TM: Leucine-ric 94.0 0.14 3E-06 32.3 4.2 39 122-160 17-55 (102)
66 KOG0473 Leucine-rich repeat pr 93.8 0.0017 3.7E-08 47.6 -5.1 83 3-87 40-122 (326)
67 KOG1909 Ran GTPase-activating 92.4 0.037 8E-07 42.8 -0.0 85 4-88 212-310 (382)
68 PF08693 SKG6: Transmembrane a 91.7 0.18 3.8E-06 26.3 2.0 19 122-140 15-33 (40)
69 smart00364 LRR_BAC Leucine-ric 91.4 0.14 3.1E-06 24.0 1.3 17 6-23 3-19 (26)
70 PRK15386 type III secretion pr 90.8 0.28 6.1E-06 39.2 3.3 31 6-39 73-104 (426)
71 KOG2123 Uncharacterized conser 90.7 0.011 2.5E-07 44.5 -4.2 80 4-87 18-99 (388)
72 KOG1909 Ran GTPase-activating 90.7 0.066 1.4E-06 41.4 -0.2 42 25-66 209-254 (382)
73 PF01102 Glycophorin_A: Glycop 90.6 0.12 2.7E-06 34.0 1.0 25 120-144 65-89 (122)
74 smart00365 LRR_SD22 Leucine-ri 90.0 0.3 6.4E-06 23.0 1.7 14 5-18 2-15 (26)
75 PF13306 LRR_5: Leucine rich r 89.4 0.63 1.4E-05 30.1 3.7 80 2-84 9-89 (129)
76 PF13516 LRR_6: Leucine Rich r 88.7 0.18 3.8E-06 22.9 0.5 14 5-18 2-15 (24)
77 smart00368 LRR_RI Leucine rich 87.8 0.47 1E-05 22.5 1.7 14 5-18 2-15 (28)
78 PF13306 LRR_5: Leucine rich r 87.4 0.82 1.8E-05 29.6 3.3 60 2-63 32-91 (129)
79 PTZ00382 Variant-specific surf 86.8 0.46 1E-05 29.9 1.7 21 120-140 67-87 (96)
80 COG5238 RNA1 Ran GTPase-activa 86.7 0.5 1.1E-05 35.8 2.1 40 3-42 90-133 (388)
81 PF12191 stn_TNFRSF12A: Tumour 85.5 0.49 1.1E-05 31.1 1.3 29 119-147 79-107 (129)
82 PF07204 Orthoreo_P10: Orthore 83.6 1.1 2.3E-05 27.9 2.2 28 118-145 41-68 (98)
83 PF04478 Mid2: Mid2 like cell 83.3 0.69 1.5E-05 31.6 1.3 11 120-130 50-60 (154)
84 PF02439 Adeno_E3_CR2: Adenovi 78.4 1.1 2.5E-05 22.9 0.8 9 123-131 7-15 (38)
85 KOG2120 SCF ubiquitin ligase, 78.2 0.73 1.6E-05 35.5 0.2 78 6-85 287-372 (419)
86 PF08374 Protocadherin: Protoc 76.5 6.7 0.00015 28.4 4.6 24 119-142 38-61 (221)
87 PF02009 Rifin_STEVOR: Rifin/s 74.8 3.2 6.8E-05 31.8 2.8 15 131-145 269-283 (299)
88 PTZ00370 STEVOR; Provisional 74.8 1.4 3E-05 33.3 0.9 11 138-148 276-286 (296)
89 TIGR00864 PCC polycystin catio 74.3 1.8 4E-05 42.1 1.6 33 35-67 1-33 (2740)
90 COG5238 RNA1 Ran GTPase-activa 74.2 2.2 4.8E-05 32.5 1.7 16 4-19 29-44 (388)
91 TIGR01478 STEVOR variant surfa 72.4 1.5 3.2E-05 33.1 0.5 10 139-148 281-290 (295)
92 KOG2120 SCF ubiquitin ligase, 72.1 0.21 4.6E-06 38.3 -4.0 63 4-66 209-273 (419)
93 PF14991 MLANA: Protein melan- 70.9 1.2 2.7E-05 28.7 -0.2 14 143-156 47-60 (118)
94 PF08114 PMP1_2: ATPase proteo 70.3 12 0.00025 19.5 3.4 7 139-145 27-33 (43)
95 PF03302 VSP: Giardia variant- 69.6 3.3 7E-05 33.1 1.9 24 119-142 367-390 (397)
96 PF15176 LRR19-TM: Leucine-ric 69.3 9.6 0.00021 24.1 3.5 33 117-149 15-47 (102)
97 KOG3763 mRNA export factor TAP 69.2 2.3 5E-05 35.1 1.0 34 29-63 218-254 (585)
98 PF05454 DAG1: Dystroglycan (D 69.0 1.6 3.4E-05 33.3 0.0 23 120-142 149-171 (290)
99 KOG3763 mRNA export factor TAP 68.6 2.4 5.2E-05 35.0 1.0 63 3-68 216-285 (585)
100 PF14575 EphA2_TM: Ephrin type 63.2 1.9 4E-05 25.9 -0.5 17 126-142 8-24 (75)
101 PF01102 Glycophorin_A: Glycop 62.7 4.1 8.9E-05 26.9 1.0 23 124-146 72-94 (122)
102 PF01034 Syndecan: Syndecan do 61.4 2.5 5.4E-05 24.4 -0.1 6 123-128 13-18 (64)
103 KOG3864 Uncharacterized conser 59.8 1.6 3.4E-05 31.6 -1.4 56 8-63 104-161 (221)
104 PF04478 Mid2: Mid2 like cell 59.4 5.5 0.00012 27.3 1.2 27 119-146 53-79 (154)
105 PF06365 CD34_antigen: CD34/Po 59.2 14 0.0003 26.7 3.3 24 125-148 107-130 (202)
106 PF14610 DUF4448: Protein of u 59.1 5.8 0.00013 28.1 1.4 25 118-142 156-180 (189)
107 PF05283 MGC-24: Multi-glycosy 58.7 19 0.00041 25.6 3.8 21 125-145 164-184 (186)
108 TIGR00864 PCC polycystin catio 58.6 5.8 0.00013 39.0 1.6 33 11-44 1-34 (2740)
109 PTZ00046 rifin; Provisional 56.8 9 0.00019 30.1 2.1 16 132-147 329-344 (358)
110 PF01299 Lamp: Lysosome-associ 56.7 4.2 9E-05 31.2 0.3 18 120-137 271-288 (306)
111 PF12877 DUF3827: Domain of un 56.0 16 0.00035 30.9 3.6 15 117-131 268-282 (684)
112 PF15102 TMEM154: TMEM154 prot 54.2 8.8 0.00019 26.1 1.5 29 121-149 58-86 (146)
113 TIGR01477 RIFIN variant surfac 54.2 11 0.00023 29.6 2.2 15 132-146 324-338 (353)
114 PRK10132 hypothetical protein; 53.8 11 0.00025 24.2 2.0 19 125-143 89-107 (108)
115 PF02480 Herpes_gE: Alphaherpe 51.6 4.9 0.00011 32.6 0.0 7 143-149 379-385 (439)
116 PF05393 Hum_adeno_E3A: Human 51.1 17 0.00037 22.4 2.2 16 132-147 45-60 (94)
117 PF15345 TMEM51: Transmembrane 47.8 87 0.0019 23.1 5.8 6 120-125 58-63 (233)
118 PF04971 Lysis_S: Lysis protei 47.5 17 0.00037 21.3 1.8 24 119-142 33-56 (68)
119 PF14316 DUF4381: Domain of un 47.3 30 0.00065 23.3 3.4 12 142-153 43-54 (146)
120 PF02480 Herpes_gE: Alphaherpe 45.3 7 0.00015 31.7 0.0 33 120-152 353-385 (439)
121 PF10661 EssA: WXG100 protein 45.3 20 0.00044 24.4 2.2 20 129-148 125-144 (145)
122 smart00367 LRR_CC Leucine-rich 45.3 16 0.00035 16.5 1.3 11 5-15 2-12 (26)
123 PF10883 DUF2681: Protein of u 43.0 41 0.0009 20.8 3.1 19 127-145 8-26 (87)
124 PRK10404 hypothetical protein; 42.0 23 0.00051 22.5 2.0 18 125-142 83-100 (101)
125 PF06809 NPDC1: Neural prolife 41.5 36 0.00078 26.3 3.2 22 124-145 203-225 (341)
126 PF05545 FixQ: Cbb3-type cytoc 40.5 32 0.00069 18.5 2.2 6 139-144 28-33 (49)
127 PF10873 DUF2668: Protein of u 40.4 40 0.00086 23.0 2.9 23 119-141 61-83 (155)
128 PRK01844 hypothetical protein; 39.9 43 0.00093 19.9 2.7 8 132-139 16-23 (72)
129 PF08374 Protocadherin: Protoc 39.7 49 0.0011 24.1 3.5 27 116-142 38-64 (221)
130 PRK00523 hypothetical protein; 37.4 50 0.0011 19.6 2.7 6 132-137 17-22 (72)
131 PF12606 RELT: Tumour necrosis 37.0 19 0.00041 19.8 0.9 21 135-155 15-35 (50)
132 PF01299 Lamp: Lysosome-associ 35.6 4.7 0.0001 30.9 -2.3 31 119-150 274-304 (306)
133 KOG1947 Leucine rich repeat pr 33.9 19 0.00041 28.6 0.8 83 4-86 213-305 (482)
134 PF14986 DUF4514: Domain of un 33.9 73 0.0016 17.7 2.8 16 120-135 23-38 (61)
135 PF15012 DUF4519: Domain of un 33.5 20 0.00042 20.2 0.6 25 120-144 29-53 (56)
136 PF11980 DUF3481: Domain of un 33.2 32 0.0007 21.0 1.5 9 137-145 35-43 (87)
137 PF05808 Podoplanin: Podoplani 32.3 15 0.00033 25.4 0.0 31 120-150 130-161 (162)
138 PLN03155 cytochrome c oxidase 31.9 1E+02 0.0023 17.6 3.6 13 143-155 42-54 (63)
139 PF03229 Alpha_GJ: Alphavirus 31.8 1.5E+02 0.0033 19.4 5.5 30 121-150 85-116 (126)
140 PF05568 ASFV_J13L: African sw 31.0 80 0.0017 21.5 3.2 9 140-148 51-59 (189)
141 PF04418 DUF543: Domain of unk 30.4 64 0.0014 19.3 2.5 15 129-143 36-50 (75)
142 PF05957 DUF883: Bacterial pro 30.0 47 0.001 20.5 2.0 18 125-142 76-93 (94)
143 PF03672 UPF0154: Uncharacteri 29.8 1.2E+02 0.0026 17.6 3.5 11 130-140 7-17 (64)
144 PF10808 DUF2542: Protein of u 29.7 89 0.0019 18.7 2.9 26 131-156 10-35 (79)
145 PF06716 DUF1201: Protein of u 29.5 99 0.0022 16.6 3.9 11 132-142 13-23 (54)
146 PF12259 DUF3609: Protein of u 29.4 75 0.0016 25.2 3.4 19 124-142 302-320 (361)
147 PF12768 Rax2: Cortical protei 28.8 32 0.00069 26.2 1.2 6 55-60 142-147 (281)
148 PF14654 Epiglycanin_C: Mucin, 28.7 65 0.0014 20.3 2.3 14 128-142 28-41 (106)
149 PF10669 Phage_Gp23: Protein g 28.3 1.5E+02 0.0033 18.7 3.9 10 144-153 34-43 (121)
150 PF05454 DAG1: Dystroglycan (D 27.2 21 0.00045 27.3 0.0 35 119-153 145-179 (290)
151 PHA03265 envelope glycoprotein 26.5 1.4E+02 0.0031 23.6 4.4 8 140-147 367-374 (402)
152 PF15179 Myc_target_1: Myc tar 25.7 43 0.00094 23.7 1.3 11 122-132 27-37 (197)
153 PF02404 SCF: Stem cell factor 25.5 23 0.0005 26.5 0.0 28 119-146 215-242 (273)
154 PTZ00370 STEVOR; Provisional 25.4 79 0.0017 24.2 2.7 6 141-146 276-281 (296)
155 PF02009 Rifin_STEVOR: Rifin/s 25.1 1.1E+02 0.0024 23.5 3.6 33 125-157 259-292 (299)
156 PF11353 DUF3153: Protein of u 24.3 58 0.0013 23.4 1.9 18 125-142 186-203 (209)
157 TIGR03141 cytochro_ccmD heme e 24.2 1.2E+02 0.0027 15.9 4.2 12 122-133 8-19 (45)
158 PF04367 DUF502: Protein of un 23.8 1.7E+02 0.0037 18.5 3.8 16 145-160 19-34 (108)
159 KOG4308 LRR-containing protein 23.5 14 0.0003 30.4 -1.7 62 4-65 114-184 (478)
160 PHA03240 envelope glycoprotein 23.2 1.2E+02 0.0026 22.3 3.2 16 133-148 223-238 (258)
161 COG3197 FixS Uncharacterized p 23.1 78 0.0017 17.9 1.8 19 124-142 6-24 (58)
162 COG0811 TolQ Biopolymer transp 22.9 1.8E+02 0.004 21.1 4.2 31 126-156 168-198 (216)
163 PF02937 COX6C: Cytochrome c o 22.6 1.8E+02 0.0039 17.3 3.9 9 144-152 42-50 (73)
164 PF02060 ISK_Channel: Slow vol 21.8 89 0.0019 20.8 2.1 12 119-130 44-55 (129)
165 PF15069 FAM163: FAM163 family 21.8 1.4E+02 0.003 20.3 3.1 8 135-142 21-28 (143)
166 PF07213 DAP10: DAP10 membrane 21.8 13 0.00029 22.4 -1.5 24 121-144 36-59 (79)
167 PF04995 CcmD: Heme exporter p 21.6 1.4E+02 0.0031 15.7 4.1 15 122-136 7-21 (46)
168 TIGR01195 oadG_fam sodium pump 21.3 1.3E+02 0.0028 18.2 2.7 8 126-133 13-20 (82)
169 PF03302 VSP: Giardia variant- 21.3 54 0.0012 26.2 1.3 23 120-142 364-386 (397)
170 PRK09174 F0F1 ATP synthase sub 21.1 1.5E+02 0.0033 21.4 3.5 13 147-159 76-88 (204)
171 PF05795 Plasmodium_Vir: Plasm 20.2 1.3E+02 0.0028 23.0 3.2 17 127-143 287-303 (354)
172 PF11286 DUF3087: Protein of u 20.2 1E+02 0.0023 21.5 2.3 13 149-161 81-93 (165)
173 PF11628 TCR_zetazeta: T-cell 20.1 1.4E+02 0.0029 14.8 2.5 16 127-142 10-25 (33)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=137.55 Aligned_cols=98 Identities=35% Similarity=0.622 Sum_probs=85.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCc--ccCCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTST--QLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~l~~l~ 79 (163)
+++++|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.+|..++++++|+.|++++|.++|.+|... ....+.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999988752 234556
Q ss_pred cccccCCCCCCCCCCCCCCC
Q 031242 80 PTSYEGNKGLYGPPLTNESQ 99 (163)
Q Consensus 80 ~l~~~~n~~lc~~~~~~~c~ 99 (163)
.+.+.+|+++|+.|....|.
T Consensus 519 ~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 519 SFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred eEEecCCccccCCCCCCCCc
Confidence 78889999999877656674
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=1.2e-15 Score=131.21 Aligned_cols=90 Identities=38% Similarity=0.648 Sum_probs=53.6
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
++++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+++|+.+++++|++.+.+|....+..+....
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 600 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence 44555566666666665555555566666666666666665566655556666666666666666555555555555555
Q ss_pred ccCCCCCCCC
Q 031242 83 YEGNKGLYGP 92 (163)
Q Consensus 83 ~~~n~~lc~~ 92 (163)
+.||+.+|+.
T Consensus 601 ~~~n~~lc~~ 610 (968)
T PLN00113 601 VAGNIDLCGG 610 (968)
T ss_pred hcCCccccCC
Confidence 6666666653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.41 E-value=9.1e-13 Score=113.56 Aligned_cols=92 Identities=37% Similarity=0.578 Sum_probs=78.9
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++++|+.|++++|.+++.+|..+.++++|+.|++++|.++|.+|..+..+++|+.|++++|++++.+|.. ..+..|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 45678888999999998889988999999999999999999999999999999999999999999887765 66788888
Q ss_pred ccccCCCCCCCCC
Q 031242 81 TSYEGNKGLYGPP 93 (163)
Q Consensus 81 l~~~~n~~lc~~~ 93 (163)
+++++|+..+..|
T Consensus 576 l~ls~N~l~~~~p 588 (968)
T PLN00113 576 VNISHNHLHGSLP 588 (968)
T ss_pred EeccCCcceeeCC
Confidence 9999988766443
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=4.2e-12 Score=104.89 Aligned_cols=86 Identities=36% Similarity=0.571 Sum_probs=79.2
Q ss_pred CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccC
Q 031242 7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEG 85 (163)
Q Consensus 7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~ 85 (163)
++.|+|++|.++|.+|..+..+++|+.|++++|.++|.+|..++.+++|+.|++++|++++.+|.. ..+.+|+.+++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999999999999999999999999999999999999999999999999999999988875 7889999999999
Q ss_pred CCCCCCC
Q 031242 86 NKGLYGP 92 (163)
Q Consensus 86 n~~lc~~ 92 (163)
|...+..
T Consensus 500 N~l~g~i 506 (623)
T PLN03150 500 NSLSGRV 506 (623)
T ss_pred CcccccC
Confidence 9765543
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=1.9e-11 Score=71.10 Aligned_cols=61 Identities=46% Similarity=0.612 Sum_probs=53.6
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 65 (163)
++|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|+.+++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999944446789999999999999999966667899999999999999975
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.92 E-value=1.5e-10 Score=80.19 Aligned_cols=83 Identities=30% Similarity=0.532 Sum_probs=49.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc-CC-CCcccCCCCc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK-IP-TSTQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~-~p-~~~~l~~l~~ 80 (163)
.+.+|++|++++|+++ .+|.+++.++.|+.|++.-|++. .+|..|+.++.|+.||+.+|+++.- .| ++..+..++.
T Consensus 54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 3556666667777666 66666666666666666666666 6666666666666666666665421 22 2233444444
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+.++.|.
T Consensus 132 lyl~dnd 138 (264)
T KOG0617|consen 132 LYLGDND 138 (264)
T ss_pred HHhcCCC
Confidence 4444443
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1e-09 Score=76.79 Aligned_cols=83 Identities=30% Similarity=0.382 Sum_probs=39.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhh-cCCCCcccccccCccccCcCC--CCcccCCCC
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS 79 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~ 79 (163)
.+.+|+.|++++|.++ .++ .+..++.|+.|++++|.++ .+...+ ..+++|+.|++++|++...-. ....+++|+
T Consensus 40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4678999999999999 564 4788999999999999999 665544 468999999999999975432 235688889
Q ss_pred cccccCCCC
Q 031242 80 PTSYEGNKG 88 (163)
Q Consensus 80 ~l~~~~n~~ 88 (163)
.+++.|||.
T Consensus 117 ~L~L~~NPv 125 (175)
T PF14580_consen 117 VLSLEGNPV 125 (175)
T ss_dssp EEE-TT-GG
T ss_pred eeeccCCcc
Confidence 999999985
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.88 E-value=2.4e-10 Score=79.14 Aligned_cols=82 Identities=28% Similarity=0.418 Sum_probs=73.6
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
++.+.+.|.||+|+++ .+|+.+..+.+|+.|++++|++. .+|.++..++.|+.|+++.|++.-.+..++.++.++.++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4566778899999999 99999999999999999999999 999999999999999999999997777778888888887
Q ss_pred ccCC
Q 031242 83 YEGN 86 (163)
Q Consensus 83 ~~~n 86 (163)
+..|
T Consensus 109 ltyn 112 (264)
T KOG0617|consen 109 LTYN 112 (264)
T ss_pred cccc
Confidence 7665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.87 E-value=2.7e-10 Score=87.82 Aligned_cols=84 Identities=25% Similarity=0.332 Sum_probs=71.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCccc-CCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSF-GNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~ 80 (163)
+++..|.++.++.|++. .+|.+. +++.++..||+.+|+++ ++|++++-+.+|..||+++|.+++.++..+.+ .+..
T Consensus 225 ~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF 301 (565)
T ss_pred CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence 45555666666777766 666553 48899999999999999 99999999999999999999999999988888 8889
Q ss_pred ccccCCCC
Q 031242 81 TSYEGNKG 88 (163)
Q Consensus 81 l~~~~n~~ 88 (163)
+.+.|||.
T Consensus 302 L~leGNPl 309 (565)
T KOG0472|consen 302 LALEGNPL 309 (565)
T ss_pred hhhcCCch
Confidence 99999975
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=8.2e-10 Score=84.87 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFS 79 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~ 79 (163)
|.+|++|+.|+|++|++++.-+.+|.++.+++.|.|..|++....-..|..+..|++|++.+|+|+..-|.. ..+.++.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 467999999999999999888889999999999999999998444556889999999999999999877755 5677888
Q ss_pred cccccCCCCCCC
Q 031242 80 PTSYEGNKGLYG 91 (163)
Q Consensus 80 ~l~~~~n~~lc~ 91 (163)
.+.+.+||+.|.
T Consensus 350 ~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 350 TLNLLSNPFNCN 361 (498)
T ss_pred eeehccCcccCc
Confidence 999999999996
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.74 E-value=1.7e-09 Score=87.87 Aligned_cols=85 Identities=31% Similarity=0.391 Sum_probs=67.8
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh-hcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
.+..|++||||.|++. ..|..+..-+++-.|+||+|++. .+|.. +.+++.|-.||+++|++...+|...++..|..+
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 4566778888888888 78887777778888888888887 67765 567888888889999888888888888888888
Q ss_pred cccCCCCC
Q 031242 82 SYEGNKGL 89 (163)
Q Consensus 82 ~~~~n~~l 89 (163)
.+++||..
T Consensus 179 ~Ls~NPL~ 186 (1255)
T KOG0444|consen 179 KLSNNPLN 186 (1255)
T ss_pred hcCCChhh
Confidence 88888753
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.67 E-value=2.2e-09 Score=86.35 Aligned_cols=84 Identities=30% Similarity=0.339 Sum_probs=54.5
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC----cccCCCC
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS----TQLQSFS 79 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~----~~l~~l~ 79 (163)
.++|++|+||+|+++...+++|..|.+|+.|+|++|.++...-..|..+++|+.||+++|.++..+.+. ..+++|+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 456777777777777555556666666666677776666444455666777777777777777666543 3456666
Q ss_pred cccccCCC
Q 031242 80 PTSYEGNK 87 (163)
Q Consensus 80 ~l~~~~n~ 87 (163)
.+.+.||.
T Consensus 396 kL~l~gNq 403 (873)
T KOG4194|consen 396 KLRLTGNQ 403 (873)
T ss_pred heeecCce
Confidence 66666664
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=1.3e-08 Score=58.91 Aligned_cols=59 Identities=34% Similarity=0.450 Sum_probs=51.2
Q ss_pred cccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccCCC
Q 031242 29 KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNK 87 (163)
Q Consensus 29 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~n~ 87 (163)
++|+.|++++|+++..-+..|..+++|+++++++|.+....|.. ..++.++.+++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999444467899999999999999999888765 788999999999885
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.62 E-value=6.2e-09 Score=80.45 Aligned_cols=86 Identities=27% Similarity=0.457 Sum_probs=69.9
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh------------------------hcCCCCccc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ------------------------LASLNFLSV 57 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~------------------------~~~l~~L~~ 57 (163)
+.+++|..|+|++|.+. .+|.+++.+..||.||++.|++. .+|.. +..+.+|.+
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 46788899999999998 89999999999999999988765 44433 455778888
Q ss_pred ccccCccccCcCCCCcccCCCCcccccCCCCC
Q 031242 58 LNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGL 89 (163)
Q Consensus 58 L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~~l 89 (163)
||+.+|.+..+||..+.+++++++.+.|||+-
T Consensus 510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchhhCChhhccccceeEEEecCCccC
Confidence 88888888877777788888888888888764
No 15
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.58 E-value=4.1e-08 Score=53.09 Aligned_cols=37 Identities=41% Similarity=0.671 Sum_probs=23.1
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCC
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 42 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 42 (163)
++|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666777777776 56665666666666666666665
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.52 E-value=8.7e-09 Score=86.31 Aligned_cols=86 Identities=37% Similarity=0.516 Sum_probs=56.9
Q ss_pred CCCCCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCchhhc----------------------CCCCcccc
Q 031242 2 GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLA----------------------SLNFLSVL 58 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~----------------------~l~~L~~L 58 (163)
.++++|++|+|++|+++ .+| ..+.++..|+.|+||+|+|+ .+|..+. +++.|+.+
T Consensus 380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence 35677888888888888 666 44677788888888888776 6665544 45566666
Q ss_pred cccCccccCcC-CCCcccCCCCcccccCCCCC
Q 031242 59 NLSYNNLVGKI-PTSTQLQSFSPTSYEGNKGL 89 (163)
Q Consensus 59 ~l~~N~l~~~~-p~~~~l~~l~~l~~~~n~~l 89 (163)
|++.|.++... |....-++|+.+++.||.++
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 66666665432 22222267778888888753
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.51 E-value=2.2e-08 Score=80.73 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=36.5
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP 70 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p 70 (163)
|.++++|+|+.|+++..-...+.+|++|+.|++|.|.+....+++|.-.++|++|++++|+++...+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 4455555555555553333444555555555555555555555555555555555555555555444
No 18
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.47 E-value=1.3e-08 Score=68.02 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=69.6
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCC-cccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNL-KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
...|+..+|++|.+. ..|+.|... +.++.+++++|.++ .+|.++..++.|+.++++.|.+...+.....+.++..++
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 356777899999999 788777654 58999999999999 999999999999999999999997776666677777777
Q ss_pred ccCCCC
Q 031242 83 YEGNKG 88 (163)
Q Consensus 83 ~~~n~~ 88 (163)
..+|..
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 666643
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.46 E-value=8.9e-08 Score=51.75 Aligned_cols=39 Identities=41% Similarity=0.603 Sum_probs=33.7
Q ss_pred cccceeccccccCCCcCchhhcCCCCcccccccCccccCc
Q 031242 29 KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK 68 (163)
Q Consensus 29 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~ 68 (163)
++|++|++++|+++ .+|..+.++++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 47899999999999 7888899999999999999999854
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.46 E-value=2.7e-08 Score=83.47 Aligned_cols=87 Identities=31% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh-hcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
+..|+.|++.+|.++...-+.+.+.++|+.|+|+.|+|. ++|.. +.++..|+.|++|+|++..++-....+..|..+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 456888999999999877777899999999999999999 88875 7889999999999999986654445555555555
Q ss_pred ccCCCCCCC
Q 031242 83 YEGNKGLYG 91 (163)
Q Consensus 83 ~~~n~~lc~ 91 (163)
..+|...|-
T Consensus 437 ahsN~l~~f 445 (1081)
T KOG0618|consen 437 AHSNQLLSF 445 (1081)
T ss_pred hcCCceeec
Confidence 566655553
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=3.9e-08 Score=68.87 Aligned_cols=81 Identities=30% Similarity=0.400 Sum_probs=27.8
Q ss_pred CCCCCCeEEccCCCCCCCCCcccC-CCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+..++++|+|++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|+++...+.. ..+++|..
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3456899999999999 554 455 5889999999999999 554 4778999999999999999764433 35788999
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+.+++|.
T Consensus 93 L~L~~N~ 99 (175)
T PF14580_consen 93 LYLSNNK 99 (175)
T ss_dssp EE-TTS-
T ss_pred EECcCCc
Confidence 9998885
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.38 E-value=2.4e-08 Score=81.40 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=38.8
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc--CcCCCCcccCCCCcc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV--GKIPTSTQLQSFSPT 81 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~l~~l~~l 81 (163)
+.+|+.|+||+|.++ .+.-..+.+.+|++|++|+|+++ .+|..++.++.|+.|.+.+|++. |++...+.+..|+.+
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 334444444444444 33333344444455555555555 55555555555555555555432 333333455555554
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
....|
T Consensus 322 ~aanN 326 (1255)
T KOG0444|consen 322 HAANN 326 (1255)
T ss_pred Hhhcc
Confidence 44444
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=1.3e-07 Score=70.96 Aligned_cols=62 Identities=32% Similarity=0.370 Sum_probs=47.8
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK 68 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~ 68 (163)
.+.|+++|||+|.++ .+.++.+-++.++.|++|+|.+. .+-. +..+++|+.||+++|.++..
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh
Confidence 456788888888888 77777888888888888888887 4433 67788888888888877643
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=5.3e-07 Score=77.25 Aligned_cols=83 Identities=33% Similarity=0.420 Sum_probs=68.5
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..++.|++|||++|.=-+.+|+.++.|-+|++|++++..++ .+|..+.++..|.+||+..+.-...+|.. ..+++|+.
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 35889999999998766699999999999999999999999 89999999999999999988765555555 34777777
Q ss_pred ccccC
Q 031242 81 TSYEG 85 (163)
Q Consensus 81 l~~~~ 85 (163)
+.+..
T Consensus 647 L~l~~ 651 (889)
T KOG4658|consen 647 LRLPR 651 (889)
T ss_pred EEeec
Confidence 66543
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=1.3e-05 Score=71.12 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=46.9
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
.+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|....+.+|..+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 355566666665543324443 5556666666666654444666666666666666666654333444433455666666
Q ss_pred ccCCC
Q 031242 83 YEGNK 87 (163)
Q Consensus 83 ~~~n~ 87 (163)
+.+|.
T Consensus 711 Lsgc~ 715 (1153)
T PLN03210 711 LSGCS 715 (1153)
T ss_pred CCCCC
Confidence 65554
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=1e-06 Score=66.27 Aligned_cols=59 Identities=27% Similarity=0.336 Sum_probs=40.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 65 (163)
++.++.|++|+|.+. .+.. +..+.+|+.||+|+|.++ ++-..-..+.+.++|+++.|.+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 567889999999988 5544 788899999999999887 4444333444444444444444
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.01 E-value=5.8e-06 Score=69.98 Aligned_cols=56 Identities=25% Similarity=0.216 Sum_probs=33.2
Q ss_pred ccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccCCCCC
Q 031242 30 QIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGL 89 (163)
Q Consensus 30 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~~l 89 (163)
+|+.|++++|+++ .+|.. ..+|+.|++++|+++.++.....+..+..+++++|+.-
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 4455555555555 34432 23456667777777654444456777777888888754
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.00 E-value=5.2e-07 Score=72.63 Aligned_cols=80 Identities=31% Similarity=0.377 Sum_probs=43.9
Q ss_pred CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCC----------------------CcccccccCcc
Q 031242 7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLN----------------------FLSVLNLSYNN 64 (163)
Q Consensus 7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~----------------------~L~~L~l~~N~ 64 (163)
|++|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++.+. .|..||++.|+
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNk 222 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNK 222 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCc
Confidence 444445555555 44544444444444444444444 3444333332 34566667777
Q ss_pred ccCcCCCCcccCCCCcccccCCCC
Q 031242 65 LVGKIPTSTQLQSFSPTSYEGNKG 88 (163)
Q Consensus 65 l~~~~p~~~~l~~l~~l~~~~n~~ 88 (163)
++.++-.+..++.|+.+.+..||.
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCC
Confidence 765555566677777777777764
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.97 E-value=4.4e-06 Score=65.59 Aligned_cols=80 Identities=34% Similarity=0.513 Sum_probs=52.7
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccC
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG 85 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~ 85 (163)
+|+.|+++.|.+. .+|..++.++.|+.|+++.|+++ .+|...+..+.|+.+++++|+++..++.......+..+.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 5677777777777 66666667777777777777777 666655566777777777777775554433444566666666
Q ss_pred CC
Q 031242 86 NK 87 (163)
Q Consensus 86 n~ 87 (163)
|.
T Consensus 219 N~ 220 (394)
T COG4886 219 NS 220 (394)
T ss_pred Cc
Confidence 63
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.93 E-value=2.6e-06 Score=66.85 Aligned_cols=82 Identities=29% Similarity=0.507 Sum_probs=37.6
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
.++.|+.|+++.|+++ .+|.....++.|+.|++++|+++ .+|........|+.+.+++|.+...+.....+..+..+.
T Consensus 161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 3445555555555555 44444444555555555555555 444444344445555555553332333333333333333
Q ss_pred ccCC
Q 031242 83 YEGN 86 (163)
Q Consensus 83 ~~~n 86 (163)
+..|
T Consensus 239 l~~n 242 (394)
T COG4886 239 LSNN 242 (394)
T ss_pred cCCc
Confidence 3333
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=7.1e-06 Score=69.46 Aligned_cols=62 Identities=31% Similarity=0.350 Sum_probs=51.1
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT 71 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 71 (163)
++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+.
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 35677777777777 46653 346888999999999 8999999999999999999999987654
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.90 E-value=2e-06 Score=66.66 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=61.4
Q ss_pred CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccc-cCccccCcCCCC-cccCCCCccccc
Q 031242 7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL-SYNNLVGKIPTS-TQLQSFSPTSYE 84 (163)
Q Consensus 7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l-~~N~l~~~~p~~-~~l~~l~~l~~~ 84 (163)
-.+++|..|+|+...|.+|+.+++|+.||||+|.|+-.-|..|..+.+|..|-+ ++|+|+..+... ..+..+..+.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456899999999444467899999999999999999777888988888766555 458888666443 455555555555
Q ss_pred CCCCCC
Q 031242 85 GNKGLY 90 (163)
Q Consensus 85 ~n~~lc 90 (163)
.|.-.|
T Consensus 149 an~i~C 154 (498)
T KOG4237|consen 149 ANHINC 154 (498)
T ss_pred hhhhcc
Confidence 554444
No 33
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=8.3e-07 Score=73.44 Aligned_cols=85 Identities=27% Similarity=0.250 Sum_probs=54.0
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCcc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPT 81 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l 81 (163)
|++|+.|||++|.+. .+|.--..-.+|+.|.+++|.++ .+ ..+.++.+|+.||+++|-|.+--. ....+..|+.+
T Consensus 208 l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred cccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 455666666666666 55542111223666666666655 22 235678888999999998775322 22456777889
Q ss_pred cccCCCCCCC
Q 031242 82 SYEGNKGLYG 91 (163)
Q Consensus 82 ~~~~n~~lc~ 91 (163)
.+.|||-.|.
T Consensus 285 ~LeGNPl~c~ 294 (1096)
T KOG1859|consen 285 WLEGNPLCCA 294 (1096)
T ss_pred hhcCCccccC
Confidence 9999998886
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.89 E-value=1.9e-05 Score=66.92 Aligned_cols=56 Identities=30% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
+|+.|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|++..
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC 276 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc
Confidence 3444444444444 3333221 23444444444444 3343322 245555555555543
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.85 E-value=9.1e-06 Score=68.76 Aligned_cols=57 Identities=33% Similarity=0.528 Sum_probs=27.4
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK 68 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~ 68 (163)
+|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++..
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL 382 (754)
T ss_pred cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC
Confidence 4555555555555 3444332 44555555555554 3444332 3445555555554433
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.81 E-value=5.5e-05 Score=67.18 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=58.5
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~ 82 (163)
+.+|+.|++++|++. .+|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|. ...+.+|+.++
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 356777777777777 6777777788888888877654446664 66778888888887654444443 36677777777
Q ss_pred ccCCCCCCC
Q 031242 83 YEGNKGLYG 91 (163)
Q Consensus 83 ~~~n~~lc~ 91 (163)
+.++..+-.
T Consensus 688 L~~c~~L~~ 696 (1153)
T PLN03210 688 MSRCENLEI 696 (1153)
T ss_pred CCCCCCcCc
Confidence 777654433
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.74 E-value=5.5e-06 Score=66.92 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=70.8
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
+++..|+.+||+.|+++ .+|..+-.++ |+.|-+++|+++ .+|..++.+..|..||.+.|++...++....+.+++.+
T Consensus 118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence 46788999999999999 8998877776 789999999999 99999999999999999999999888877777777666
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
.+..|
T Consensus 195 ~vrRn 199 (722)
T KOG0532|consen 195 NVRRN 199 (722)
T ss_pred HHhhh
Confidence 66555
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=2.3e-05 Score=62.16 Aligned_cols=81 Identities=30% Similarity=0.358 Sum_probs=45.4
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
+.+++|+.|++.+|++. .+...+..+++|++|+++.|.|+...+ +..++.|+.|++++|.++.. .....+..+..+
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI-SGLESLKSLKLL 167 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc-cCCccchhhhcc
Confidence 34566667777777776 444435566777777777777663222 34455566666666666632 222234444444
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++++|
T Consensus 168 ~l~~n 172 (414)
T KOG0531|consen 168 DLSYN 172 (414)
T ss_pred cCCcc
Confidence 44444
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=3.8e-05 Score=54.66 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC--CCCcccCCCCcc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFSPT 81 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l~~l 81 (163)
+.+...+||++|.+. .++ .|..++.|.+|.+..|.|+..-|.--.-+++|+.|.+.+|.|.... .....++.|+.+
T Consensus 41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 346678899999887 443 3677888999999999999555654445677999999999887443 233567788888
Q ss_pred cccCCCC
Q 031242 82 SYEGNKG 88 (163)
Q Consensus 82 ~~~~n~~ 88 (163)
++.+|+-
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 8888874
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=4.5e-06 Score=56.06 Aligned_cols=64 Identities=25% Similarity=0.396 Sum_probs=57.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~ 69 (163)
++.++.+++++|.++ .+|.++..++.|+.|+++.|.+. ..|.-+..+.++..|+..+|.+..++
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence 456788999999999 99999999999999999999999 88998888999999999999887443
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.67 E-value=6.1e-06 Score=62.61 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=6.9
Q ss_pred CCCcccccccCcccc
Q 031242 52 LNFLSVLNLSYNNLV 66 (163)
Q Consensus 52 l~~L~~L~l~~N~l~ 66 (163)
.++|+.|++++|.+.
T Consensus 192 ~~~L~~L~L~~n~i~ 206 (319)
T cd00116 192 NCNLEVLDLNNNGLT 206 (319)
T ss_pred CCCCCEEeccCCccC
Confidence 334444444444443
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.56 E-value=7e-06 Score=62.28 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=15.7
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcc---cceeccccccCC
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQ---IESLDLSMNNLS 42 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~ls~N~l~ 42 (163)
++|+.|++++|.+.+..+..+..+.+ |++|++++|.++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 34444444444444333333332222 444444444443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=6.3e-06 Score=68.44 Aligned_cols=77 Identities=31% Similarity=0.362 Sum_probs=33.0
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccC
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG 85 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~ 85 (163)
.++.|||+.|+++ ... .+..+++|.+||++.|.+. .+|.--..--.|+.|++++|.++.. -...++.+|..++++.
T Consensus 188 ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 188 ALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSY 263 (1096)
T ss_pred Hhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhH
Confidence 3444455555444 222 3444444555555555444 3333211111244444555444421 1223455555555555
Q ss_pred C
Q 031242 86 N 86 (163)
Q Consensus 86 n 86 (163)
|
T Consensus 264 N 264 (1096)
T KOG1859|consen 264 N 264 (1096)
T ss_pred h
Confidence 5
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.47 E-value=5.7e-05 Score=65.09 Aligned_cols=88 Identities=26% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCCCeEEccCCC--CCCCCCcc-cCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242 4 FKSLYALNMSHNA--LTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (163)
Q Consensus 4 l~~L~~L~Ls~N~--l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~ 80 (163)
.+.|++|-+..|. +. .++.. |..++.|+.||+++|.=-+.+|..++++-+|++|++++..++..|+....++.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 4568888888886 55 55544 77899999999999876669999999999999999999999988888888999999
Q ss_pred ccccCCCCCCCC
Q 031242 81 TSYEGNKGLYGP 92 (163)
Q Consensus 81 l~~~~n~~lc~~ 92 (163)
+++..+..+...
T Consensus 623 Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 623 LNLEVTGRLESI 634 (889)
T ss_pred eccccccccccc
Confidence 988776654443
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.04 E-value=0.00017 Score=32.74 Aligned_cols=19 Identities=63% Similarity=0.781 Sum_probs=9.5
Q ss_pred CCeEEccCCCCCCCCCcccC
Q 031242 7 LYALNMSHNALTGSIPSSFG 26 (163)
Q Consensus 7 L~~L~Ls~N~l~~~~p~~~~ 26 (163)
|++||+++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444433
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.02 E-value=0.00017 Score=57.25 Aligned_cols=81 Identities=33% Similarity=0.445 Sum_probs=64.2
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+..++.+++..|.+. .+-..+..+.+|..+++.+|.+. .+...+..+++|++|++++|.|+...+ ...+..|..+++
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 456667778888888 44455788999999999999999 555546789999999999999996543 345566888889
Q ss_pred cCCC
Q 031242 84 EGNK 87 (163)
Q Consensus 84 ~~n~ 87 (163)
.+|+
T Consensus 148 ~~N~ 151 (414)
T KOG0531|consen 148 SGNL 151 (414)
T ss_pred ccCc
Confidence 9985
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.00079 Score=48.11 Aligned_cols=84 Identities=23% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCc--hhhcCCCCcccccccCccccCcCCC----Ccc
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSYNNLVGKIPT----STQ 74 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----~~~ 74 (163)
|..++.|+.|.+++|+|+..-|.--.-++.|..|.+.+|.+. .+- ..+..++.|+.|.+-+|+.+...-- ...
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 456888999999999999444443445678999999999987 332 2356778999999999987643211 134
Q ss_pred cCCCCcccccC
Q 031242 75 LQSFSPTSYEG 85 (163)
Q Consensus 75 l~~l~~l~~~~ 85 (163)
+++++.+++.+
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 56667777654
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00068 Score=49.94 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCCCCCeEEccCC--CCCCCCCcccCCCcccceeccccccCCCcCchh---hcCCCCcccccccCcccc
Q 031242 3 QFKSLYALNMSHN--ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ---LASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 3 ~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~---~~~l~~L~~L~l~~N~l~ 66 (163)
.|++|+.|.+|.| ++.+.++.....+++|+++++++|++.- +++ ...+.+|..|++.+|.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 4555666666666 4444444444445666666666666541 222 233445555565555444
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00076 Score=49.72 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=53.8
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccc--cCCCcCchhhcCCCCcccccccCccccC--cCCCCcccCCCCc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN--NLSGKIPSQLASLNFLSVLNLSYNNLVG--KIPTSTQLQSFSP 80 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~l~~l~~ 80 (163)
..|+.+.+.+-.++ ++ ..+..|++|+.|+++.| ..++.++.....+++|++++++.|++.- .++....+.+|..
T Consensus 43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 34555555555555 22 34667899999999999 7777777666677999999999999873 2222344555555
Q ss_pred ccccCC
Q 031242 81 TSYEGN 86 (163)
Q Consensus 81 l~~~~n 86 (163)
+++..+
T Consensus 121 Ldl~n~ 126 (260)
T KOG2739|consen 121 LDLFNC 126 (260)
T ss_pred hhcccC
Confidence 555433
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.82 E-value=0.00038 Score=31.55 Aligned_cols=21 Identities=52% Similarity=0.759 Sum_probs=14.9
Q ss_pred ccceeccccccCCCcCchhhcC
Q 031242 30 QIESLDLSMNNLSGKIPSQLAS 51 (163)
Q Consensus 30 ~L~~L~ls~N~l~g~~p~~~~~ 51 (163)
+|++||+++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677788888777 77766544
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00063 Score=53.67 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCCeEEccCCCCCCCCC--cccCCCcccceeccccccCCCc-Cchh-----hcCCCCcccccccCcccc
Q 031242 5 KSLYALNMSHNALTGSIP--SSFGNLKQIESLDLSMNNLSGK-IPSQ-----LASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~g~-~p~~-----~~~l~~L~~L~l~~N~l~ 66 (163)
..|++|||++|.+- ..+ ...+.++.|+.|+++.+.+... .|+. ...+++|+.|++..|++.
T Consensus 246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 34555555555544 333 3344555555555555555421 2222 234556666666666553
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00062 Score=53.70 Aligned_cols=85 Identities=26% Similarity=0.267 Sum_probs=54.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCc--hhhcCCCCcccccccCccccCcC-CCC------c
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSYNNLVGKI-PTS------T 73 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L~l~~N~l~~~~-p~~------~ 73 (163)
.+++|+.|+|+.|...+.-......+..|+.|||++|++- ..+ ...+.++.|..|+++.+.+...- |+. .
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 4677778888887532233334456777888888888776 444 34667788888888888776432 222 3
Q ss_pred ccCCCCcccccCCCC
Q 031242 74 QLQSFSPTSYEGNKG 88 (163)
Q Consensus 74 ~l~~l~~l~~~~n~~ 88 (163)
.+.+++.+....|+.
T Consensus 299 ~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 299 TFPKLEYLNISENNI 313 (505)
T ss_pred ccccceeeecccCcc
Confidence 456666666666643
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.08 E-value=0.0037 Score=26.39 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=5.9
Q ss_pred CCCeEEccCCCCC
Q 031242 6 SLYALNMSHNALT 18 (163)
Q Consensus 6 ~L~~L~Ls~N~l~ 18 (163)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666655
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.0018 Score=48.67 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=50.8
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCch--hhcCCCCcccccccCccccCcCC
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPS--QLASLNFLSVLNLSYNNLVGKIP 70 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~l~~L~~L~l~~N~l~~~~p 70 (163)
+++.|++|.||-|+++..-| +..++.|+.|+|..|.|. .+-+ -+.++++|+.|.+..|.-.|.-+
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 57889999999999994333 568899999999999887 4432 36788999999999998765543
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.0072 Score=45.93 Aligned_cols=62 Identities=34% Similarity=0.319 Sum_probs=27.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCc-CchhhcCCCCcccccccCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPSQLASLNFLSVLNLSYNN 64 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~ 64 (163)
+|+.|++|+++.|++...+...-..+.+|+.|-|.+..+... ....+..++.++.++++.|.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 344555555555555433222212334444444444433321 11223445555666666663
No 56
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.68 E-value=0.00049 Score=50.37 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=27.2
Q ss_pred eEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242 9 ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65 (163)
Q Consensus 9 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 65 (163)
.||++.|.+. ..|..++++..+..+++..|.++ ..|.++...+.++.++...|.+
T Consensus 69 rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 69 RLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 3444444444 44444455555555555555554 4555555555555555554443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.0025 Score=48.39 Aligned_cols=62 Identities=29% Similarity=0.369 Sum_probs=41.4
Q ss_pred CCCCCeEEccCCCCCC--CCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242 4 FKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 65 (163)
.+.++++||.+|.++. .+-..+.++++|++|+++.|+++..+-..-..+.+|+++-+.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 4567788888888873 2344567888888888888888743322213556777777666544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.28 E-value=0.015 Score=49.33 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=28.0
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCC-cCchhhcCCCCcccccccCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYNN 64 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~ 64 (163)
++++|..||+|+-+++ .+ .++++|++|+.|.+.+=.+.. ..-..+.++++|++||+|...
T Consensus 171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 3455555555555554 22 444555555555444433321 111234455566666665543
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.07 E-value=0.021 Score=26.65 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=9.5
Q ss_pred CCCCeEEccCCCCCCCCCc
Q 031242 5 KSLYALNMSHNALTGSIPS 23 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~ 23 (163)
++|+.|+|++|+++ .+|+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45555555555555 4443
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.07 E-value=0.021 Score=26.65 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=9.5
Q ss_pred CCCCeEEccCCCCCCCCCc
Q 031242 5 KSLYALNMSHNALTGSIPS 23 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~ 23 (163)
++|+.|+|++|+++ .+|+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45555555555555 4443
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.75 E-value=0.025 Score=26.36 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=12.5
Q ss_pred CcccceeccccccCCCcCchh
Q 031242 28 LKQIESLDLSMNNLSGKIPSQ 48 (163)
Q Consensus 28 l~~L~~L~ls~N~l~g~~p~~ 48 (163)
+++|++|++++|.++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 345667777777776 55544
No 62
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.75 E-value=0.025 Score=26.36 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=12.5
Q ss_pred CcccceeccccccCCCcCchh
Q 031242 28 LKQIESLDLSMNNLSGKIPSQ 48 (163)
Q Consensus 28 l~~L~~L~ls~N~l~g~~p~~ 48 (163)
+++|++|++++|.++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 345667777777776 55544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.44 E-value=0.06 Score=42.89 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
+.+++.|++++|.++ .+|. -..+|+.|.+++ +.++ .+|+.+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 567888888888877 6662 223567777765 4444 5554432 35555666555
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.14 E-value=0.022 Score=48.33 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=49.6
Q ss_pred CCCCCeEEccCCCCCC-CCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc--CCCCcccCCCCc
Q 031242 4 FKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK--IPTSTQLQSFSP 80 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~l~~l~~ 80 (163)
||.|+.|.+++-.+.. ..-....++++|..||+|+.+++ .+ ..++.+++|+.|.+.+=.+..- +-+...+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 6667777766655532 22344456777777788777776 33 5567777777776665444321 112355777777
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
++++...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 7776543
No 65
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=94.00 E-value=0.14 Score=32.27 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=25.9
Q ss_pred eeehhhhHHhHHHHHHHHHhhhhHHHHHHHHHHhHhcee
Q 031242 122 IAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRR 160 (163)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (163)
+...+|+++++++..+++++..+...||+-+..+.++++
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRL 55 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccC
Confidence 444556655555555555666677888888888877664
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.82 E-value=0.0017 Score=47.58 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
.+...++||++.|++. .+-..+.-++.+..||++.|++. ..|..+.++..+..+++.+|..+..|-...+.+.+..+.
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 4566788999999988 77777888999999999999999 899999999999999999999887666666777776666
Q ss_pred ccCCC
Q 031242 83 YEGNK 87 (163)
Q Consensus 83 ~~~n~ 87 (163)
.-+|+
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 66654
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.40 E-value=0.037 Score=42.76 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcCchhh-----cCCCCcccccccCccccCcCC----
Q 031242 4 FKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPSQL-----ASLNFLSVLNLSYNNLVGKIP---- 70 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-----~~l~~L~~L~l~~N~l~~~~p---- 70 (163)
+++|++|||..|.|+-. +...+..+++|+.+++++..+...--..+ ...++|+.+++++|.++.---
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 44555555555555421 12233444555555555554432211111 123455555555555541100
Q ss_pred -CCcccCCCCcccccCCCC
Q 031242 71 -TSTQLQSFSPTSYEGNKG 88 (163)
Q Consensus 71 -~~~~l~~l~~l~~~~n~~ 88 (163)
.....+.|..+.+++|..
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 012244555566666643
No 68
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.71 E-value=0.18 Score=26.31 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=8.6
Q ss_pred eeehhhhHHhHHHHHHHHH
Q 031242 122 IAMSIGFAVGFGAVVSPLM 140 (163)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~ 140 (163)
.++++.+++++.++..+++
T Consensus 15 ~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEechHHHHHHHHHHhh
Confidence 3444554444444444444
No 69
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.38 E-value=0.14 Score=24.04 Aligned_cols=17 Identities=59% Similarity=0.780 Sum_probs=9.1
Q ss_pred CCCeEEccCCCCCCCCCc
Q 031242 6 SLYALNMSHNALTGSIPS 23 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~ 23 (163)
+|+.|+.++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555555555555 4443
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.79 E-value=0.28 Score=39.20 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=16.1
Q ss_pred CCCeEEccC-CCCCCCCCcccCCCcccceeccccc
Q 031242 6 SLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMN 39 (163)
Q Consensus 6 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N 39 (163)
+|+.|.+++ +.++ .+|..+ ..+|+.|++++|
T Consensus 73 sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence 466666665 3444 455433 235555555554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=0.011 Score=44.52 Aligned_cols=80 Identities=25% Similarity=0.227 Sum_probs=60.2
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC--CcccCCCCcc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT--STQLQSFSPT 81 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~l~~l~~l 81 (163)
+.+.+.|+.-++.++ .+ +....++.|+.|.||-|+++..-| +..+++|+.|.|..|.|...-.- ...+++|+.+
T Consensus 18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445667777777777 43 234678999999999999984333 56889999999999998754321 2567788889
Q ss_pred cccCCC
Q 031242 82 SYEGNK 87 (163)
Q Consensus 82 ~~~~n~ 87 (163)
.+..||
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 998887
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.70 E-value=0.066 Score=41.45 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=18.9
Q ss_pred cCCCcccceeccccccCCCc----CchhhcCCCCcccccccCcccc
Q 031242 25 FGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 25 ~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~ 66 (163)
+..+++|+.||+.+|.++-. +-..+..+++|+.++++++.++
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 34445555555555554421 1112334445555555554443
No 73
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=90.65 E-value=0.12 Score=33.98 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=14.7
Q ss_pred eeeeehhhhHHhHHHHHHHHHhhhh
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFSVQ 144 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
.++++++|+++++++++++++|+.+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHH
Confidence 4556667777766666655554433
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.95 E-value=0.3 Score=22.96 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=8.6
Q ss_pred CCCCeEEccCCCCC
Q 031242 5 KSLYALNMSHNALT 18 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (163)
++|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.39 E-value=0.63 Score=30.14 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++.+|+.+.+.. .+...-...|.+.++|+.+.+.++ +...-...|....+++.+++.+ .+....... .....+..
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4566788888774 455333355777878888888775 5523334567776788888865 332222222 23455555
Q ss_pred cccc
Q 031242 81 TSYE 84 (163)
Q Consensus 81 l~~~ 84 (163)
+.+.
T Consensus 86 i~~~ 89 (129)
T PF13306_consen 86 IDIP 89 (129)
T ss_dssp EEET
T ss_pred cccC
Confidence 5553
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.73 E-value=0.18 Score=22.88 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=5.5
Q ss_pred CCCCeEEccCCCCC
Q 031242 5 KSLYALNMSHNALT 18 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (163)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444555444443
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.81 E-value=0.47 Score=22.50 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=8.1
Q ss_pred CCCCeEEccCCCCC
Q 031242 5 KSLYALNMSHNALT 18 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (163)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.39 E-value=0.82 Score=29.58 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=37.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
.++++|+.+.+..+ +...-...|.+..+++.+.+.+ .+...-...|...++++.+++..+
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 45678999999875 6623335677888899999976 444233445677899999988765
No 79
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=86.76 E-value=0.46 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=11.5
Q ss_pred eeeeehhhhHHhHHHHHHHHH
Q 031242 120 FFIAMSIGFAVGFGAVVSPLM 140 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~ 140 (163)
.++++++++++++++++++++
T Consensus 67 aiagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHh
Confidence 456666666655554444443
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.69 E-value=0.5 Score=35.85 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCCCCCeEEccCCCCCCCCCccc----CCCcccceeccccccCC
Q 031242 3 QFKSLYALNMSHNALTGSIPSSF----GNLKQIESLDLSMNNLS 42 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~ 42 (163)
+|++|+..+||.|.+....|+.+ +.-+.|.+|.+++|.+-
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 68899999999999988777654 45577899999998764
No 81
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=85.54 E-value=0.49 Score=31.13 Aligned_cols=29 Identities=7% Similarity=0.239 Sum_probs=0.0
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhhhhHHH
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFSVQVNK 147 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (163)
|.+...+.+++++++++.++++++|.+|+
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRCRRR 107 (129)
T ss_dssp -----------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44444455555556665666666655554
No 82
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=83.62 E-value=1.1 Score=27.92 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=14.5
Q ss_pred ceeeeeehhhhHHhHHHHHHHHHhhhhH
Q 031242 118 DWFFIAMSIGFAVGFGAVVSPLMFSVQV 145 (163)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (163)
.|.+++.+-|++++++++.++++|+.+|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 4666666655555555444444444444
No 83
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=83.26 E-value=0.69 Score=31.56 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=5.9
Q ss_pred eeeeehhhhHH
Q 031242 120 FFIAMSIGFAV 130 (163)
Q Consensus 120 ~~~~~~~~~~~ 130 (163)
.++++++|+.+
T Consensus 50 IVIGvVVGVGg 60 (154)
T PF04478_consen 50 IVIGVVVGVGG 60 (154)
T ss_pred EEEEEEecccH
Confidence 45666655433
No 84
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=78.41 E-value=1.1 Score=22.93 Aligned_cols=9 Identities=33% Similarity=0.626 Sum_probs=3.6
Q ss_pred eehhhhHHh
Q 031242 123 AMSIGFAVG 131 (163)
Q Consensus 123 ~~~~~~~~~ 131 (163)
+++++++++
T Consensus 7 aIIv~V~vg 15 (38)
T PF02439_consen 7 AIIVAVVVG 15 (38)
T ss_pred hHHHHHHHH
Confidence 334444333
No 85
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.25 E-value=0.73 Score=35.45 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCCeEEccCCC---CCCCCCcccCCCcccceeccccc-cCCCcCchhhcCCCCcccccccCccccCcCCCC----cccCC
Q 031242 6 SLYALNMSHNA---LTGSIPSSFGNLKQIESLDLSMN-NLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS----TQLQS 77 (163)
Q Consensus 6 ~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~----~~l~~ 77 (163)
+|+.|++++.. ...++..-....++|.+||||+| .++...-.+|.+++.|+++.++.++ +++|.. ...++
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcc
Confidence 45666776643 11122223346778888888865 4543344557778888888777665 345543 33455
Q ss_pred CCcccccC
Q 031242 78 FSPTSYEG 85 (163)
Q Consensus 78 l~~l~~~~ 85 (163)
+..++..|
T Consensus 365 l~yLdv~g 372 (419)
T KOG2120|consen 365 LVYLDVFG 372 (419)
T ss_pred eEEEEecc
Confidence 55555443
No 86
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=76.51 E-value=6.7 Score=28.43 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=12.4
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhh
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
..+++++.|++.++++++++.++|
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHH
Confidence 345555555555555444444444
No 87
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=74.84 E-value=3.2 Score=31.82 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=6.7
Q ss_pred hHHHHHHHHHhhhhH
Q 031242 131 GFGAVVSPLMFSVQV 145 (163)
Q Consensus 131 ~~~~~~~~~~~~~~~ 145 (163)
+++++++.+++|.||
T Consensus 269 VLIMvIIYLILRYRR 283 (299)
T PF02009_consen 269 VLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444455444
No 88
>PTZ00370 STEVOR; Provisional
Probab=74.83 E-value=1.4 Score=33.27 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=5.6
Q ss_pred HHHhhhhHHHH
Q 031242 138 PLMFSVQVNKW 148 (163)
Q Consensus 138 ~~~~~~~~~~~ 148 (163)
.|+++||++.|
T Consensus 276 iwlyrrRK~sw 286 (296)
T PTZ00370 276 IWLYRRRKNSW 286 (296)
T ss_pred HHHHHhhcchh
Confidence 34445555555
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.28 E-value=1.8 Score=42.09 Aligned_cols=33 Identities=33% Similarity=0.230 Sum_probs=25.9
Q ss_pred ccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242 35 DLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 35 ~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
||++|+|+..-+..|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999994444567888899999999987763
No 90
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=74.16 E-value=2.2 Score=32.52 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=11.7
Q ss_pred CCCCCeEEccCCCCCC
Q 031242 4 FKSLYALNMSHNALTG 19 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~ 19 (163)
+..+..++||+|.+..
T Consensus 29 ~d~~~evdLSGNtigt 44 (388)
T COG5238 29 MDELVEVDLSGNTIGT 44 (388)
T ss_pred hcceeEEeccCCcccH
Confidence 4567788888888763
No 91
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=72.43 E-value=1.5 Score=33.11 Aligned_cols=10 Identities=10% Similarity=0.664 Sum_probs=4.3
Q ss_pred HHhhhhHHHH
Q 031242 139 LMFSVQVNKW 148 (163)
Q Consensus 139 ~~~~~~~~~~ 148 (163)
|+++||++.|
T Consensus 281 WlyrrRK~sw 290 (295)
T TIGR01478 281 WLYRRRKKSW 290 (295)
T ss_pred HHHHhhcccc
Confidence 3344444444
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=72.11 E-value=0.21 Score=38.27 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccc-cCCC-cCchhhcCCCCcccccccCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN-NLSG-KIPSQLASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N-~l~g-~~p~~~~~l~~L~~L~l~~N~l~ 66 (163)
+.+|+.|.+.++++...+-..+..=..|+.|+++.. .++. ...--+.+++.|+.|+++.+.+.
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 455666666666666555455555556666666543 2220 01112455666777777776554
No 93
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=70.85 E-value=1.2 Score=28.70 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhH
Q 031242 143 VQVNKWYNDLIYKF 156 (163)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (163)
.++|.-|....+|.
T Consensus 47 ckRRSGYk~L~~k~ 60 (118)
T PF14991_consen 47 CKRRSGYKTLRDKS 60 (118)
T ss_dssp --------------
T ss_pred eeecchhhhhhhcc
Confidence 35566677777664
No 94
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=70.30 E-value=12 Score=19.54 Aligned_cols=7 Identities=14% Similarity=0.078 Sum_probs=2.7
Q ss_pred HHhhhhH
Q 031242 139 LMFSVQV 145 (163)
Q Consensus 139 ~~~~~~~ 145 (163)
.+.+|+|
T Consensus 27 ~~iYRKw 33 (43)
T PF08114_consen 27 LFIYRKW 33 (43)
T ss_pred HHHHHHH
Confidence 3333344
No 95
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=69.56 E-value=3.3 Score=33.07 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.8
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhh
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
..+++|.|+++++|+.++.++.||
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhh
Confidence 356777788788888788777665
No 96
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=69.32 E-value=9.6 Score=24.14 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=21.5
Q ss_pred cceeeeeehhhhHHhHHHHHHHHHhhhhHHHHH
Q 031242 117 IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWY 149 (163)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (163)
..|.+++.++..++++-++|++.+-|..|++.+
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~ 47 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYKYL 47 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 357777777777777666666666665665553
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.16 E-value=2.3 Score=35.14 Aligned_cols=34 Identities=38% Similarity=0.306 Sum_probs=15.6
Q ss_pred cccceeccccccCCCcCc---hhhcCCCCcccccccCc
Q 031242 29 KQIESLDLSMNNLSGKIP---SQLASLNFLSVLNLSYN 63 (163)
Q Consensus 29 ~~L~~L~ls~N~l~g~~p---~~~~~l~~L~~L~l~~N 63 (163)
+.+..+.|++|++. .+- .--...++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 44445555555554 111 11123455666666666
No 98
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=69.01 E-value=1.6 Score=33.26 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=0.0
Q ss_pred eeeeehhhhHHhHHHHHHHHHhh
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
.+.+++++++++++++++.++++
T Consensus 149 ~IpaVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 149 FIPAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444444444
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.57 E-value=2.4 Score=35.04 Aligned_cols=63 Identities=30% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCCCCCeEEccCCCCCCCCC---cccCCCcccceeccccc--cCCCcCchhhcC--CCCcccccccCccccCc
Q 031242 3 QFKSLYALNMSHNALTGSIP---SSFGNLKQIESLDLSMN--NLSGKIPSQLAS--LNFLSVLNLSYNNLVGK 68 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~--l~~L~~L~l~~N~l~~~ 68 (163)
+.+.+..++|++|++. .+. .--...+.|..|+|++| .+. .. .++.+ ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-SE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-ch-hhhhhhcCCCHHHeeecCCccccc
Confidence 4567788999999987 332 22234688999999999 443 21 12222 23467777777777543
No 100
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=63.24 E-value=1.9 Score=25.86 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=6.5
Q ss_pred hhhHHhHHHHHHHHHhh
Q 031242 126 IGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 126 ~~~~~~~~~~~~~~~~~ 142 (163)
+|+++++++++++++++
T Consensus 8 ~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 8 VGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhheeEEEEE
Confidence 33333334343433333
No 101
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.67 E-value=4.1 Score=26.87 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=11.6
Q ss_pred ehhhhHHhHHHHHHHHHhhhhHH
Q 031242 124 MSIGFAVGFGAVVSPLMFSVQVN 146 (163)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (163)
.+++.++++++++.+++.|++++
T Consensus 72 gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333455555666666666655
No 102
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=61.37 E-value=2.5 Score=24.41 Aligned_cols=6 Identities=33% Similarity=0.158 Sum_probs=0.0
Q ss_pred eehhhh
Q 031242 123 AMSIGF 128 (163)
Q Consensus 123 ~~~~~~ 128 (163)
+++.|.
T Consensus 13 avIaG~ 18 (64)
T PF01034_consen 13 AVIAGG 18 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 103
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.83 E-value=1.6 Score=31.57 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=26.3
Q ss_pred CeEEccCCCCCCCCCcccCCCcccceeccccccCCC-cCchhhc-CCCCcccccccCc
Q 031242 8 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLA-SLNFLSVLNLSYN 63 (163)
Q Consensus 8 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~-~l~~L~~L~l~~N 63 (163)
+.+|-++..+.+.=-+.+.+++.++.|.+.+..--+ ..-+-++ -.++|+.|+++.|
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 456666666553222334455555555554432110 0000111 3467777777765
No 104
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=59.42 E-value=5.5 Score=27.28 Aligned_cols=27 Identities=0% Similarity=-0.196 Sum_probs=12.1
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhhhhHH
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFSVQVN 146 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (163)
...+++++++++ +++++++++|+|++|
T Consensus 53 GvVVGVGg~ill-~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 53 GVVVGVGGPILL-GILALVFIFCIRRKK 79 (154)
T ss_pred EEEecccHHHHH-HHHHhheeEEEeccc
Confidence 344555554443 343444444444433
No 105
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=59.24 E-value=14 Score=26.66 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=10.0
Q ss_pred hhhhHHhHHHHHHHHHhhhhHHHH
Q 031242 125 SIGFAVGFGAVVSPLMFSVQVNKW 148 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (163)
+.|.++++++++.+.+|+..||.|
T Consensus 107 ~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 107 TSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HhhHHHHHHHHHHHHHHhhhhccC
Confidence 344334444444443444343433
No 106
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=59.07 E-value=5.8 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=14.9
Q ss_pred ceeeeeehhhhHHhHHHHHHHHHhh
Q 031242 118 DWFFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
.+..+++++.+++++++++++.++.
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhhe
Confidence 3456677777766665555554444
No 107
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=58.70 E-value=19 Score=25.63 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=9.9
Q ss_pred hhhhHHhHHHHHHHHHhhhhH
Q 031242 125 SIGFAVGFGAVVSPLMFSVQV 145 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ 145 (163)
+-|+++.+++..++++.+|++
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhc
Confidence 334444455444445545444
No 108
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.62 E-value=5.8 Score=38.97 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.2
Q ss_pred EccCCCCCCCCC-cccCCCcccceeccccccCCCc
Q 031242 11 NMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGK 44 (163)
Q Consensus 11 ~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~ 44 (163)
||++|+|+ .+| ..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccccc
Confidence 68999999 555 5688899999999999987543
No 109
>PTZ00046 rifin; Provisional
Probab=56.84 E-value=9 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhHHH
Q 031242 132 FGAVVSPLMFSVQVNK 147 (163)
Q Consensus 132 ~~~~~~~~~~~~~~~~ 147 (163)
+++++..++.|.||++
T Consensus 329 LIMvIIYLILRYRRKK 344 (358)
T PTZ00046 329 LIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3444444555544443
No 110
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=56.65 E-value=4.2 Score=31.16 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=8.2
Q ss_pred eeeeehhhhHHhHHHHHH
Q 031242 120 FFIAMSIGFAVGFGAVVS 137 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~ 137 (163)
.++-+++|++++.+++++
T Consensus 271 ~~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIV 288 (306)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344455565544333333
No 111
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=55.96 E-value=16 Score=30.95 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=8.8
Q ss_pred cceeeeeehhhhHHh
Q 031242 117 IDWFFIAMSIGFAVG 131 (163)
Q Consensus 117 ~~~~~~~~~~~~~~~ 131 (163)
..|+++++++.++++
T Consensus 268 NlWII~gVlvPv~vV 282 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVV 282 (684)
T ss_pred CeEEEehHhHHHHHH
Confidence 347766666555444
No 112
>PF15102 TMEM154: TMEM154 protein family
Probab=54.19 E-value=8.8 Score=26.11 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=16.2
Q ss_pred eeeehhhhHHhHHHHHHHHHhhhhHHHHH
Q 031242 121 FIAMSIGFAVGFGAVVSPLMFSVQVNKWY 149 (163)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (163)
++.+++..++++++++.+++...+.|+|-
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 44455555555555555566666665543
No 113
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=54.19 E-value=11 Score=29.58 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhhHH
Q 031242 132 FGAVVSPLMFSVQVN 146 (163)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (163)
+++++..++.|.||+
T Consensus 324 LIMvIIYLILRYRRK 338 (353)
T TIGR01477 324 LIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHhhhc
Confidence 333444444554444
No 114
>PRK10132 hypothetical protein; Provisional
Probab=53.83 E-value=11 Score=24.21 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=11.7
Q ss_pred hhhhHHhHHHHHHHHHhhh
Q 031242 125 SIGFAVGFGAVVSPLMFSV 143 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (163)
.+|+++++++++++++.+|
T Consensus 89 svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 89 SVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4455666777777766553
No 115
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=51.64 E-value=4.9 Score=32.55 Aligned_cols=7 Identities=0% Similarity=-0.187 Sum_probs=0.0
Q ss_pred hhHHHHH
Q 031242 143 VQVNKWY 149 (163)
Q Consensus 143 ~~~~~~~ 149 (163)
+++|.++
T Consensus 379 rrrR~~~ 385 (439)
T PF02480_consen 379 RRRRRQR 385 (439)
T ss_dssp -------
T ss_pred hhccccc
Confidence 3333333
No 116
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.07 E-value=17 Score=22.43 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhhhHHH
Q 031242 132 FGAVVSPLMFSVQVNK 147 (163)
Q Consensus 132 ~~~~~~~~~~~~~~~~ 147 (163)
+.++++.++||++|++
T Consensus 45 il~VilwfvCC~kRkr 60 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKR 60 (94)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3445555566655443
No 117
>PF15345 TMEM51: Transmembrane protein 51
Probab=47.83 E-value=87 Score=23.15 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=2.5
Q ss_pred eeeeeh
Q 031242 120 FFIAMS 125 (163)
Q Consensus 120 ~~~~~~ 125 (163)
+.++++
T Consensus 58 ~SVAyV 63 (233)
T PF15345_consen 58 FSVAYV 63 (233)
T ss_pred EEEEEe
Confidence 334444
No 118
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=47.46 E-value=17 Score=21.25 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=12.1
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhh
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
|..++++.+++++++..+.-+.|+
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK 56 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFK 56 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhh
Confidence 555555555555555455444444
No 119
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=47.31 E-value=30 Score=23.31 Aligned_cols=12 Identities=8% Similarity=-0.086 Sum_probs=4.9
Q ss_pred hhhHHHHHHHHH
Q 031242 142 SVQVNKWYNDLI 153 (163)
Q Consensus 142 ~~~~~~~~~~~~ 153 (163)
+++++.+|.+.-
T Consensus 43 r~~~~~~yrr~A 54 (146)
T PF14316_consen 43 RRWRRNRYRREA 54 (146)
T ss_pred HHHHccHHHHHH
Confidence 333333455443
No 120
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=45.35 E-value=7 Score=31.67 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred eeeeehhhhHHhHHHHHHHHHhhhhHHHHHHHH
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDL 152 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (163)
.++++++|+++++++++++++++.+++.+..+.
T Consensus 353 ~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp ---------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHhheeeeehhccccc
Confidence 344455566666666666666666666554433
No 121
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=45.32 E-value=20 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=9.2
Q ss_pred HHhHHHHHHHHHhhhhHHHH
Q 031242 129 AVGFGAVVSPLMFSVQVNKW 148 (163)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ 148 (163)
+++++++++..++...|+.|
T Consensus 125 i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444
No 122
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.27 E-value=16 Score=16.52 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=5.7
Q ss_pred CCCCeEEccCC
Q 031242 5 KSLYALNMSHN 15 (163)
Q Consensus 5 ~~L~~L~Ls~N 15 (163)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 123
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.98 E-value=41 Score=20.77 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=8.6
Q ss_pred hhHHhHHHHHHHHHhhhhH
Q 031242 127 GFAVGFGAVVSPLMFSVQV 145 (163)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (163)
++++++++++++.++++-+
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444554444
No 124
>PRK10404 hypothetical protein; Provisional
Probab=42.05 E-value=23 Score=22.46 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=10.4
Q ss_pred hhhhHHhHHHHHHHHHhh
Q 031242 125 SIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (163)
.+|+++++++++++++.+
T Consensus 83 avGiaagvGlllG~Ll~R 100 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLAR 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445556666666666544
No 125
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=41.47 E-value=36 Score=26.34 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=9.1
Q ss_pred ehhhhHHhHHHHHHHHH-hhhhH
Q 031242 124 MSIGFAVGFGAVVSPLM-FSVQV 145 (163)
Q Consensus 124 ~~~~~~~~~~~~~~~~~-~~~~~ 145 (163)
+++..++++++++++.+ |+|.|
T Consensus 203 Iv~~cvaG~aAliva~~cW~Rlq 225 (341)
T PF06809_consen 203 IVVCCVAGAAALIVAGYCWYRLQ 225 (341)
T ss_pred hHHHHHHHHHHHHHhhheEEEec
Confidence 33333444444444433 44443
No 126
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.52 E-value=32 Score=18.46 Aligned_cols=6 Identities=0% Similarity=0.180 Sum_probs=2.4
Q ss_pred HHhhhh
Q 031242 139 LMFSVQ 144 (163)
Q Consensus 139 ~~~~~~ 144 (163)
+.++++
T Consensus 28 w~~~~~ 33 (49)
T PF05545_consen 28 WAYRPR 33 (49)
T ss_pred HHHccc
Confidence 344433
No 127
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=40.39 E-value=40 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=13.0
Q ss_pred eeeeeehhhhHHhHHHHHHHHHh
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMF 141 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
..+.+++.|++++.+++.+++++
T Consensus 61 tAIaGIVfgiVfimgvva~i~ic 83 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVVAGIAIC 83 (155)
T ss_pred ceeeeeehhhHHHHHHHHHHHHH
Confidence 45666666666655555444443
No 128
>PRK01844 hypothetical protein; Provisional
Probab=39.92 E-value=43 Score=19.87 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 031242 132 FGAVVSPL 139 (163)
Q Consensus 132 ~~~~~~~~ 139 (163)
++++++++
T Consensus 16 ~G~~~Gff 23 (72)
T PRK01844 16 AGVALGFF 23 (72)
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=39.74 E-value=49 Score=24.13 Aligned_cols=27 Identities=15% Similarity=-0.084 Sum_probs=18.4
Q ss_pred CcceeeeeehhhhHHhHHHHHHHHHhh
Q 031242 116 EIDWFFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
.....+++.++++++++++++++-.|+
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 455666777777777766677777666
No 130
>PRK00523 hypothetical protein; Provisional
Probab=37.35 E-value=50 Score=19.62 Aligned_cols=6 Identities=17% Similarity=0.767 Sum_probs=2.1
Q ss_pred HHHHHH
Q 031242 132 FGAVVS 137 (163)
Q Consensus 132 ~~~~~~ 137 (163)
++++.+
T Consensus 17 ~G~~~G 22 (72)
T PRK00523 17 VGGIIG 22 (72)
T ss_pred HHHHHH
Confidence 333333
No 131
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.01 E-value=19 Score=19.77 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=10.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHh
Q 031242 135 VVSPLMFSVQVNKWYNDLIYK 155 (163)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (163)
++++.++-..++..|....++
T Consensus 15 lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 15 LLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHhhccccccccCC
Confidence 344444444555556555544
No 132
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=35.59 E-value=4.7 Score=30.90 Aligned_cols=31 Identities=6% Similarity=0.051 Sum_probs=17.5
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhhhhHHHHHH
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYN 150 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (163)
..+++++++ +++++++++.++.|||.+..|-
T Consensus 274 PIaVG~~La-~lvlivLiaYli~Rrr~~~gYq 304 (306)
T PF01299_consen 274 PIAVGAALA-GLVLIVLIAYLIGRRRSRAGYQ 304 (306)
T ss_pred HHHHHHHHH-HHHHHHHHhheeEecccccccc
Confidence 344555544 4455556677777766655553
No 133
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=33.92 E-value=19 Score=28.64 Aligned_cols=83 Identities=25% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCCCCeEEccCC-CCCCCCC----cccCCCcccceecccccc-CCCcCchhhcC-CCCcccccccCcc-ccCcC--CCCc
Q 031242 4 FKSLYALNMSHN-ALTGSIP----SSFGNLKQIESLDLSMNN-LSGKIPSQLAS-LNFLSVLNLSYNN-LVGKI--PTST 73 (163)
Q Consensus 4 l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~-l~~L~~L~l~~N~-l~~~~--p~~~ 73 (163)
+++|+.|+++++ ......+ .....+++|+.|+++... ++...-..+.. +++|+.|.+.++. ++... --..
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 456677777652 1111111 223345666777776655 33222222222 5566666655444 22111 0112
Q ss_pred ccCCCCcccccCC
Q 031242 74 QLQSFSPTSYEGN 86 (163)
Q Consensus 74 ~l~~l~~l~~~~n 86 (163)
.++.|+.+++.+.
T Consensus 293 ~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 RCPSLRELDLSGC 305 (482)
T ss_pred hcCcccEEeeecC
Confidence 3445666655544
No 134
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=33.91 E-value=73 Score=17.69 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=7.3
Q ss_pred eeeeehhhhHHhHHHH
Q 031242 120 FFIAMSIGFAVGFGAV 135 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~ 135 (163)
.+++.++|+++..+++
T Consensus 23 a~IGtalGvaisAgFL 38 (61)
T PF14986_consen 23 AIIGTALGVAISAGFL 38 (61)
T ss_pred eeehhHHHHHHHHHHH
Confidence 3444445554444433
No 135
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=33.47 E-value=20 Score=20.15 Aligned_cols=25 Identities=0% Similarity=-0.045 Sum_probs=15.6
Q ss_pred eeeeehhhhHHhHHHHHHHHHhhhh
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFSVQ 144 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
.+..+++.+++++++++++++|.+.
T Consensus 29 kv~tVVlP~l~~~~~~Ivv~vy~kT 53 (56)
T PF15012_consen 29 KVFTVVLPTLAAVFLFIVVFVYLKT 53 (56)
T ss_pred hheeEehhHHHHHHHHHhheeEEec
Confidence 3455666666677767766666543
No 136
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=33.24 E-value=32 Score=21.03 Aligned_cols=9 Identities=0% Similarity=0.298 Sum_probs=3.9
Q ss_pred HHHHhhhhH
Q 031242 137 SPLMFSVQV 145 (163)
Q Consensus 137 ~~~~~~~~~ 145 (163)
++++++.++
T Consensus 35 ~vvL~C~r~ 43 (87)
T PF11980_consen 35 GVVLYCHRF 43 (87)
T ss_pred HHHHhhhhh
Confidence 344444343
No 137
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=32.29 E-value=15 Score=25.43 Aligned_cols=31 Identities=10% Similarity=0.327 Sum_probs=0.0
Q ss_pred eeeeehhhhHHhHHHHHHHHHhh-hhHHHHHH
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFS-VQVNKWYN 150 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 150 (163)
.++++++|++++++++.+++++. |++.-+|.
T Consensus 130 tLVGIIVGVLlaIG~igGIIivvvRKmSGRys 161 (162)
T PF05808_consen 130 TLVGIIVGVLLAIGFIGGIIIVVVRKMSGRYS 161 (162)
T ss_dssp --------------------------------
T ss_pred eeeeehhhHHHHHHHHhheeeEEeehhccccC
Confidence 45666666666555444443332 34445553
No 138
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=31.92 E-value=1e+02 Score=17.58 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHh
Q 031242 143 VQVNKWYNDLIYK 155 (163)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (163)
+++-..|+.+++|
T Consensus 42 qrkt~~fY~~Lek 54 (63)
T PLN03155 42 QRKTRSFYDLLEK 54 (63)
T ss_pred HHHHHHHHHHHhc
Confidence 3444557888774
No 139
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=31.83 E-value=1.5e+02 Score=19.40 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=12.7
Q ss_pred eeeehhhh-HHhHHHHHHHH-HhhhhHHHHHH
Q 031242 121 FIAMSIGF-AVGFGAVVSPL-MFSVQVNKWYN 150 (163)
Q Consensus 121 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 150 (163)
.+..++|. ++++..++++. +.+|..|.|-.
T Consensus 85 aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 85 ALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 33444444443 33444444433
No 140
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.98 E-value=80 Score=21.55 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=3.6
Q ss_pred HhhhhHHHH
Q 031242 140 MFSVQVNKW 148 (163)
Q Consensus 140 ~~~~~~~~~ 148 (163)
+|-+|+|++
T Consensus 51 lcssRKkKa 59 (189)
T PF05568_consen 51 LCSSRKKKA 59 (189)
T ss_pred HHhhhhHHH
Confidence 333344443
No 141
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=30.36 E-value=64 Score=19.31 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHhhh
Q 031242 129 AVGFGAVVSPLMFSV 143 (163)
Q Consensus 129 ~~~~~~~~~~~~~~~ 143 (163)
.+++++++.++++++
T Consensus 36 G~~~G~~~s~l~frr 50 (75)
T PF04418_consen 36 GFGIGVVFSLLFFRR 50 (75)
T ss_pred hhhHHHHHHHHHHcc
Confidence 344555555566664
No 142
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.00 E-value=47 Score=20.46 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=9.9
Q ss_pred hhhhHHhHHHHHHHHHhh
Q 031242 125 SIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (163)
.+++++++++++++++-+
T Consensus 76 svgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 76 SVGIAAGVGFLLGLLLRR 93 (94)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 345555666666665433
No 143
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=29.79 E-value=1.2e+02 Score=17.59 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.6
Q ss_pred HhHHHHHHHHH
Q 031242 130 VGFGAVVSPLM 140 (163)
Q Consensus 130 ~~~~~~~~~~~ 140 (163)
+++++++++++
T Consensus 7 li~G~~~Gff~ 17 (64)
T PF03672_consen 7 LIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 144
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=29.75 E-value=89 Score=18.71 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhH
Q 031242 131 GFGAVVSPLMFSVQVNKWYNDLIYKF 156 (163)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (163)
+..+++..+.|+-.|+.|-.--.||.
T Consensus 10 ~~~lmi~~f~fREa~KgwRsGaVdK~ 35 (79)
T PF10808_consen 10 IAFLMIPLFCFREAWKGWRSGAVDKI 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 33445555667777777766666664
No 145
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=29.52 E-value=99 Score=16.59 Aligned_cols=11 Identities=27% Similarity=0.784 Sum_probs=4.4
Q ss_pred HHHHHHHHHhh
Q 031242 132 FGAVVSPLMFS 142 (163)
Q Consensus 132 ~~~~~~~~~~~ 142 (163)
++.++++++++
T Consensus 13 F~~lIC~Fl~~ 23 (54)
T PF06716_consen 13 FGFLICLFLFC 23 (54)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 146
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=29.44 E-value=75 Score=25.19 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=8.3
Q ss_pred ehhhhHHhHHHHHHHHHhh
Q 031242 124 MSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~ 142 (163)
.+++.++++++++.+.+++
T Consensus 302 ~v~~~~vli~vl~~~~~~~ 320 (361)
T PF12259_consen 302 AVCGAIVLIIVLISLAWLY 320 (361)
T ss_pred ehhHHHHHHHHHHHHHhhe
Confidence 4444444444444444333
No 147
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.84 E-value=32 Score=26.18 Aligned_cols=6 Identities=67% Similarity=0.816 Sum_probs=2.3
Q ss_pred cccccc
Q 031242 55 LSVLNL 60 (163)
Q Consensus 55 L~~L~l 60 (163)
|+.+.+
T Consensus 142 l~~~~l 147 (281)
T PF12768_consen 142 LQVLPL 147 (281)
T ss_pred EEEEec
Confidence 333333
No 148
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=28.66 E-value=65 Score=20.34 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=5.7
Q ss_pred hHHhHHHHHHHHHhh
Q 031242 128 FAVGFGAVVSPLMFS 142 (163)
Q Consensus 128 ~~~~~~~~~~~~~~~ 142 (163)
+++.+++.+. ++||
T Consensus 28 VvvavGl~aG-LfFc 41 (106)
T PF14654_consen 28 VVVAVGLFAG-LFFC 41 (106)
T ss_pred HHHHHHHHHH-HHHH
Confidence 3333444333 4444
No 149
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=28.33 E-value=1.5e+02 Score=18.68 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=5.3
Q ss_pred hHHHHHHHHH
Q 031242 144 QVNKWYNDLI 153 (163)
Q Consensus 144 ~~~~~~~~~~ 153 (163)
..+.|..+-.
T Consensus 34 ~~~IW~~~r~ 43 (121)
T PF10669_consen 34 TKSIWHDSRQ 43 (121)
T ss_pred HHHHhhhHHH
Confidence 5556655444
No 150
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=27.20 E-value=21 Score=27.32 Aligned_cols=35 Identities=3% Similarity=-0.038 Sum_probs=0.0
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhhhhHHHHHHHHH
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLI 153 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (163)
+....+...+++++.+++++++++..+|++--+|-
T Consensus 145 yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 145 YLHTFIPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp -----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 34433333333344444445556666655544443
No 151
>PHA03265 envelope glycoprotein D; Provisional
Probab=26.52 E-value=1.4e+02 Score=23.58 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.7
Q ss_pred HhhhhHHH
Q 031242 140 MFSVQVNK 147 (163)
Q Consensus 140 ~~~~~~~~ 147 (163)
+.+.-||.
T Consensus 367 il~~~~rr 374 (402)
T PHA03265 367 ILYVCLRR 374 (402)
T ss_pred HHHHHhhh
Confidence 34455543
No 152
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.70 E-value=43 Score=23.75 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=4.7
Q ss_pred eeehhhhHHhH
Q 031242 122 IAMSIGFAVGF 132 (163)
Q Consensus 122 ~~~~~~~~~~~ 132 (163)
+.|++|.+++.
T Consensus 27 vSm~iGLviG~ 37 (197)
T PF15179_consen 27 VSMAIGLVIGA 37 (197)
T ss_pred HHHHHHHHHHH
Confidence 34445544433
No 153
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=25.47 E-value=23 Score=26.51 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=0.0
Q ss_pred eeeeeehhhhHHhHHHHHHHHHhhhhHH
Q 031242 119 WFFIAMSIGFAVGFGAVVSPLMFSVQVN 146 (163)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (163)
|..++...-+.+++++++++++|+++.|
T Consensus 215 ~~~iAL~sl~SLVIGFvlG~l~WKkkq~ 242 (273)
T PF02404_consen 215 WPAIALPSLFSLVIGFVLGALYWKKKQR 242 (273)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333334455666777766665444
No 154
>PTZ00370 STEVOR; Provisional
Probab=25.40 E-value=79 Score=24.19 Aligned_cols=6 Identities=0% Similarity=-0.214 Sum_probs=2.2
Q ss_pred hhhhHH
Q 031242 141 FSVQVN 146 (163)
Q Consensus 141 ~~~~~~ 146 (163)
+|-++|
T Consensus 276 iwlyrr 281 (296)
T PTZ00370 276 IWLYRR 281 (296)
T ss_pred HHHHHh
Confidence 333333
No 155
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.09 E-value=1.1e+02 Score=23.54 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=14.3
Q ss_pred hhhhHHhHHHHHHHHHhhhhHHHH-HHHHHHhHh
Q 031242 125 SIGFAVGFGAVVSPLMFSVQVNKW-YNDLIYKFI 157 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (163)
+..+++++++|++++++..=||-+ -.+|=.|++
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRRKKKmkKKlQ 292 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQ 292 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 333444444444444444344433 344544443
No 156
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=24.34 E-value=58 Score=23.42 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=8.2
Q ss_pred hhhhHHhHHHHHHHHHhh
Q 031242 125 SIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (163)
++|.+++++++++.++.+
T Consensus 186 giG~v~I~~l~~~~~~l~ 203 (209)
T PF11353_consen 186 GIGTVLIVLLILLGFLLR 203 (209)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345444444444444433
No 157
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=24.22 E-value=1.2e+02 Score=15.90 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=4.9
Q ss_pred eeehhhhHHhHH
Q 031242 122 IAMSIGFAVGFG 133 (163)
Q Consensus 122 ~~~~~~~~~~~~ 133 (163)
+....|+.+++.
T Consensus 8 VW~sYg~t~l~l 19 (45)
T TIGR03141 8 VWLAYGITALVL 19 (45)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 158
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=23.81 E-value=1.7e+02 Score=18.55 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhHhcee
Q 031242 145 VNKWYNDLIYKFIYRR 160 (163)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (163)
-.+|..+++|+...|+
T Consensus 19 ~g~~l~~~~e~ll~ri 34 (108)
T PF04367_consen 19 FGKWLLNWLERLLQRI 34 (108)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 3455666666665554
No 159
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.48 E-value=14 Score=30.39 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCCCeEEccCCCCCCCCC----cccCCC-cccceeccccccCCCc----CchhhcCCCCcccccccCccc
Q 031242 4 FKSLYALNMSHNALTGSIP----SSFGNL-KQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNL 65 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p----~~~~~l-~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l 65 (163)
...|+.|++++|.+.+.-- ..+... ..+++|++..+.++.. +...+.....++.++++.|.+
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3445555555555552100 111111 3344455555444322 222333445555555555554
No 160
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.20 E-value=1.2e+02 Score=22.27 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhhHHHH
Q 031242 133 GAVVSPLMFSVQVNKW 148 (163)
Q Consensus 133 ~~~~~~~~~~~~~~~~ 148 (163)
.+++++++++...|.|
T Consensus 223 IiIIIL~cfKiPQKl~ 238 (258)
T PHA03240 223 IIVIILFFFKIPQKLF 238 (258)
T ss_pred HHHHHHHHHhccHHHH
Confidence 3334444444343333
No 161
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=23.06 E-value=78 Score=17.90 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=8.3
Q ss_pred ehhhhHHhHHHHHHHHHhh
Q 031242 124 MSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~ 142 (163)
+.+++.++++++.+..+++
T Consensus 6 ~Lipvsi~l~~v~l~~flW 24 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLW 24 (58)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 162
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=22.87 E-value=1.8e+02 Score=21.05 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=17.6
Q ss_pred hhhHHhHHHHHHHHHhhhhHHHHHHHHHHhH
Q 031242 126 IGFAVGFGAVVSPLMFSVQVNKWYNDLIYKF 156 (163)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (163)
+..++++++.+-+++++.+.+.|+.+...++
T Consensus 168 ~aTA~GL~vAIPAvi~yn~l~r~~~~~~~~~ 198 (216)
T COG0811 168 IATAIGLFVAIPAVVAYNVLRRKVEELLAKL 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666555566666655543
No 163
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=22.61 E-value=1.8e+02 Score=17.25 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 031242 144 QVNKWYNDL 152 (163)
Q Consensus 144 ~~~~~~~~~ 152 (163)
.++..|-.|
T Consensus 42 pRKk~YadF 50 (73)
T PF02937_consen 42 PRKKAYADF 50 (73)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 164
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=21.85 E-value=89 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=5.5
Q ss_pred eeeeeehhhhHH
Q 031242 119 WFFIAMSIGFAV 130 (163)
Q Consensus 119 ~~~~~~~~~~~~ 130 (163)
..++.+++|+..
T Consensus 44 ~lYIL~vmgfFg 55 (129)
T PF02060_consen 44 YLYILVVMGFFG 55 (129)
T ss_dssp T-HHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 455555555433
No 165
>PF15069 FAM163: FAM163 family
Probab=21.82 E-value=1.4e+02 Score=20.30 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 031242 135 VVSPLMFS 142 (163)
Q Consensus 135 ~~~~~~~~ 142 (163)
++++++++
T Consensus 21 IIaVLCYC 28 (143)
T PF15069_consen 21 IIAVLCYC 28 (143)
T ss_pred HHHHHHHH
Confidence 33334444
No 166
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=21.79 E-value=13 Score=22.42 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=11.1
Q ss_pred eeeehhhhHHhHHHHHHHHHhhhh
Q 031242 121 FIAMSIGFAVGFGAVVSPLMFSVQ 144 (163)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
.++++.+-+++..+++++++++.+
T Consensus 36 LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 36 LAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555544444444444433
No 167
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.57 E-value=1.4e+02 Score=15.68 Aligned_cols=15 Identities=20% Similarity=-0.015 Sum_probs=6.0
Q ss_pred eeehhhhHHhHHHHH
Q 031242 122 IAMSIGFAVGFGAVV 136 (163)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (163)
+....++.+++.++.
T Consensus 7 VW~sYg~t~~~l~~l 21 (46)
T PF04995_consen 7 VWSSYGVTALVLAGL 21 (46)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 168
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=21.34 E-value=1.3e+02 Score=18.22 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.0
Q ss_pred hhhHHhHH
Q 031242 126 IGFAVGFG 133 (163)
Q Consensus 126 ~~~~~~~~ 133 (163)
+|..++++
T Consensus 13 ~GM~~VF~ 20 (82)
T TIGR01195 13 LGMGIVFL 20 (82)
T ss_pred HHHHHHHH
Confidence 33333333
No 169
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.26 E-value=54 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=12.5
Q ss_pred eeeeehhhhHHhHHHHHHHHHhh
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
+..++++|+.|.+++|++-++=+
T Consensus 364 LstgaIaGIsvavvvvVgglvGf 386 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGF 386 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHH
Confidence 44555566655555555555533
No 170
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.14 E-value=1.5e+02 Score=21.36 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=7.5
Q ss_pred HHHHHHHHhHhce
Q 031242 147 KWYNDLIYKFIYR 159 (163)
Q Consensus 147 ~~~~~~~~~~~~~ 159 (163)
+....++++..++
T Consensus 76 ~pI~~vLe~R~~~ 88 (204)
T PRK09174 76 PRIGGIIETRRDR 88 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666665544
No 171
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=20.21 E-value=1.3e+02 Score=23.03 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=7.4
Q ss_pred hhHHhHHHHHHHHHhhh
Q 031242 127 GFAVGFGAVVSPLMFSV 143 (163)
Q Consensus 127 ~~~~~~~~~~~~~~~~~ 143 (163)
+++.++++.+++++..+
T Consensus 287 ~~~~~~G~~~~~f~LYK 303 (354)
T PF05795_consen 287 PVLSVLGIPLIFFLLYK 303 (354)
T ss_pred hhhhhHHHHHHHHHHhc
Confidence 33334444444444443
No 172
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.16 E-value=1e+02 Score=21.49 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHhHhceee
Q 031242 149 YNDLIYKFIYRRF 161 (163)
Q Consensus 149 ~~~~~~~~~~~~~ 161 (163)
|-+-+.....+|+
T Consensus 81 YvW~LKq~ln~I~ 93 (165)
T PF11286_consen 81 YVWQLKQLLNKIY 93 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444455544
No 173
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=20.13 E-value=1.4e+02 Score=14.83 Aligned_cols=16 Identities=19% Similarity=0.494 Sum_probs=9.9
Q ss_pred hhHHhHHHHHHHHHhh
Q 031242 127 GFAVGFGAVVSPLMFS 142 (163)
Q Consensus 127 ~~~~~~~~~~~~~~~~ 142 (163)
|+.++-++++.+++++
T Consensus 10 giL~iYgiiiT~L~~R 25 (33)
T PF11628_consen 10 GILFIYGIIITALYCR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666665
Done!