Query 031242
Match_columns 163
No_of_seqs 210 out of 3229
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.7 2.2E-18 7.6E-23 143.6 6.2 99 2-101 653-751 (768)
2 1ogq_A PGIP-2, polygalacturona 99.6 2.3E-15 8E-20 113.3 5.5 96 1-98 217-312 (313)
3 1w8a_A SLIT protein; signaling 99.6 4E-15 1.4E-19 104.7 6.3 91 2-92 51-142 (192)
4 2wfh_A SLIT homolog 2 protein 99.5 1.2E-14 4.2E-19 102.4 7.0 90 2-91 51-141 (193)
5 3g39_A Variable lymphocyte rec 99.5 2.4E-14 8.3E-19 98.9 8.4 89 4-92 29-118 (170)
6 3j0a_A TOLL-like receptor 5; m 99.5 3.2E-15 1.1E-19 125.8 4.5 84 4-91 479-562 (844)
7 2v70_A SLIT-2, SLIT homolog 2 99.5 2E-14 6.8E-19 103.2 7.7 90 2-91 78-168 (220)
8 2r9u_A Variable lymphocyte rec 99.5 2.9E-14 1E-18 98.9 8.2 89 4-92 32-121 (174)
9 4g8a_A TOLL-like receptor 4; l 99.5 2.3E-14 8E-19 115.9 8.5 91 1-91 490-582 (635)
10 2v9t_B SLIT homolog 2 protein 99.5 6.8E-14 2.3E-18 100.4 8.2 90 2-91 77-167 (220)
11 2ifg_A High affinity nerve gro 99.5 5.7E-14 2E-18 106.8 7.8 91 1-91 27-118 (347)
12 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 99.2 8.7 89 2-91 85-174 (229)
13 2o6r_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 94.5 8.9 88 3-90 50-138 (177)
14 3rgz_A Protein brassinosteroid 99.5 5.8E-14 2E-18 117.1 6.7 88 2-89 629-717 (768)
15 2o6s_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 94.5 9.2 89 3-91 74-163 (208)
16 3m19_A Variable lymphocyte rec 99.4 6E-13 2.1E-17 97.0 9.0 90 2-91 104-194 (251)
17 3rfs_A Internalin B, repeat mo 99.4 9.8E-13 3.3E-17 97.0 9.2 91 2-92 130-221 (272)
18 1p9a_G Platelet glycoprotein I 99.4 1.1E-12 3.9E-17 97.7 8.8 89 3-91 122-210 (290)
19 2o6q_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 95.0 9.0 89 3-91 131-220 (270)
20 2v9t_B SLIT homolog 2 protein 99.4 1.4E-12 4.6E-17 93.6 7.6 81 6-86 33-114 (220)
21 2v70_A SLIT-2, SLIT homolog 2 99.4 1E-12 3.5E-17 94.2 6.9 87 2-88 54-141 (220)
22 3v47_A TOLL-like receptor 5B a 99.4 1.2E-12 4E-17 102.6 7.4 92 2-93 320-412 (455)
23 3e6j_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 91.9 8.4 83 5-87 40-123 (229)
24 3zyj_A Leucine-rich repeat-con 99.3 1.2E-12 4.2E-17 102.5 6.3 90 2-91 204-294 (440)
25 3vq2_A TLR4, TOLL-like recepto 99.3 1.6E-12 5.6E-17 105.2 7.1 93 1-93 469-562 (606)
26 3zyi_A Leucine-rich repeat-con 99.3 1.7E-12 5.9E-17 102.0 6.6 91 2-92 215-306 (452)
27 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.4E-17 86.8 5.5 80 5-86 17-98 (149)
28 2wfh_A SLIT homolog 2 protein 99.3 5E-12 1.7E-16 88.9 7.5 84 5-89 31-115 (193)
29 3m19_A Variable lymphocyte rec 99.3 7.4E-12 2.5E-16 91.2 8.6 86 2-87 56-142 (251)
30 2o6s_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 87.8 8.6 81 6-86 29-110 (208)
31 1ogq_A PGIP-2, polygalacturona 99.3 1E-12 3.5E-17 98.9 3.4 85 3-87 74-160 (313)
32 1ozn_A Reticulon 4 receptor; N 99.3 1.8E-12 6.3E-17 95.9 4.7 88 4-91 152-240 (285)
33 2ell_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 87.4 5.3 81 4-86 48-130 (168)
34 2z66_A Variable lymphocyte rec 99.3 6.8E-12 2.3E-16 93.6 7.2 85 3-87 148-234 (306)
35 4fcg_A Uncharacterized protein 99.3 7.8E-12 2.7E-16 94.7 7.5 85 4-90 182-267 (328)
36 4g8a_A TOLL-like receptor 4; l 99.3 6.1E-12 2.1E-16 101.7 7.2 86 2-87 73-159 (635)
37 2ell_A Acidic leucine-rich nuc 99.3 6.8E-12 2.3E-16 85.9 6.3 87 1-88 67-159 (168)
38 1w8a_A SLIT protein; signaling 99.3 9.1E-12 3.1E-16 87.4 6.7 85 5-89 29-115 (192)
39 2z63_A TOLL-like receptor 4, v 99.3 6.5E-12 2.2E-16 100.8 6.1 90 3-92 443-534 (570)
40 1dce_A Protein (RAB geranylger 99.2 6.3E-12 2.2E-16 101.8 6.1 82 3-87 461-544 (567)
41 3rfs_A Internalin B, repeat mo 99.2 3.6E-11 1.2E-15 88.5 9.4 87 2-88 82-169 (272)
42 4ezg_A Putative uncharacterize 99.2 7.2E-12 2.5E-16 88.1 5.0 83 3-86 86-169 (197)
43 1p9a_G Platelet glycoprotein I 99.2 3E-11 1E-15 90.0 8.6 83 3-86 75-158 (290)
44 2o6r_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 83.0 8.3 85 4-88 27-112 (177)
45 4b8c_D Glucose-repressible alc 99.2 8.2E-12 2.8E-16 103.8 5.7 85 3-89 245-329 (727)
46 2xot_A Amphoterin-induced prot 99.2 1.3E-11 4.3E-16 94.6 6.2 86 3-88 62-148 (361)
47 2id5_A Lingo-1, leucine rich r 99.2 9.4E-12 3.2E-16 98.2 4.8 90 2-91 245-335 (477)
48 4fcg_A Uncharacterized protein 99.2 2E-11 6.7E-16 92.4 6.3 91 2-93 203-294 (328)
49 3t6q_A CD180 antigen; protein- 99.2 6.1E-12 2.1E-16 101.8 3.7 89 2-91 473-562 (606)
50 2je0_A Acidic leucine-rich nuc 99.2 6.4E-12 2.2E-16 84.4 2.9 86 1-88 38-125 (149)
51 2xot_A Amphoterin-induced prot 99.2 2.5E-11 8.4E-16 93.0 6.4 84 5-88 39-124 (361)
52 1ziw_A TOLL-like receptor 3; i 99.2 2.2E-11 7.6E-16 99.9 6.6 91 2-93 533-626 (680)
53 2o6q_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 86.8 8.7 87 2-88 82-169 (270)
54 4ezg_A Putative uncharacterize 99.2 2.2E-11 7.4E-16 85.7 5.3 84 1-87 108-192 (197)
55 1ozn_A Reticulon 4 receptor; N 99.2 6.7E-11 2.3E-15 87.4 8.1 86 2-87 77-164 (285)
56 3v47_A TOLL-like receptor 5B a 99.2 3.3E-11 1.1E-15 94.3 6.7 87 2-88 296-383 (455)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 5.2E-11 1.8E-15 95.9 7.7 89 2-91 400-512 (562)
58 3vq2_A TLR4, TOLL-like recepto 99.2 4.7E-11 1.6E-15 96.7 7.3 86 2-87 53-139 (606)
59 3g39_A Variable lymphocyte rec 99.2 6.7E-11 2.3E-15 81.5 6.9 72 1-72 50-121 (170)
60 2z62_A TOLL-like receptor 4, v 99.2 5.8E-11 2E-15 87.4 6.9 84 3-86 50-134 (276)
61 1wwl_A Monocyte differentiatio 99.1 3.5E-11 1.2E-15 90.3 5.2 84 3-87 93-184 (312)
62 2z7x_B TOLL-like receptor 1, v 99.1 9E-11 3.1E-15 93.4 7.7 88 3-91 372-483 (520)
63 1a9n_A U2A', U2A'; complex (nu 99.1 1.8E-11 6.1E-16 84.6 3.2 83 5-89 42-126 (176)
64 2z80_A TOLL-like receptor 2, v 99.1 7.1E-11 2.4E-15 89.9 6.4 86 2-87 73-160 (353)
65 1a9n_A U2A', U2A'; complex (nu 99.1 3.6E-11 1.2E-15 83.0 4.3 82 3-88 17-100 (176)
66 4b8c_D Glucose-repressible alc 99.1 7.2E-11 2.5E-15 98.1 6.8 85 2-88 221-305 (727)
67 2z81_A CD282 antigen, TOLL-lik 99.1 7E-11 2.4E-15 94.5 6.6 86 2-87 47-134 (549)
68 3t6q_A CD180 antigen; protein- 99.1 6.8E-11 2.3E-15 95.7 6.3 86 2-87 54-140 (606)
69 3oja_B Anopheles plasmodium-re 99.1 1.7E-10 5.8E-15 93.7 8.5 86 2-87 96-182 (597)
70 4glp_A Monocyte differentiatio 99.1 1.4E-10 4.8E-15 86.8 7.3 83 2-87 194-283 (310)
71 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 6E-15 79.7 7.3 79 7-88 14-93 (174)
72 2z66_A Variable lymphocyte rec 99.1 7.8E-11 2.7E-15 87.9 5.9 87 2-88 123-211 (306)
73 3zyi_A Leucine-rich repeat-con 99.1 1.2E-10 4.1E-15 91.5 7.2 69 2-70 96-164 (452)
74 2z62_A TOLL-like receptor 4, v 99.1 1.1E-10 3.7E-15 86.0 6.5 85 2-86 73-159 (276)
75 3o6n_A APL1; leucine-rich repe 99.1 2.4E-10 8.3E-15 88.0 8.6 85 2-87 90-176 (390)
76 2ft3_A Biglycan; proteoglycan, 99.1 1.6E-10 5.5E-15 87.2 7.3 86 5-90 193-278 (332)
77 1xku_A Decorin; proteoglycan, 99.1 1.3E-10 4.4E-15 87.6 6.8 84 5-88 192-275 (330)
78 2id5_A Lingo-1, leucine rich r 99.1 1.3E-10 4.3E-15 91.7 6.7 84 3-86 54-138 (477)
79 4eco_A Uncharacterized protein 99.1 1.9E-10 6.6E-15 94.1 7.8 83 4-88 487-578 (636)
80 3zyj_A Leucine-rich repeat-con 99.1 1.8E-10 6.2E-15 90.2 7.1 84 2-85 85-169 (440)
81 1wwl_A Monocyte differentiatio 99.1 1.2E-10 4.1E-15 87.4 5.8 84 2-87 198-285 (312)
82 3j0a_A TOLL-like receptor 5; m 99.1 1.3E-10 4.3E-15 97.9 6.5 86 2-87 70-159 (844)
83 4eco_A Uncharacterized protein 99.1 4.3E-11 1.5E-15 98.0 3.5 85 3-87 247-341 (636)
84 3o6n_A APL1; leucine-rich repe 99.1 1.1E-10 3.7E-15 89.9 5.5 86 3-88 67-153 (390)
85 3oja_B Anopheles plasmodium-re 99.1 1.7E-10 5.7E-15 93.7 6.2 87 3-89 73-160 (597)
86 2z63_A TOLL-like receptor 4, v 99.1 2.3E-10 7.9E-15 91.8 6.9 86 2-87 49-135 (570)
87 1dce_A Protein (RAB geranylger 99.1 1.9E-10 6.6E-15 93.1 6.3 79 1-81 482-565 (567)
88 2ft3_A Biglycan; proteoglycan, 99.1 3E-10 1E-14 85.7 7.0 66 3-69 215-280 (332)
89 2z81_A CD282 antigen, TOLL-lik 99.0 1.2E-10 4.2E-15 93.1 4.8 85 5-89 26-111 (549)
90 1xku_A Decorin; proteoglycan, 99.0 2.9E-10 9.8E-15 85.7 6.5 85 2-89 168-253 (330)
91 3oja_A Leucine-rich immune mol 99.0 9.8E-11 3.3E-15 93.1 4.0 86 3-91 167-252 (487)
92 3o53_A Protein LRIM1, AGAP0063 99.0 1.3E-10 4.6E-15 87.3 4.4 85 4-91 168-252 (317)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 3E-10 1E-14 91.4 6.5 81 5-87 52-132 (562)
94 2z7x_B TOLL-like receptor 1, v 99.0 1.8E-10 6E-15 91.8 4.8 79 6-86 22-100 (520)
95 4fmz_A Internalin; leucine ric 99.0 3E-10 1E-14 85.9 5.8 84 2-89 240-324 (347)
96 2xwt_C Thyrotropin receptor; s 99.0 1.8E-10 6.3E-15 83.0 4.3 84 2-86 52-140 (239)
97 2z80_A TOLL-like receptor 2, v 99.0 2.3E-10 8E-15 87.0 4.7 85 5-89 52-137 (353)
98 4ecn_A Leucine-rich repeat pro 99.0 1E-10 3.5E-15 98.9 2.6 84 3-87 489-584 (876)
99 1ziw_A TOLL-like receptor 3; i 99.0 5.1E-10 1.7E-14 91.8 6.5 84 3-86 47-131 (680)
100 2ifg_A High affinity nerve gro 99.0 6.7E-10 2.3E-14 84.2 6.2 79 8-88 11-92 (347)
101 4ecn_A Leucine-rich repeat pro 99.0 1.4E-09 4.9E-14 91.9 8.2 84 3-88 726-818 (876)
102 1h6t_A Internalin B; cell adhe 99.0 1.3E-09 4.4E-14 81.1 6.8 78 4-86 111-188 (291)
103 4glp_A Monocyte differentiatio 99.0 1.1E-09 3.6E-14 82.0 6.3 83 5-87 91-180 (310)
104 1h6u_A Internalin H; cell adhe 98.9 1.7E-09 5.8E-14 81.0 7.0 37 4-42 84-120 (308)
105 1h6u_A Internalin H; cell adhe 98.9 1.5E-09 5.2E-14 81.3 6.7 15 4-18 106-120 (308)
106 3oja_A Leucine-rich immune mol 98.9 5.4E-10 1.8E-14 88.8 4.4 65 4-68 119-184 (487)
107 1h6t_A Internalin B; cell adhe 98.9 1.6E-09 5.6E-14 80.5 6.1 59 4-66 67-125 (291)
108 2xwt_C Thyrotropin receptor; s 98.9 5.2E-10 1.8E-14 80.7 3.2 83 3-87 78-167 (239)
109 1xeu_A Internalin C; cellular 98.9 1.7E-09 5.9E-14 79.3 5.9 38 49-87 124-161 (263)
110 1m9s_A Internalin B; cell inva 98.9 1.3E-09 4.5E-14 88.9 5.3 78 4-86 130-207 (605)
111 1m9s_A Internalin B; cell inva 98.9 3.1E-09 1E-13 86.7 7.3 81 2-87 106-186 (605)
112 1xeu_A Internalin C; cellular 98.9 3.4E-09 1.1E-13 77.8 6.9 78 4-87 62-139 (263)
113 4fmz_A Internalin; leucine ric 98.8 6.8E-09 2.3E-13 78.5 7.3 82 2-88 63-144 (347)
114 3o53_A Protein LRIM1, AGAP0063 98.8 2.3E-09 7.7E-14 80.5 4.4 83 4-87 119-202 (317)
115 1ds9_A Outer arm dynein; leuci 98.8 2.2E-11 7.7E-16 85.6 -7.1 81 3-87 46-126 (198)
116 1o6v_A Internalin A; bacterial 98.8 3.8E-09 1.3E-13 83.2 4.7 81 4-89 308-388 (466)
117 1o6v_A Internalin A; bacterial 98.8 5.8E-09 2E-13 82.2 5.2 80 3-87 66-145 (466)
118 1ds9_A Outer arm dynein; leuci 98.8 2.7E-11 9.3E-16 85.2 -7.5 85 3-90 68-154 (198)
119 3bz5_A Internalin-J, INLJ; leu 98.8 1.4E-08 4.9E-13 80.1 6.8 16 51-66 104-119 (457)
120 3rw6_A Nuclear RNA export fact 98.7 6.7E-09 2.3E-13 76.6 3.4 66 3-70 168-237 (267)
121 3bz5_A Internalin-J, INLJ; leu 98.7 3.5E-08 1.2E-12 77.8 7.8 63 2-70 188-250 (457)
122 3cvr_A Invasion plasmid antige 98.7 2.1E-08 7E-13 81.3 5.6 78 5-90 160-244 (571)
123 3cvr_A Invasion plasmid antige 98.7 4.9E-08 1.7E-12 79.1 7.4 55 5-67 100-154 (571)
124 3g06_A SSPH2 (leucine-rich rep 98.6 5.9E-08 2E-12 79.4 7.3 77 5-89 221-297 (622)
125 2ast_B S-phase kinase-associat 98.6 2.3E-09 7.8E-14 80.7 -1.8 59 5-63 93-152 (336)
126 2ca6_A RAN GTPase-activating p 98.6 2E-09 6.9E-14 82.8 -2.7 88 3-90 214-317 (386)
127 1jl5_A Outer protein YOPM; leu 98.6 1.3E-07 4.3E-12 74.6 6.9 75 5-86 131-205 (454)
128 4ay9_X Follicle-stimulating ho 98.5 6.1E-08 2.1E-12 73.7 4.8 82 5-87 30-115 (350)
129 4ay9_X Follicle-stimulating ho 98.5 7.6E-08 2.6E-12 73.2 5.0 71 1-71 50-122 (350)
130 3goz_A Leucine-rich repeat-con 98.5 1.3E-08 4.5E-13 77.7 0.1 64 6-69 23-96 (362)
131 1jl5_A Outer protein YOPM; leu 98.5 3.5E-07 1.2E-11 72.0 7.5 61 1-67 149-209 (454)
132 2ca6_A RAN GTPase-activating p 98.4 2.6E-08 8.8E-13 76.6 -0.5 86 2-87 57-170 (386)
133 3goz_A Leucine-rich repeat-con 98.4 1.4E-08 4.9E-13 77.5 -2.1 85 3-87 48-149 (362)
134 2ast_B S-phase kinase-associat 98.4 6.3E-08 2.1E-12 72.7 1.5 84 5-89 70-155 (336)
135 3g06_A SSPH2 (leucine-rich rep 98.4 5.1E-07 1.8E-11 73.9 6.6 54 6-67 62-115 (622)
136 3rw6_A Nuclear RNA export fact 98.2 8.9E-07 3.1E-11 65.2 2.9 64 26-91 167-234 (267)
137 1z7x_W Ribonuclease inhibitor; 98.1 1.2E-07 4.1E-12 74.1 -3.0 63 4-66 283-354 (461)
138 1z7x_W Ribonuclease inhibitor; 97.9 7E-07 2.4E-11 69.7 -1.8 63 5-67 199-270 (461)
139 3un9_A NLR family member X1; l 97.8 6.8E-07 2.3E-11 68.8 -3.0 84 4-87 154-250 (372)
140 3sb4_A Hypothetical leucine ri 97.8 1.8E-05 6.3E-10 59.4 4.7 81 4-87 225-308 (329)
141 3sb4_A Hypothetical leucine ri 97.7 3.8E-05 1.3E-09 57.6 5.1 79 1-81 246-326 (329)
142 3ogk_B Coronatine-insensitive 97.6 2.8E-06 9.7E-11 68.3 -2.5 83 3-85 162-252 (592)
143 3rfe_A Platelet glycoprotein I 97.6 0.00012 4.1E-09 47.9 5.6 57 8-66 11-68 (130)
144 3rfe_A Platelet glycoprotein I 97.6 8.2E-05 2.8E-09 48.7 4.3 58 32-91 11-70 (130)
145 1io0_A Tropomodulin; LRR prote 97.6 3.5E-06 1.2E-10 58.5 -2.5 86 2-87 33-134 (185)
146 3ogk_B Coronatine-insensitive 97.5 1.1E-05 3.7E-10 64.9 -0.4 60 28-87 462-524 (592)
147 1io0_A Tropomodulin; LRR prote 97.5 8.9E-06 3.1E-10 56.4 -0.8 65 3-67 63-137 (185)
148 3un9_A NLR family member X1; l 97.5 6.9E-06 2.4E-10 63.1 -1.6 66 3-68 181-254 (372)
149 2p1m_B Transport inhibitor res 97.4 4.4E-06 1.5E-10 67.2 -3.7 61 28-88 455-518 (594)
150 2p1m_B Transport inhibitor res 97.2 2.7E-05 9.4E-10 62.5 -1.4 83 4-86 104-194 (594)
151 3e4g_A ATP synthase subunit S, 97.1 4.5E-05 1.6E-09 52.6 -0.9 85 6-90 62-153 (176)
152 2ra8_A Uncharacterized protein 97.0 4.6E-05 1.6E-09 58.4 -2.2 85 3-87 217-318 (362)
153 4fdw_A Leucine rich hypothetic 96.7 0.0026 8.9E-08 49.2 6.0 59 3-62 269-332 (401)
154 2ra8_A Uncharacterized protein 96.3 0.00055 1.9E-08 52.4 -0.2 84 4-87 192-290 (362)
155 4fdw_A Leucine rich hypothetic 96.2 0.0082 2.8E-07 46.4 5.6 60 2-63 177-236 (401)
156 3e4g_A ATP synthase subunit S, 96.0 0.00066 2.3E-08 46.7 -1.0 63 2-64 82-150 (176)
157 4fs7_A Uncharacterized protein 94.2 0.07 2.4E-06 40.7 5.2 59 3-63 295-353 (394)
158 4h09_A Hypothetical leucine ri 94.0 0.12 4.2E-06 39.0 6.2 39 24-62 281-319 (379)
159 4gt6_A Cell surface protein; l 93.9 0.1 3.5E-06 39.8 5.6 61 24-86 306-367 (394)
160 4h09_A Hypothetical leucine ri 93.8 0.078 2.7E-06 40.1 4.8 62 1-63 282-343 (379)
161 4gt6_A Cell surface protein; l 93.6 0.077 2.6E-06 40.5 4.5 63 1-65 307-369 (394)
162 1pgv_A TMD-1, tropomodulin TMD 93.0 0.015 5.1E-07 40.6 -0.3 83 4-86 40-136 (197)
163 4fs7_A Uncharacterized protein 93.0 0.082 2.8E-06 40.3 3.8 61 1-63 316-376 (394)
164 2k1k_A Ephrin type-A receptor 91.5 0.053 1.8E-06 27.3 0.7 23 120-142 12-34 (38)
165 1pgv_A TMD-1, tropomodulin TMD 91.0 0.039 1.3E-06 38.5 -0.2 60 5-64 70-137 (197)
166 2jwa_A Receptor tyrosine-prote 90.8 0.083 2.8E-06 27.4 1.0 25 121-145 14-38 (44)
167 2ks1_B Epidermal growth factor 87.1 0.35 1.2E-05 25.1 1.8 9 123-131 15-23 (44)
168 2l9u_A Receptor tyrosine-prote 83.2 1.2 4.1E-05 21.6 2.5 23 124-146 12-34 (40)
169 2l2t_A Receptor tyrosine-prote 82.9 0.44 1.5E-05 24.7 1.0 9 123-131 14-22 (44)
170 1iij_A ERBB-2 receptor protein 74.3 0.23 8E-06 24.3 -1.6 7 138-144 27-33 (35)
171 2l34_A TYRO protein tyrosine k 48.4 6.1 0.00021 18.9 0.8 20 122-141 10-29 (33)
172 2lz0_A Uncharacterized protein 41.7 42 0.0014 20.1 4.1 46 16-62 7-52 (100)
173 4gnt_B Carbohydrate-responsive 40.4 9.1 0.00031 16.7 0.6 15 143-157 9-23 (26)
174 2klu_A T-cell surface glycopro 35.8 20 0.00069 20.1 1.7 18 124-141 12-29 (70)
175 2llm_A Amyloid beta A4 protein 36.7 11 0.00036 19.2 0.0 8 133-140 32-39 (43)
176 2lp1_A C99; alzheimer'S D memb 30.2 16 0.00055 22.9 0.0 23 121-143 32-54 (122)
177 1v54_I STA, cytochrome C oxida 23.5 1.1E+02 0.0038 17.4 3.8 10 144-153 42-51 (73)
178 1afo_A Glycophorin A; integral 23.0 43 0.0015 16.5 1.4 20 123-142 14-33 (40)
179 2ket_A Cathelicidin-6; antimic 20.9 67 0.0023 13.9 2.2 13 144-156 5-17 (27)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2.2e-18 Score=143.64 Aligned_cols=99 Identities=40% Similarity=0.762 Sum_probs=90.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
++++.|+.|+|++|+++|.+|+.++++++|+.||+++|+++|.+|..+..+++|+.||+++|+++|.+|...++.++...
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~ 732 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred cccCCCCCCCCCCCCCCCCC
Q 031242 82 SYEGNKGLYGPPLTNESQTR 101 (163)
Q Consensus 82 ~~~~n~~lc~~~~~~~c~~~ 101 (163)
.+.||+++||.|.. .|...
T Consensus 733 ~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 733 KFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GGCSCTEEESTTSC-CCCSC
T ss_pred HhcCCchhcCCCCc-CCCCC
Confidence 99999999999876 88654
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=2.3e-15 Score=113.33 Aligned_cols=96 Identities=36% Similarity=0.618 Sum_probs=86.8
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~ 80 (163)
+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|....++++..
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~ 295 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCG
T ss_pred HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccCh
Confidence 35788999999999999966555 88899999999999999999999999999999999999999999998888999999
Q ss_pred ccccCCCCCCCCCCCCCC
Q 031242 81 TSYEGNKGLYGPPLTNES 98 (163)
Q Consensus 81 l~~~~n~~lc~~~~~~~c 98 (163)
+++.+|+++|+.|.. .|
T Consensus 296 l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 296 SAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGTCSSSEEESTTSS-CC
T ss_pred HHhcCCCCccCCCCC-CC
Confidence 999999999997764 46
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=4e-15 Score=104.70 Aligned_cols=91 Identities=26% Similarity=0.351 Sum_probs=79.5
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+.+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+++.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 46788999999999999877888999999999999999999777777889999999999999999887754 67888999
Q ss_pred ccccCCCCCCCC
Q 031242 81 TSYEGNKGLYGP 92 (163)
Q Consensus 81 l~~~~n~~lc~~ 92 (163)
+++++|++.|..
T Consensus 131 L~L~~N~l~c~c 142 (192)
T 1w8a_A 131 LNLASNPFNCNC 142 (192)
T ss_dssp EECTTCCBCCSG
T ss_pred EEeCCCCccCcC
Confidence 999999988863
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=102.38 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
.++++|+.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|+.|++++|+++..++. ...+.+++.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 4578899999999999976667889999999999999999977777888999999999999999977765 367888999
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++++|++.|.
T Consensus 131 L~L~~N~~~C~ 141 (193)
T 2wfh_A 131 LAIGANPLYCD 141 (193)
T ss_dssp EECCSSCEECS
T ss_pred EEeCCCCeecC
Confidence 99999998885
No 5
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=2.4e-14 Score=98.89 Aligned_cols=89 Identities=24% Similarity=0.177 Sum_probs=79.7
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~ 82 (163)
.++|+.|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|+.|++++|++++.++. ...+.+|+.++
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 36799999999999977788899999999999999999966566678999999999999999998876 46789999999
Q ss_pred ccCCCCCCCC
Q 031242 83 YEGNKGLYGP 92 (163)
Q Consensus 83 ~~~n~~lc~~ 92 (163)
+++|++.|..
T Consensus 109 L~~N~~~c~c 118 (170)
T 3g39_A 109 LLNNPWDCAC 118 (170)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCCCCCc
Confidence 9999998864
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=3.2e-15 Score=125.81 Aligned_cols=84 Identities=27% Similarity=0.357 Sum_probs=46.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+++|+.|+|++|.+++..|..+.++++|+.|++++|++++..|..+. ++|+.|++++|++++.+|.. +.++..+++
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l 554 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDI 554 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEE
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEe
Confidence 34445555555555544444455555555555555555533232222 45555555555555555543 457788889
Q ss_pred cCCCCCCC
Q 031242 84 EGNKGLYG 91 (163)
Q Consensus 84 ~~n~~lc~ 91 (163)
++|++.|.
T Consensus 555 ~~Np~~C~ 562 (844)
T 3j0a_A 555 THNKFICE 562 (844)
T ss_dssp EEECCCCS
T ss_pred cCCCcccc
Confidence 99999994
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=103.18 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+++.
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 45667777777777777555556777777777777777777666777777777777777777777775543 56677777
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++++|++.|.
T Consensus 158 L~L~~N~l~c~ 168 (220)
T 2v70_A 158 LNLLANPFNCN 168 (220)
T ss_dssp EECCSCCEECS
T ss_pred EEecCcCCcCC
Confidence 77888877765
No 8
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=2.9e-14 Score=98.89 Aligned_cols=89 Identities=20% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~ 82 (163)
.++|+.|++++|++++..|..+.++++|+.|++++|++++..+..|..+++|+.|++++|++++.++. ...+.+|+.++
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 36799999999999987788999999999999999999954445578999999999999999988876 57789999999
Q ss_pred ccCCCCCCCC
Q 031242 83 YEGNKGLYGP 92 (163)
Q Consensus 83 ~~~n~~lc~~ 92 (163)
+.+|++.|.+
T Consensus 112 L~~N~~~c~~ 121 (174)
T 2r9u_A 112 LYNNPWDCEC 121 (174)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCccccc
Confidence 9999988864
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=2.3e-14 Score=115.89 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=82.7
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-ccc-CCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQL-QSF 78 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l-~~l 78 (163)
+..+++|++|++++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+ .+|
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence 457889999999999999888899999999999999999999877888999999999999999999998875 344 689
Q ss_pred CcccccCCCCCCC
Q 031242 79 SPTSYEGNKGLYG 91 (163)
Q Consensus 79 ~~l~~~~n~~lc~ 91 (163)
+.+++++||+.|.
T Consensus 570 ~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 570 AFLNLTQNDFACT 582 (635)
T ss_dssp CEEECTTCCBCCS
T ss_pred CEEEeeCCCCccc
Confidence 9999999999996
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=6.8e-14 Score=100.40 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=57.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
.++++|++|+|++|.++...+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++. ...+.+++.
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 4456666666666666633333356666666666666666655566666667777777777777766654 345666777
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++.+|++.|.
T Consensus 157 L~L~~N~~~c~ 167 (220)
T 2v9t_B 157 MHLAQNPFICD 167 (220)
T ss_dssp EECCSSCEECS
T ss_pred EEeCCCCcCCC
Confidence 77777777664
No 11
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=5.7e-14 Score=106.77 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEccC-CCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCC
Q 031242 1 MGQFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79 (163)
Q Consensus 1 l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~ 79 (163)
++.+++|+.|+|++ |.+++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.++.......|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 35678899999996 99997666889999999999999999998888899999999999999999998887765444599
Q ss_pred cccccCCCCCCC
Q 031242 80 PTSYEGNKGLYG 91 (163)
Q Consensus 80 ~l~~~~n~~lc~ 91 (163)
.+.+.+|++.|.
T Consensus 107 ~l~l~~N~~~c~ 118 (347)
T 2ifg_A 107 ELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEeeCCCccCC
Confidence 999999999885
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.4e-13 Score=99.21 Aligned_cols=89 Identities=24% Similarity=0.292 Sum_probs=62.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.++.. ..+.+++.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 45666777777777777444455667777777777777777 66777777777777777777777666543 55677777
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++.+|++.|.
T Consensus 164 L~l~~N~~~c~ 174 (229)
T 3e6j_A 164 AYLFGNPWDCE 174 (229)
T ss_dssp EECTTSCBCTT
T ss_pred EEeeCCCccCC
Confidence 77888877765
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=2e-13 Score=94.52 Aligned_cols=88 Identities=22% Similarity=0.184 Sum_probs=40.7
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 3444555555555554333333444555555555555554333333444455555555555554444332 334444555
Q ss_pred cccCCCCCC
Q 031242 82 SYEGNKGLY 90 (163)
Q Consensus 82 ~~~~n~~lc 90 (163)
++++|+..|
T Consensus 130 ~l~~N~~~~ 138 (177)
T 2o6r_A 130 WLHTNPWDC 138 (177)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeec
Confidence 555554444
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.46 E-value=5.8e-14 Score=117.09 Aligned_cols=88 Identities=33% Similarity=0.513 Sum_probs=82.1
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+.+++|+.||+++|+++|.+|..++++++|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|.. ..+..|+.
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999876 77889999
Q ss_pred ccccCCCCC
Q 031242 81 TSYEGNKGL 89 (163)
Q Consensus 81 l~~~~n~~l 89 (163)
+++++|+..
T Consensus 709 L~ls~N~l~ 717 (768)
T 3rgz_A 709 IDLSNNNLS 717 (768)
T ss_dssp EECCSSEEE
T ss_pred EECcCCccc
Confidence 999998643
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=5.4e-13 Score=94.53 Aligned_cols=89 Identities=26% Similarity=0.212 Sum_probs=47.9
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 4455555555555555333333455555555555555555333334555556666666666655554432 445556666
Q ss_pred cccCCCCCCC
Q 031242 82 SYEGNKGLYG 91 (163)
Q Consensus 82 ~~~~n~~lc~ 91 (163)
++++|++.|.
T Consensus 154 ~l~~N~~~~~ 163 (208)
T 2o6s_A 154 WLHDNPWDCT 163 (208)
T ss_dssp ECCSCCBCCC
T ss_pred EecCCCeecC
Confidence 6666655554
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=6e-13 Score=96.97 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++. ...+.+++.
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 3456666666666666644444456666777777777777644444566677777777777777766653 345667777
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++.+|++.|.
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 77777776664
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=9.8e-13 Score=96.99 Aligned_cols=91 Identities=25% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 34556666666666666444444566666666666666666444444566666666666666666655543 45666666
Q ss_pred ccccCCCCCCCC
Q 031242 81 TSYEGNKGLYGP 92 (163)
Q Consensus 81 l~~~~n~~lc~~ 92 (163)
+++.+|++.|..
T Consensus 210 L~l~~N~~~~~~ 221 (272)
T 3rfs_A 210 IWLHDNPWDCTC 221 (272)
T ss_dssp EECCSSCBCCCT
T ss_pred EEccCCCccccC
Confidence 777777666653
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=1.1e-12 Score=97.69 Aligned_cols=89 Identities=24% Similarity=0.171 Sum_probs=46.9
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
++++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++..++.......++.+.
T Consensus 122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence 34445555555555553333334455555555555555552222233445555555555555554444444455566777
Q ss_pred ccCCCCCCC
Q 031242 83 YEGNKGLYG 91 (163)
Q Consensus 83 ~~~n~~lc~ 91 (163)
+.+|++.|.
T Consensus 202 L~~Np~~C~ 210 (290)
T 1p9a_G 202 LHGNPWLCN 210 (290)
T ss_dssp CCSCCBCCS
T ss_pred eCCCCccCc
Confidence 778888774
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=2.2e-12 Score=94.97 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 4455555555555555333333555556666666666655433344555666666666666666554432 345566666
Q ss_pred cccCCCCCCC
Q 031242 82 SYEGNKGLYG 91 (163)
Q Consensus 82 ~~~~n~~lc~ 91 (163)
++.+|++.|.
T Consensus 211 ~l~~N~~~c~ 220 (270)
T 2o6q_A 211 QLQENPWDCT 220 (270)
T ss_dssp ECCSSCBCCS
T ss_pred EecCCCeeCC
Confidence 6666666664
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=1.4e-12 Score=93.58 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccccc
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE 84 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~ 84 (163)
+++.|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|+++..++.. ..+.+|+.++++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 3445555555555333334445555555555555555444444555555555555555555443332 334444444444
Q ss_pred CC
Q 031242 85 GN 86 (163)
Q Consensus 85 ~n 86 (163)
+|
T Consensus 113 ~N 114 (220)
T 2v9t_B 113 AN 114 (220)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=94.24 Aligned_cols=87 Identities=22% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|.+++..+..|.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+|+.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 35667777777777777555556777777777777777777655666777777777777777777765543 56677777
Q ss_pred ccccCCCC
Q 031242 81 TSYEGNKG 88 (163)
Q Consensus 81 l~~~~n~~ 88 (163)
+++++|..
T Consensus 134 L~L~~N~l 141 (220)
T 2v70_A 134 LSLYDNQI 141 (220)
T ss_dssp EECTTSCC
T ss_pred EECCCCcC
Confidence 77777643
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.36 E-value=1.2e-12 Score=102.58 Aligned_cols=92 Identities=27% Similarity=0.230 Sum_probs=65.7
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+++|+.
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 45667777777777776555666777777777777777777666777777777777777777777666544 56677777
Q ss_pred ccccCCCCCCCCC
Q 031242 81 TSYEGNKGLYGPP 93 (163)
Q Consensus 81 l~~~~n~~lc~~~ 93 (163)
+++++|+..|..|
T Consensus 400 L~l~~N~l~~~~~ 412 (455)
T 3v47_A 400 IWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCcccCCC
Confidence 7788887777643
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=3.5e-12 Score=91.88 Aligned_cols=83 Identities=25% Similarity=0.246 Sum_probs=52.0
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSY 83 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~ 83 (163)
++|+.|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++.++.. ..+.+|+.+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45666777777766555666666666777777777666333344566666667777766666655543 45666666666
Q ss_pred cCCC
Q 031242 84 EGNK 87 (163)
Q Consensus 84 ~~n~ 87 (163)
++|.
T Consensus 120 s~N~ 123 (229)
T 3e6j_A 120 CCNK 123 (229)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 6654
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=102.55 Aligned_cols=90 Identities=22% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 45678888888888888777888888999999999999998777888889999999999999999877765 56889999
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++++|++.|.
T Consensus 284 L~L~~Np~~Cd 294 (440)
T 3zyj_A 284 IHLHHNPWNCN 294 (440)
T ss_dssp EECCSSCEECS
T ss_pred EEcCCCCccCC
Confidence 99999999886
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=1.6e-12 Score=105.20 Aligned_cols=93 Identities=22% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccC-CCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQ-SFS 79 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~-~l~ 79 (163)
++.+++|+.|++++|.+++..|..+.++++|+.|++++|++++..|..+..+++|+.|++++|+++..++....+. +++
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence 3568899999999999998888889999999999999999998889999999999999999999997666656665 589
Q ss_pred cccccCCCCCCCCC
Q 031242 80 PTSYEGNKGLYGPP 93 (163)
Q Consensus 80 ~l~~~~n~~lc~~~ 93 (163)
.+++++|++.|..+
T Consensus 549 ~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 549 FFNLTNNSVACICE 562 (606)
T ss_dssp EEECCSCCCCCSST
T ss_pred EEEccCCCcccCCc
Confidence 99999999998643
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=1.7e-12 Score=102.03 Aligned_cols=91 Identities=24% Similarity=0.160 Sum_probs=77.9
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+++.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 45677888888888888777888889999999999999999777888899999999999999999877765 56888999
Q ss_pred ccccCCCCCCCC
Q 031242 81 TSYEGNKGLYGP 92 (163)
Q Consensus 81 l~~~~n~~lc~~ 92 (163)
+++++|++.|..
T Consensus 295 L~L~~Np~~CdC 306 (452)
T 3zyi_A 295 LHLHHNPWNCDC 306 (452)
T ss_dssp EECCSSCEECST
T ss_pred EEccCCCcCCCC
Confidence 999999998863
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.2e-12 Score=86.76 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=40.8
Q ss_pred CCCCeEEccCCCCC-CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242 5 KSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS 82 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~ 82 (163)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|.. ..+.+++.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 45555555555555555555555532 44455555555555555555433332 2345555555
Q ss_pred ccCC
Q 031242 83 YEGN 86 (163)
Q Consensus 83 ~~~n 86 (163)
+++|
T Consensus 95 ls~N 98 (149)
T 2je0_A 95 LSGN 98 (149)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5544
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=5e-12 Score=88.92 Aligned_cols=84 Identities=29% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY 83 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~ 83 (163)
++++.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++.+|. ...+.+|+.+++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57899999999999 8899999999999999999999977777899999999999999999998875 467889999999
Q ss_pred cCCCCC
Q 031242 84 EGNKGL 89 (163)
Q Consensus 84 ~~n~~l 89 (163)
++|...
T Consensus 110 ~~N~l~ 115 (193)
T 2wfh_A 110 HGNDIS 115 (193)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 998643
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=7.4e-12 Score=91.18 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=57.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 45667777777777777655566677777777777777777444455666777777777777777665543 45666666
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 136 L~Ls~N~ 142 (251)
T 3m19_A 136 LRLNTNQ 142 (251)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 7766664
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=1.1e-11 Score=87.77 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=39.1
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccccc
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE 84 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~ 84 (163)
+++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++.++.. ..+.+|+.++++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 4555555555555333333445555555555555555322333445555555555555555444332 344455555554
Q ss_pred CC
Q 031242 85 GN 86 (163)
Q Consensus 85 ~n 86 (163)
+|
T Consensus 109 ~N 110 (208)
T 2o6s_A 109 TN 110 (208)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=1e-12 Score=98.86 Aligned_cols=85 Identities=33% Similarity=0.597 Sum_probs=55.2
Q ss_pred CCCCCCeEEccC-CCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 3 QFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+.+|+.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 456666667663 6666666666666666777777766666666666666666677777766666555543 45666666
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 154 L~L~~N~ 160 (313)
T 1ogq_A 154 ITFDGNR 160 (313)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 6666654
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.8e-12 Score=95.88 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~ 82 (163)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++. ...+.+++.++
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 34444444444444422222344444444444444444433344444444444555555444443332 23344555555
Q ss_pred ccCCCCCCC
Q 031242 83 YEGNKGLYG 91 (163)
Q Consensus 83 ~~~n~~lc~ 91 (163)
+++|++.|.
T Consensus 232 l~~N~~~c~ 240 (285)
T 1ozn_A 232 LNDNPWVCD 240 (285)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCC
Confidence 555555443
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=3.5e-12 Score=87.38 Aligned_cols=81 Identities=25% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC--CCCcccCCCCcc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFSPT 81 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l~~l 81 (163)
+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+ +....+.+|+.+
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 34445555555554422 34444555555555555555434444444555555555555555432 223344445555
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++++|
T Consensus 126 ~l~~N 130 (168)
T 2ell_A 126 DLFNC 130 (168)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 55544
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=6.8e-12 Score=93.62 Aligned_cols=85 Identities=32% Similarity=0.384 Sum_probs=47.8
Q ss_pred CCCCCCeEEccCCCCCC-CCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 3 QFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
.+++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++. ...+.+|+.
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 45556666666666553 3555555666666666666666544455555566666666666665554442 234555555
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 228 L~L~~N~ 234 (306)
T 2z66_A 228 LDYSLNH 234 (306)
T ss_dssp EECTTSC
T ss_pred eECCCCC
Confidence 5555554
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.28 E-value=7.8e-12 Score=94.65 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~ 82 (163)
+++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|.. ..+.+|+.++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 677777777777777 77777777777777777777777 46666777777777777777777666653 5667777777
Q ss_pred ccCCCCCC
Q 031242 83 YEGNKGLY 90 (163)
Q Consensus 83 ~~~n~~lc 90 (163)
+.+|....
T Consensus 260 L~~n~~~~ 267 (328)
T 4fcg_A 260 LKDCSNLL 267 (328)
T ss_dssp CTTCTTCC
T ss_pred CCCCCchh
Confidence 77765443
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=6.1e-12 Score=101.69 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++.++. ...+.+|+.
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 4556666666666666644444566666666666666666643344556666666666666666655543 245556666
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 153 L~Ls~N~ 159 (635)
T 4g8a_A 153 LNVAHNL 159 (635)
T ss_dssp EECCSSC
T ss_pred eccccCc
Confidence 6665553
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=6.8e-12 Score=85.92 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCc--hhhcCCCCcccccccCccccCcCC----CCcc
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSYNNLVGKIP----TSTQ 74 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L~l~~N~l~~~~p----~~~~ 74 (163)
++.+++|+.|++++|.+++.+|..+..+++|++|++++|.+++ +| ..+..+++|+.|++++|.+++.++ ....
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 4678999999999999997788888889999999999999994 44 789999999999999999998877 4467
Q ss_pred cCCCCcccccCCCC
Q 031242 75 LQSFSPTSYEGNKG 88 (163)
Q Consensus 75 l~~l~~l~~~~n~~ 88 (163)
++.++.+++.+|..
T Consensus 146 l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 146 LPQLTYLDGYDRED 159 (168)
T ss_dssp CSSCCEETTEETTS
T ss_pred CccCcEecCCCCCh
Confidence 88999998888754
No 38
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=9.1e-12 Score=87.40 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=74.6
Q ss_pred CCCCeEEccCCCCCCCCCc-ccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242 5 KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS 82 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~ 82 (163)
.+++.|++++|.+++..+. .++.+++|++|++++|.+++..|..+..+++|+.|++++|++++.++. ...+.+|+.++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3789999999999955544 488999999999999999988899999999999999999999998886 46789999999
Q ss_pred ccCCCCC
Q 031242 83 YEGNKGL 89 (163)
Q Consensus 83 ~~~n~~l 89 (163)
+++|...
T Consensus 109 L~~N~l~ 115 (192)
T 1w8a_A 109 LYDNQIS 115 (192)
T ss_dssp CCSSCCC
T ss_pred CCCCcCC
Confidence 9998643
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.25 E-value=6.5e-12 Score=100.78 Aligned_cols=90 Identities=28% Similarity=0.304 Sum_probs=57.3
Q ss_pred CCCCCCeEEccCCCCC-CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 3 QFKSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
++++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+++.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 4556666666666655 356666666666666666666666555666666666777777777666665543 45666666
Q ss_pred ccccCCCCCCCC
Q 031242 81 TSYEGNKGLYGP 92 (163)
Q Consensus 81 l~~~~n~~lc~~ 92 (163)
+++++|+..|..
T Consensus 523 L~l~~N~~~~~~ 534 (570)
T 2z63_A 523 IWLHTNPWDCSC 534 (570)
T ss_dssp EECCSSCBCCCT
T ss_pred EEecCCcccCCC
Confidence 667777666643
No 40
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=6.3e-12 Score=101.79 Aligned_cols=82 Identities=27% Similarity=0.331 Sum_probs=53.3
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC-C-CCcccCCCCc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI-P-TSTQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~-p-~~~~l~~l~~ 80 (163)
.+++|+.|++++|.++ .+|..++++++|+.|++++|.+++ +| .++.+++|+.|++++|++++.+ | ....+.+|+.
T Consensus 461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 4556666677666666 666666666667777777776663 55 5666666777777777666663 3 3355666666
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|+
T Consensus 538 L~L~~N~ 544 (567)
T 1dce_A 538 LNLQGNS 544 (567)
T ss_dssp EECTTSG
T ss_pred EEecCCc
Confidence 6666665
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=3.6e-11 Score=88.55 Aligned_cols=87 Identities=22% Similarity=0.213 Sum_probs=62.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+.+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.++.. ..+.+|+.
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 45677788888888877555556777788888888888877555555677777888888888777666654 56677777
Q ss_pred ccccCCCC
Q 031242 81 TSYEGNKG 88 (163)
Q Consensus 81 l~~~~n~~ 88 (163)
+++++|..
T Consensus 162 L~l~~n~l 169 (272)
T 3rfs_A 162 LDLSYNQL 169 (272)
T ss_dssp EECCSSCC
T ss_pred EECCCCCc
Confidence 77777643
No 42
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=7.2e-12 Score=88.11 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcc-ccCcCCCCcccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN-LVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~l~~l~~l 81 (163)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|+ +.. +|....+++|+.+
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L 164 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSL 164 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEE
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEE
Confidence 34555555555555554445555555555555555555554445555555555555555554 332 2333444555555
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++++|
T Consensus 165 ~l~~n 169 (197)
T 4ezg_A 165 NIQFD 169 (197)
T ss_dssp ECTTB
T ss_pred ECCCC
Confidence 55444
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.23 E-value=3e-11 Score=89.98 Aligned_cols=83 Identities=30% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
.+++|+.|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++.++.. ..+.+|+.+
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 3455566666666655 55555555555555666655555333344555555555555555555544433 344555555
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++++|
T Consensus 154 ~L~~N 158 (290)
T 1p9a_G 154 SLANN 158 (290)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55554
No 44
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=3.6e-11 Score=82.99 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~ 82 (163)
.++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++.. ..+.+++.++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 468999999999999666667899999999999999999555566789999999999999999888764 6788999999
Q ss_pred ccCCCC
Q 031242 83 YEGNKG 88 (163)
Q Consensus 83 ~~~n~~ 88 (163)
+++|..
T Consensus 107 l~~N~l 112 (177)
T 2o6r_A 107 LDTNQL 112 (177)
T ss_dssp CCSSCC
T ss_pred CcCCcc
Confidence 998854
No 45
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=8.2e-12 Score=103.77 Aligned_cols=85 Identities=27% Similarity=0.296 Sum_probs=56.1
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
++++|++|+|++|.++ .+|..++++++|+.|+|++|.|+ .+|..++.+++|+.|++++|.++.++.....+.+|+.++
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 3556666666666666 66666666777777777777766 666666667777777777776665444455666666677
Q ss_pred ccCCCCC
Q 031242 83 YEGNKGL 89 (163)
Q Consensus 83 ~~~n~~l 89 (163)
+++|...
T Consensus 323 L~~N~l~ 329 (727)
T 4b8c_D 323 VEGNPLE 329 (727)
T ss_dssp CTTSCCC
T ss_pred CCCCccC
Confidence 7666543
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=1.3e-11 Score=94.58 Aligned_cols=86 Identities=24% Similarity=0.221 Sum_probs=64.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
++++|+.|+|++|++++..|..|.++++|++|++++|.+++..+..|..+++|+.|++++|++.+..|.. ..+.+|+.+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 6778888888888888555567888888888888888887555556777888888888888887765543 567777777
Q ss_pred cccCCCC
Q 031242 82 SYEGNKG 88 (163)
Q Consensus 82 ~~~~n~~ 88 (163)
++++|..
T Consensus 142 ~L~~N~l 148 (361)
T 2xot_A 142 YLSQNQI 148 (361)
T ss_dssp ECCSSCC
T ss_pred ECCCCcC
Confidence 7777743
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.20 E-value=9.4e-12 Score=98.20 Aligned_cols=90 Identities=22% Similarity=0.229 Sum_probs=79.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 46788999999999999766778899999999999999999888889999999999999999999877754 56789999
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++++|++.|.
T Consensus 325 L~l~~N~l~c~ 335 (477)
T 2id5_A 325 LILDSNPLACD 335 (477)
T ss_dssp EECCSSCEECS
T ss_pred EEccCCCccCc
Confidence 99999998885
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.20 E-value=2e-11 Score=92.44 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+++++|+.|++++|.++ .+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.. ..+.+|+.
T Consensus 203 ~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 46789999999999999 67888999999999999999999999999999999999999999988888754 67889999
Q ss_pred ccccCCCCCCCCC
Q 031242 81 TSYEGNKGLYGPP 93 (163)
Q Consensus 81 l~~~~n~~lc~~~ 93 (163)
+++++|+.....|
T Consensus 282 L~L~~n~~~~~iP 294 (328)
T 4fcg_A 282 LDLRGCVNLSRLP 294 (328)
T ss_dssp EECTTCTTCCCCC
T ss_pred EeCCCCCchhhcc
Confidence 9999987665443
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.20 E-value=6.1e-12 Score=101.85 Aligned_cols=89 Identities=24% Similarity=0.223 Sum_probs=74.1
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++| .+++++|++++.+|.. ..+.+++.
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 356778888888888887777888888888888888888888888888888888 8888888888877764 56788888
Q ss_pred ccccCCCCCCC
Q 031242 81 TSYEGNKGLYG 91 (163)
Q Consensus 81 l~~~~n~~lc~ 91 (163)
+++.+|++.|.
T Consensus 552 L~l~~N~~~c~ 562 (606)
T 3t6q_A 552 INLRQNPLDCT 562 (606)
T ss_dssp EECTTCCEECS
T ss_pred EeCCCCCcccc
Confidence 99999998885
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=6.4e-12 Score=84.41 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=75.2
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC--CCCcccCCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSF 78 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l 78 (163)
+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+ .....++++
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 35788999999999999954 77899999999999999999778988888999999999999999854 455778899
Q ss_pred CcccccCCCC
Q 031242 79 SPTSYEGNKG 88 (163)
Q Consensus 79 ~~l~~~~n~~ 88 (163)
+.+++++|+.
T Consensus 116 ~~L~l~~N~l 125 (149)
T 2je0_A 116 KSLDLFNCEV 125 (149)
T ss_dssp CEEECTTCGG
T ss_pred CEEeCcCCcc
Confidence 9999998853
No 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.5e-11 Score=92.96 Aligned_cols=84 Identities=25% Similarity=0.152 Sum_probs=68.5
Q ss_pred CCCCeEEccCCCCCCCCCcccC-CCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS 82 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~ 82 (163)
..++.|+|++|++++..+..+. ++++|+.|++++|.+++..|..|..+++|+.|++++|++++.++.. ..+.+|+.++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578899999999865666676 8899999999999998666677888999999999999998877653 6778888888
Q ss_pred ccCCCC
Q 031242 83 YEGNKG 88 (163)
Q Consensus 83 ~~~n~~ 88 (163)
+++|..
T Consensus 119 L~~N~i 124 (361)
T 2xot_A 119 LYNNHI 124 (361)
T ss_dssp CCSSCC
T ss_pred CCCCcc
Confidence 888854
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.19 E-value=2.2e-11 Score=99.87 Aligned_cols=91 Identities=22% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCCCCCCeEEccCCCCCCCCCc-ccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-c-ccCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-T-QLQSF 78 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~-~l~~l 78 (163)
.++++|++|++++|+++ .+|. .|.++++|+.|++++|++++..+..+..+++|+.|++++|++++.++.. . .+.++
T Consensus 533 ~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred cCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 45778888888888888 5554 5888999999999999998544555788899999999999998877654 2 57889
Q ss_pred CcccccCCCCCCCCC
Q 031242 79 SPTSYEGNKGLYGPP 93 (163)
Q Consensus 79 ~~l~~~~n~~lc~~~ 93 (163)
+.+++++|++.|..+
T Consensus 612 ~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 612 TELDMRFNPFDCTCE 626 (680)
T ss_dssp SEEECTTCCCCBCCC
T ss_pred CEEEccCCCcccCCc
Confidence 999999999999754
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=7.2e-11 Score=86.79 Aligned_cols=87 Identities=26% Similarity=0.294 Sum_probs=66.1
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++.. ..+.+|+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 45778888888888888555566778888888888888888666666778888888888888888766653 56777777
Q ss_pred ccccCCCC
Q 031242 81 TSYEGNKG 88 (163)
Q Consensus 81 l~~~~n~~ 88 (163)
+++++|..
T Consensus 162 L~L~~n~l 169 (270)
T 2o6q_A 162 LRLYNNQL 169 (270)
T ss_dssp EECCSSCC
T ss_pred eEecCCcC
Confidence 77777743
No 54
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=2.2e-11 Score=85.65 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=74.2
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~ 79 (163)
++.+++|+.|++++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|+.|++++|++++.. ....+++|+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 4578999999999999997788889999999999999998 65 777 6899999999999999999754 667889999
Q ss_pred cccccCCC
Q 031242 80 PTSYEGNK 87 (163)
Q Consensus 80 ~l~~~~n~ 87 (163)
.+++.+|+
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 99999886
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=6.7e-11 Score=87.42 Aligned_cols=86 Identities=26% Similarity=0.292 Sum_probs=55.4
Q ss_pred CCCCCCCeEEccCCC-CCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCC
Q 031242 2 GQFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~ 79 (163)
.++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+.++. ...+.+|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 456667777777775 5544456666777777777777777655566666667777777777776665554 24556666
Q ss_pred cccccCCC
Q 031242 80 PTSYEGNK 87 (163)
Q Consensus 80 ~l~~~~n~ 87 (163)
.+++++|.
T Consensus 157 ~L~l~~n~ 164 (285)
T 1ozn_A 157 HLFLHGNR 164 (285)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66666653
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=3.3e-11 Score=94.29 Aligned_cols=87 Identities=25% Similarity=0.314 Sum_probs=60.7
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+|+.
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 45667777777777777666667777777777777777777656666777777777777777777665543 56677777
Q ss_pred ccccCCCC
Q 031242 81 TSYEGNKG 88 (163)
Q Consensus 81 l~~~~n~~ 88 (163)
+++++|..
T Consensus 376 L~L~~N~l 383 (455)
T 3v47_A 376 LALDTNQL 383 (455)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 77777643
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.17 E-value=5.2e-11 Score=95.88 Aligned_cols=89 Identities=24% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCcc-cCCC----------------------cccceeccccccCCCcCchhhcCCCCcccc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSS-FGNL----------------------KQIESLDLSMNNLSGKIPSQLASLNFLSVL 58 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l----------------------~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L 58 (163)
.++++|+.|++++|.+++.+|.. +..+ ++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence 34566666666666666434432 3333 46677777777777 677766678888888
Q ss_pred cccCccccCcCCC-CcccCCCCcccccCCCCCCC
Q 031242 59 NLSYNNLVGKIPT-STQLQSFSPTSYEGNKGLYG 91 (163)
Q Consensus 59 ~l~~N~l~~~~p~-~~~l~~l~~l~~~~n~~lc~ 91 (163)
++++|+++..++. ...+..++.+++++|++.|.
T Consensus 479 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 8888888866655 46677888888888888775
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=4.7e-11 Score=96.68 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. ...+.+|+.
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 3556666666666666654555566666666666666666655566666666666666666666555432 245555555
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 133 L~L~~n~ 139 (606)
T 3vq2_A 133 LNVAHNF 139 (606)
T ss_dssp EECCSSC
T ss_pred EeCCCCc
Confidence 5555553
No 59
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=6.7e-11 Score=81.47 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=62.3
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS 72 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 72 (163)
+.++++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+....+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 457899999999999999666666899999999999999999655667999999999999999998766543
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.16 E-value=5.8e-11 Score=87.38 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=37.0
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l 81 (163)
++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+. ...+.+|+.+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 344455555555554433333444445555555555544433334444444444444444444433331 2333344444
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++++|
T Consensus 130 ~l~~n 134 (276)
T 2z62_A 130 NVAHN 134 (276)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 44333
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.14 E-value=3.5e-11 Score=90.25 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCCCCCeEEccCCCCCCCCCccc--CCCcccceeccccccCCCcCchhhcCC-----CCcccccccCccccCcCCC-Ccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSF--GNLKQIESLDLSMNNLSGKIPSQLASL-----NFLSVLNLSYNNLVGKIPT-STQ 74 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~ls~N~l~g~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~-~~~ 74 (163)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+.+|. ...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46788888888888887788776 7788888888888888855 7666665 7888888888888777654 356
Q ss_pred cCCCCcccccCCC
Q 031242 75 LQSFSPTSYEGNK 87 (163)
Q Consensus 75 l~~l~~l~~~~n~ 87 (163)
+.+++.+++++|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 7777777777775
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=9e-11 Score=93.45 Aligned_cols=88 Identities=27% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCCCCeEEccCCCCCCCCCcc-cCCC----------------------cccceeccccccCCCcCchhhcCCCCccccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSS-FGNL----------------------KQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~-~~~l----------------------~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 59 (163)
.+++|+.|++++|.+++.+|.. +..+ ++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence 4556666666666666434432 3333 45556666666665 5666555666777777
Q ss_pred ccCccccCcCCC-CcccCCCCcccccCCCCCCC
Q 031242 60 LSYNNLVGKIPT-STQLQSFSPTSYEGNKGLYG 91 (163)
Q Consensus 60 l~~N~l~~~~p~-~~~l~~l~~l~~~~n~~lc~ 91 (163)
+++|+++..++. ...+.+++.+++++|+..|.
T Consensus 451 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 777777654444 34566666677777766664
No 63
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=1.8e-11 Score=84.60 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPTS 82 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~ 82 (163)
++|+.|++++|.+++ + +.+..+++|++|++++|.+++..|..+..+++|+.|++++|++...++ ....+.+++.++
T Consensus 42 ~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 389999999999995 4 678899999999999999995433445889999999999999976554 456788899999
Q ss_pred ccCCCCC
Q 031242 83 YEGNKGL 89 (163)
Q Consensus 83 ~~~n~~l 89 (163)
+++|+..
T Consensus 120 l~~N~i~ 126 (176)
T 1a9n_A 120 ILRNPVT 126 (176)
T ss_dssp CCSSGGG
T ss_pred ecCCCCC
Confidence 9998753
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=89.88 Aligned_cols=86 Identities=27% Similarity=0.223 Sum_probs=59.1
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~ 79 (163)
.++++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+.++ ....+.+++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 456777777777777775556667777777777777777774333346777777777777777776554 235666777
Q ss_pred cccccCCC
Q 031242 80 PTSYEGNK 87 (163)
Q Consensus 80 ~l~~~~n~ 87 (163)
.+++++|.
T Consensus 153 ~L~l~~n~ 160 (353)
T 2z80_A 153 ILRVGNMD 160 (353)
T ss_dssp EEEEEESS
T ss_pred EEECCCCc
Confidence 77776663
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=3.6e-11 Score=83.05 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCc-ccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
++.+|+.|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|+.|++++|++++.++.. ..+.+++.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5678999999999999 5665 44444 999999999999954 57889999999999999999887666 67889999
Q ss_pred ccccCCCC
Q 031242 81 TSYEGNKG 88 (163)
Q Consensus 81 l~~~~n~~ 88 (163)
+++++|..
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 99998864
No 66
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=7.2e-11 Score=98.12 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=76.9
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.|+.++.....+.+|+.+
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 46788999999999999 89988889999999999999999 99999999999999999999999665556889999999
Q ss_pred cccCCCC
Q 031242 82 SYEGNKG 88 (163)
Q Consensus 82 ~~~~n~~ 88 (163)
++++|..
T Consensus 299 ~L~~N~l 305 (727)
T 4b8c_D 299 YFFDNMV 305 (727)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 9998854
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.13 E-value=7e-11 Score=94.51 Aligned_cols=86 Identities=23% Similarity=0.189 Sum_probs=56.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc--CCCCcccCCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK--IPTSTQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~l~~l~ 79 (163)
.++++|++|++++|++++..|..+.++++|++|++++|.+++..|..++.+++|++|++++|++++. ++....+.+|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 4566777777777777755556677777777777777777755555577777777777777777643 23345566666
Q ss_pred cccccCCC
Q 031242 80 PTSYEGNK 87 (163)
Q Consensus 80 ~l~~~~n~ 87 (163)
.+++++|.
T Consensus 127 ~L~L~~n~ 134 (549)
T 2z81_A 127 TLRIGNVE 134 (549)
T ss_dssp EEEEEESS
T ss_pred EEECCCCc
Confidence 66666654
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.12 E-value=6.8e-11 Score=95.72 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=49.2
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+. ...+.+|+.
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 4455666666666666655555566666666666666666655555566666666666666665554322 244555555
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 134 L~L~~n~ 140 (606)
T 3t6q_A 134 LYLGSNH 140 (606)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555553
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.7e-10 Score=93.71 Aligned_cols=86 Identities=23% Similarity=0.204 Sum_probs=48.7
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
+.+++|+.|++++|.+++..|..++++++|++|++++|.+++..+..|..+++|+.|++++|.+.+.+|. ...+.+|+.
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 3455666666666666654455556666666666666666632222345666666666666666655553 245555565
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 176 L~L~~N~ 182 (597)
T 3oja_B 176 LQLSSNR 182 (597)
T ss_dssp EECTTSC
T ss_pred EECcCCC
Confidence 6555553
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=86.84 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=51.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcc----cCCCcccceeccccccCCCcCchhhcCC---CCcccccccCccccCcCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSS----FGNLKQIESLDLSMNNLSGKIPSQLASL---NFLSVLNLSYNNLVGKIPTSTQ 74 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~g~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~ 74 (163)
+.+++|++|++++|+++ .+|.. ++.+++|++|++++|.+++..|..+..+ ++|+.|++++|+++..+...
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-- 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-- 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--
Confidence 35666777777777776 33332 3556677777777777776556655555 47777777777777443322
Q ss_pred cCCCCcccccCCC
Q 031242 75 LQSFSPTSYEGNK 87 (163)
Q Consensus 75 l~~l~~l~~~~n~ 87 (163)
..+++.+++++|.
T Consensus 271 ~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 271 PAKLRVLDLSSNR 283 (310)
T ss_dssp CSCCSCEECCSCC
T ss_pred cCCCCEEECCCCc
Confidence 2566666666664
No 71
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1.7e-10 Score=79.71 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=70.6
Q ss_pred CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccC
Q 031242 7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEG 85 (163)
Q Consensus 7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~ 85 (163)
-+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+|+.+++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999998 8888765 89999999999999877889999999999999999999988765 6789999999999
Q ss_pred CCC
Q 031242 86 NKG 88 (163)
Q Consensus 86 n~~ 88 (163)
|..
T Consensus 91 N~l 93 (174)
T 2r9u_A 91 NHL 93 (174)
T ss_dssp SCC
T ss_pred Ccc
Confidence 864
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.11 E-value=7.8e-11 Score=87.86 Aligned_cols=87 Identities=24% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCC-cCchhhcCCCCcccccccCccccCcCCCC-cccCCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~ 79 (163)
..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++.+|.. ..+.+|+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 467889999999999887778888889999999999998886 47888888999999999999998876654 5678888
Q ss_pred cccccCCCC
Q 031242 80 PTSYEGNKG 88 (163)
Q Consensus 80 ~l~~~~n~~ 88 (163)
.+++++|..
T Consensus 203 ~L~L~~N~l 211 (306)
T 2z66_A 203 VLNMSHNNF 211 (306)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCcc
Confidence 888888864
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.11 E-value=1.2e-10 Score=91.48 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=40.2
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP 70 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p 70 (163)
.++++|+.|++++|.+++..|..|.++++|++|++++|.+++..+..+..+++|+.|++++|++...++
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence 345566666666666665455556666666666666666663333445556666666666666654443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=1.1e-10 Score=85.95 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc-CCC-CcccCCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK-IPT-STQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~-~p~-~~~l~~l~ 79 (163)
.++++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +|. ...+.+|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 3456666666666666654445566666666666666666644443455566666666666666542 132 24455555
Q ss_pred cccccCC
Q 031242 80 PTSYEGN 86 (163)
Q Consensus 80 ~l~~~~n 86 (163)
.+++++|
T Consensus 153 ~L~Ls~N 159 (276)
T 2z62_A 153 HLDLSSN 159 (276)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555555
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.11 E-value=2.4e-10 Score=87.98 Aligned_cols=85 Identities=25% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh-hcCCCCcccccccCccccCcCCC-CcccCCCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGKIPT-STQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~ 79 (163)
..+++|++|++++|.+++..|..++++++|++|++++|.++ .+|.. +..+++|++|++++|.+.+.++. ...+.+++
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 34555666666666665444455555666666666666665 34433 35556666666666666555443 24455555
Q ss_pred cccccCCC
Q 031242 80 PTSYEGNK 87 (163)
Q Consensus 80 ~l~~~~n~ 87 (163)
.+++++|.
T Consensus 169 ~L~l~~n~ 176 (390)
T 3o6n_A 169 NLQLSSNR 176 (390)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 55555553
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.10 E-value=1.6e-10 Score=87.23 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (163)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++..++....+.+|+.++++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 57888999999998776778888899999999999998766677888899999999999888665556778888888888
Q ss_pred CCCCCC
Q 031242 85 GNKGLY 90 (163)
Q Consensus 85 ~n~~lc 90 (163)
+|....
T Consensus 273 ~N~l~~ 278 (332)
T 2ft3_A 273 TNNITK 278 (332)
T ss_dssp SSCCCB
T ss_pred CCCCCc
Confidence 886443
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.10 E-value=1.3e-10 Score=87.60 Aligned_cols=84 Identities=25% Similarity=0.233 Sum_probs=71.3
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (163)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...+.....+..++.++++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 67899999999998777888899999999999999998766778888999999999999998666666778888888888
Q ss_pred CCCC
Q 031242 85 GNKG 88 (163)
Q Consensus 85 ~n~~ 88 (163)
+|..
T Consensus 272 ~N~i 275 (330)
T 1xku_A 272 NNNI 275 (330)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 8864
No 78
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=91.71 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=38.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
++++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|+.|++++|++.+.++.. ..+.+|+.+
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 3445555555555555444444555555555555555554222223444455555555555444443322 333444444
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++.+|
T Consensus 134 ~l~~n 138 (477)
T 2id5_A 134 EVGDN 138 (477)
T ss_dssp EECCT
T ss_pred ECCCC
Confidence 44333
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.09 E-value=1.9e-10 Score=94.11 Aligned_cols=83 Identities=23% Similarity=0.289 Sum_probs=54.6
Q ss_pred CCCCCeEEccCCCCCCCCCcccC--CCcccceeccccccCCCcCchhhcCCCCcccccc------cCccccCcCCCC-cc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFG--NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL------SYNNLVGKIPTS-TQ 74 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~-~~ 74 (163)
+++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 346777777777777 6666665 67777777777777774 6766667777777777 345555555543 55
Q ss_pred cCCCCcccccCCCC
Q 031242 75 LQSFSPTSYEGNKG 88 (163)
Q Consensus 75 l~~l~~l~~~~n~~ 88 (163)
+.+|+.+++++|..
T Consensus 565 l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 565 CPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcC
Confidence 66666677666654
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.09 E-value=1.8e-10 Score=90.16 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=49.2
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
.++++|++|+|++|.+++..+..|.++++|++|++++|.++...+..+..+++|+.|++++|++...++.. ..+.+|+.
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 45566666666666666444456666666666666666666333345666666666666666666554422 33444444
Q ss_pred ccccC
Q 031242 81 TSYEG 85 (163)
Q Consensus 81 l~~~~ 85 (163)
+++.+
T Consensus 165 L~l~~ 169 (440)
T 3zyj_A 165 LDLGE 169 (440)
T ss_dssp EECCC
T ss_pred eCCCC
Confidence 44444
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.08 E-value=1.2e-10 Score=87.37 Aligned_cols=84 Identities=21% Similarity=0.200 Sum_probs=42.0
Q ss_pred CCCCCCCeEEccCCCCCC--CCC-cccCCCcccceeccccccCCCcCc-hhhcCCCCcccccccCccccCcCCCCcccCC
Q 031242 2 GQFKSLYALNMSHNALTG--SIP-SSFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 77 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~ 77 (163)
+++++|+.|++++|.+++ .++ ..+..+++|+.|++++|.+++..| ..+..+++|+.|++++|+++..+.... .+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 345566666666666552 111 122345566666666666654443 233445566666666666553322222 45
Q ss_pred CCcccccCCC
Q 031242 78 FSPTSYEGNK 87 (163)
Q Consensus 78 l~~l~~~~n~ 87 (163)
++.+++++|.
T Consensus 276 L~~L~Ls~N~ 285 (312)
T 1wwl_A 276 LSVLDLSYNR 285 (312)
T ss_dssp EEEEECCSSC
T ss_pred ceEEECCCCC
Confidence 5555555553
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=97.95 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh--hcCCCCcccccccCccccCcCCC--CcccCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ--LASLNFLSVLNLSYNNLVGKIPT--STQLQS 77 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~--~~~l~~L~~L~l~~N~l~~~~p~--~~~l~~ 77 (163)
+++++|++|+|++|.+++..|..|+++++|++|++++|.+++.+|.. +..+++|+.|++++|.+.+..+. ...+.+
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 45566666666666666555666666666666666666666555544 66666666666666666655432 345566
Q ss_pred CCcccccCCC
Q 031242 78 FSPTSYEGNK 87 (163)
Q Consensus 78 l~~l~~~~n~ 87 (163)
|+.+++++|.
T Consensus 150 L~~L~Ls~N~ 159 (844)
T 3j0a_A 150 LKSIDFSSNQ 159 (844)
T ss_dssp CCEEEEESSC
T ss_pred CCEEECCCCc
Confidence 6666665553
No 83
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.08 E-value=4.3e-11 Score=97.97 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=63.3
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCC-cCchhhcCC------CCcccccccCccccCcCC--CC
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSG-KIPSQLASL------NFLSVLNLSYNNLVGKIP--TS 72 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g-~~p~~~~~l------~~L~~L~l~~N~l~~~~p--~~ 72 (163)
++++|++|++++|.+.+.+|..++++++|++|++++|. ++| .+|..++.+ ++|+.|++++|+++..+. ..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 68888999999998888888888888888888888887 887 677776665 677777777777773332 24
Q ss_pred cccCCCCcccccCCC
Q 031242 73 TQLQSFSPTSYEGNK 87 (163)
Q Consensus 73 ~~l~~l~~l~~~~n~ 87 (163)
..+.+|+.+++++|.
T Consensus 327 ~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 327 QKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred ccCCCCCEEeCcCCc
Confidence 556666666666554
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.08 E-value=1.1e-10 Score=89.92 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=75.6
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++...++.. ..+.+|+.+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 4788999999999999666678999999999999999999777788999999999999999999777664 678899999
Q ss_pred cccCCCC
Q 031242 82 SYEGNKG 88 (163)
Q Consensus 82 ~~~~n~~ 88 (163)
++++|..
T Consensus 147 ~L~~n~l 153 (390)
T 3o6n_A 147 SMSNNNL 153 (390)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 9988854
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=1.7e-10 Score=93.74 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l 81 (163)
++++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..++.+++|+.|++++|.+++.++.. ..+.+|+.+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 4789999999999999777779999999999999999999877788899999999999999999888775 688999999
Q ss_pred cccCCCCC
Q 031242 82 SYEGNKGL 89 (163)
Q Consensus 82 ~~~~n~~l 89 (163)
++++|...
T Consensus 153 ~Ls~N~l~ 160 (597)
T 3oja_B 153 SMSNNNLE 160 (597)
T ss_dssp ECCSSCCC
T ss_pred EeeCCcCC
Confidence 99988643
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.06 E-value=2.3e-10 Score=91.75 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC-CCcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP-TSTQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~l~~ 80 (163)
.++++|++|++++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.++ ....+.+|+.
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 345666666666666664445556666666666666666664444556666666666666666655443 2345555555
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++++|.
T Consensus 129 L~L~~n~ 135 (570)
T 2z63_A 129 LNVAHNL 135 (570)
T ss_dssp EECCSSC
T ss_pred EecCCCc
Confidence 5555553
No 87
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=1.9e-10 Score=93.12 Aligned_cols=79 Identities=29% Similarity=0.323 Sum_probs=68.1
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcC-chhhcCCCCcccccccCccccCcCCCCcc----c
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PSQLASLNFLSVLNLSYNNLVGKIPTSTQ----L 75 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~----l 75 (163)
++++++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+|.... +
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 3568999999999999995 77 8999999999999999999766 99999999999999999999998876532 4
Q ss_pred CCCCcc
Q 031242 76 QSFSPT 81 (163)
Q Consensus 76 ~~l~~l 81 (163)
++|+.+
T Consensus 560 p~L~~L 565 (567)
T 1dce_A 560 PSVSSI 565 (567)
T ss_dssp TTCSEE
T ss_pred cccCcc
Confidence 555544
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.06 E-value=3e-10 Score=85.74 Aligned_cols=66 Identities=30% Similarity=0.472 Sum_probs=31.9
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~ 69 (163)
++++|+.|++++|.+++..|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 3444455555555554333334444555555555555554 44444444555555555555544433
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.05 E-value=1.2e-10 Score=93.09 Aligned_cols=85 Identities=21% Similarity=0.160 Sum_probs=77.6
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY 83 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~ 83 (163)
++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++|++++|++++.+|. ...+.+|+.+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5799999999999977788999999999999999999988888999999999999999999998876 578899999999
Q ss_pred cCCCCC
Q 031242 84 EGNKGL 89 (163)
Q Consensus 84 ~~n~~l 89 (163)
++|...
T Consensus 106 s~n~l~ 111 (549)
T 2z81_A 106 MGNPYQ 111 (549)
T ss_dssp TTCCCS
T ss_pred CCCccc
Confidence 998643
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.04 E-value=2.9e-10 Score=85.70 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=67.6
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~ 80 (163)
.++++|+.|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++. ...+.+++.
T Consensus 168 ~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred cCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 35778888999998888 6776554 7888889999988877778888888899999999988887764 466778888
Q ss_pred ccccCCCCC
Q 031242 81 TSYEGNKGL 89 (163)
Q Consensus 81 l~~~~n~~l 89 (163)
+++++|...
T Consensus 245 L~L~~N~l~ 253 (330)
T 1xku_A 245 LHLNNNKLV 253 (330)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCc
Confidence 888888543
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=9.8e-11 Score=93.13 Aligned_cols=86 Identities=22% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
.+++|+.|++++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++.++....+.++..++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence 355666666666666633 22 2347777788888888874 45557788888888888888887666666777888888
Q ss_pred ccCCCCCCC
Q 031242 83 YEGNKGLYG 91 (163)
Q Consensus 83 ~~~n~~lc~ 91 (163)
+.+|+..|+
T Consensus 244 l~~N~l~c~ 252 (487)
T 3oja_A 244 LRGNGFHCG 252 (487)
T ss_dssp CTTCCBCHH
T ss_pred cCCCCCcCc
Confidence 888888765
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.04 E-value=1.3e-10 Score=87.27 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+++|++|++++|.++ .+|. ...+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.++....+.+++.+++
T Consensus 168 l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 168 SDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp TTTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred cCcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence 455566666666655 2222 223666666666666666 4444566667777777777777655544455666667777
Q ss_pred cCCCCCCC
Q 031242 84 EGNKGLYG 91 (163)
Q Consensus 84 ~~n~~lc~ 91 (163)
++|+..|+
T Consensus 245 ~~N~~~~~ 252 (317)
T 3o53_A 245 RGNGFHCG 252 (317)
T ss_dssp TTCCCBHH
T ss_pred cCCCccCc
Confidence 77766653
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.03 E-value=3e-10 Score=91.41 Aligned_cols=81 Identities=20% Similarity=0.117 Sum_probs=50.3
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (163)
++++.|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|+++..++. .+.+|+.++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 4566666666666654455666666666666666666655566666666666666666666643332 45566666665
Q ss_pred CCC
Q 031242 85 GNK 87 (163)
Q Consensus 85 ~n~ 87 (163)
+|.
T Consensus 130 ~N~ 132 (562)
T 3a79_B 130 FND 132 (562)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=91.76 Aligned_cols=79 Identities=23% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccC
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG 85 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~ 85 (163)
+|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++|++++|+++..++. .+.+|+.+++++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCS
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccC
Confidence 445555555555533334455555555555555555544444455555555555555554432222 344444444444
Q ss_pred C
Q 031242 86 N 86 (163)
Q Consensus 86 n 86 (163)
|
T Consensus 100 N 100 (520)
T 2z7x_B 100 N 100 (520)
T ss_dssp S
T ss_pred C
Confidence 4
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.02 E-value=3e-10 Score=85.95 Aligned_cols=84 Identities=21% Similarity=0.268 Sum_probs=56.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++.+..|.. ..+++++.
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 456777777777777773 3 346677777777777777773 33 4666777777777777776655543 45667777
Q ss_pred ccccCCCCC
Q 031242 81 TSYEGNKGL 89 (163)
Q Consensus 81 l~~~~n~~l 89 (163)
+++++|+..
T Consensus 316 L~L~~n~l~ 324 (347)
T 4fmz_A 316 LFLSQNHIT 324 (347)
T ss_dssp EECCSSSCC
T ss_pred EEccCCccc
Confidence 777777543
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.02 E-value=1.8e-10 Score=83.04 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=47.4
Q ss_pred CCCCCCCeEEccCCC-CCCCCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCC
Q 031242 2 GQFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~ 79 (163)
.++++|+.|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|+.|++++|++++. |....+.+++
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-p~~~~l~~L~ 130 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD 130 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-CCCTTCCBCC
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-cccccccccc
Confidence 345666666666665 5533334566666666666666 666643344556666666666666666653 3344444444
Q ss_pred ---cccccCC
Q 031242 80 ---PTSYEGN 86 (163)
Q Consensus 80 ---~l~~~~n 86 (163)
.+++++|
T Consensus 131 ~L~~L~l~~N 140 (239)
T 2xwt_C 131 IFFILEITDN 140 (239)
T ss_dssp SEEEEEEESC
T ss_pred cccEEECCCC
Confidence 5555555
No 97
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=87.00 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY 83 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~ 83 (163)
++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++++.++. ...+.+|+.+++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 5799999999999965556899999999999999999977788899999999999999999987765 467889999999
Q ss_pred cCCCCC
Q 031242 84 EGNKGL 89 (163)
Q Consensus 84 ~~n~~l 89 (163)
++|...
T Consensus 132 ~~n~l~ 137 (353)
T 2z80_A 132 LGNPYK 137 (353)
T ss_dssp TTCCCS
T ss_pred CCCCCc
Confidence 988543
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1e-10 Score=98.89 Aligned_cols=84 Identities=19% Similarity=0.369 Sum_probs=63.7
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCC-cCchhhcCCC-------CcccccccCccccCcCCC--
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSG-KIPSQLASLN-------FLSVLNLSYNNLVGKIPT-- 71 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g-~~p~~~~~l~-------~L~~L~l~~N~l~~~~p~-- 71 (163)
++++|+.|+|++|.+.+.+|..++++++|+.|++++|+ ++| .+|..++.++ +|+.|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 78889999999999888899888888888888888887 887 6777665554 7777777777777 3443
Q ss_pred -CcccCCCCcccccCCC
Q 031242 72 -STQLQSFSPTSYEGNK 87 (163)
Q Consensus 72 -~~~l~~l~~l~~~~n~ 87 (163)
...+.+|+.+++++|.
T Consensus 568 ~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp HHTTCTTCCEEECTTSC
T ss_pred hhhcCCCCCEEECCCCC
Confidence 4566666666666664
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=5.1e-10 Score=91.79 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=41.5
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPT 81 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l 81 (163)
++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|..+++|++|++++|++.+.+|. ...+.+|+.+
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 344555555555555544455555555555555555555522222355555555555555555544432 2344455555
Q ss_pred cccCC
Q 031242 82 SYEGN 86 (163)
Q Consensus 82 ~~~~n 86 (163)
++++|
T Consensus 127 ~Ls~n 131 (680)
T 1ziw_A 127 DLSHN 131 (680)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55444
No 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=6.7e-10 Score=84.23 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=71.0
Q ss_pred CeEEccCC-CCCCCCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccccc
Q 031242 8 YALNMSHN-ALTGSIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE 84 (163)
Q Consensus 8 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~ 84 (163)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+++..|..|..+++|+.|+|++|+|++.+|.. ..+.+|+.++++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45799998 899 7999 99999999999996 9999777788999999999999999999998865 779999999999
Q ss_pred CCCC
Q 031242 85 GNKG 88 (163)
Q Consensus 85 ~n~~ 88 (163)
+|..
T Consensus 89 ~N~l 92 (347)
T 2ifg_A 89 FNAL 92 (347)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 9864
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.4e-09 Score=91.94 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=70.1
Q ss_pred CCCCCCeEEccCCCCCCCCCcccC--CCcccceeccccccCCCcCchhhcCCCCcccccccC------ccccCcCCCC-c
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFG--NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY------NNLVGKIPTS-T 73 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~-~ 73 (163)
++++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++ |++.+.+|.. .
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 3458999999999999 8888887 89999999999999995 788888999999998876 7777777754 6
Q ss_pred ccCCCCcccccCCCC
Q 031242 74 QLQSFSPTSYEGNKG 88 (163)
Q Consensus 74 ~l~~l~~l~~~~n~~ 88 (163)
.+.+|+.+++++|..
T Consensus 804 ~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI 818 (876)
T ss_dssp GCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 788888898888865
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.96 E-value=1.3e-09 Score=81.11 Aligned_cols=78 Identities=29% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|++++..+ ...+.+|+.+++
T Consensus 111 l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEEC
Confidence 3344444444444432 2 223334444444444444442 1 233444444444444444444333 333444444444
Q ss_pred cCC
Q 031242 84 EGN 86 (163)
Q Consensus 84 ~~n 86 (163)
++|
T Consensus 186 ~~N 188 (291)
T 1h6t_A 186 SKN 188 (291)
T ss_dssp CSS
T ss_pred CCC
Confidence 444
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=82.05 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCCCeEEccCCCCCCCCCccc--CCCcccceeccccccCCCcCc----hhhcCCCCcccccccCccccCcCCCC-cccCC
Q 031242 5 KSLYALNMSHNALTGSIPSSF--GNLKQIESLDLSMNNLSGKIP----SQLASLNFLSVLNLSYNNLVGKIPTS-TQLQS 77 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~ls~N~l~g~~p----~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~ 77 (163)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..| ..+..+++|+.|++++|++.+.++.. ..+.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 346666666666666666555 566666666666666665433 22334556666666666665555432 34555
Q ss_pred CCcccccCCC
Q 031242 78 FSPTSYEGNK 87 (163)
Q Consensus 78 l~~l~~~~n~ 87 (163)
|+.+++++|.
T Consensus 171 L~~L~Ls~N~ 180 (310)
T 4glp_A 171 LTSLDLSDNP 180 (310)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECCCCC
Confidence 5555555554
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=1.7e-09 Score=81.02 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=14.4
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCC
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 42 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 42 (163)
+++|+.|++++|.++ .+| .+..+++|+.|++++|.++
T Consensus 84 l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 84 LTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp CCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCC
Confidence 334444444444444 122 2333344444444444433
No 105
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=1.5e-09 Score=81.28 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=6.4
Q ss_pred CCCCCeEEccCCCCC
Q 031242 4 FKSLYALNMSHNALT 18 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~ 18 (163)
+++|+.|++++|.++
T Consensus 106 l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 106 LQSIKTLDLTSTQIT 120 (308)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 334444444444444
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=5.4e-10 Score=88.85 Aligned_cols=65 Identities=25% Similarity=0.241 Sum_probs=39.0
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhc-CCCCcccccccCccccCc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA-SLNFLSVLNLSYNNLVGK 68 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~~~ 68 (163)
+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 45566666666666655566666666677777777776665555554 445555555555554443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.91 E-value=1.6e-09 Score=80.53 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=26.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~ 66 (163)
+++|+.|++++|++++ ++. +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++
T Consensus 67 l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC
Confidence 4445555555555552 222 4444455555555554442 22 2444444444444444444
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.91 E-value=5.2e-10 Score=80.65 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCCCCCeEEccC-CCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcc---cccccCc-cccCcCCC-CcccC
Q 031242 3 QFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS---VLNLSYN-NLVGKIPT-STQLQ 76 (163)
Q Consensus 3 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~-~~~l~ 76 (163)
++++|+.|++++ |.+++..+..|.++++|++|++++|.++ .+|. +..+++|+ .+++++| .+.+.++. ...+.
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 466777777776 7777444456667777777777777776 3555 55666665 6666666 66655544 24455
Q ss_pred CCC-cccccCCC
Q 031242 77 SFS-PTSYEGNK 87 (163)
Q Consensus 77 ~l~-~l~~~~n~ 87 (163)
+++ .+++++|.
T Consensus 156 ~L~~~L~l~~n~ 167 (239)
T 2xwt_C 156 NETLTLKLYNNG 167 (239)
T ss_dssp SSEEEEECCSCC
T ss_pred cceeEEEcCCCC
Confidence 666 66665553
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=1.7e-09 Score=79.32 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=21.2
Q ss_pred hcCCCCcccccccCccccCcCCCCcccCCCCcccccCCC
Q 031242 49 LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNK 87 (163)
Q Consensus 49 ~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~ 87 (163)
+..+++|+.|++++|++++. +....+.+|+.+++++|.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSC
T ss_pred hcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCc
Confidence 45555666666666665544 234455556666665554
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=1.3e-09 Score=88.89 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=34.7
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+++|+.|+|++|.+++ + +.+..+++|+.|++++|.+++..| +..+++|+.|++++|++++. |....+.+|+.+++
T Consensus 130 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 130 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204 (605)
T ss_dssp CTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEC
T ss_pred CCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEc
Confidence 3344444444444442 1 234444444444444444443222 44444555555555554443 23344445555555
Q ss_pred cCC
Q 031242 84 EGN 86 (163)
Q Consensus 84 ~~n 86 (163)
.+|
T Consensus 205 ~~N 207 (605)
T 1m9s_A 205 FSQ 207 (605)
T ss_dssp CSE
T ss_pred cCC
Confidence 544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.89 E-value=3.1e-09 Score=86.71 Aligned_cols=81 Identities=28% Similarity=0.421 Sum_probs=57.5
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
..+++|+.|+|++|.+++ + +.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.+.+| ...+.+|+.+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 180 (605)
T ss_dssp TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE
Confidence 456667777777777763 3 346677777777777777774 3 456777888888888888887766 6677788888
Q ss_pred cccCCC
Q 031242 82 SYEGNK 87 (163)
Q Consensus 82 ~~~~n~ 87 (163)
++++|.
T Consensus 181 ~Ls~N~ 186 (605)
T 1m9s_A 181 YLSKNH 186 (605)
T ss_dssp ECCSSC
T ss_pred ECcCCC
Confidence 887774
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.89 E-value=3.4e-09 Score=77.78 Aligned_cols=78 Identities=28% Similarity=0.409 Sum_probs=37.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+++|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|... . ++|+.|++++|++++. +....+.+|+.+++
T Consensus 62 l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 62 FTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRDT-DSLIHLKNLEILSI 135 (263)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSBS-GGGTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccCCC-hhhcCcccccEEEC
Confidence 444555555555555 2333 445555555555555554 233221 1 4555555555555543 23445556666666
Q ss_pred cCCC
Q 031242 84 EGNK 87 (163)
Q Consensus 84 ~~n~ 87 (163)
++|.
T Consensus 136 s~N~ 139 (263)
T 1xeu_A 136 RNNK 139 (263)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 6653
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.84 E-value=6.8e-09 Score=78.47 Aligned_cols=82 Identities=24% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l 81 (163)
..+++|++|++++|.++ .+|. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+..+ ...+.+++.+
T Consensus 63 ~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 34677788888888777 4555 777788888888888777 344 47777888888888887776544 5566677777
Q ss_pred cccCCCC
Q 031242 82 SYEGNKG 88 (163)
Q Consensus 82 ~~~~n~~ 88 (163)
++++|..
T Consensus 138 ~l~~n~~ 144 (347)
T 4fmz_A 138 NLGANHN 144 (347)
T ss_dssp ECTTCTT
T ss_pred ECCCCCC
Confidence 7776643
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.83 E-value=2.3e-09 Score=80.55 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhc-CCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.. ....+.+++.++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEE
Confidence 45677777777777755555677777777777777777755555543 5667777777777766553 223355666666
Q ss_pred ccCCC
Q 031242 83 YEGNK 87 (163)
Q Consensus 83 ~~~n~ 87 (163)
+++|.
T Consensus 198 Ls~N~ 202 (317)
T 3o53_A 198 LSSNK 202 (317)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 66654
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.80 E-value=2.2e-11 Score=85.63 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=52.8
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
.+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++. |....+.+++.++
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccCCCCCEEE
Confidence 35667777777777773 55 6666777777777777777 5666666666777777777776653 2344555666666
Q ss_pred ccCCC
Q 031242 83 YEGNK 87 (163)
Q Consensus 83 ~~~n~ 87 (163)
+++|.
T Consensus 122 l~~N~ 126 (198)
T 1ds9_A 122 MSNNK 126 (198)
T ss_dssp ESEEE
T ss_pred CCCCc
Confidence 66553
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.79 E-value=3.8e-09 Score=83.19 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=44.5
Q ss_pred CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (163)
+++|+.|++++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+| ...+..++.+++
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 382 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL 382 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence 4445555555555553322 44555555555555555532 245556666666666666666555 455566666666
Q ss_pred cCCCCC
Q 031242 84 EGNKGL 89 (163)
Q Consensus 84 ~~n~~l 89 (163)
.+|++.
T Consensus 383 ~~n~~~ 388 (466)
T 1o6v_A 383 NDQAWT 388 (466)
T ss_dssp CCEEEE
T ss_pred cCCccc
Confidence 666543
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.77 E-value=5.8e-09 Score=82.16 Aligned_cols=80 Identities=26% Similarity=0.372 Sum_probs=57.3
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~ 82 (163)
.+++|++|++++|.++ .+|+ +.++++|++|++++|.+++ ++. +..+++|++|++++|.+.+.++ ...+.+|+.++
T Consensus 66 ~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hhcCCCEEECCCCccC-Cchh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence 4677888888888887 4444 7778888888888888874 343 7778888888888887776554 55666777776
Q ss_pred ccCCC
Q 031242 83 YEGNK 87 (163)
Q Consensus 83 ~~~n~ 87 (163)
+++|.
T Consensus 141 l~~n~ 145 (466)
T 1o6v_A 141 LSSNT 145 (466)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 66653
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.77 E-value=2.7e-11 Score=85.20 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=72.1
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP 80 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~ 80 (163)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+ ....+.+++.
T Consensus 68 ~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 4678999999999999 788888888999999999999994 56 68889999999999999987543 3467888999
Q ss_pred ccccCCCCCC
Q 031242 81 TSYEGNKGLY 90 (163)
Q Consensus 81 l~~~~n~~lc 90 (163)
+++.+|+..+
T Consensus 145 L~l~~N~l~~ 154 (198)
T 1ds9_A 145 LLLAGNPLYN 154 (198)
T ss_dssp EEECSCHHHH
T ss_pred EEecCCcccc
Confidence 9999987544
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.75 E-value=1.4e-08 Score=80.05 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=6.3
Q ss_pred CCCCcccccccCcccc
Q 031242 51 SLNFLSVLNLSYNNLV 66 (163)
Q Consensus 51 ~l~~L~~L~l~~N~l~ 66 (163)
.+++|++|++++|+++
T Consensus 104 ~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLT 119 (457)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred CCCcCCEEECCCCcCC
Confidence 3333344444443333
No 120
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=6.7e-09 Score=76.55 Aligned_cols=66 Identities=27% Similarity=0.338 Sum_probs=47.1
Q ss_pred CCCCCCeEEccCCCCCC--CCCcccCCCcccceeccccccCCCcCchhhcCCC--CcccccccCccccCcCC
Q 031242 3 QFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLN--FLSVLNLSYNNLVGKIP 70 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~--~L~~L~l~~N~l~~~~p 70 (163)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|++++|.+.+..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 36778888888888885 3445566788888888888888753 2333343 78888888888877655
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.71 E-value=3.5e-08 Score=77.80 Aligned_cols=63 Identities=30% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP 70 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p 70 (163)
+.+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++.++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 4556666677777766643 25666666666776666664 45 5566666666666666665543
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.68 E-value=2.1e-08 Score=81.31 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCc-------ccccccCccccCcCCCCcccCC
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFL-------SVLNLSYNNLVGKIPTSTQLQS 77 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L-------~~L~l~~N~l~~~~p~~~~l~~ 77 (163)
++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|+++.+++....+.+
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDP 231 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCC
Confidence 455666666666653 555 43 56666666666666 5555 433 55 6677777777655444555666
Q ss_pred CCcccccCCCCCC
Q 031242 78 FSPTSYEGNKGLY 90 (163)
Q Consensus 78 l~~l~~~~n~~lc 90 (163)
+..+++++|+..+
T Consensus 232 L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 232 TCTIILEDNPLSS 244 (571)
T ss_dssp TEEEECCSSSCCH
T ss_pred CCEEEeeCCcCCC
Confidence 7777777776533
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.66 E-value=4.9e-08 Score=79.11 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=25.8
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
++|+.|++++|.+++ +|. +.+ +|+.|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 445555555555553 444 332 44555555555442 333 34444444444444444
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.63 E-value=5.9e-08 Score=79.37 Aligned_cols=77 Identities=29% Similarity=0.241 Sum_probs=54.9
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (163)
++|+.|++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++..++....+.+|..+++.
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 55677777777777 355 34567777777777777 5665 5677888888888888555455677888888888
Q ss_pred CCCCC
Q 031242 85 GNKGL 89 (163)
Q Consensus 85 ~n~~l 89 (163)
+|+..
T Consensus 293 ~N~l~ 297 (622)
T 3g06_A 293 GNPLS 297 (622)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88654
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.60 E-value=2.3e-09 Score=80.67 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCCCeEEccCCCCCCC-CCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242 5 KSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
++|+.|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 3344444444443322 3333334444444444444433333333333444444444443
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.58 E-value=2e-09 Score=82.76 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=63.2
Q ss_pred CCCCCCeEEccCCCCC----CCCCcccCCCcccceeccccccCCCc----Cchhh--cCCCCcccccccCccccC----c
Q 031242 3 QFKSLYALNMSHNALT----GSIPSSFGNLKQIESLDLSMNNLSGK----IPSQL--ASLNFLSVLNLSYNNLVG----K 68 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~--~~l~~L~~L~l~~N~l~~----~ 68 (163)
.+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. +|..+ +.+++|+.|++++|.+++ .
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 5677888888888874 46777777888888888888888754 45555 337888888888888876 2
Q ss_pred CCC-C-cccCCCCcccccCCCCCC
Q 031242 69 IPT-S-TQLQSFSPTSYEGNKGLY 90 (163)
Q Consensus 69 ~p~-~-~~l~~l~~l~~~~n~~lc 90 (163)
+|. . ..+++|+.+++.+|+...
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHhcCCCceEEEccCCcCCc
Confidence 333 2 346788888888886543
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.55 E-value=1.3e-07 Score=74.61 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=41.8
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (163)
++|++|++++|.+++ +| .++++++|++|++++|++++ +|..+ .+|++|++++|++++. |....+..++.++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-PELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-CCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-ccccCCCCCCEEECC
Confidence 356666666666663 55 36666666666666666663 44322 3555555666555552 344445555555555
Q ss_pred CC
Q 031242 85 GN 86 (163)
Q Consensus 85 ~n 86 (163)
+|
T Consensus 204 ~N 205 (454)
T 1jl5_A 204 NN 205 (454)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.55 E-value=6.1e-08 Score=73.71 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCch-hhcCCCCccc-ccccCccccCcCCCC-cccCCCCc
Q 031242 5 KSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPS-QLASLNFLSV-LNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~-L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+++++|+|++|+++ .+| ..|.++++|++|++++|++.+.+|. .|.++++++. +.+..|++...+|.. ..+.+|+.
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46788888888888 555 4678888888888888887655554 4666776654 455567777766654 55677777
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+++.+|.
T Consensus 109 L~l~~n~ 115 (350)
T 4ay9_X 109 LLISNTG 115 (350)
T ss_dssp EEEEEEC
T ss_pred ccccccc
Confidence 7776664
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.53 E-value=7.6e-08 Score=73.15 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=59.2
Q ss_pred CCCCCCCCeEEccCCCCCCCCC-cccCCCcccce-eccccccCCCcCchhhcCCCCcccccccCccccCcCCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIP-SSFGNLKQIES-LDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT 71 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 71 (163)
|.++++|++|+|++|++.+.+| ..|.++++++. +.++.|+++...|..|..+++|+.+++++|++.+.++.
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence 4678999999999999876666 45788988775 56678999966678899999999999999999876653
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.51 E-value=1.3e-08 Score=77.69 Aligned_cols=64 Identities=33% Similarity=0.325 Sum_probs=34.2
Q ss_pred CCCeEEccCCCCCCCCC----cccCCCc-ccceeccccccCCCcCchhhcCC-----CCcccccccCccccCcC
Q 031242 6 SLYALNMSHNALTGSIP----SSFGNLK-QIESLDLSMNNLSGKIPSQLASL-----NFLSVLNLSYNNLVGKI 69 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~l-----~~L~~L~l~~N~l~~~~ 69 (163)
+|+.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|+.|++++|++++..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 35666666666553333 4444555 56666666665554444444443 55555555555555443
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.48 E-value=3.5e-07 Score=72.03 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=39.1
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
++++++|++|++++|+++ .+|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 356677777777777777 355433 366677777777763 55 45666666666666666654
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.41 E-value=2.6e-08 Score=76.55 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCCCCCCeEEccCC---CCCCCCCccc-------CCCcccceeccccccCCC----cCchhhcCCCCcccccccCccccC
Q 031242 2 GQFKSLYALNMSHN---ALTGSIPSSF-------GNLKQIESLDLSMNNLSG----KIPSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~ls~N~l~g----~~p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
..+++|+.|++++| ++++.+|..+ ..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+..
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 45677778887775 3444455544 567788888888888775 366677777888888888887753
Q ss_pred cCCCC-----ccc---------CCCCcccccCCC
Q 031242 68 KIPTS-----TQL---------QSFSPTSYEGNK 87 (163)
Q Consensus 68 ~~p~~-----~~l---------~~l~~l~~~~n~ 87 (163)
..+.. ..+ +.|+.+++++|.
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 32211 112 566777776664
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.40 E-value=1.4e-08 Score=77.49 Aligned_cols=85 Identities=27% Similarity=0.345 Sum_probs=54.1
Q ss_pred CCC-CCCeEEccCCCCCCCCCcccCCC-----cccceeccccccCCCcCchhhcC----C-CCcccccccCccccCcCCC
Q 031242 3 QFK-SLYALNMSHNALTGSIPSSFGNL-----KQIESLDLSMNNLSGKIPSQLAS----L-NFLSVLNLSYNNLVGKIPT 71 (163)
Q Consensus 3 ~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~~----l-~~L~~L~l~~N~l~~~~p~ 71 (163)
+++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.. + ++|+.|++++|++++..+.
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 127 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence 345 67788888887776556555554 77778888888777655554333 3 6777777777777655442
Q ss_pred C-----cc-cCCCCcccccCCC
Q 031242 72 S-----TQ-LQSFSPTSYEGNK 87 (163)
Q Consensus 72 ~-----~~-l~~l~~l~~~~n~ 87 (163)
. .. ..+++.+++++|.
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCceeEEEccCCc
Confidence 2 11 2466666666653
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.40 E-value=6.3e-08 Score=72.74 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCc-CchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242 5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS 82 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~ 82 (163)
+.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+. ...+++|+.++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6789999999999966555 66899999999999999865 888899999999999999998865543 35678889999
Q ss_pred ccCCCCC
Q 031242 83 YEGNKGL 89 (163)
Q Consensus 83 ~~~n~~l 89 (163)
+.+|..+
T Consensus 149 L~~~~~l 155 (336)
T 2ast_B 149 LSGCSGF 155 (336)
T ss_dssp CTTCBSC
T ss_pred CCCCCCC
Confidence 8888533
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.39 E-value=5.1e-07 Score=73.86 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
+|+.|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|+.|++++|.+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence 3444555555444 3333 2344444444444444 3333 33444444444444443
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=8.9e-07 Score=65.17 Aligned_cols=64 Identities=28% Similarity=0.351 Sum_probs=51.5
Q ss_pred CCCcccceeccccccCCC--cCchhhcCCCCcccccccCccccCcCCCCcccC--CCCcccccCCCCCCC
Q 031242 26 GNLKQIESLDLSMNNLSG--KIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQ--SFSPTSYEGNKGLYG 91 (163)
Q Consensus 26 ~~l~~L~~L~ls~N~l~g--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~--~l~~l~~~~n~~lc~ 91 (163)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. .....+. .|+.+.+.+|+ +|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Ccc
Confidence 457899999999999997 4567778899999999999999976 2233344 88899999998 453
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.09 E-value=1.2e-07 Score=74.10 Aligned_cols=63 Identities=29% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccC-----CCcccceeccccccCCCc----CchhhcCCCCcccccccCcccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~ 66 (163)
+++|+.|++++|.++...+..+. ..++|+.|++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 44555555555555422111111 113445555555544432 2333334444445555444444
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.91 E-value=7e-07 Score=69.71 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcC-----chhhcCCCCcccccccCccccC
Q 031242 5 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKI-----PSQLASLNFLSVLNLSYNNLVG 67 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~-----p~~~~~l~~L~~L~l~~N~l~~ 67 (163)
++|+.|++++|.+++. ++..+..+++|++|++++|.++... +..+..+++|+.|++++|.++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 3555555555555532 3444445555555555555554221 1111234555555555555543
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.83 E-value=6.8e-07 Score=68.76 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=49.7
Q ss_pred CCCCCeEEccCCCCCC----CCCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCcCCC----
Q 031242 4 FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGKIPT---- 71 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~~p~---- 71 (163)
.++|+.|+|++|.++. .++..+...++|++|++++|.++.. ++..+...++|+.|++++|.++.....
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4567777777777652 1333445566777777777776532 234455566777777777776532211
Q ss_pred -CcccCCCCcccccCCC
Q 031242 72 -STQLQSFSPTSYEGNK 87 (163)
Q Consensus 72 -~~~l~~l~~l~~~~n~ 87 (163)
....++|+.+++++|+
T Consensus 234 ~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 234 AAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHCSSCCEEECTTSS
T ss_pred HHHhCCCCCEEeccCCC
Confidence 1234567777777764
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=1.8e-05 Score=59.37 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCchhhcCCCCcc-cccccCccccCcCCCC-cccCCCCc
Q 031242 4 FKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS-VLNLSYNNLVGKIPTS-TQLQSFSP 80 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~-~~l~~l~~ 80 (163)
+++|+.+++++|+++ .+| ..|.++.+|+.+++++| ++..-+..|..+.+|+ .+++++ .++...+.. ..+.+|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 689999999999999 555 56999999999999998 7744556799999999 999988 666555443 56778888
Q ss_pred ccccCCC
Q 031242 81 TSYEGNK 87 (163)
Q Consensus 81 l~~~~n~ 87 (163)
+.+.+|.
T Consensus 302 l~l~~n~ 308 (329)
T 3sb4_A 302 VLATGDK 308 (329)
T ss_dssp EEECSSC
T ss_pred EEeCCCc
Confidence 8776653
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=3.8e-05 Score=57.61 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=62.7
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccc-eeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCC
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIE-SLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSF 78 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l 78 (163)
|.++.+|+.+++++| ++..-+.+|.++.+|+ .+++++ .++..-+..|..+++|+.+++++|.+....+.. ..+.+|
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 457889999999998 7744456799999999 999998 777455678999999999999999998776643 445555
Q ss_pred Ccc
Q 031242 79 SPT 81 (163)
Q Consensus 79 ~~l 81 (163)
+.+
T Consensus 324 ~~l 326 (329)
T 3sb4_A 324 KLI 326 (329)
T ss_dssp CEE
T ss_pred hhh
Confidence 544
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.63 E-value=2.8e-06 Score=68.28 Aligned_cols=83 Identities=7% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCC----cCchhhcCCCCcccccccCccccCcCCCCcc
Q 031242 3 QFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSG----KIPSQLASLNFLSVLNLSYNNLVGKIPTSTQ 74 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 74 (163)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+.+.....
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 467888888888887654 33344567888888888888873 3344456778888888888887764433345
Q ss_pred cCCCCcccccC
Q 031242 75 LQSFSPTSYEG 85 (163)
Q Consensus 75 l~~l~~l~~~~ 85 (163)
+.+++.+.+..
T Consensus 242 ~~~L~~L~l~~ 252 (592)
T 3ogk_B 242 AANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEEECB
T ss_pred hhHHHhhcccc
Confidence 56666666643
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=0.00012 Score=47.87 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=39.5
Q ss_pred CeEEccCCCCC-CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc
Q 031242 8 YALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV 66 (163)
Q Consensus 8 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~ 66 (163)
..++.+++.++ ..+|..+ ..+|+.|+|++|+|+..-+..|..+++|+.|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888876 3566543 246788888888888433445677888888888887664
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.57 E-value=8.2e-05 Score=48.69 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=47.0
Q ss_pred ceeccccccCC-CcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccCCCCCCC
Q 031242 32 ESLDLSMNNLS-GKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG 91 (163)
Q Consensus 32 ~~L~ls~N~l~-g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~n~~lc~ 91 (163)
..++.+++.++ ..+|..+ -.+|+.|+|++|+|+.+++.. ..+..|+.+.+.+||+.|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 46788888886 3677653 247999999999999887765 5678899999999999996
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=3.5e-06 Score=58.48 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCCCCCCeEEccCC-CCCCC----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCcC---
Q 031242 2 GQFKSLYALNMSHN-ALTGS----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGKI--- 69 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~~--- 69 (163)
...+.|++|+|++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 35678999999999 88632 345566778899999999998732 2333555678999999999887421
Q ss_pred --CCCcccCCCCcccc--cCCC
Q 031242 70 --PTSTQLQSFSPTSY--EGNK 87 (163)
Q Consensus 70 --p~~~~l~~l~~l~~--~~n~ 87 (163)
.......+++.+++ .+|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCceEEEecCCCCC
Confidence 12244567888888 6564
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.52 E-value=1.1e-05 Score=64.86 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=26.7
Q ss_pred CcccceeccccccCCC-cCchhhcCCCCcccccccCccccCc-CCCC-cccCCCCcccccCCC
Q 031242 28 LKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYNNLVGK-IPTS-TQLQSFSPTSYEGNK 87 (163)
Q Consensus 28 l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~-~~l~~l~~l~~~~n~ 87 (163)
+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++.. ..+++|+.+++++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 4455555555555543 1233334455555555555554322 1111 234445555555443
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=8.9e-06 Score=56.37 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=40.2
Q ss_pred CCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccc--cCccccC
Q 031242 3 QFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNL--SYNNLVG 67 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l--~~N~l~~ 67 (163)
..++|++|+|++|.++.. +...+...++|++|++++|.+... +...+...++|+.|++ ++|.+..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 345677777777777631 233344456677777777777632 2344555667777777 6677653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.52 E-value=6.9e-06 Score=63.11 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=52.3
Q ss_pred CCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCc
Q 031242 3 QFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGK 68 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~ 68 (163)
..++|++|+|++|.++.. ++..+...++|+.|++++|.++.. +...+...++|+.|++++|.++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 467899999999999742 355667788999999999999843 334455678999999999998743
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.44 E-value=4.4e-06 Score=67.16 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=36.0
Q ss_pred CcccceeccccccCCCcCchhh-cCCCCcccccccCccccCcCCC--CcccCCCCcccccCCCC
Q 031242 28 LKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNLVGKIPT--STQLQSFSPTSYEGNKG 88 (163)
Q Consensus 28 l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L~l~~N~l~~~~p~--~~~l~~l~~l~~~~n~~ 88 (163)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ...+++|+.+++.+|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5666777777776654433333 4567777777777776433221 13456677777766643
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.22 E-value=2.7e-05 Score=62.50 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCCCCeEEccCCCCCCCCCcccC-CCcccceeccccc-cCCCc-CchhhcCCCCcccccccCccccCcCCCC-----ccc
Q 031242 4 FKSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMN-NLSGK-IPSQLASLNFLSVLNLSYNNLVGKIPTS-----TQL 75 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ls~N-~l~g~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~l 75 (163)
+++|+.|++++|.+++..+..+. .+++|+.|++++| .++.. ++.....+++|++|++++|.+++..+.. ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45677777777766654444443 4667777777666 33321 3333445667777777777655432211 134
Q ss_pred CCCCcccccCC
Q 031242 76 QSFSPTSYEGN 86 (163)
Q Consensus 76 ~~l~~l~~~~n 86 (163)
.+|+.+++.+|
T Consensus 184 ~~L~~L~l~~~ 194 (594)
T 2p1m_B 184 TSLVSLNISCL 194 (594)
T ss_dssp CCCCEEECTTC
T ss_pred CcCcEEEeccc
Confidence 45555555544
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.12 E-value=4.5e-05 Score=52.58 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=55.4
Q ss_pred CCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCCcCchhhcCC----CCcccccccCcc-ccCc-CCCCcccCCC
Q 031242 6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSGKIPSQLASL----NFLSVLNLSYNN-LVGK-IPTSTQLQSF 78 (163)
Q Consensus 6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l----~~L~~L~l~~N~-l~~~-~p~~~~l~~l 78 (163)
+|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+ ++|+.|+++++. ++.. +.....+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47888999888774333456788889999998874 553333345554 368889988874 5532 1122456777
Q ss_pred CcccccCCCCCC
Q 031242 79 SPTSYEGNKGLY 90 (163)
Q Consensus 79 ~~l~~~~n~~lc 90 (163)
+.+++.+.+.+.
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888777665443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.98 E-value=4.6e-05 Score=58.38 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=56.6
Q ss_pred CCCCCCeEEccC--CCCCCC-----CCccc--CCCcccceeccccccCCCcCchhhc---CCCCcccccccCccccCcC-
Q 031242 3 QFKSLYALNMSH--NALTGS-----IPSSF--GNLKQIESLDLSMNNLSGKIPSQLA---SLNFLSVLNLSYNNLVGKI- 69 (163)
Q Consensus 3 ~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~g~~p~~~~---~l~~L~~L~l~~N~l~~~~- 69 (163)
.+++|+.|+|+. |...+. +...+ ..+++|+.|++++|.+....+..+. .+++|+.|+++.|.+.+..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 578999999863 222211 11222 2578999999999988744433333 4789999999999987632
Q ss_pred ---CCC-cccCCCCcccccCCC
Q 031242 70 ---PTS-TQLQSFSPTSYEGNK 87 (163)
Q Consensus 70 ---p~~-~~l~~l~~l~~~~n~ 87 (163)
+.. ..+++|+.++++.|.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 222 456788888887774
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.75 E-value=0.0026 Score=49.22 Aligned_cols=59 Identities=7% Similarity=0.038 Sum_probs=26.1
Q ss_pred CCCCCCeEEccCCCCC-----CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccC
Q 031242 3 QFKSLYALNMSHNALT-----GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~ 62 (163)
++++|+.+++++|.+. ..-+..|.++++|+.+++.+ .++..-...|..+.+|+.+++..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 3445555555544432 11223444555555555552 24322233444555555555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.34 E-value=0.00055 Score=52.36 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCCCCeEEccCCCCCCCCCcccC--CCcccceecccc--ccCCCc-----Cchhh--cCCCCcccccccCccccCcCCC-
Q 031242 4 FKSLYALNMSHNALTGSIPSSFG--NLKQIESLDLSM--NNLSGK-----IPSQL--ASLNFLSVLNLSYNNLVGKIPT- 71 (163)
Q Consensus 4 l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~--N~l~g~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p~- 71 (163)
+++|+.|++..+.++...-..+. .+++|+.|+|+. |...+. +...+ ..+++|+.|++.+|.+....+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56888888888777633223332 678888888753 222111 11112 2468888999988877642211
Q ss_pred ---CcccCCCCcccccCCC
Q 031242 72 ---STQLQSFSPTSYEGNK 87 (163)
Q Consensus 72 ---~~~l~~l~~l~~~~n~ 87 (163)
...++.|+.++++.|.
T Consensus 272 la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHCSSGGGCSEEECCSSC
T ss_pred HHhCccCCCCCEEECCCCC
Confidence 1246677778776653
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.16 E-value=0.0082 Score=46.41 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242 2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
.++.+|+.++++.|.++ .+|.......+|+.+.+.++ ++..-...|..+++|+.+++..|
T Consensus 177 ~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred hCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 45677777777777766 44443333466666666533 44233345666666776666553
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.05 E-value=0.00066 Score=46.71 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=46.5
Q ss_pred CCCCCCCeEEccCCC-CCCCCCcccCCC----cccceecccccc-CCCcCchhhcCCCCcccccccCcc
Q 031242 2 GQFKSLYALNMSHNA-LTGSIPSSFGNL----KQIESLDLSMNN-LSGKIPSQLASLNFLSVLNLSYNN 64 (163)
Q Consensus 2 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~l~~N~ 64 (163)
..+++|+.|+|+++. ++..--..+..+ ++|++|+++++. ++..--..+..+++|+.|+++++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 578999999999985 663222334444 479999999974 764333457789999999999874
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.19 E-value=0.07 Score=40.72 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242 3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
.+.+|+.+.+..+ ++..-..+|.++.+|+.+++.++ ++..-...|..+.+|+.+++..|
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3455555555433 33122244556666666666543 44222345666666666666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.03 E-value=0.12 Score=38.99 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=19.7
Q ss_pred ccCCCcccceeccccccCCCcCchhhcCCCCcccccccC
Q 031242 24 SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62 (163)
Q Consensus 24 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~ 62 (163)
.|.++.+|+.+.+.++.++..-...|.++.+|+.+++..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 344555555555555555422233455555555555543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.91 E-value=0.1 Score=39.79 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=27.7
Q ss_pred ccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccccCC
Q 031242 24 SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSYEGN 86 (163)
Q Consensus 24 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~~~n 86 (163)
.|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..... ...+.+|+.+.+.++
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 4555555555555543 33122334555556665555433 2222111 134445555555444
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.85 E-value=0.078 Score=40.08 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=47.9
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
|.++.+|+.+.+.++.++..-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+++..+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 346788999999998888334467899999999999865 55233457888999999887654
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.61 E-value=0.077 Score=40.48 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 65 (163)
|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-...|.++++|+.+++.++..
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 346788999998765 55233467889999999999765 6633356799999999999988754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.02 E-value=0.015 Score=40.63 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=54.6
Q ss_pred CCCCCeEEccCC-CCCC----CCCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCcCCC---
Q 031242 4 FKSLYALNMSHN-ALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGKIPT--- 71 (163)
Q Consensus 4 l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~~p~--- 71 (163)
=+.|+.|+|++| .+.. .+-+.+..-+.|+.|+|++|.+... +-..+..-+.|+.|+|++|.|....-.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 357899999985 6652 1334566668899999999998632 122244457899999999998732211
Q ss_pred --CcccCCCCcccccCC
Q 031242 72 --STQLQSFSPTSYEGN 86 (163)
Q Consensus 72 --~~~l~~l~~l~~~~n 86 (163)
...-..|+.+.+++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 123445677777543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.01 E-value=0.082 Score=40.32 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=47.0
Q ss_pred CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242 1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63 (163)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N 63 (163)
|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..| ++..-...|..+.+|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 356789999999754 66233467899999999999877 66344567889999999988754
No 164
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=91.49 E-value=0.053 Score=27.29 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=12.4
Q ss_pred eeeeehhhhHHhHHHHHHHHHhh
Q 031242 120 FFIAMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
.+.+++++.+++++++..+.+|+
T Consensus 12 aIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHHHHHH
Confidence 44556666666555555444433
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.01 E-value=0.039 Score=38.53 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=43.1
Q ss_pred CCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcC----chhhcCCCCcccccccCcc
Q 031242 5 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKI----PSQLASLNFLSVLNLSYNN 64 (163)
Q Consensus 5 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~----p~~~~~l~~L~~L~l~~N~ 64 (163)
+.|+.|+|++|.+... +.+.+..=+.|++|+|++|.|...- -+.+..-+.|+.|++++|.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 5799999999999732 3334445578999999999997421 1224445679999998753
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=90.82 E-value=0.083 Score=27.41 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=12.0
Q ss_pred eeeehhhhHHhHHHHHHHHHhhhhH
Q 031242 121 FIAMSIGFAVGFGAVVSPLMFSVQV 145 (163)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (163)
+++.++|+++.+.+.++.++|.||+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 4555566444444444444454444
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=87.14 E-value=0.35 Score=25.05 Aligned_cols=9 Identities=11% Similarity=-0.023 Sum_probs=3.4
Q ss_pred eehhhhHHh
Q 031242 123 AMSIGFAVG 131 (163)
Q Consensus 123 ~~~~~~~~~ 131 (163)
+.+++.+++
T Consensus 15 ~gVVgGv~~ 23 (44)
T 2ks1_B 15 TGMVGALLL 23 (44)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 333443333
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=83.16 E-value=1.2 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=12.3
Q ss_pred ehhhhHHhHHHHHHHHHhhhhHH
Q 031242 124 MSIGFAVGFGAVVSPLMFSVQVN 146 (163)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (163)
+++|.++++.++-..++++|.+|
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34555555555555566665543
No 169
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=82.93 E-value=0.44 Score=24.65 Aligned_cols=9 Identities=33% Similarity=-0.082 Sum_probs=3.4
Q ss_pred eehhhhHHh
Q 031242 123 AMSIGFAVG 131 (163)
Q Consensus 123 ~~~~~~~~~ 131 (163)
+.+++.+++
T Consensus 14 ~gVVgGv~~ 22 (44)
T 2l2t_A 14 AGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHH
T ss_pred EeehHHHHH
Confidence 333443333
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=74.35 E-value=0.23 Score=24.33 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=2.7
Q ss_pred HHHhhhh
Q 031242 138 PLMFSVQ 144 (163)
Q Consensus 138 ~~~~~~~ 144 (163)
..++.||
T Consensus 27 ~~~~iRR 33 (35)
T 1iij_A 27 VGILIKR 33 (35)
T ss_dssp TTHHHHH
T ss_pred hheEEee
Confidence 3344433
No 171
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=48.38 E-value=6.1 Score=18.92 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=8.8
Q ss_pred eeehhhhHHhHHHHHHHHHh
Q 031242 122 IAMSIGFAVGFGAVVSPLMF 141 (163)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~ 141 (163)
.+++++.+++.+++...++|
T Consensus 10 aGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EeEeHHHHHHHHHHHHHHhh
Confidence 34445554444433333333
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.74 E-value=42 Score=20.07 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=24.8
Q ss_pred CCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccC
Q 031242 16 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62 (163)
Q Consensus 16 ~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~ 62 (163)
.++..-...|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344233345666777777766654 2213334566666666665543
No 173
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=40.45 E-value=9.1 Score=16.68 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHhHh
Q 031242 143 VQVNKWYNDLIYKFI 157 (163)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (163)
.-||.||...+++..
T Consensus 9 aiwrawyiqyve~~~ 23 (26)
T 4gnt_B 9 AIWRAWYIQYVQRXX 23 (26)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 357888888776643
No 174
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=35.76 E-value=20 Score=20.07 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=10.2
Q ss_pred ehhhhHHhHHHHHHHHHh
Q 031242 124 MSIGFAVGFGAVVSPLMF 141 (163)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~ 141 (163)
+++|.++++.+.+++.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 566666665555555444
No 175
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=36.67 E-value=11 Score=19.20 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 031242 133 GAVVSPLM 140 (163)
Q Consensus 133 ~~~~~~~~ 140 (163)
++++.+++
T Consensus 32 vIVvsl~m 39 (43)
T 2llm_A 32 VIVITLVM 39 (43)
Confidence 33333333
No 176
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=30.15 E-value=16 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=10.1
Q ss_pred eeeehhhhHHhHHHHHHHHHhhh
Q 031242 121 FIAMSIGFAVGFGAVVSPLMFSV 143 (163)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
+++..++.++++.++++.+++.+
T Consensus 32 ~igL~v~~vai~~viVv~l~v~r 54 (122)
T 2lp1_A 32 IIGLMVGGVVIATVIVITLVMLK 54 (122)
Confidence 34444444444444444444443
No 177
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=23.52 E-value=1.1e+02 Score=17.38 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.6
Q ss_pred hHHHHHHHHH
Q 031242 144 QVNKWYNDLI 153 (163)
Q Consensus 144 ~~~~~~~~~~ 153 (163)
.++.+|-.|.
T Consensus 42 pRK~aYadFY 51 (73)
T 1v54_I 42 KRKKAYADFY 51 (73)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444554443
No 178
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=22.98 E-value=43 Score=16.55 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=9.3
Q ss_pred eehhhhHHhHHHHHHHHHhh
Q 031242 123 AMSIGFAVGFGAVVSPLMFS 142 (163)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~ 142 (163)
.++.++.+++...+.+..++
T Consensus 14 lII~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444444
No 179
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=20.90 E-value=67 Score=13.88 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHhH
Q 031242 144 QVNKWYNDLIYKF 156 (163)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (163)
+.|+.|.+.+.|+
T Consensus 5 rfrkkfkklfkkl 17 (27)
T 2ket_A 5 RFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4445556555554
Done!