Query 031243
Match_columns 163
No_of_seqs 131 out of 904
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 1.9E-37 6.4E-42 229.2 9.5 137 2-141 8-147 (174)
2 3swr_A DNA (cytosine-5)-methyl 100.0 6.2E-29 2.1E-33 222.0 13.9 129 3-136 141-281 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 4.4E-27 1.5E-31 214.4 14.6 128 3-135 452-592 (1330)
4 4dov_A ORC1, origin recognitio 99.9 9.4E-25 3.2E-29 156.7 15.8 125 8-135 21-159 (163)
5 4ft4_B DNA (cytosine-5)-methyl 99.9 5.6E-23 1.9E-27 181.1 10.2 126 6-135 43-179 (784)
6 3swr_A DNA (cytosine-5)-methyl 99.9 2.9E-22 9.9E-27 179.2 13.6 128 5-134 319-499 (1002)
7 3av4_A DNA (cytosine-5)-methyl 99.8 2.8E-21 9.6E-26 176.5 11.6 127 6-134 632-810 (1330)
8 2fl7_A Regulatory protein SIR3 99.7 9.5E-17 3.2E-21 121.5 11.3 126 14-140 44-194 (232)
9 1m4z_A Origin recognition comp 99.7 9.4E-17 3.2E-21 122.0 10.9 127 14-141 44-195 (238)
10 1wep_A PHF8; structural genomi 98.1 7.7E-07 2.6E-11 56.8 2.1 34 130-163 3-36 (79)
11 3kqi_A GRC5, PHD finger protei 97.7 7.6E-06 2.6E-10 51.5 0.9 28 136-163 7-34 (75)
12 1we9_A PHD finger family prote 97.5 3.1E-05 1.1E-09 47.1 1.8 25 139-163 6-31 (64)
13 2vpb_A Hpygo1, pygopus homolog 97.5 2.4E-05 8.3E-10 47.9 0.8 23 141-163 11-34 (65)
14 2kgg_A Histone demethylase jar 97.5 3.4E-05 1.2E-09 45.1 1.3 23 141-163 5-28 (52)
15 1wee_A PHD finger family prote 97.3 6.6E-05 2.3E-09 46.8 1.3 28 136-163 13-40 (72)
16 3o7a_A PHD finger protein 13 v 97.2 7.8E-05 2.7E-09 43.4 0.9 23 140-163 5-27 (52)
17 1wem_A Death associated transc 97.0 0.00017 5.9E-09 45.3 1.3 26 137-163 14-39 (76)
18 3o70_A PHD finger protein 13; 97.0 0.00016 5.5E-09 44.5 1.1 26 137-163 17-42 (68)
19 3kv5_D JMJC domain-containing 96.6 0.0005 1.7E-08 57.6 1.1 30 134-163 32-61 (488)
20 1wew_A DNA-binding family prot 96.3 0.0016 5.5E-08 41.0 1.9 26 137-163 14-41 (78)
21 2k16_A Transcription initiatio 94.8 0.0084 2.9E-07 37.2 1.0 24 139-163 18-42 (75)
22 2lv9_A Histone-lysine N-methyl 94.3 0.013 4.5E-07 38.4 1.1 23 140-163 29-51 (98)
23 2rsd_A E3 SUMO-protein ligase 93.8 0.022 7.6E-07 34.7 1.3 26 137-163 8-35 (68)
24 1wen_A Inhibitor of growth fam 93.6 0.024 8.1E-07 35.0 1.3 24 138-163 15-41 (71)
25 3c6w_A P28ING5, inhibitor of g 93.3 0.015 5.3E-07 34.5 0.0 24 138-163 8-34 (59)
26 1weu_A Inhibitor of growth fam 93.3 0.022 7.5E-07 36.9 0.8 24 138-163 35-61 (91)
27 2l7p_A Histone-lysine N-methyl 92.8 0.044 1.5E-06 36.0 1.7 18 146-163 20-37 (100)
28 2g6q_A Inhibitor of growth pro 92.8 0.02 6.8E-07 34.3 0.0 24 138-163 10-36 (62)
29 2jmi_A Protein YNG1, ING1 homo 92.8 0.041 1.4E-06 35.5 1.5 25 137-163 24-51 (90)
30 1x4i_A Inhibitor of growth pro 92.6 0.051 1.7E-06 33.3 1.7 24 138-163 5-31 (70)
31 2vnf_A ING 4, P29ING4, inhibit 92.4 0.025 8.5E-07 33.6 0.0 24 138-163 9-35 (60)
32 3pur_A Lysine-specific demethy 87.8 0.19 6.6E-06 42.2 1.7 17 147-163 51-67 (528)
33 2e61_A Zinc finger CW-type PWW 86.0 0.4 1.4E-05 29.2 2.0 17 147-163 11-29 (69)
34 2a7y_A Hypothetical protein RV 80.9 1.8 6.3E-05 27.1 3.5 39 24-64 7-45 (83)
35 2m0o_A PHD finger protein 1; t 75.7 5.6 0.00019 24.5 4.5 29 21-51 25-53 (79)
36 4hcz_A PHD finger protein 1; p 73.4 8.2 0.00028 22.4 4.6 28 22-51 3-30 (58)
37 2eqj_A Metal-response element- 71.8 7.9 0.00027 23.2 4.4 28 22-51 13-40 (66)
38 1f62_A Transcription factor WS 71.6 1.5 5.2E-05 24.5 1.2 19 144-163 6-24 (51)
39 3zzs_A Transcription attenuati 70.8 6.7 0.00023 23.1 3.8 48 59-106 13-60 (65)
40 2lo3_A SAGA-associated factor 70.5 3.7 0.00013 22.3 2.5 17 146-162 9-25 (44)
41 2gfu_A DNA mismatch repair pro 67.8 3.6 0.00012 28.0 2.7 44 21-66 21-69 (134)
42 2ro0_A Histone acetyltransfera 64.5 14 0.00047 23.5 4.8 28 22-52 23-50 (92)
43 2l8d_A Lamin-B receptor; DNA b 63.6 7.3 0.00025 23.2 3.0 29 21-50 8-36 (66)
44 3llr_A DNA (cytosine-5)-methyl 63.5 5.9 0.0002 27.8 3.1 44 21-67 15-61 (154)
45 3zte_A Tryptophan operon RNA-b 61.6 9.4 0.00032 23.2 3.3 49 59-107 21-69 (78)
46 2ku3_A Bromodomain-containing 60.9 4.1 0.00014 24.6 1.7 23 141-163 19-42 (71)
47 1ri0_A Hepatoma-derived growth 60.7 3.8 0.00013 27.0 1.7 43 20-65 17-61 (110)
48 1gtf_A Trp RNA-binding attenua 60.3 11 0.00036 22.6 3.3 49 59-107 17-65 (74)
49 2xk0_A Polycomb protein PCL; t 60.0 11 0.00036 22.7 3.3 26 22-49 15-40 (69)
50 3qby_A Hepatoma-derived growth 58.6 6.6 0.00023 25.0 2.5 41 21-64 4-46 (94)
51 2dig_A Lamin-B receptor; tudor 56.8 13 0.00044 22.2 3.3 29 21-50 11-39 (68)
52 2l89_A PWWP domain-containing 55.8 10 0.00034 24.8 3.1 43 21-65 4-52 (108)
53 2daq_A WHSC1L1 protein, isofor 55.5 4.8 0.00016 26.3 1.4 46 18-65 4-55 (110)
54 4fu6_A PC4 and SFRS1-interacti 53.6 8.9 0.0003 26.6 2.7 43 21-66 21-65 (153)
55 1khc_A DNA cytosine-5 methyltr 51.7 7.6 0.00026 26.9 2.0 45 20-66 9-55 (147)
56 2e5p_A Protein PHF1, PHD finge 51.0 37 0.0013 20.2 5.0 29 21-51 8-36 (68)
57 1nz9_A Transcription antitermi 48.3 22 0.00076 20.1 3.4 44 22-69 4-47 (58)
58 2e2z_A TIM15; protein import, 48.2 5.5 0.00019 25.9 0.8 17 147-163 31-47 (100)
59 2yt5_A Metal-response element- 48.1 8.1 0.00028 22.5 1.5 21 143-163 11-32 (66)
60 2l43_A N-teminal domain from h 47.8 6.3 0.00021 24.8 1.0 23 141-163 28-51 (88)
61 2e6z_A Transcription elongatio 46.6 14 0.00047 21.3 2.3 41 21-67 6-46 (59)
62 3p8d_A Medulloblastoma antigen 46.2 24 0.00081 21.1 3.4 37 22-65 6-42 (67)
63 2rnz_A Histone acetyltransfera 46.1 38 0.0013 21.6 4.6 28 22-52 25-52 (94)
64 3bcw_A Uncharacterized protein 41.1 29 0.00098 22.9 3.6 19 18-36 86-104 (123)
65 2jrp_A Putative cytoplasmic pr 40.3 11 0.00036 23.6 1.2 19 144-162 8-26 (81)
66 2e5q_A PHD finger protein 19; 39.2 22 0.00076 20.9 2.4 29 21-51 6-34 (63)
67 1wgs_A MYST histone acetyltran 38.6 61 0.0021 21.9 5.0 30 21-52 11-40 (133)
68 2j5u_A MREC protein; bacterial 37.4 1.2E+02 0.004 22.7 6.9 44 22-65 169-214 (255)
69 4a4f_A SurviVal of motor neuro 36.1 43 0.0015 19.3 3.4 29 21-50 7-35 (64)
70 2opk_A Hypothetical protein; p 36.0 30 0.001 22.1 3.0 22 14-35 66-89 (112)
71 1wev_A Riken cDNA 1110020M19; 35.9 21 0.00073 22.2 2.1 20 143-162 21-41 (88)
72 1o5u_A Novel thermotoga mariti 34.8 39 0.0013 21.3 3.3 22 14-35 62-84 (101)
73 2f5k_A MORF-related gene 15 is 34.7 60 0.0021 20.9 4.2 28 21-51 21-48 (102)
74 2e6r_A Jumonji/ARID domain-con 34.4 10 0.00035 24.0 0.4 22 141-163 18-40 (92)
75 3lwc_A Uncharacterized protein 33.6 31 0.0011 22.4 2.8 22 14-35 72-93 (119)
76 1vq8_T 50S ribosomal protein L 32.7 50 0.0017 22.0 3.6 28 22-51 42-69 (120)
77 2lcc_A AT-rich interactive dom 31.2 24 0.0008 21.5 1.7 30 22-51 5-35 (76)
78 3p8b_B Transcription antitermi 30.5 55 0.0019 22.3 3.7 44 21-68 90-133 (152)
79 2eko_A Histone acetyltransfera 30.3 51 0.0017 20.6 3.2 32 21-52 8-41 (87)
80 3j21_U 50S ribosomal protein L 30.0 64 0.0022 21.5 3.8 29 22-52 45-73 (121)
81 3vhs_A ATPase wrnip1; zinc fin 30.0 21 0.00071 17.1 1.0 10 153-162 5-14 (29)
82 4axo_A EUTQ, ethanolamine util 29.9 34 0.0012 23.6 2.6 22 14-35 97-118 (151)
83 2oqk_A Putative translation in 29.7 44 0.0015 22.0 3.0 26 23-50 71-96 (117)
84 2zjr_R 50S ribosomal protein L 29.6 26 0.00087 23.2 1.8 28 22-51 15-42 (115)
85 3h8z_A FragIle X mental retard 29.1 65 0.0022 21.7 3.8 28 22-49 60-90 (128)
86 3v43_A Histone acetyltransfera 29.0 22 0.00076 23.1 1.4 20 144-163 67-86 (112)
87 2pyt_A Ethanolamine utilizatio 29.0 34 0.0011 22.8 2.4 22 14-35 88-109 (133)
88 3v2d_Y 50S ribosomal protein L 28.5 60 0.002 21.3 3.4 29 22-52 6-34 (110)
89 2equ_A PHD finger protein 20-l 28.1 61 0.0021 19.5 3.2 28 21-50 8-35 (74)
90 3qii_A PHD finger protein 20; 27.6 67 0.0023 20.1 3.4 37 21-64 20-56 (85)
91 2qqr_A JMJC domain-containing 27.4 65 0.0022 21.4 3.5 28 21-50 4-31 (118)
92 1yop_A KTI11P; zinc finger, me 27.1 21 0.00071 22.3 0.9 12 152-163 43-54 (83)
93 2jr7_A DPH3 homolog; DESR1, CS 26.9 21 0.00071 22.6 0.9 11 153-163 44-54 (89)
94 2ozj_A Cupin 2, conserved barr 26.6 49 0.0017 20.6 2.8 22 14-35 71-92 (114)
95 1mhn_A SurviVal motor neuron p 26.1 85 0.0029 17.6 3.5 28 22-50 3-30 (59)
96 3m9q_A Protein MALE-specific l 25.7 1.3E+02 0.0046 19.2 4.7 37 16-52 13-51 (101)
97 2qf4_A Cell shape determining 25.0 1.2E+02 0.004 21.2 4.7 46 21-66 107-154 (172)
98 2do3_A Transcription elongatio 24.6 68 0.0023 19.2 2.9 29 21-51 16-44 (69)
99 2zkr_t 60S ribosomal protein L 24.4 67 0.0023 22.1 3.2 29 22-52 48-77 (145)
100 2lqk_A Transcriptional regulat 29.6 17 0.00057 21.8 0.0 24 22-51 6-29 (70)
101 1v70_A Probable antibiotics sy 23.6 63 0.0021 19.2 2.8 20 16-35 64-83 (105)
102 2vpv_A Protein MIF2, MIF2P; nu 23.3 53 0.0018 23.1 2.6 22 14-35 123-144 (166)
103 3r8s_U 50S ribosomal protein L 23.2 82 0.0028 20.3 3.3 28 22-51 3-30 (102)
104 2puy_A PHD finger protein 21A; 22.9 26 0.00088 20.0 0.7 12 152-163 15-26 (60)
105 3shb_A E3 ubiquitin-protein li 22.6 26 0.00089 21.4 0.7 12 152-163 39-50 (77)
106 1wge_A Hypothetical protein 26 22.4 29 0.00098 21.6 0.9 11 153-163 51-61 (83)
107 1g5v_A SurviVal motor neuron p 22.1 1E+02 0.0035 19.1 3.5 28 22-50 10-37 (88)
108 2b8m_A Hypothetical protein MJ 21.9 85 0.0029 19.5 3.3 22 14-35 60-82 (117)
109 2i45_A Hypothetical protein; n 21.7 64 0.0022 19.8 2.6 22 14-35 61-83 (107)
110 1e0b_A SWI6 protein; chromatin 21.5 1.3E+02 0.0046 17.7 4.2 24 39-63 10-33 (68)
111 2yql_A PHD finger protein 21A; 21.4 32 0.0011 19.2 0.9 12 152-163 19-30 (56)
112 2pfw_A Cupin 2, conserved barr 21.2 72 0.0025 19.7 2.8 21 15-35 68-88 (116)
113 4hae_A CDY-like 2, chromodomai 21.2 1.5E+02 0.0051 18.0 5.3 27 38-65 22-48 (81)
114 4h7l_A Uncharacterized protein 21.1 43 0.0015 23.4 1.7 21 15-35 82-102 (157)
115 3fjs_A Uncharacterized protein 21.1 57 0.002 20.6 2.3 22 14-35 69-90 (114)
116 3u5e_Y L33, YL33, 60S ribosoma 20.8 1.1E+02 0.0037 20.6 3.6 29 22-52 49-77 (127)
117 3mlq_E Transcription-repair co 20.7 47 0.0016 19.8 1.6 24 22-51 2-25 (71)
118 2rsn_A Chromo domain-containin 20.5 1.5E+02 0.005 17.7 4.2 29 39-68 21-49 (75)
119 2jvv_A Transcription antitermi 20.1 1.2E+02 0.0041 21.1 4.0 45 22-70 127-171 (181)
120 3mhs_E SAGA-associated factor 20.1 50 0.0017 21.1 1.7 18 145-162 66-83 (96)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=100.00 E-value=1.9e-37 Score=229.24 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=105.8
Q ss_pred CCCCCCceeeeeEEEccCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcccccCCCc
Q 031243 2 AKPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSK 81 (163)
Q Consensus 2 ~~~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~ 81 (163)
+++.++|.+|+++.++|. +|++||+|||.+++.+.+++||+|++||++.+|+ ++++|+|||||+||.++....+.+|
T Consensus 8 ~~~~~~r~~y~~~~~~g~--~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~-~~v~v~WfyRPeet~~~~~~~~~~~ 84 (174)
T 1w4s_A 8 GLSSLHRTYSQDCSFKNS--MYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGE-KWLYGCWFYRPNETFHLATRKFLEK 84 (174)
T ss_dssp --------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCC-EEEEEEEEECGGGSCCCTTCEEETT
T ss_pred cccCCCcEEeEEEEECCE--EEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCC-EEEEEEEecCHHHcccccCCcCCCC
Confidence 567889999999999987 9999999999998866789999999999998898 9999999999999998764445699
Q ss_pred eeEEeccccccccccEeeecEEEecccccccCC---CCCCeEEEeeeeecCCCcccCCCCceE
Q 031243 82 EVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA---VGNDDFFCRFEYNSSSGAFNPDRVAVY 141 (163)
Q Consensus 82 Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~---~~~~~ffcr~~yd~~~~~f~p~~~~~~ 141 (163)
|||+|++.+++|+++|.|||.|+...+|.+..+ .+.++|||++.||+.+++|.+..-+.+
T Consensus 85 EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~w~~ 147 (174)
T 1w4s_A 85 EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTM 147 (174)
T ss_dssp EEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSSCCC
T ss_pred eeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCccCCC
Confidence 999999999999999999999999999987765 346899999999999999997544333
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.96 E-value=6.2e-29 Score=222.04 Aligned_cols=129 Identities=21% Similarity=0.398 Sum_probs=113.9
Q ss_pred CCCCCceeeeeEEEccCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcccccCCCce
Q 031243 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (163)
Q Consensus 3 ~~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (163)
|+..++.+|+++.++|. +|++||+|+|.+++++.++|||+|++||++.+|. ++|+|+|||||+||.++++ ++++|
T Consensus 141 k~~~~~~~Y~s~~v~g~--~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~-k~~~v~Wf~rp~ET~lg~~--~~~~E 215 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDAE--TLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNG-QMFHAHWFCAGTDTVLGAT--SDPLE 215 (1002)
T ss_dssp CCBTTEEECSEEEETTE--EEETTCEEEECBSSTTSCCEEEEEEEEEEETTTE-EEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred ccccCceeeeEEEECCE--EEecCCEEEEecCCCCCCceEEEEEEEeecCCCC-eEEEEEEEecchhcccccC--CCCCc
Confidence 55678999999999986 9999999999998876778999999999998887 9999999999999999988 78999
Q ss_pred eEEeccccccccccEeeecEEEeccc---cccc---C---C---CCCCeEEEeeeeecCCCcccCC
Q 031243 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKL---D---A---VGNDDFFCRFEYNSSSGAFNPD 136 (163)
Q Consensus 83 lf~s~~~d~~~~~~I~gkc~V~~~~~---~~~~---~---~---~~~~~ffcr~~yd~~~~~f~p~ 136 (163)
||+|++++++++++|.|||.|+.... |... . + ..+++|||++.||+++++|.+.
T Consensus 216 lFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~l 281 (1002)
T 3swr_A 216 LFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESP 281 (1002)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECC
T ss_pred eEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCC
Confidence 99999999999999999999998654 2211 1 1 2368999999999999999953
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.94 E-value=4.4e-27 Score=214.41 Aligned_cols=128 Identities=21% Similarity=0.405 Sum_probs=109.9
Q ss_pred CCCCCceeeeeEEEccCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcccccCCCce
Q 031243 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (163)
Q Consensus 3 ~~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (163)
|..+++.||+++.++|. +|++||+|||.+++++.++|||+|++||++.+|. .+|+|+|||||+||.+++. ++++|
T Consensus 452 k~~~~~~~Y~~~~v~g~--~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~-~~~~~~WfyRp~ETvlg~~--~~~rE 526 (1330)
T 3av4_A 452 KIEENRTYYQKVSIDEE--MLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQ-MMFHAHWFCAGTDTVLGAT--SDPLE 526 (1330)
T ss_dssp CCC--CEEECSEEEESS--EEETTCEEEECBCCSSCCCEEEEEEEEEEETTCC-EEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred eccCCceeeeEEEECCE--EEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCC-EEEEEEEEEchHHcccccc--cCCCe
Confidence 45678999999999997 9999999999988755678999999999999998 9999999999999999886 78999
Q ss_pred eEEeccccccccccEeeecEEEeccc---ccccC--------C--CCCCeEEEeeeeecCCCcccC
Q 031243 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKLD--------A--VGNDDFFCRFEYNSSSGAFNP 135 (163)
Q Consensus 83 lf~s~~~d~~~~~~I~gkc~V~~~~~---~~~~~--------~--~~~~~ffcr~~yd~~~~~f~p 135 (163)
||+|++++++|+++|.|||.|++..+ |.+.. . ...+.|||++.||+..++|..
T Consensus 527 lFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~ 592 (1330)
T 3av4_A 527 LFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 592 (1330)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEEC
T ss_pred EEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCC
Confidence 99999999999999999999999665 43211 1 345689999999999999984
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.93 E-value=9.4e-25 Score=156.74 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=103.7
Q ss_pred ceeeeeEEEccC---CcEEccCCEEEEecCCCCCCCeEEEEeEEEecC--CCCeEEEEEEEeecccccCCccccc----C
Q 031243 8 RRTLESYTVKSI---SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWYYRPEESIGGRRQF----H 78 (163)
Q Consensus 8 ~~~y~~~~~~g~---~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~--~g~~~~v~v~Wfyrp~e~~~~~~~~----~ 78 (163)
-.+|+++.++-. ..++++||+|+|.+++. +.||||+|++|+++. ......++||||+||+|+|.+.... +
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 358999999533 26999999999999885 778999999998852 2223889999999999999876432 4
Q ss_pred CCceeEEeccc---cccccccEeeecEEEecccccccCC--CCCCeEEEeeeeecCCCcccC
Q 031243 79 GSKEVFLSDHH---DIQSADTIEGKCTVHSFKSYTKLDA--VGNDDFFCRFEYNSSSGAFNP 135 (163)
Q Consensus 79 ~~~Elf~s~~~---d~~~~~~I~gkc~V~~~~~~~~~~~--~~~~~ffcr~~yd~~~~~f~p 135 (163)
+++|||++++. +.+++++|+|+|.|+.++.+..++. ...++||.|..+|.+. |.|
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k~--f~p 159 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKD--FAP 159 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSSC--EEE
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCCc--cee
Confidence 68999999987 4899999999999999988877642 5688999999998776 876
No 5
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.88 E-value=5.6e-23 Score=181.12 Aligned_cols=126 Identities=20% Similarity=0.372 Sum_probs=107.6
Q ss_pred CCceeeeeEEEccCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCCcc-------cccC
Q 031243 6 APRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGR-------RQFH 78 (163)
Q Consensus 6 ~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~-------~~~~ 78 (163)
.+|+||.++.++|. +|++||+|||+++. ..+.+||+|.+|+++.+|. .+++|+|||||+||..+. ....
T Consensus 43 ~~~~~~~~~~~~~~--~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~-~~~~~~~~~r~~d~~~~~~~~~~~~~~~~ 118 (784)
T 4ft4_B 43 KARCHYRSAKVDNV--VYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQC-HYFTCRWFFRAEDTVINSLVSISVDGHKH 118 (784)
T ss_dssp CEEEECSEEEETTE--EEETTCEEEECCST-TSCCEEEEEEEEEEETTSC-EEEEEEEEEEGGGSTTGGGGGCCBTTBCC
T ss_pred ccceeeeeeeECCE--EEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCC-EEEEEEEeeChhhhccccccccccccccc
Confidence 46899999999987 99999999999866 4688999999999999998 999999999999998653 2346
Q ss_pred CCceeEEeccccccccccEeeecEEEecccccccCC----CCCCeEEEeeeeecCCCcccC
Q 031243 79 GSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA----VGNDDFFCRFEYNSSSGAFNP 135 (163)
Q Consensus 79 ~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~----~~~~~ffcr~~yd~~~~~f~p 135 (163)
++||||+|++++++++++|.+||+|++.....+... .....|||++.|.....+|..
T Consensus 119 d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 179 (784)
T 4ft4_B 119 DPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFAN 179 (784)
T ss_dssp CTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEE
T ss_pred ccceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCccC
Confidence 789999999999999999999999999875443322 234579999999998888873
No 6
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.88 E-value=2.9e-22 Score=179.21 Aligned_cols=128 Identities=23% Similarity=0.384 Sum_probs=106.8
Q ss_pred CCCceeeeeEEEccCCcEEccCCEEEEecCC-----------------------------------------CCCCCeEE
Q 031243 5 KAPRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVA 43 (163)
Q Consensus 5 ~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~i~ 43 (163)
-.|+++|.++.++|. +|++||+|||.++. ...+++||
T Consensus 319 ~~~~~~~~~~~~~g~--~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKNGI--LYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEETTE--EEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEECCE--EEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 357899999999987 99999999999932 12367899
Q ss_pred EEeEEEecCCCC------eEEEEEEEeecccccCCccc--ccCCCceeEEeccccccccccEeeecEEEecccccccCC-
Q 031243 44 KIERIESDARGA------NVKVHVRWYYRPEESIGGRR--QFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA- 114 (163)
Q Consensus 44 ~I~~i~~~~~g~------~~~v~v~Wfyrp~e~~~~~~--~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~~- 114 (163)
+|++|+.+.++. ..+++|+|||||+||..+.. ...+.||||+|++.+.+|+++|.|||.|++.+++.....
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999765432 38999999999999986543 345789999999999999999999999999999875543
Q ss_pred ---CCCCeEEEeeeeecCCCccc
Q 031243 115 ---VGNDDFFCRFEYNSSSGAFN 134 (163)
Q Consensus 115 ---~~~~~ffcr~~yd~~~~~f~ 134 (163)
.+.+.||++..||+.+++|.
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~ 499 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFE 499 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEE
T ss_pred hccCCCCeEEEEEEEeCCCCeee
Confidence 34577777799999999998
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.85 E-value=2.8e-21 Score=176.48 Aligned_cols=127 Identities=23% Similarity=0.399 Sum_probs=107.3
Q ss_pred CCceeeeeEEEccCCcEEccCCEEEEecCC-----------------------------------------CCCCCeEEE
Q 031243 6 APRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVAK 44 (163)
Q Consensus 6 ~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~i~~ 44 (163)
.|+.+|.+|+++|. +|++||+|||.++. ...+++||+
T Consensus 632 ~~~~~Y~~~~~~g~--~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Igq 709 (1330)
T 3av4_A 632 DGRVYCSSITKNGV--VYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGR 709 (1330)
T ss_dssp SSSEEEEEEEETTE--EEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEE
T ss_pred cCceeeeEEEECCE--EEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEE
Confidence 47899999999986 99999999998862 024568999
Q ss_pred EeEEEecCCC-----CeEEEEEEEeecccccCCcc--cccCCCceeEEeccccccccccEeeecEEEecccccccC-C--
Q 031243 45 IERIESDARG-----ANVKVHVRWYYRPEESIGGR--RQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLD-A-- 114 (163)
Q Consensus 45 I~~i~~~~~g-----~~~~v~v~Wfyrp~e~~~~~--~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~~-~-- 114 (163)
|.+||.+.+. .+.+++|+|||||+||..+. ...++.||||+|++.+.+|+++|.|||.|++..++.... +
T Consensus 710 I~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~ 789 (1330)
T 3av4_A 710 IKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYS 789 (1330)
T ss_dssp EEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHH
T ss_pred EEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccccccccc
Confidence 9999987541 23899999999999998764 224689999999999999999999999999998887642 2
Q ss_pred -CCCCeEEEeeeeecCCCccc
Q 031243 115 -VGNDDFFCRFEYNSSSGAFN 134 (163)
Q Consensus 115 -~~~~~ffcr~~yd~~~~~f~ 134 (163)
.+.+.|||+..||+.+++|.
T Consensus 790 ~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 790 QGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp HTSTTEEEESCEEETTTTEEE
T ss_pred cCCCCeEEEEEEecccCCeec
Confidence 35789999999999999997
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.70 E-value=9.5e-17 Score=121.53 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=97.8
Q ss_pred EEEccCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCC-------ccc--------cc-
Q 031243 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~-------~~~--------~~- 77 (163)
+.....|..+++||.|.|..++ .+.+.++.|.+|.-....+-+.+.|.||+|..|+.. .+. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (232)
T 2fl7_A 44 LKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFY 122 (232)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 4555567899999999998876 356778899999877622238899999999999965 221 23
Q ss_pred -------CCCceeEEeccccccccccEeeecEEEeccccccc--CCCCCCeEEEeeeeecCCCcccCCCCce
Q 031243 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNPDRVAV 140 (163)
Q Consensus 78 -------~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p~~~~~ 140 (163)
...||||+|.+.+.|-+.+|+++|.|++.++|..+ +...+.+||||+++|+....|.+..|..
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~ 194 (232)
T 2fl7_A 123 KDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDIFQ 194 (232)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCHHH
T ss_pred hhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccccHHH
Confidence 68999999999999999999999999999999977 3355799999999999888898766543
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.70 E-value=9.4e-17 Score=121.97 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=104.5
Q ss_pred EEEccCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccccCC-------ccc--------cc-
Q 031243 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~-------~~~--------~~- 77 (163)
+.....|..+++||.|.|..++ .+.+.++.|.+|.-....+-+.+.|.||+|..|+.. .+. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (238)
T 1m4z_A 44 LKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYY 122 (238)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 5555567899999999998875 356778899999887633348899999999999965 221 23
Q ss_pred -------CCCceeEEeccccccccccEeeecEEEeccccccc--CCCCCCeEEEeeeeecCCCcccCCCCceE
Q 031243 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNPDRVAVY 141 (163)
Q Consensus 78 -------~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p~~~~~~ 141 (163)
...||||+|.+.+.|-+.+|+++|.|++.++|..+ +...+.+||||+++|+....|.+..|...
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~ 195 (238)
T 1m4z_A 123 NKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDV 195 (238)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHHHH
T ss_pred hhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHHHH
Confidence 68999999999999999999999999999999977 34667999999999998888998666443
No 10
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.15 E-value=7.7e-07 Score=56.75 Aligned_cols=34 Identities=44% Similarity=1.036 Sum_probs=31.6
Q ss_pred CCcccCCCCceEEeeCCCCCCCcceeeCCCCCCC
Q 031243 130 SGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 130 ~~~f~p~~~~~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
.+.|.++.....|+|.+|++++..||||+.|+.|
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~W 36 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDW 36 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCE
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCCc
Confidence 5678898899999999999999999999999998
No 11
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.71 E-value=7.6e-06 Score=51.54 Aligned_cols=28 Identities=43% Similarity=1.316 Sum_probs=25.5
Q ss_pred CCCceEEeeCCCCCCCcceeeCCCCCCC
Q 031243 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 136 ~~~~~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
+.....|+|.+|++++..||||+.|+.|
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~W 34 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDW 34 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCE
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCC
Confidence 3567899999999999999999999998
No 12
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.53 E-value=3.1e-05 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.878 Sum_probs=23.2
Q ss_pred ceEE-eeCCCCCCCcceeeCCCCCCC
Q 031243 139 AVYC-KCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 139 ~~~C-~C~~~~npd~~~~~C~~C~~w 163 (163)
..+| +|.+|++++..||||+.|..|
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~W 31 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMW 31 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCE
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCC
Confidence 4689 999999999999999999998
No 13
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.47 E-value=2.4e-05 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.731 Sum_probs=21.2
Q ss_pred EEeeCCCCCCCcceeeCC-CCCCC
Q 031243 141 YCKCEMPYNPDDLMVQCE-GCSDW 163 (163)
Q Consensus 141 ~C~C~~~~npd~~~~~C~-~C~~w 163 (163)
=++|.+|+||+..||+|| +|++|
T Consensus 11 C~~C~~p~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEASCQKW 34 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTTTCCE
T ss_pred CccCCCccCCCCCeEecccCcccc
Confidence 457899999999999999 99998
No 14
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.47 E-value=3.4e-05 Score=45.06 Aligned_cols=23 Identities=35% Similarity=0.917 Sum_probs=21.2
Q ss_pred EEeeCCCCCCCcceeeCC-CCCCC
Q 031243 141 YCKCEMPYNPDDLMVQCE-GCSDW 163 (163)
Q Consensus 141 ~C~C~~~~npd~~~~~C~-~C~~w 163 (163)
-|+|.+|++++..+|+|+ .|++|
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~W 28 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEW 28 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCE
T ss_pred CCCCcCccCCCCcEEEeCCCCCcc
Confidence 478999999999999999 89998
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.31 E-value=6.6e-05 Score=46.76 Aligned_cols=28 Identities=36% Similarity=0.904 Sum_probs=24.9
Q ss_pred CCCceEEeeCCCCCCCcceeeCCCCCCC
Q 031243 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 136 ~~~~~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
+.+...|+|.++.+....||||+.|..|
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W 40 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVW 40 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEE
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCc
Confidence 4678999999998777789999999998
No 16
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.22 E-value=7.8e-05 Score=43.45 Aligned_cols=23 Identities=35% Similarity=1.070 Sum_probs=21.0
Q ss_pred eEEeeCCCCCCCcceeeCCCCCCC
Q 031243 140 VYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 140 ~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
..|+|.+|.+ +..||+|++|+.|
T Consensus 5 ~~C~C~~~~~-~~~MI~Cd~C~~W 27 (52)
T 3o7a_A 5 VTCFCMKPFA-GRPMIECNECHTW 27 (52)
T ss_dssp BCSTTCCBCT-TCCEEECTTTCCE
T ss_pred eEEEeCCcCC-CCCEEEcCCCCcc
Confidence 6899999977 7799999999998
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.05 E-value=0.00017 Score=45.26 Aligned_cols=26 Identities=38% Similarity=1.141 Sum_probs=22.6
Q ss_pred CCceEEeeCCCCCCCcceeeCCCCCCC
Q 031243 137 RVAVYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 137 ~~~~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
.....|+|.+|.+ +..||+|+.|+.|
T Consensus 14 ~~~~~C~C~~~~~-~~~MI~Cd~C~~W 39 (76)
T 1wem_A 14 PNALYCICRQPHN-NRFMICCDRCEEW 39 (76)
T ss_dssp TTCCCSTTCCCCC-SSCEEECSSSCCE
T ss_pred CCCCEEECCCccC-CCCEEEeCCCCCc
Confidence 4468999999986 6689999999998
No 18
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.04 E-value=0.00016 Score=44.54 Aligned_cols=26 Identities=31% Similarity=0.908 Sum_probs=22.4
Q ss_pred CCceEEeeCCCCCCCcceeeCCCCCCC
Q 031243 137 RVAVYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 137 ~~~~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
.-...|+|.++.+ +..||+|+.|+.|
T Consensus 17 ~~~~~CiC~~~~~-~~~MIqCd~C~~W 42 (68)
T 3o70_A 17 QGLVTCFCMKPFA-GRPMIECNECHTW 42 (68)
T ss_dssp TTCCCSTTCCCCT-TCCEEECTTTCCE
T ss_pred CCceEeECCCcCC-CCCEEECCCCCcc
Confidence 3458999999976 7789999999998
No 19
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.60 E-value=0.0005 Score=57.63 Aligned_cols=30 Identities=40% Similarity=1.160 Sum_probs=26.4
Q ss_pred cCCCCceEEeeCCCCCCCcceeeCCCCCCC
Q 031243 134 NPDRVAVYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 134 ~p~~~~~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
.++.....|+|.+|.+++..|||||.|+.|
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~W 61 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDW 61 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCE
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCc
Confidence 344556899999999999999999999998
No 20
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.30 E-value=0.0016 Score=41.01 Aligned_cols=26 Identities=38% Similarity=0.888 Sum_probs=22.9
Q ss_pred CCceEEeeCCCCCCCcceeeCC--CCCCC
Q 031243 137 RVAVYCKCEMPYNPDDLMVQCE--GCSDW 163 (163)
Q Consensus 137 ~~~~~C~C~~~~npd~~~~~C~--~C~~w 163 (163)
.+...|+|.++ .++..||+|+ .|..|
T Consensus 14 ~~~~~CiC~~~-~~~g~MI~CD~~~C~~W 41 (78)
T 1wew_A 14 EIKVRCVCGNS-LETDSMIQCEDPRCHVW 41 (78)
T ss_dssp CCCCCCSSCCC-CCCSCEEECSSTTTCCE
T ss_pred CCCEEeECCCc-CCCCCEEEECCccCCcc
Confidence 46689999999 5678999999 99998
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.78 E-value=0.0084 Score=37.21 Aligned_cols=24 Identities=33% Similarity=1.030 Sum_probs=19.8
Q ss_pred ceEE-eeCCCCCCCcceeeCCCCCCC
Q 031243 139 AVYC-KCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 139 ~~~C-~C~~~~npd~~~~~C~~C~~w 163 (163)
...| +|.++.+ +..+|+||+|..|
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~w 42 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDW 42 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSE
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcc
Confidence 3578 8999875 4589999999988
No 22
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.29 E-value=0.013 Score=38.41 Aligned_cols=23 Identities=35% Similarity=0.983 Sum_probs=19.6
Q ss_pred eEEeeCCCCCCCcceeeCCCCCCC
Q 031243 140 VYCKCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 140 ~~C~C~~~~npd~~~~~C~~C~~w 163 (163)
.-|+|..+.+ +..+|+|++|..|
T Consensus 29 vrCiC~~~~~-~~~mi~Cd~C~~w 51 (98)
T 2lv9_A 29 TRCICGFTHD-DGYMICCDKCSVW 51 (98)
T ss_dssp CCCTTSCCSC-SSCEEEBTTTCBE
T ss_pred EEeECCCccC-CCcEEEcCCCCCc
Confidence 5799999865 4589999999998
No 23
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=93.75 E-value=0.022 Score=34.67 Aligned_cols=26 Identities=38% Similarity=0.925 Sum_probs=20.3
Q ss_pred CCceEEeeCCCCCCCcceeeCCC--CCCC
Q 031243 137 RVAVYCKCEMPYNPDDLMVQCEG--CSDW 163 (163)
Q Consensus 137 ~~~~~C~C~~~~npd~~~~~C~~--C~~w 163 (163)
+....|+|.++.. +..||+|++ |+.|
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W 35 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVW 35 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEE
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCe
Confidence 3457899988744 568999995 9988
No 24
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=93.61 E-value=0.024 Score=34.95 Aligned_cols=24 Identities=33% Similarity=0.976 Sum_probs=20.0
Q ss_pred CceEEeeCCCCCCCcceeeCCC--CC-CC
Q 031243 138 VAVYCKCEMPYNPDDLMVQCEG--CS-DW 163 (163)
Q Consensus 138 ~~~~C~C~~~~npd~~~~~C~~--C~-~w 163 (163)
...+|+|.++.+ ..||+||+ |. .|
T Consensus 15 ~~~~C~C~~~~~--g~MI~CD~~~C~~~w 41 (71)
T 1wen_A 15 EPTYCLCHQVSY--GEMIGCDNPDCSIEW 41 (71)
T ss_dssp SCCCSTTCCCSC--SSEECCSCSSCSCCC
T ss_pred CCCEEECCCCCC--CCEeEeeCCCCCCcc
Confidence 457999999875 57999999 77 67
No 25
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=93.29 E-value=0.015 Score=34.46 Aligned_cols=24 Identities=29% Similarity=0.951 Sum_probs=19.7
Q ss_pred CceEEeeCCCCCCCcceeeCCC--CC-CC
Q 031243 138 VAVYCKCEMPYNPDDLMVQCEG--CS-DW 163 (163)
Q Consensus 138 ~~~~C~C~~~~npd~~~~~C~~--C~-~w 163 (163)
...+|+|+++.+ ..||+||+ |. .|
T Consensus 8 e~~yC~C~~~~~--g~mi~CD~~~C~~~w 34 (59)
T 3c6w_A 8 EPTYCLCHQVSY--GEMIGCDNPDCPIEW 34 (59)
T ss_dssp CCEETTTTEECC--SEEEECSCTTCSSCE
T ss_pred CCcEEECCCCCC--CCeeEeeCCCCCCCC
Confidence 458999999875 57999999 76 67
No 26
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.28 E-value=0.022 Score=36.88 Aligned_cols=24 Identities=33% Similarity=0.976 Sum_probs=20.0
Q ss_pred CceEEeeCCCCCCCcceeeCCC--CC-CC
Q 031243 138 VAVYCKCEMPYNPDDLMVQCEG--CS-DW 163 (163)
Q Consensus 138 ~~~~C~C~~~~npd~~~~~C~~--C~-~w 163 (163)
...+|+|.++.+ ..||+||+ |. .|
T Consensus 35 e~~yCiC~~~~~--g~MI~CD~~dC~~~W 61 (91)
T 1weu_A 35 EPTYCLCHQVSY--GEMIGCDNPDCSIEW 61 (91)
T ss_dssp CCBCSTTCCBCC--SCCCCCSCSSCSCCC
T ss_pred CCcEEECCCCCC--CCEeEecCCCCCCCC
Confidence 458999999975 57999999 76 77
No 27
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=92.82 E-value=0.044 Score=36.03 Aligned_cols=18 Identities=28% Similarity=0.922 Sum_probs=16.0
Q ss_pred CCCCCCcceeeCCCCCCC
Q 031243 146 MPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 146 ~~~npd~~~~~C~~C~~w 163 (163)
.+..|+..-+||+.|.||
T Consensus 20 ~~~~~~~~WVQCD~C~KW 37 (100)
T 2l7p_A 20 DSYSTESAWVRCDDCFKW 37 (100)
T ss_dssp SCCSSSSEEEECTTTCCE
T ss_pred CCCCCCCeEEeeCCCCcc
Confidence 466788999999999999
No 28
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=92.81 E-value=0.02 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.934 Sum_probs=19.3
Q ss_pred CceEEeeCCCCCCCcceeeCCC--CC-CC
Q 031243 138 VAVYCKCEMPYNPDDLMVQCEG--CS-DW 163 (163)
Q Consensus 138 ~~~~C~C~~~~npd~~~~~C~~--C~-~w 163 (163)
...+|+|+++.+. .||+||+ |. .|
T Consensus 10 e~~yC~C~~~~~g--~MI~CD~c~C~~~W 36 (62)
T 2g6q_A 10 EPTYCLCNQVSYG--EMIGCDNEQCPIEW 36 (62)
T ss_dssp CCEETTTTEECCS--EEEECSCTTCSSCE
T ss_pred CCcEEECCCCCCC--CeeeeeCCCCCccc
Confidence 3589999999763 6999999 54 77
No 29
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=92.75 E-value=0.041 Score=35.50 Aligned_cols=25 Identities=32% Similarity=0.756 Sum_probs=20.4
Q ss_pred CCceEEeeCCCCCCCcceeeCCCCC---CC
Q 031243 137 RVAVYCKCEMPYNPDDLMVQCEGCS---DW 163 (163)
Q Consensus 137 ~~~~~C~C~~~~npd~~~~~C~~C~---~w 163 (163)
....+|+|.++.+- .||+||+|. .|
T Consensus 24 ~~~~yCiC~~~~~g--~MI~CD~c~C~~eW 51 (90)
T 2jmi_A 24 QEEVYCFCRNVSYG--PMVACDNPACPFEW 51 (90)
T ss_dssp CCSCCSTTTCCCSS--SEECCCSSSCSCSC
T ss_pred CCCcEEEeCCCCCC--CEEEecCCCCcccc
Confidence 45589999998763 699999977 78
No 30
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.57 E-value=0.051 Score=33.31 Aligned_cols=24 Identities=29% Similarity=0.729 Sum_probs=19.2
Q ss_pred CceEEeeCCCCCCCcceeeCCCCC---CC
Q 031243 138 VAVYCKCEMPYNPDDLMVQCEGCS---DW 163 (163)
Q Consensus 138 ~~~~C~C~~~~npd~~~~~C~~C~---~w 163 (163)
...+|+|.++. +..||+||+|. .|
T Consensus 5 ~~~yC~C~~~~--~g~MI~CD~cdC~~~W 31 (70)
T 1x4i_A 5 SSGYCICNQVS--YGEMVGCDNQDCPIEW 31 (70)
T ss_dssp CCCCSTTSCCC--CSSEECCSCTTCSCCC
T ss_pred CCeEEEcCCCC--CCCEeEeCCCCCCccC
Confidence 34799999985 34899999984 77
No 31
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=92.35 E-value=0.025 Score=33.62 Aligned_cols=24 Identities=33% Similarity=0.976 Sum_probs=19.4
Q ss_pred CceEEeeCCCCCCCcceeeCCC--CC-CC
Q 031243 138 VAVYCKCEMPYNPDDLMVQCEG--CS-DW 163 (163)
Q Consensus 138 ~~~~C~C~~~~npd~~~~~C~~--C~-~w 163 (163)
....|+|.++.+ ..||+||+ |. .|
T Consensus 9 e~~~C~C~~~~~--g~mi~CD~cdC~~~w 35 (60)
T 2vnf_A 9 EPTYCLCHQVSY--GEMIGCDNPDCSIEW 35 (60)
T ss_dssp CCEETTTTEECC--SEEEECSCTTCSSCE
T ss_pred CCCEEECCCcCC--CCEEEeCCCCCCCce
Confidence 358999999865 57999999 65 66
No 32
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=87.81 E-value=0.19 Score=42.23 Aligned_cols=17 Identities=24% Similarity=0.724 Sum_probs=15.3
Q ss_pred CCCCCcceeeCCCCCCC
Q 031243 147 PYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 147 ~~npd~~~~~C~~C~~w 163 (163)
+.|||..||+||.|+.|
T Consensus 51 ~~n~~~~mI~CD~C~~W 67 (528)
T 3pur_A 51 HKKNDFQWIGCDSCQTW 67 (528)
T ss_dssp TTTSTTSEEECTTTCCE
T ss_pred CCCcCCCEEECCCCCcC
Confidence 35799999999999998
No 33
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=85.96 E-value=0.4 Score=29.20 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=14.8
Q ss_pred CCCCCcceeeCC--CCCCC
Q 031243 147 PYNPDDLMVQCE--GCSDW 163 (163)
Q Consensus 147 ~~npd~~~~~C~--~C~~w 163 (163)
+..+....|||+ +|.||
T Consensus 11 ~~~~~~~WVQCd~p~C~KW 29 (69)
T 2e61_A 11 GFGQCLVWVQCSFPNCGKW 29 (69)
T ss_dssp SCCCCCCEEECSSTTTCCE
T ss_pred CCCCCCeEEEeCccccCcc
Confidence 456778999999 99999
No 34
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=80.86 E-value=1.8 Score=27.10 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=33.0
Q ss_pred ccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEe
Q 031243 24 KPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWY 64 (163)
Q Consensus 24 ~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wf 64 (163)
++||.+.|.+..-......|.|.++.-. +|. .-..|+|+
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~-PPY~VRw~ 45 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGS-PPYVVRWL 45 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSC-SCEEEEET
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCC-CCEEEEec
Confidence 6899999999876678899999999875 466 77899995
No 35
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=75.75 E-value=5.6 Score=24.49 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
..|..|+.|++.-.| ..+|.|.|.++...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 378999999998877 58999999999875
No 36
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=73.39 E-value=8.2 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.4
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.++.|+.|++.-.+ ..+|.|.|.++...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 56899999999887 68999999999765
No 37
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=71.81 E-value=7.9 Score=23.16 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.1
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.+++||.|+..=.+ ...|.|.|.+|...
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999988655 57999999999975
No 38
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.56 E-value=1.5 Score=24.46 Aligned_cols=19 Identities=26% Similarity=0.721 Sum_probs=13.2
Q ss_pred eCCCCCCCcceeeCCCCCCC
Q 031243 144 CEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 144 C~~~~npd~~~~~C~~C~~w 163 (163)
|.++.+ +..++.||+|.+|
T Consensus 6 C~~~~~-~~~ll~Cd~C~~~ 24 (51)
T 1f62_A 6 CRKKGE-DDKLILCDECNKA 24 (51)
T ss_dssp TCCSSC-CSCCEECTTTCCE
T ss_pred CCCCCC-CCCEEECCCCChh
Confidence 555543 3478999999875
No 39
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=70.80 E-value=6.7 Score=23.05 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=37.7
Q ss_pred EEEEEeecccccCCcccccCCCceeEEeccccccccccEeeecEEEec
Q 031243 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106 (163)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~ 106 (163)
+.|.=+-|..|+.-.-..-.+..||.+...++..++--|+|++.|+..
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 566667788888644333367899999999999999999999999875
No 40
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=70.50 E-value=3.7 Score=22.31 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.4
Q ss_pred CCCCCCcceeeCCCCCC
Q 031243 146 MPYNPDDLMVQCEGCSD 162 (163)
Q Consensus 146 ~~~npd~~~~~C~~C~~ 162 (163)
.|..++.+|.-|.+|++
T Consensus 9 ~ple~~~~YRvC~~Cgk 25 (44)
T 2lo3_A 9 DPLDKPIQYRVCEKCGK 25 (44)
T ss_dssp CCCCCCCCEEECTTTCC
T ss_pred cccCccccchhhcccCC
Confidence 36678889999999986
No 41
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=67.83 E-value=3.6 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=32.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC-----CCCeEEEEEEEeec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-----RGANVKVHVRWYYR 66 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~-----~g~~~~v~v~Wfyr 66 (163)
..|.+||.|..+-.+ -+.|-|+|...-... .|....+.|+||-.
T Consensus 21 ~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp CCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 489999999999887 589999998764321 12225688888764
No 42
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=64.46 E-value=14 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (163)
.|.+|+.|++..+ ...+-|.|+++....
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~ 50 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRK 50 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999963 468999999999754
No 43
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=63.64 E-value=7.3 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
..|++||.|+-.=++ +..+|-|+|.+|-.
T Consensus 8 ~~~~vgd~VmaRW~G-d~~yYparI~Si~s 36 (66)
T 2l8d_A 8 RKYADGEVVMGRWPG-SVLYYEVQVTSYDD 36 (66)
T ss_dssp SSSCSSCEEEEECTT-SSCEEEEEEEEEET
T ss_pred eEeecCCEEEEEcCC-CccceEEEEEEecc
Confidence 378999999998855 47899999999983
No 44
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=63.49 E-value=5.9 Score=27.78 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=32.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCC---CCeEEEEEEEeecc
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDAR---GANVKVHVRWYYRP 67 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~---g~~~~v~v~Wfyrp 67 (163)
..+.+||.|..+-.+ -+.|-|+|........ .. -.+.|+||-..
T Consensus 15 ~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~-~~~~V~FFG~~ 61 (154)
T 3llr_A 15 RGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAE-GTRWVMWFGDG 61 (154)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCT-TEEEEEETTTC
T ss_pred CCCccCCEEEEecCC--CCCCCEEEecccccccccCCC-CEEEEEEeCCC
Confidence 489999999999877 6899999998763321 11 36788887654
No 45
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=61.61 E-value=9.4 Score=23.24 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=36.7
Q ss_pred EEEEEeecccccCCcccccCCCceeEEeccccccccccEeeecEEEecc
Q 031243 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFK 107 (163)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~ 107 (163)
|.|.=+-|..|+.-.-..-.+..||.+...++..++--|+|++.|+...
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t~~ 69 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTAN 69 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEETT
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEecc
Confidence 4455556666664333223578999999999999999999999998854
No 46
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.87 E-value=4.1 Score=24.64 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=16.2
Q ss_pred EEeeCCCC-CCCcceeeCCCCCCC
Q 031243 141 YCKCEMPY-NPDDLMVQCEGCSDW 163 (163)
Q Consensus 141 ~C~C~~~~-npd~~~~~C~~C~~w 163 (163)
=.+|.+.. ..+..++.||+|..|
T Consensus 19 C~vC~~~~s~~~~~ll~CD~C~~~ 42 (71)
T 2ku3_A 19 CSICMDGESQNSNVILFCDMCNLA 42 (71)
T ss_dssp CSSSCCCCCCSSSCEEECSSSCCE
T ss_pred CCCCCCCCCCCCCCEEECCCCCCc
Confidence 34566664 355699999999864
No 47
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=60.66 E-value=3.8 Score=26.96 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=31.0
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEEeEEEecC--CCCeEEEEEEEee
Q 031243 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWYY 65 (163)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~--~g~~~~v~v~Wfy 65 (163)
+..+++||.|..+-.+ -+.|-|+|.++-+.. ... ..+.|+||-
T Consensus 17 ~~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~-~~~~V~FFG 61 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTA-NKYQVFFFG 61 (110)
T ss_dssp SSSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCS-SCEEEEETT
T ss_pred cCCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCC-CEEEEEEec
Confidence 3488999999999877 579999998754321 112 457888873
No 48
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=60.33 E-value=11 Score=22.64 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=37.3
Q ss_pred EEEEEeecccccCCcccccCCCceeEEeccccccccccEeeecEEEecc
Q 031243 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFK 107 (163)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~~~~~~I~gkc~V~~~~ 107 (163)
+.|.=+-|..||.-.-..-.+..||.+.-..+..++--|+||+.|+...
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~~ 65 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRH 65 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEETT
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEeec
Confidence 5555667777776443333578999999888999999999999998753
No 49
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=59.95 E-value=11 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEE
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~ 49 (163)
.|.+|+.|++.-.+ ..+|.|.|.+..
T Consensus 15 ~~~~geDVL~rw~D--G~fYLGtIVd~~ 40 (69)
T 2xk0_A 15 TYALQEDVFIKCND--GRFYLGTIIDQT 40 (69)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEC
T ss_pred ccccCCeEEEEecC--CCEEEEEEEecC
Confidence 78999999999766 689999996543
No 50
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=58.56 E-value=6.6 Score=24.98 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=29.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC--CCCeEEEEEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWY 64 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~--~g~~~~v~v~Wf 64 (163)
..+++||.|..+-.+ -+.|-|+|.++-... ... ..+.|+||
T Consensus 4 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~k~~~-~~~~V~FF 46 (94)
T 3qby_A 4 HAFKPGDLVFAKMKG--YPHWPARIDDIADGAVKPPP-NKYPIFFF 46 (94)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEECCCCTTSBCCCT-TCEEEEET
T ss_pred CcCccCCEEEEecCC--CCCCCEEEeecccccccCCC-CEEEEEEE
Confidence 368999999999877 689999999864221 111 34677776
No 51
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=56.82 E-value=13 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=24.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
..|++||.|+-.=.+ +..+|-|+|.+|-.
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSits 39 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHDS 39 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEecc
Confidence 478999999998775 47899999999983
No 52
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=55.76 E-value=10 Score=24.77 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec---C---CCCeEEEEEEEee
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD---A---RGANVKVHVRWYY 65 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~---~---~g~~~~v~v~Wfy 65 (163)
..+++||.|..+-.+ -+.|-|+|..-..- . ......+.|++|-
T Consensus 4 ~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 4 DRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp CCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 478999999999887 58999999764321 1 1112678888775
No 53
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=55.51 E-value=4.8 Score=26.29 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=31.7
Q ss_pred cCCcEEccCCEEEEecCCCCCCCeEEEEeEEEecC------CCCeEEEEEEEee
Q 031243 18 SISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA------RGANVKVHVRWYY 65 (163)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~------~g~~~~v~v~Wfy 65 (163)
|.|..+++||.|..+-.+ -+.|-|+|.+...-. ......+.|+||-
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg 55 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFG 55 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCChhhCCHHHhhccCCCCcEEEEEec
Confidence 345688999999999887 579999998763211 1011347788775
No 54
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=53.56 E-value=8.9 Score=26.58 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=29.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCC--CCeEEEEEEEeec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDAR--GANVKVHVRWYYR 66 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~--g~~~~v~v~Wfyr 66 (163)
..|++||.|..+-.+ -+.|-|+|...-.... .. ..+.|+||-.
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~~~~~-~~~~V~FfG~ 65 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPDGAVKPPT-NKLPIFFFGT 65 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC---CCCCT-TCEEEEETTT
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchhhccCCCC-CEEEEEecCC
Confidence 478999999999887 5799999987643211 11 3477777643
No 55
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=51.72 E-value=7.6 Score=26.94 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.4
Q ss_pred CcEEccCCEEEEecCCCCCCCeEEEEeEEEecCCC--CeEEEEEEEeec
Q 031243 20 SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARG--ANVKVHVRWYYR 66 (163)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g--~~~~v~v~Wfyr 66 (163)
+..+++||.|..+-.+ -+.|-|+|.+....... ....+.|+||-.
T Consensus 9 ~~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~ 55 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFGD 55 (147)
T ss_dssp SSSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETTT
T ss_pred CccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEecC
Confidence 3589999999999877 57999999876553211 013678888753
No 56
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.00 E-value=37 Score=20.23 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
-.+.+|+.|+..=.| ..+|.|.|.++...
T Consensus 8 ~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred cccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 478999999998766 58999999999864
No 57
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=48.28 E-value=22 Score=20.07 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=32.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecccc
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEE 69 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e 69 (163)
.+.+||.|.|..+. -.-+.|.|.++... .+. ..+.+..|-|...
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~~-k~~-v~V~v~~~Gr~t~ 47 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINPE-RGK-VKVMVTIFGRETP 47 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEETT-TTE-EEEEEESSSSEEE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcCC-CCE-EEEEEEeCCCEEE
Confidence 56899999999887 45779999999753 233 6777777766543
No 58
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=48.23 E-value=5.5 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.649 Sum_probs=12.7
Q ss_pred CCCCCcceeeCCCCCCC
Q 031243 147 PYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 147 ~~npd~~~~~C~~C~~w 163 (163)
.++--.++++|++|+.|
T Consensus 31 aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 31 AYEKGTVLISCPHCKVR 47 (100)
T ss_dssp HHHTSEEEEECTTTCCE
T ss_pred HhhCCEEEEEcCCCccc
Confidence 44455589999999864
No 59
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=48.11 E-value=8.1 Score=22.55 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=15.1
Q ss_pred eeCCCC-CCCcceeeCCCCCCC
Q 031243 143 KCEMPY-NPDDLMVQCEGCSDW 163 (163)
Q Consensus 143 ~C~~~~-npd~~~~~C~~C~~w 163 (163)
+|.... ..+..+++|++|..+
T Consensus 11 vC~~~~~~~~~~ll~Cd~C~~~ 32 (66)
T 2yt5_A 11 ICQEEYSEAPNEMVICDKCGQG 32 (66)
T ss_dssp SSCCCCCBTTBCEEECSSSCCE
T ss_pred CCCCCCCCCCCCEEECCCCChH
Confidence 566654 345799999999764
No 60
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.82 E-value=6.3 Score=24.81 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=16.7
Q ss_pred EEeeCCCC-CCCcceeeCCCCCCC
Q 031243 141 YCKCEMPY-NPDDLMVQCEGCSDW 163 (163)
Q Consensus 141 ~C~C~~~~-npd~~~~~C~~C~~w 163 (163)
=++|.... ..+..++.||.|..|
T Consensus 28 C~vC~~~~s~~~~~ll~CD~C~~~ 51 (88)
T 2l43_A 28 CSICMDGESQNSNVILFCDMCNLA 51 (88)
T ss_dssp CSSCCSSSSCSEEEEEECSSSCCC
T ss_pred CCcCCCCCCCCCCCEEECCCCCch
Confidence 34677764 355699999999875
No 61
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.58 E-value=14 Score=21.32 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=31.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeecc
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp 67 (163)
..+.+||.|.|.... -.-..|.|+++..+ . ..+.+.-|-|+
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~e---~-v~V~v~~fg~~ 46 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDGN---K-ITIMPKHEDLK 46 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBTT---E-EEEEECCSSCC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeCC---E-EEEEEEecCCC
Confidence 468999999999888 56889999998632 3 77777666553
No 62
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=46.18 E-value=24 Score=21.08 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEee
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYY 65 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfy 65 (163)
.+++||-|+..=.+ ..+|-|+|.+|..+ ....|.++-
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~-----~~Y~V~F~d 42 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD-----GTYTVKFYD 42 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT-----SEEEEEETT
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC-----CeEEEEEeC
Confidence 67999999999744 68999999999754 236676644
No 63
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=46.14 E-value=38 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.4
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (163)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999953 468999999999754
No 64
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=41.07 E-value=29 Score=22.90 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.3
Q ss_pred cCCcEEccCCEEEEecCCC
Q 031243 18 SISKTIKPGDCVLMRPSEP 36 (163)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~ 36 (163)
|....++.||++++.+...
T Consensus 86 g~~~~l~~GD~~~ip~g~~ 104 (123)
T 3bcw_A 86 GTVHAVKAGDAFIMPEGYT 104 (123)
T ss_dssp CCEEEEETTCEEEECTTCC
T ss_pred CeEEEECCCCEEEECCCCe
Confidence 4335788999999988763
No 65
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.32 E-value=11 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=14.2
Q ss_pred eCCCCCCCcceeeCCCCCC
Q 031243 144 CEMPYNPDDLMVQCEGCSD 162 (163)
Q Consensus 144 C~~~~npd~~~~~C~~C~~ 162 (163)
|.++..++..+.+|+.|++
T Consensus 8 C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 8 CHHALERNGDTAHCETCAK 26 (81)
T ss_dssp SCSCCEECSSEEECTTTCC
T ss_pred CCCccccCCCceECccccc
Confidence 6666667777888888875
No 66
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.18 E-value=22 Score=20.86 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
-.+.+|+.|+..=.+ ..+|.|.|.++...
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 478999999998666 57999999998754
No 67
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=38.61 E-value=61 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.6
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (163)
..|.+|+.|++.-.+ ...|-|+|+++....
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~~ 40 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVND 40 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEET
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEecc
Confidence 368999999999764 468999999998753
No 68
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=37.40 E-value=1.2e+02 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.5
Q ss_pred EEccCCEEEEecCCC--CCCCeEEEEeEEEecCCCCeEEEEEEEee
Q 031243 22 TIKPGDCVLMRPSEP--SKPSYVAKIERIESDARGANVKVHVRWYY 65 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~--~~~~~i~~I~~i~~~~~g~~~~v~v~Wfy 65 (163)
.+++||.|.-..-+. +....||+|.++..+.++....+.|.=+.
T Consensus 169 ~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~P~a 214 (255)
T 2j5u_A 169 KFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGA 214 (255)
T ss_dssp CCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEEESS
T ss_pred CCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEEECC
Confidence 789999988766442 34578999999999876653555555543
No 69
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=36.10 E-value=43 Score=19.34 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=23.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
..+++||.+...=.+ +...|=|+|+++..
T Consensus 7 ~~~~vGd~c~A~~s~-Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-DGQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTT-TSSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 468999999988654 25788999999985
No 70
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=36.01 E-value=30 Score=22.08 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=16.7
Q ss_pred EEEccCC--cEEccCCEEEEecCC
Q 031243 14 YTVKSIS--KTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~--~~~~vGD~V~v~~~~ 35 (163)
+.+++.. ..++.||++++.+..
T Consensus 66 l~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 66 IECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EEETTCSSCEEECTTEEEEECTTC
T ss_pred EEECCEEEEEEECCCCEEEECCCC
Confidence 4556655 678999999998766
No 71
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.90 E-value=21 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.627 Sum_probs=14.5
Q ss_pred eeCCCCC-CCcceeeCCCCCC
Q 031243 143 KCEMPYN-PDDLMVQCEGCSD 162 (163)
Q Consensus 143 ~C~~~~n-pd~~~~~C~~C~~ 162 (163)
+|..... ++..+++|+.|..
T Consensus 21 vC~~~~~~~~~~ll~CD~C~~ 41 (88)
T 1wev_A 21 VCRQMTVASGNQLVECQECHN 41 (88)
T ss_dssp SSCCCCCCTTCCEEECSSSCC
T ss_pred CCCCCCCCCCCceEECCCCCC
Confidence 4666654 3578999999975
No 72
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=34.77 E-value=39 Score=21.31 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=15.8
Q ss_pred EEEc-cCCcEEccCCEEEEecCC
Q 031243 14 YTVK-SISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~-g~~~~~~vGD~V~v~~~~ 35 (163)
+.++ |....++.||.+++.+..
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCCEEEECCCC
Confidence 3455 555677889999988766
No 73
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=34.67 E-value=60 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
..|.+|+.|++.-+ ...|-|+|+++...
T Consensus 21 ~~f~vGekVl~~~~---~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 21 PKFQEGERVLCFHG---PLLYEAKCVKVAIK 48 (102)
T ss_dssp CSCCTTCEEEEESS---SSEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEC---CEEEEEEEEEEEEc
Confidence 36899999999873 46899999999875
No 74
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.40 E-value=10 Score=24.01 Aligned_cols=22 Identities=36% Similarity=0.891 Sum_probs=15.8
Q ss_pred EE-eeCCCCCCCcceeeCCCCCCC
Q 031243 141 YC-KCEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 141 ~C-~C~~~~npd~~~~~C~~C~~w 163 (163)
.| +|.+..+ +..++.||.|..|
T Consensus 18 ~C~vC~~~~~-~~~ll~CD~C~~~ 40 (92)
T 2e6r_A 18 ICQVCSRGDE-DDKLLFCDGCDDN 40 (92)
T ss_dssp CCSSSCCSGG-GGGCEECTTTCCE
T ss_pred CCccCCCcCC-CCCEEEcCCCCch
Confidence 45 6776643 3589999999875
No 75
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=33.59 E-value=31 Score=22.43 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=16.5
Q ss_pred EEEccCCcEEccCCEEEEecCC
Q 031243 14 YTVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (163)
++++|....++.||.|++.+..
T Consensus 72 ~~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 72 VSTDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 3455655678999999998876
No 76
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=32.70 E-value=50 Score=22.03 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.++.||.|.|.++. +.--.|+|.++...
T Consensus 42 ~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k 69 (120)
T 1vq8_T 42 RVNAGDTVEVLRGD--FAGEEGEVINVDLD 69 (120)
T ss_dssp ECCTTCEEEECSST--TTTCEEEEEEEETT
T ss_pred cccCCCEEEEEecC--CCCCEEEEEEEECC
Confidence 78999999999987 45579999999865
No 77
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=31.24 E-value=24 Score=21.52 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred EEccCCEEEEecCC-CCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSE-PSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~-~~~~~~i~~I~~i~~~ 51 (163)
.+.+|+.|++.-.+ .....+-|+|+++...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 67899999998763 1236789999998865
No 78
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=30.52 E-value=55 Score=22.26 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=33.0
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeeccc
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPE 68 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~ 68 (163)
..+.+||.|-|..+. -.-..|.|.++..+. +. ..+.+.-|-|+.
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~k-~~-v~V~v~~~gr~t 133 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDESK-DE-VVVQFIDAIVPI 133 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETTT-TE-EEEEESSCSSCC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCCC-CE-EEEEEEecceeE
Confidence 367899999999876 467799999998653 33 667777776643
No 79
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34 E-value=51 Score=20.62 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=24.2
Q ss_pred cEEccCCEEEEecC--CCCCCCeEEEEeEEEecC
Q 031243 21 KTIKPGDCVLMRPS--EPSKPSYVAKIERIESDA 52 (163)
Q Consensus 21 ~~~~vGD~V~v~~~--~~~~~~~i~~I~~i~~~~ 52 (163)
..|.+|+-|++.-. ..+...+-|+|+++....
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~ 41 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS 41 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSS
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC
Confidence 37899999999863 112468899999998753
No 80
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.01 E-value=64 Score=21.52 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=23.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (163)
.++.||-|.|.++. +.--.|.|.++....
T Consensus 45 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 45 PVRVGDKVRIMRGD--YKGHEGKVVEVDLKR 73 (121)
T ss_dssp ECCSSSEEEECSSS--CSSEEEEEEEEETTT
T ss_pred ccccCCEEEEeecC--CCCcEeEEEEEEecC
Confidence 67899999999987 455689999998653
No 81
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=29.96 E-value=21 Score=17.12 Aligned_cols=10 Identities=40% Similarity=0.913 Sum_probs=7.9
Q ss_pred ceeeCCCCCC
Q 031243 153 LMVQCEGCSD 162 (163)
Q Consensus 153 ~~~~C~~C~~ 162 (163)
..+||+.|+.
T Consensus 5 f~vqcpvcqq 14 (29)
T 3vhs_A 5 FQVQCPVCQQ 14 (29)
T ss_dssp CEEECTTTCC
T ss_pred eeeeChHHHH
Confidence 5689999974
No 82
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=29.91 E-value=34 Score=23.63 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=16.7
Q ss_pred EEEccCCcEEccCCEEEEecCC
Q 031243 14 YTVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (163)
++++|....++.||.+++.+..
T Consensus 97 l~i~g~~~~l~~GD~i~iP~G~ 118 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPKGS 118 (151)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 3556665677899999998876
No 83
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=29.65 E-value=44 Score=22.02 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=16.3
Q ss_pred EccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 23 IKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
+.+||.|.|...+-+ .--|.|..+..
T Consensus 71 i~~GD~V~ve~~~~~--~~kG~I~~~~~ 96 (117)
T 2oqk_A 71 VNPGDIVLVSLRDFQ--DSKGDIILKYT 96 (117)
T ss_dssp CCTTCEEEEEECTTC--TTEEEEEEECC
T ss_pred CCCCCEEEEEEEcCC--CCeEEEEEEec
Confidence 448888888776421 23577776665
No 84
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=29.59 E-value=26 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.++.||.|.|.++. +.--.|+|.++...
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 42 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPR 42 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETT
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECC
Confidence 46899999999987 45668999999865
No 85
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=29.10 E-value=65 Score=21.68 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEccCCEEEEecCCCC-CCC--eEEEEeEEE
Q 031243 22 TIKPGDCVLMRPSEPS-KPS--YVAKIERIE 49 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~-~~~--~i~~I~~i~ 49 (163)
.+.+||-|.|.+...+ .+. |.|+|.++.
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 6788999998886422 233 689998886
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=29.01 E-value=22 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=13.8
Q ss_pred eCCCCCCCcceeeCCCCCCC
Q 031243 144 CEMPYNPDDLMVQCEGCSDW 163 (163)
Q Consensus 144 C~~~~npd~~~~~C~~C~~w 163 (163)
|..+...+..+++|+.|.++
T Consensus 67 C~~~~~~~~~ll~Cd~C~~~ 86 (112)
T 3v43_A 67 CRDQGKNADNMLFCDSCDRG 86 (112)
T ss_dssp TCCCCCTTCCCEECTTTCCE
T ss_pred ccCcCCCccceEEcCCCCCe
Confidence 44444556689999999763
No 87
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=28.99 E-value=34 Score=22.82 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=16.7
Q ss_pred EEEccCCcEEccCCEEEEecCC
Q 031243 14 YTVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (163)
++++|....++.||.+++.+..
T Consensus 88 l~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 88 VRHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 4556655678899999998876
No 88
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=28.50 E-value=60 Score=21.27 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=23.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (163)
.++.||.|.|.+.. +.--.|.|.++....
T Consensus 6 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 6 HVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp SCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred ccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 57899999999987 345589999998753
No 89
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.13 E-value=61 Score=19.52 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=23.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
..+++||.|+-.=.| ...|-|+|+++..
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 378999999998764 6789999999964
No 90
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=27.63 E-value=67 Score=20.05 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=28.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWY 64 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wf 64 (163)
..+++||-|+-.=.+ ..+|-|+|.+|-.+ + ...|.++
T Consensus 20 ~~f~vGd~VlArW~D--~~yYPAkI~sV~~~--~---~YtV~F~ 56 (85)
T 3qii_A 20 SEFQINEQVLACWSD--CRFYPAKVTAVNKD--G---TYTVKFY 56 (85)
T ss_dssp -CCCTTCEEEEECTT--SCEEEEEEEEECTT--S---EEEEEET
T ss_pred cccccCCEEEEEeCC--CCEeeEEEEEECCC--C---eEEEEEe
Confidence 488999999999844 67999999999754 2 3667664
No 91
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=27.43 E-value=65 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
..+++||.|+.+..+ ..+|=|.|.++..
T Consensus 4 ~~v~vGq~V~akh~n--gryy~~~V~~~~~ 31 (118)
T 2qqr_A 4 QSITAGQKVISKHKN--GRFYQCEVVRLTT 31 (118)
T ss_dssp SCCCTTCEEEEECTT--SSEEEEEEEEEEE
T ss_pred ceeccCCEEEEECCC--CCEEeEEEEEEee
Confidence 367999999988776 6788999998854
No 92
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=27.08 E-value=21 Score=22.29 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=10.1
Q ss_pred cceeeCCCCCCC
Q 031243 152 DLMVQCEGCSDW 163 (163)
Q Consensus 152 ~~~~~C~~C~~w 163 (163)
..+++|++|.-|
T Consensus 43 e~iv~C~sCSL~ 54 (83)
T 1yop_A 43 EKVAVCPSCSLM 54 (83)
T ss_dssp CCEEECSSSCCE
T ss_pred CEEEECCCCccE
Confidence 368999999876
No 93
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=26.91 E-value=21 Score=22.62 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=9.6
Q ss_pred ceeeCCCCCCC
Q 031243 153 LMVQCEGCSDW 163 (163)
Q Consensus 153 ~~~~C~~C~~w 163 (163)
.+++|++|.-|
T Consensus 44 ~iv~C~sCSL~ 54 (89)
T 2jr7_A 44 DVATCPSCSLI 54 (89)
T ss_dssp CEEECTTTCCE
T ss_pred EEEECCCCccE
Confidence 58999999876
No 94
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=26.60 E-value=49 Score=20.62 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=16.0
Q ss_pred EEEccCCcEEccCCEEEEecCC
Q 031243 14 YTVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (163)
+.++|....++.||.+++.+..
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~ 92 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHK 92 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEecCCCEEEECCCC
Confidence 3455555677889999998876
No 95
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=26.10 E-value=85 Score=17.59 Aligned_cols=28 Identities=32% Similarity=0.173 Sum_probs=21.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
.+++||.+...=.+ +...|=|+|+++..
T Consensus 3 ~~~~G~~c~A~~s~-Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE-DGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTT-TSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 57899998888653 25678999999954
No 96
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=25.69 E-value=1.3e+02 Score=19.24 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=27.8
Q ss_pred EccCCcEEccCCEEEEecCCC--CCCCeEEEEeEEEecC
Q 031243 16 VKSISKTIKPGDCVLMRPSEP--SKPSYVAKIERIESDA 52 (163)
Q Consensus 16 ~~g~~~~~~vGD~V~v~~~~~--~~~~~i~~I~~i~~~~ 52 (163)
+.|....|.+|+-|++.-+++ ....|=|+|.++....
T Consensus 13 ~~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 13 LRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred hccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 345556899999999988631 1457899999998753
No 97
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=25.00 E-value=1.2e+02 Score=21.21 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=31.4
Q ss_pred cEEccCCEEEEecCCC--CCCCeEEEEeEEEecCCCCeEEEEEEEeec
Q 031243 21 KTIKPGDCVLMRPSEP--SKPSYVAKIERIESDARGANVKVHVRWYYR 66 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~--~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyr 66 (163)
..++.||.|.-..-+. +....||+|.++..+.++....+.+.=+..
T Consensus 107 ~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~~~~~~~~~i~v~p~ad 154 (172)
T 2qf4_A 107 SDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDYLTREVTVKLSAD 154 (172)
T ss_dssp CCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCSSCCEEEEEESCC
T ss_pred CCCCCCCEEEECCCCCcCCCCCEEEEEEEEecCCCCcEEEEEEEECCC
Confidence 3689999988776542 234579999999887665435566655433
No 98
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=24.60 E-value=68 Score=19.20 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=22.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
+.+++||.|-|.... -.--.|.|.++..+
T Consensus 16 K~F~~GDHVkVi~G~--~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGR--FEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSST--TTTCEEEEEEECSS
T ss_pred eeccCCCeEEEeccE--EcCceEEEEEEeCC
Confidence 478999999999976 34558888887643
No 99
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.42 E-value=67 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=23.4
Q ss_pred EEccCCEEEEecCCCCCCCeE-EEEeEEEecC
Q 031243 22 TIKPGDCVLMRPSEPSKPSYV-AKIERIESDA 52 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i-~~I~~i~~~~ 52 (163)
.|+.||.|.|.++. +.--. |+|..+....
T Consensus 48 ~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 48 PIRKDDEVQVVRGH--YKGQQIGKVVQVYRKK 77 (145)
T ss_dssp BCCTTCEEEECSST--TTTCCSEEEEEEETTT
T ss_pred ccCCCCEEEEeecC--CCCcceeEEEEEECCC
Confidence 68999999999987 34456 9999998653
No 100
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=29.59 E-value=17 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.+++||+|.-...+ ||+|+.|.+.
T Consensus 6 ~f~~GD~VVy~~hG------vg~i~gIe~~ 29 (70)
T 2lqk_A 6 EFRPGDKVVLPPYG------VGVVAGIAQR 29 (70)
Confidence 68999999877777 8999988764
No 101
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=23.56 E-value=63 Score=19.24 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=12.9
Q ss_pred EccCCcEEccCCEEEEecCC
Q 031243 16 VKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 16 ~~g~~~~~~vGD~V~v~~~~ 35 (163)
++|....+..||.+++.+..
T Consensus 64 ~~~~~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 64 VGEEEALLAPGMAAFAPAGA 83 (105)
T ss_dssp ETTEEEEECTTCEEEECTTS
T ss_pred ECCEEEEeCCCCEEEECCCC
Confidence 34444567788888877655
No 102
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=23.31 E-value=53 Score=23.06 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=13.0
Q ss_pred EEEccCCcEEccCCEEEEecCC
Q 031243 14 YTVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (163)
++++|...++..||++++.+..
T Consensus 123 vtl~g~~~~L~~Gds~~iP~g~ 144 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPAFN 144 (166)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 3445544455677777776654
No 103
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=23.20 E-value=82 Score=20.28 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=22.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.++.||.|.|.+.. +.--.|.|.++...
T Consensus 3 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 46889999999987 34558999999865
No 104
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.88 E-value=26 Score=19.95 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=9.4
Q ss_pred cceeeCCCCCCC
Q 031243 152 DLMVQCEGCSDW 163 (163)
Q Consensus 152 ~~~~~C~~C~~w 163 (163)
..++.|+.|..|
T Consensus 15 g~ll~Cd~C~~~ 26 (60)
T 2puy_A 15 GQLLMCDTCSRV 26 (60)
T ss_dssp SSCEECSSSSCE
T ss_pred CcEEEcCCCCcC
Confidence 378899999765
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=22.58 E-value=26 Score=21.36 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.5
Q ss_pred cceeeCCCCCCC
Q 031243 152 DLMVQCEGCSDW 163 (163)
Q Consensus 152 ~~~~~C~~C~~w 163 (163)
..+++|+.|.++
T Consensus 39 ~~ll~CD~C~~~ 50 (77)
T 3shb_A 39 DKQLMCDECDMA 50 (77)
T ss_dssp GGEEECTTTCCE
T ss_pred cceeEeCCCCCc
Confidence 478999999763
No 106
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=22.36 E-value=29 Score=21.64 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=9.6
Q ss_pred ceeeCCCCCCC
Q 031243 153 LMVQCEGCSDW 163 (163)
Q Consensus 153 ~~~~C~~C~~w 163 (163)
.+++|++|..|
T Consensus 51 ~iv~C~sCSL~ 61 (83)
T 1wge_A 51 DVATCPSCSLI 61 (83)
T ss_dssp CEEECTTTCCE
T ss_pred EEEECCCCceE
Confidence 58999999876
No 107
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=22.09 E-value=1e+02 Score=19.13 Aligned_cols=28 Identities=32% Similarity=0.173 Sum_probs=23.1
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEe
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (163)
.+++||.+...=.. +...|=|+|.++..
T Consensus 10 ~~kvGd~C~A~ys~-Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 10 QWKVGDKCSAIWSE-DGCIYPATIASIDF 37 (88)
T ss_dssp CCCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred CCCCCCEEEEEECC-CCCEEEEEEEEecC
Confidence 67999999998764 25788999999965
No 108
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=21.87 E-value=85 Score=19.53 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.7
Q ss_pred EEEccCCc-EEccCCEEEEecCC
Q 031243 14 YTVKSISK-TIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~-~~~vGD~V~v~~~~ 35 (163)
+.+++... .++.||.+++.+..
T Consensus 60 ~~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 60 LTLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp EEETTSCCEEEETTCEEEECTTC
T ss_pred EEECCEEEEEeCCCCEEEECCCC
Confidence 34555556 77888888888765
No 109
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=21.67 E-value=64 Score=19.83 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=15.7
Q ss_pred EEEcc-CCcEEccCCEEEEecCC
Q 031243 14 YTVKS-ISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g-~~~~~~vGD~V~v~~~~ 35 (163)
+.++| ....++.||.+++.+..
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~~~ 83 (107)
T 2i45_A 61 VDFADGGSMTIREGEMAVVPKSV 83 (107)
T ss_dssp EEETTSCEEEECTTEEEEECTTC
T ss_pred EEECCCcEEEECCCCEEEECCCC
Confidence 34555 54677888888888776
No 110
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=21.54 E-value=1.3e+02 Score=17.65 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=20.0
Q ss_pred CCeEEEEeEEEecCCCCeEEEEEEE
Q 031243 39 PSYVAKIERIESDARGANVKVHVRW 63 (163)
Q Consensus 39 ~~~i~~I~~i~~~~~g~~~~v~v~W 63 (163)
+..|-+|..+..+.+|+ .+|-++|
T Consensus 10 E~~Ve~I~g~~~~~~g~-L~flikw 33 (68)
T 1e0b_A 10 EDLVSSIDTIERKDDGT-LEIYLTW 33 (68)
T ss_dssp TTTEEEEEEEEECTTSC-EEEEEEE
T ss_pred hhheeEEEEEEECCCCE-EEEEEEE
Confidence 35688999998866787 9999999
No 111
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.35 E-value=32 Score=19.23 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=9.4
Q ss_pred cceeeCCCCCCC
Q 031243 152 DLMVQCEGCSDW 163 (163)
Q Consensus 152 ~~~~~C~~C~~w 163 (163)
..++.|+.|.+|
T Consensus 19 g~ll~Cd~C~~~ 30 (56)
T 2yql_A 19 GQLLMCDTCSRV 30 (56)
T ss_dssp SCCEECSSSSCE
T ss_pred CeEEEcCCCCcc
Confidence 378899999764
No 112
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=21.20 E-value=72 Score=19.72 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=14.2
Q ss_pred EEccCCcEEccCCEEEEecCC
Q 031243 15 TVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 15 ~~~g~~~~~~vGD~V~v~~~~ 35 (163)
.++|....+..||.+++.+..
T Consensus 68 ~~~~~~~~l~~Gd~~~ip~~~ 88 (116)
T 2pfw_A 68 NVDGVIKVLTAGDSFFVPPHV 88 (116)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECcCC
Confidence 344444567888888887765
No 113
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=21.20 E-value=1.5e+02 Score=18.00 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=20.4
Q ss_pred CCCeEEEEeEEEecCCCCeEEEEEEEee
Q 031243 38 KPSYVAKIERIESDARGANVKVHVRWYY 65 (163)
Q Consensus 38 ~~~~i~~I~~i~~~~~g~~~~v~v~Wfy 65 (163)
+.+-|-+|++-....+|. ....|.|--
T Consensus 22 e~yeVE~Ild~R~~~~g~-~~YlVKWkG 48 (81)
T 4hae_A 22 DLYEVERIVDKRKNKKGK-WEYLIRWKG 48 (81)
T ss_dssp CEEEEEEEEEEEECTTSC-EEEEEEETT
T ss_pred CEEEEEEEEEeEECCCCe-EEEEEEECC
Confidence 445678888877766787 889999943
No 114
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=21.13 E-value=43 Score=23.38 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=15.1
Q ss_pred EEccCCcEEccCCEEEEecCC
Q 031243 15 TVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 15 ~~~g~~~~~~vGD~V~v~~~~ 35 (163)
.++|....++.||.|+|.+..
T Consensus 82 ~idge~~~l~~GD~v~IPpg~ 102 (157)
T 4h7l_A 82 ELNGQSYPLTKLLAISIPPLV 102 (157)
T ss_dssp EETTEEEECCTTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 445544566889999998876
No 115
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=21.13 E-value=57 Score=20.64 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=15.2
Q ss_pred EEEccCCcEEccCCEEEEecCC
Q 031243 14 YTVKSISKTIKPGDCVLMRPSE 35 (163)
Q Consensus 14 ~~~~g~~~~~~vGD~V~v~~~~ 35 (163)
+.++|....++.||.+++.+..
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~ 90 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGA 90 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 3455554567888888888765
No 116
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=20.82 E-value=1.1e+02 Score=20.61 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=23.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecC
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (163)
.++.||-|.|.++.. .--.|.|..+....
T Consensus 49 ~IkkgD~V~Vi~Gkd--KGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 49 PIRRDDEVLVVRGSK--KGQEGKISSVYRLK 77 (127)
T ss_dssp ECCTTCEEEECSSTT--TTCEEEEEEEEGGG
T ss_pred cccCCCEEEEeecCC--CCccceEEEEECCC
Confidence 678999999999873 33479999998653
No 117
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=20.71 E-value=47 Score=19.80 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=7.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEec
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (163)
.+++||.|.=...+ ||+|..|..-
T Consensus 2 ~l~~GD~VVh~~hG------iG~~~gi~~~ 25 (71)
T 3mlq_E 2 PHMPGDYLIHPEHG------VGQYLGLETR 25 (71)
T ss_dssp --------------------CEEEEEEEEE
T ss_pred cCCCCCEEEECCCe------eEEEeEEEEE
Confidence 57899999776666 8888888664
No 118
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=20.55 E-value=1.5e+02 Score=17.70 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=21.3
Q ss_pred CCeEEEEeEEEecCCCCeEEEEEEEeeccc
Q 031243 39 PSYVAKIERIESDARGANVKVHVRWYYRPE 68 (163)
Q Consensus 39 ~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~ 68 (163)
.+-|-+|..-....+|. ....|.|--.|.
T Consensus 21 ~yeVE~Il~~r~~~~g~-~~YlVkWkGy~~ 49 (75)
T 2rsn_A 21 VYEVEDILADRVNKNGI-NEYYIKWAGYDW 49 (75)
T ss_dssp CEEEEEEEEEEECSSSC-EEEEEEEESSCG
T ss_pred eEEEEEEEEEEEcCCCc-EEEEEEECCCCC
Confidence 45577888777767787 889999965443
No 119
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=20.11 E-value=1.2e+02 Score=21.08 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=34.3
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEEecCCCCeEEEEEEEeeccccc
Q 031243 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEES 70 (163)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~ 70 (163)
.+.+||.|.|..+. -.-+.|.|.++..+. +. ..+.+..|-|...+
T Consensus 127 ~~~~Gd~V~V~~GP--f~g~~G~v~~v~~~k-~r-~~V~v~ifgr~t~v 171 (181)
T 2jvv_A 127 LFEPGEMVRVNDGP--FADFNGVVEEVDYEK-SR-LKVSVSIFGRATPV 171 (181)
T ss_dssp CCCTTEEEEECSST--TTTEEEEEEEEETTT-TE-EEEEEEETTEEEEE
T ss_pred cCCCCCEEEEeccC--CCCcEEEEEEEeCCC-CE-EEEEEEECCCCEEE
Confidence 56799999999877 467899999997543 33 77888888775543
No 120
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.08 E-value=50 Score=21.11 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=14.5
Q ss_pred CCCCCCCcceeeCCCCCC
Q 031243 145 EMPYNPDDLMVQCEGCSD 162 (163)
Q Consensus 145 ~~~~npd~~~~~C~~C~~ 162 (163)
..|..+..+|.-|.+|++
T Consensus 66 ~~~Ld~~~~YRvCn~CGk 83 (96)
T 3mhs_E 66 EDPLDKPIQYRVCEKCGK 83 (96)
T ss_dssp SSTTSSSCCCEEETTTCC
T ss_pred cccCCCcccchhhhccCC
Confidence 346666789999999986
Done!