BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031246
MQKQNIFYKGALFGGRNADGKFSSKVPCMVTSLHRDRTCAKSFCMRTRNRIPFESKSTGL
ASLKSNHNLRHGKVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLV
VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNNSIC

High Scoring Gene Products

Symbol, full name Information P value
ACHT1
atypical CYS HIS rich thioredoxin 1
protein from Arabidopsis thaliana 0.00026
TRX1
Cytoplasmic thioredoxin isoenzyme
gene from Saccharomyces cerevisiae 0.00078

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031246
        (163 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2120860 - symbol:ACHT1 "atypical CYS  HIS rich...   105  0.00026   1
SGD|S000004033 - symbol:TRX1 "Cytoplasmic thioredoxin iso...    86  0.00078   1


>TAIR|locus:2120860 [details] [associations]
            symbol:ACHT1 "atypical CYS  HIS rich thioredoxin 1"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0016671 "oxidoreductase activity, acting on a sulfur group of
            donors, disulfide as acceptor" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010109 "regulation of photosynthesis"
            evidence=IMP] [GO:0051776 "detection of redox state" evidence=IMP]
            InterPro:IPR005746 InterPro:IPR013766 InterPro:IPR017937
            Pfam:PF00085 PROSITE:PS00194 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161564 GO:GO:0009055
            Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 EMBL:AL049483
            GO:GO:0022900 GO:GO:0045454 PROSITE:PS51352 GO:GO:0015035
            GO:GO:0006662 PANTHER:PTHR10438 GO:GO:0016671 eggNOG:COG0526
            GO:GO:0051776 GO:GO:0010109 EMBL:BT024608 EMBL:AY085376
            EMBL:AF144388 IPI:IPI00517325 PIR:T04271 RefSeq:NP_194346.1
            UniGene:At.21166 ProteinModelPortal:Q8LEK4 SMR:Q8LEK4 PaxDb:Q8LEK4
            PRIDE:Q8LEK4 EnsemblPlants:AT4G26160.1 GeneID:828722
            KEGG:ath:AT4G26160 GeneFarm:2483 TAIR:At4g26160
            HOGENOM:HOG000241250 InParanoid:Q8LEK4 OMA:NMIDITS PhylomeDB:Q8LEK4
            ProtClustDB:CLSN2916096 Genevestigator:Q8LEK4 GermOnline:AT4G26160
            Uniprot:Q8LEK4
        Length = 221

 Score = 105 (42.0 bits), Expect = 0.00026, P = 0.00026
 Identities = 31/68 (45%), Positives = 40/68 (58%)

Query:   102 TDAEFFKILEKSKETGS-LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAP-VIFLK-- 157
             T AE F  L   K+ G  LV+VDFY T CGSC+ +   F KLCK +  +E P ++FLK  
Sbjct:    99 TSAEQF--LNALKDAGDRLVIVDFYGTWCGSCRAM---FPKLCKTA--KEHPNILFLKVN 151

Query:   158 --HNNSIC 163
                N S+C
Sbjct:   152 FDENKSLC 159


>SGD|S000004033 [details] [associations]
            symbol:TRX1 "Cytoplasmic thioredoxin isoenzyme" species:4932
            "Saccharomyces cerevisiae" [GO:0000324 "fungal-type vacuole"
            evidence=IPI] [GO:0042144 "vacuole fusion, non-autophagic"
            evidence=IDA] [GO:0005758 "mitochondrial intermembrane space"
            evidence=IDA] [GO:0006662 "glycerol ether metabolic process"
            evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
            [GO:0015035 "protein disulfide oxidoreductase activity"
            evidence=IEA] [GO:0015036 "disulfide oxidoreductase activity"
            evidence=ISS;IDA] [GO:0080058 "protein deglutathionylation"
            evidence=IGI;IDA] [GO:0045454 "cell redox homeostasis"
            evidence=IEA;TAS] [GO:0000139 "Golgi membrane" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0022900 "electron transport chain" evidence=IEA]
            [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0009263
            "deoxyribonucleotide biosynthetic process" evidence=IEA]
            [GO:0015031 "protein transport" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0006890 "retrograde vesicle-mediated
            transport, Golgi to ER" evidence=IDA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IDA] [GO:0000011 "vacuole
            inheritance" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0034599 "cellular response to oxidative stress" evidence=ISS]
            InterPro:IPR005746 InterPro:IPR013766 InterPro:IPR017937
            Pfam:PF00085 PIRSF:PIRSF000077 PRINTS:PR00421 PROSITE:PS00194
            SGD:S000004033 GO:GO:0005829 GO:GO:0005634 GO:GO:0000139
            GO:GO:0006275 GO:GO:0005758 GO:GO:0009055 GO:GO:0015031
            GO:GO:0034599 Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833
            EMBL:BK006945 GO:GO:0022900 GO:GO:0000011 GO:GO:0006888
            GO:GO:0045454 PROSITE:PS51352 GO:GO:0015036 GO:GO:0015035
            GO:GO:0000324 GO:GO:0006890 KO:K03671 GO:GO:0042144 GO:GO:0006662
            PANTHER:PTHR10438 eggNOG:COG0526 HOGENOM:HOG000292977 GO:GO:0009263
            GO:GO:0080058 GeneTree:ENSGT00530000063008 TIGRFAMs:TIGR01068
            OrthoDB:EOG4M0JB8 EMBL:M59169 EMBL:M62647 EMBL:Z73215 EMBL:AY558203
            PIR:S15048 RefSeq:NP_013144.1 PDB:2I9H PDB:3F3Q PDB:3F3R
            PDBsum:2I9H PDBsum:3F3Q PDBsum:3F3R ProteinModelPortal:P22217
            SMR:P22217 IntAct:P22217 MINT:MINT-2786449 STRING:P22217
            PaxDb:P22217 PeptideAtlas:P22217 EnsemblFungi:YLR043C GeneID:850732
            KEGG:sce:YLR043C OMA:LIEWINN EvolutionaryTrace:P22217
            NextBio:966828 Genevestigator:P22217 GermOnline:YLR043C
            Uniprot:P22217
        Length = 103

 Score = 86 (35.3 bits), Expect = 0.00078, P = 0.00078
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query:    97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYI 135
             V +FKT +EF   + + K    LVVVDFY T CG CK I
Sbjct:     2 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMI 36


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       163   0.00084  107 3  11 22  0.37    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.16u 0.09s 15.25t   Elapsed:  00:00:01
  Total cpu time:  15.16u 0.09s 15.25t   Elapsed:  00:00:01
  Start:  Fri May 10 18:17:01 2013   End:  Fri May 10 18:17:02 2013

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