BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031248
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2
SV=1
Length = 205
Score = 223 bits (567), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 95/146 (65%), Positives = 121/146 (82%)
Query: 6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
MVFLSWGRP+ ++Q+ I+K+G FNYD KY+G +++ +A LKED + KDGFL+NHARVL
Sbjct: 1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60
Query: 66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120
Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
+ES + +K A FG+GSGTLQGHLL
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLA 146
>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3
SV=1
Length = 216
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 56 GFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLP 114
F ++ ++ +G+G+E ++K ALK W+HF L+W F TPI G + K+
Sbjct: 49 NFDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGF 108
Query: 115 WVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHL 149
W+ +I Y+ + ++ + FG+ GTL+ H+
Sbjct: 109 WILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHV 142
>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1
Length = 198
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 38 ATAKPVACLKEDQGLSKDGFLLNHAR-----VLVGSGLETYEKGKTALKTWRHFGLNWAF 92
A ++ A + G S DG + AR V VG G +E+ K AL+ + F +W
Sbjct: 17 ARSREQAPSYAETGWSLDGRTPDWARSGRHRVRVGEGEACWERAKAALRGGQMF-QDWVL 75
Query: 93 V---DPKTPI-QNGVKFCVCVKEFLPWVTLP--LQIVYVNESIRKKKTAASFGFGSGTLQ 146
+ TP+ + G + V+ F PW L + N + +GFG GTL
Sbjct: 76 RPHGEASTPLSRQGATVVLLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLP 135
Query: 147 GHLL 150
GHL+
Sbjct: 136 GHLV 139
>sp|Q8EP46|Y2271_OCEIH UPF0249 protein OB2271 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=OB2271 PE=3
SV=1
Length = 230
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 7 VFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKED-----QGLSKDGFLLNH 61
+ L+WGRP + + + +G F Y + Y+ +A ++++ + K G LNH
Sbjct: 60 LVLTWGRPISNDVASLVQSNGKFRYTSSYREMDPPSLADVEKEWRAQIEEFKKTGLTLNH 119
>sp|P10078|ZFP28_MOUSE Zinc finger protein 28 OS=Mus musculus GN=Zfp28 PE=2 SV=3
Length = 825
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 41 KPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQ 100
KP C + + + G L H RV G Y+KG+ A + HF + K+P
Sbjct: 740 KPYECKECRKTFIQIGHLNQHKRVHTGERTYNYKKGRRAFRQTAHFAHHQQIHSGKSPAH 799
Query: 101 NGV 103
+ +
Sbjct: 800 HSL 802
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,274,996
Number of Sequences: 539616
Number of extensions: 2621519
Number of successful extensions: 5223
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 5
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)