Query 031248
Match_columns 163
No_of_seqs 120 out of 152
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cnr_A Type IV fimbriae assemb 88.6 1.4 4.6E-05 32.4 6.6 43 87-129 30-74 (117)
2 1ywu_A Hypothetical protein PA 87.3 1.8 6E-05 32.5 6.7 46 89-142 61-109 (149)
3 2l74_A Putative uncharacterize 85.6 2.3 7.9E-05 31.7 6.6 46 89-142 59-107 (145)
4 2rde_A Uncharacterized protein 42.4 64 0.0022 25.1 6.5 50 89-142 165-221 (251)
5 3imo_A Integron cassette prote 34.5 38 0.0013 25.6 3.6 25 120-150 79-114 (133)
6 2kr7_A FKBP-type peptidyl-prol 27.7 1.1E+02 0.0036 22.6 5.2 48 98-160 93-141 (151)
7 2kfw_A FKBP-type peptidyl-prol 22.4 65 0.0022 25.2 3.2 48 98-161 89-137 (196)
8 1ix5_A FKBP; ppiase, isomerase 21.4 58 0.002 24.1 2.6 42 98-159 103-145 (151)
9 4dt4_A FKBP-type 16 kDa peptid 20.6 1.2E+02 0.0041 23.1 4.3 48 98-160 112-160 (169)
10 3kyf_A PP4397, putative unchar 19.9 1.8E+02 0.0061 22.1 5.3 56 89-146 154-214 (231)
No 1
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=88.61 E-value=1.4 Score=32.45 Aligned_cols=43 Identities=7% Similarity=-0.025 Sum_probs=34.4
Q ss_pred ccceeEecCCCCCcCCcEEEEEeecccc--eeecceEEEEEeecc
Q 031248 87 GLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNESI 129 (163)
Q Consensus 87 r~~g~~V~~~~pv~~G~~V~v~~~~~~~--~~~~PcRVVyv~dep 129 (163)
..+|++|.++.|..+|+.|.+.+.+..- .+....+|||+....
T Consensus 30 s~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~ 74 (117)
T 3cnr_A 30 KGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAG 74 (117)
T ss_dssp TTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC-
T ss_pred CCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCC
Confidence 5689999999999999999999875432 356679999998654
No 2
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=87.32 E-value=1.8 Score=32.51 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=34.7
Q ss_pred ceeEecCCC--CCcCCcEEEEEeecc-cceeecceEEEEEeecccccCCcceeEEec
Q 031248 89 NWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNESIRKKKTAASFGFGS 142 (163)
Q Consensus 89 ~g~~V~~~~--pv~~G~~V~v~~~~~-~~~~~~PcRVVyv~dep~~~~~~~r~GFaY 142 (163)
+|+.|..+. ++.+|+.|.|.+... ..-+..|++||++.+ ..+|+..
T Consensus 61 ~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~--------~~~gl~f 109 (149)
T 1ywu_A 61 HGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD--------GLLGFEC 109 (149)
T ss_dssp SEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET--------TEEEEEE
T ss_pred ccCEEEcCCcCCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC--------CEEEEEE
Confidence 688886554 588999999988744 234789999999986 5666654
No 3
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=85.61 E-value=2.3 Score=31.69 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=34.6
Q ss_pred ceeEecCCC--CCcCCcEEEEEeecc-cceeecceEEEEEeecccccCCcceeEEec
Q 031248 89 NWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNESIRKKKTAASFGFGS 142 (163)
Q Consensus 89 ~g~~V~~~~--pv~~G~~V~v~~~~~-~~~~~~PcRVVyv~dep~~~~~~~r~GFaY 142 (163)
+|+.|..+. ++.+|+.|.|.+... ..-+..|++||++.+ ..+|+..
T Consensus 59 ~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~--------~~~gl~f 107 (145)
T 2l74_A 59 HGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD--------GLLGFEC 107 (145)
T ss_dssp TEEEEECCTTCCCCTTSCEEEEEECSSSCEEEEEEEEEEEET--------TEEEEEE
T ss_pred CCCEEEcCCccCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC--------CEEEEEE
Confidence 688886555 588999999988744 134789999999986 5666654
No 4
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI protein structure initiative, northeast structural genomics consortium, NESG; HET: C2E; 1.92A {Vibrio cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Probab=42.44 E-value=64 Score=25.15 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=33.4
Q ss_pred ceeEecCC---CCCcCCcEEEEEeeccc---c-eeecceEEEEEeecccccCCcceeEEec
Q 031248 89 NWAFVDPK---TPIQNGVKFCVCVKEFL---P-WVTLPLQIVYVNESIRKKKTAASFGFGS 142 (163)
Q Consensus 89 ~g~~V~~~---~pv~~G~~V~v~~~~~~---~-~~~~PcRVVyv~dep~~~~~~~r~GFaY 142 (163)
+|+.+..+ .+..+|+.|.+.+.... . .+..+++|+++.... ...++|+-+
T Consensus 165 gG~~i~~~~~~~~~~~g~~v~l~~~l~~~~~~~~~~~~~~V~~~~~~~----~~~~~Gl~F 221 (251)
T 2rde_A 165 SGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSL----HHARYGLEF 221 (251)
T ss_dssp SEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEECS----SCEEEEEEE
T ss_pred cCcEEEecCCCCCcCCCCEEEEEEEcCCCCcccceeEEEEEEEeEecC----CCeEEeEEE
Confidence 67777543 24899999988887531 1 247899999997543 224566544
No 5
>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139}
Probab=34.52 E-value=38 Score=25.60 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEEEeecccccCCcceeEEec-----------ccCCCCcc
Q 031248 120 LQIVYVNESIRKKKTAASFGFGS-----------GTLQGHLL 150 (163)
Q Consensus 120 cRVVyv~dep~~~~~~~r~GFaY-----------GTLpGHpe 150 (163)
-+|+||.-.- .|+.|.| ||+.|+++
T Consensus 79 anvlWvti~g------kRyaFsYNh~t~~IElR~gs~~Ga~l 114 (133)
T 3imo_A 79 KNVLWVTING------ERYAFSYNHSSEKIEMRKGNIQGNTI 114 (133)
T ss_dssp SEEEEEEETT------EEEEEEEETTTTEEEEEESSTTSCCS
T ss_pred cceEEEEEcC------EEEEEEeccccceEEEecCcccceEE
Confidence 4678888766 8999999 66666664
No 6
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=27.65 E-value=1.1e+02 Score=22.56 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCcCCcEEEEEeecccceeecceEEEEEeecccccCCcceeEEecccCCCCccCceee-EEEEe
Q 031248 98 PIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCL-HIIIV 160 (163)
Q Consensus 98 pv~~G~~V~v~~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLpGHpe~GEE~-F~v~~ 160 (163)
.+++|..+.+...-+ -..|.+|+-|.++. -.+-| -||++|... |-|++
T Consensus 93 ~~~~G~~~~~~~~~G---~~~~~~V~~v~~~~------v~vD~------NHPLAG~~L~F~v~v 141 (151)
T 2kr7_A 93 ELEKGMSVFGQTEDN---QTIQAIIKDFSATH------VMVDY------NHPLAGKTLAFRFKV 141 (151)
T ss_dssp CCCTTCEEEEEETTT---EEEEEEEEEECSSE------EEEEE------CCTTSCCCEEEEEEE
T ss_pred CCccCCEEEEECCCC---CEEEEEEEEECCCE------EEEEC------CCcCCCCEEEEEEEE
Confidence 478999887765333 24688899998855 55565 699999985 55543
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=22.43 E-value=65 Score=25.16 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=31.5
Q ss_pred CCcCCcEEEEEeecccceeecceEEEEEeecccccCCcceeEEecccCCCCccCceee-EEEEec
Q 031248 98 PIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCL-HIIIVN 161 (163)
Q Consensus 98 pv~~G~~V~v~~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLpGHpe~GEE~-F~v~~~ 161 (163)
.+++|..|.+....+ ..|.+|+-|.++. -.+-| -||++|..+ |-|++-
T Consensus 89 ~~~~G~~~~~~~~~G----~~~~~V~~v~~~~------V~vD~------NHPLAGk~L~F~vev~ 137 (196)
T 2kfw_A 89 ELQVGMRFLAETDQG----PVPVEITAVEDDH------VVVDG------NHMLAGQNLKFNVEVV 137 (196)
T ss_dssp CCCTTCEEEEEETTE----EEEEEBCCCCSSS------EEECC------CCTTSCCCCEEEEEEC
T ss_pred CcccCCEEEEECCCC----cEEEEEEEEcCCE------EEEeC------CCCCCCCeEEEEEEEE
Confidence 367898887654332 3577777776644 44444 699999984 666653
No 8
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=21.45 E-value=58 Score=24.07 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCcCCcEEEEEeecccceeecceEEEEEeecccccCCcceeEEecccCCCCccCceee-EEEE
Q 031248 98 PIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCL-HIII 159 (163)
Q Consensus 98 pv~~G~~V~v~~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLpGHpe~GEE~-F~v~ 159 (163)
.+++|..|.+.. .|++|+-|.++. -.+-| -||++|... |-|+
T Consensus 103 ~~~~G~~~~~~~--------~~~~V~~v~~~~------v~vD~------NHPLAG~~L~F~ve 145 (151)
T 1ix5_A 103 EPEEGMVILAEG--------IPATITEVTDNE------VTLDF------NHELAGKDLVFTIK 145 (151)
T ss_dssp CCCTTEEEESSS--------CEEEEEEEETTE------EEEEC------CCSSTTCCEEEECC
T ss_pred cccccCEEEECC--------eEEEEEEEcCCE------EEEeC------CCCCCCCeEEEEEE
Confidence 467888765321 689999998855 55555 699999875 4443
No 9
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=20.61 E-value=1.2e+02 Score=23.10 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=33.3
Q ss_pred CCcCCcEEEEEeecccceeecceEEEEEeecccccCCcceeEEecccCCCCccCceee-EEEEe
Q 031248 98 PIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCL-HIIIV 160 (163)
Q Consensus 98 pv~~G~~V~v~~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLpGHpe~GEE~-F~v~~ 160 (163)
.+++|..+.+....+ -..|.+|+-|.++. -.+-| -||++|... |-|++
T Consensus 112 ~~~~G~~~~~~~~~G---~~~~~~V~~v~~~~------V~vD~------NHPLAGk~L~F~vev 160 (169)
T 4dt4_A 112 EPEIGAIMLFTAMDG---SEMPGVIREINGDS------ITVDF------NHPLAGQTVHFDIEV 160 (169)
T ss_dssp CCCTTCEEEEECTTS---CEEEEEEEEEETTE------EEEEC------SCTTTTCCEEEEEEE
T ss_pred CCCCCcEEEEECCCC---CEEEEEEEEEcCCE------EEEeC------CCccCCCEEEEEEEE
Confidence 478899887754333 24688999998855 55555 699999985 55544
No 10
>3kyf_A PP4397, putative uncharacterized protein; C-DI-GMP, PILZ domain, VCA0042, unknown function; HET: 5GP; 2.10A {Pseudomonas putida} PDB: 2gjg_A
Probab=19.92 E-value=1.8e+02 Score=22.11 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=35.1
Q ss_pred ceeEecCC----CCCcCCcEEE-EEeecccceeecceEEEEEeecccccCCcceeEEecccCC
Q 031248 89 NWAFVDPK----TPIQNGVKFC-VCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQ 146 (163)
Q Consensus 89 ~g~~V~~~----~pv~~G~~V~-v~~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLp 146 (163)
+|+.+..+ .++.+|+.+. +.+....-.+..+++|+.+.... +.+..++|+-+=-|+
T Consensus 154 GG~~~~~~~~~~~~l~~g~~~~~~~l~Lp~g~~~~~~~V~~~~~~~--~~~~~~~G~~F~~l~ 214 (231)
T 3kyf_A 154 TGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTMVELRHLHYEE--RINTTFAGVRFHNLS 214 (231)
T ss_dssp SEEEEEEEBCCGGGCCTTCEEEEEEETTTTCEEEEEEEEEEEEEEG--GGTEEEEEEEEESCC
T ss_pred CcEEEEecCcccccCCCCCEeeeeEEECCCCEEEEEEEEEEeEEcC--CCcEEEEEEEEccCC
Confidence 67766433 2589999886 66554322588899999986533 112346777664443
Done!