BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031249
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 179 bits (454), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 98/112 (87%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK D
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126
L RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 176 bits (446), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/107 (76%), Positives = 94/107 (87%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
L RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I +
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 162 bits (410), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 91/110 (82%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQ FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR NPN I+L+GNK D
Sbjct: 87 AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
L +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ
Sbjct: 147 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 90/108 (83%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR NPN I+L+GNK D
Sbjct: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
L +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 132 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 86/116 (74%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+PN+ ++L GNK D
Sbjct: 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
L R V+ E +FA+EN L+FLE SA T +NVEEAF+K A IL I G LD
Sbjct: 142 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDP 197
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 87/115 (75%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+ N+ I+L GNK D
Sbjct: 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
L R V+ E +FA+EN L+FLE SA T +NVEEAF++ A KIL I+ G LD
Sbjct: 127 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 82/106 (77%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+ N+ I+L GNK D
Sbjct: 68 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
L R V+ E +FA+EN L+FLE SA T ++VEEAF++ A KIL
Sbjct: 128 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 81/106 (76%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+ N+ I+L GNK D
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
L R V+ E +FA+EN L+FLE SA T ++VEEAF++ A KIL
Sbjct: 125 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA GAL+VYDI++ ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
LAH RAV EE + FA+EN LLF E SA ++NV++AF + I Q + + +D
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL---- 185
Query: 135 SGIKVGYGRGQGPSGARDGTVS 156
G G G S T+S
Sbjct: 186 -GDSSANGNANGASAPNGPTIS 206
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 86/124 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I + + GA ++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 192
Query: 135 SGIK 138
S +K
Sbjct: 193 SNVK 196
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 71/98 (72%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 71/98 (72%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 86 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 80/110 (72%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T R++F+++ W+++ ++A N++ +LVGNKCD
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
L +R V+ +EG + A +G+ F+E SA+ A NVE+AF A +I + +Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 75/111 (67%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
L H RAV +E FA++N L F+E SA + NVEEAF +I + + +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 172
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 115 bits (289), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 56 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 115
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 116 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 65 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 7/148 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + +LVGNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
L +R V + ++FA N + FLE SA + NVE+AF+ A +I +++ + L+ +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
+G + +++ GGCC
Sbjct: 185 K-------EDKGNVNLKGQSLTNTGGCC 205
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 71/98 (72%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA GALLVYDIT++ +F ++ WL++ R +A+ N+ I+LVGNK D
Sbjct: 65 AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H R ++ + Q+AK+ L F+E SA A NVE AF
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 76/105 (72%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F AA+I
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ I LVGNK D
Sbjct: 68 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + +LVGNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
L +R V + ++FA N + FLE SA + NVE+AF+ A +I +++ + L+ +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 135 SGIKVGYGRGQGPSGARDGTVSQRGGCC 162
K G +G S G GGCC
Sbjct: 185 KEDK-GNVNLKGQSLTNTG-----GGCC 206
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ I LVGNK D
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 74/105 (70%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA+ ++ M++GNKCD
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
+ +R VSKE GE+ A + G+ F+E SA+ NVE AF A I
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 74/105 (70%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA+ ++ M++GNKCD
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
+ +R VSKE GE+ A + G+ F+E SA+ NVE AF A I
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 76/105 (72%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVG KCD
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 79/115 (68%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GAL+VYDI++ ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 67 AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
LAH RAV +E + FA EN +LF E SA + NV++AF + I Q + + +D
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 75/105 (71%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+T +YYR A LL+YD+T + +F+++ +WL + ++A ++++ML+GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
AH R V +E+GE+ AKE GL F+E SA+T NV+ AF A ++
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 64 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 123
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 72/105 (68%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT +TF +W+++ ++ A+PN+ I L GNK D
Sbjct: 62 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +RAV +E + +A +N LLF+E SA+TA NV E F+ A K+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 73/105 (69%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT +ETF +W+++ ++ A+P++ I L GNK D
Sbjct: 65 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKAD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA++R V EE + +A +N LLF+E SA+TA NV + F+ A K+
Sbjct: 125 LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 72/105 (68%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT +TF +W+++ ++ A+PN+ I L GNK D
Sbjct: 60 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 119
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +RAV +E + +A +N LLF+E SA+TA NV E F+ A K+
Sbjct: 120 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 71/111 (63%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ HA + +MLVGNK D
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
L+ R V EE FA+ NGLLFLE SA + NVE AF +I + +
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 71/111 (63%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ HA + +MLVGNK D
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
L+ R V EE FA+ NGLLFLE SA + NVE AF +I + +
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 72/105 (68%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + +LVGNKCD
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L +R V + ++FA N + FLE SA + NVE+AF+ A +I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 75/105 (71%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++A+ N++ +LVGNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE+AF+ AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 75/105 (71%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++A+ N++ +LVGNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L ++ V ++FA G+ FLE SA+ A NVE+AF+ AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYDIT TF ++ W + +HAN ++LVGNK D
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
+ R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 120 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 64 AGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 123
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
LA++RAV +E + +A +N LLF E SA+T+ NV E F A K+ +N
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++LVGNK D
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
+ R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 181
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++LVGNK D
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
+ R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 124 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 168
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYDIT TF ++ W + +HAN ++LVGNK D
Sbjct: 60 AGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+ SY R + A++VYDIT +F S W++D R ++ IMLVGNK D
Sbjct: 59 AGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD 118
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
LA +R ++ EEGEQ AKE ++F+E SA+T NV++ F + A+ +L+
Sbjct: 119 LADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 71/105 (67%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E + S+ YYRGA A++VYDIT +TF +W+++ ++ A+PN+ I L GNK D
Sbjct: 62 AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +RAV +E + +A +N LLF+E SA+TA NV E F+ A K+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++LVGNK D
Sbjct: 60 AGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 120 -XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRSIT+SYYR A +L YDIT E+F L WL + Q+A+ + +LVGNK D
Sbjct: 83 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
LA RR VS++ E+F++ + +LE SA+ + NVE+ F+ A +++ ++ L VN+
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL--VNNV 200
Query: 135 S 135
S
Sbjct: 201 S 201
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 70/105 (66%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + S+ YYRGAA A++V+D+T + +F W+++ + NPNM + L GNK D
Sbjct: 69 AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD 128
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L R V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++
Sbjct: 129 LLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E + S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK D
Sbjct: 62 AGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA++RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+
Sbjct: 122 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F SIT +YYR A G +LVYDIT++ETF+ L W++ ++A+ + ++LVGNK D
Sbjct: 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142
Query: 75 LAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
R +++++GE+FA++ G+ F EASA+ NV+E F+K IL+ +
Sbjct: 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT+SYYR A GA+L YDIT+R +F + W+ED R++A N+ +L+GNK D
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 75 LAHRRAVSKEEGEQFAKENGLLF-LEASARTAQNVEEAFIKTAAKIL 120
L+ R VS E + A+ +L +E SA+ + NVEEAF++ A +++
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH P++ + + GNKCD
Sbjct: 62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L R V + + + +A +F+E SA+ A N+ E FI+ + +I
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+ SY R +A A++VYDIT +F + W++D R ++ IMLVGNK D
Sbjct: 63 AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 70/105 (66%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+ SY R + A++VYDIT +F+ S W++D R ++ IMLVGNK D
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L+ +R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 69/105 (65%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH P++ + + GNKCD
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L R V + + + +A +F+E SA+ A N+ E FI+ + +I
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+ SY R + A++VYDIT +F + W++D R ++ IMLVGNK D
Sbjct: 58 AGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 117
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 118 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E FRS+ SY R +A A++VYDIT +F + W++D R ++ IMLVGNK D
Sbjct: 70 AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKC 73
AGQE FR++T SYYRGA G +LVYD+TRR+TF L +WL + + N + LVGNK
Sbjct: 72 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKI 131
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 133
D R V + EG +FA+++ LF+EASA+T V+ AF + KI+Q G ++ N
Sbjct: 132 D-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQ 188
Query: 134 QSGIKVG 140
SG G
Sbjct: 189 NSGPSSG 195
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N ++LVGNKCD
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
+ R VS E G Q A G F EASA+ NV++ F
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E FRS+ SY R + A++VYDIT +F + W++D R ++ IMLVGNK D
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 132
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 68/105 (64%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E FRS+ SY R + A++VYDIT +F + W++D R ++ IMLVGNK D
Sbjct: 63 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
LA +R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA G LL+YDI +E+F + W + ++ N ++LVGNKCD
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
L R V E+G + A + G F EASA+ NV++ F + I + + E
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 64/98 (65%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N ++LVGNKCD
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
+ R V E+G+ A++ G F EASA+ +V +AF
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F S+ YYR A AL+VYD+T+ ++F W+++ + A+ ++ I LVGNK D
Sbjct: 60 AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119
Query: 75 LAH---RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
R V++EEGE+ A+E GLLF E SA+T +NV + F+ KI
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E +R+IT +YYRGA G +L YDIT E+FN + W + ++ N ++LVGNKCD
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 134
R VS E G Q A G F EASA+ NV++ F + I + E +LD +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE-SLDTAD-- 181
Query: 135 SGIKVGYGRGQGP 147
G QGP
Sbjct: 182 ---PAVTGAKQGP 191
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 67/98 (68%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F S+ YYRG+A A++VYDIT++++F L W+++ ++H N+ + + GNKCD
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCD 139
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
L+ R V ++ +++A+ G + +E SA+ A N+EE F
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRS+ SY R +A A++VYDIT R++F + + W++D ++ I LVGNK D
Sbjct: 58 AGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 117
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
L R V+ EEG Q A+E F E SA+ N++ F KTA+K+
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT +YYRG G ++VYD+T E+F ++ WL + Q+ + ++ +LVGNK D
Sbjct: 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
R+ V E+ +FA + G+ E SA+ NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
AGQE FRS+T +++R A G LL++D+T +++F ++ +W+ + +A NP+ I+L+GN
Sbjct: 92 AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGN 149
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
K DL +R V++ + + A + G+ + E SA T QNVE+A I++ +++
Sbjct: 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 50/62 (80%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 55 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 114
Query: 75 LA 76
L
Sbjct: 115 LT 116
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE FRSI +SY+R A G LL+YD+T ++F ++ W++ A+ + IMLVGNK D
Sbjct: 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144
Query: 75 LAH------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
+ ++ V GE+ A G LF E SA+ N+ EA + A ++
Sbjct: 145 IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + +VGNK D
Sbjct: 77 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 136
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
L R VS +E E +A+ G SA+ + +EE F+ ++++
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + +VGNK D
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
L R VS +E E +A+ G SA+ + +EE F+ ++++
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + +VGNK D
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
L R VS +E E +A+ G SA+ + +EE F+ ++++
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 73
AG E FRS+T +++R A G LL++D+T ++F ++ +W+ + HA + N I+L GNK
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129
DL +RAV +EE + A++ G+ + E SA N+ A I+ ++ E ++D
Sbjct: 138 DLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA-IEMLLDLIMKRMERSVD 192
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
AG E FRS+T +++R A G LL++D+T +++F ++ +W+ + +A NP+ I+L+GN
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGN 135
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
K DL +R V++ + + A++ G+ + E SA T QNVE++ I++ +++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
AG E FRS+T +++R A G LL++D+T +++F ++ +W+ + +A NP+ I+L+GN
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD--IVLIGN 135
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
K DL +R V++ + + A++ G+ + E SA T QNVE++ I++ +++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + SI YYRGA A++V+DI+ T + +W+ + + N I+LV NK D
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKID 158
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123
++ V E +++A++N LLF++ SA+T N++ F A +I +NI
Sbjct: 159 -KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
AG E FRS+T +++R A G LL +D+T +++F ++ +W + +A NP+ I+L+GN
Sbjct: 78 AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD--IVLIGN 135
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111
K DL +R V++ + + A++ G+ + E SA T QNVE++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
AGQE F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++G
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
NK DL +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
N+
Sbjct: 183 YNE 185
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
AGQE F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++G
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
NK DL +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
N+
Sbjct: 183 YNE 185
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGN 71
AG E FRS+T +++R A G LL +D+T +++F ++ +W + +A NP+ I+L+GN
Sbjct: 78 AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD--IVLIGN 135
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111
K DL +R V++ + + A++ G+ + E SA T QNVE++
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F +IT++YYRGA +LV+ T RE+F +SSW E ++ LV NK D
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
L + EE E AK L F S + NV E F A K LQ
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANP 62
+Q+ L AG E F ++ Y + G LVY IT + TFN L E R
Sbjct: 50 AQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD 109
Query: 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
++ ++LVGNKCDL R V KE+G+ A++ N FLE+SA++ NV E F +I
Sbjct: 110 DVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
AGQE F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++G
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
NK D +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++
Sbjct: 125 NKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
N+
Sbjct: 183 YNE 185
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANP 62
+Q+ L AG E F ++ Y + G LVY IT + TFN L E R
Sbjct: 48 AQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD 107
Query: 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
++ ++LVGNKCDL R V KE+G+ A++ N FLE+SA++ NV E F +I
Sbjct: 108 DVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKC 73
AGQE F ++ Y R G LLV+ +T R +F + + R ++L+GNK
Sbjct: 61 AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125
DL H+R V++EEG+Q A++ + ++EASA+ NV++AF ++++ QE
Sbjct: 121 DLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 15 AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 72
AGQE FR S+ + YYR + VYD+T +F+ L +W+E+ +QH N + +LVGNK
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136
Query: 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 119
CDL V + ++FA + + E SA+ + VE F+ A K+
Sbjct: 137 CDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVG 70
AG E F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++G
Sbjct: 65 AGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130
NK DL +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++
Sbjct: 125 NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVEL 182
Query: 131 VND 133
N+
Sbjct: 183 YNE 185
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN 63
Q+ L AG E F ++ Y + G LVY IT + TFN L E R +
Sbjct: 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
+ ++LVGNKCDL R V KE+G+ A++ FLE+SA++ NV E F +I
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN 63
Q+ L AG E F ++ Y + G LVY IT + TFN L E R +
Sbjct: 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 119
+ ++LVGNKCDL R V KE+G+ A++ FLE+SA++ NV E F +I
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 15 AGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNK 72
AGQE FR S+ + YYR + VYD T +F+ L +W+E+ +QH N + +LVGNK
Sbjct: 86 AGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNK 145
Query: 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 119
CDL V + ++FA + E SA+ + VE F A K+
Sbjct: 146 CDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVG 70
AGQE F+S+ ++YRGA +LVYD+T +F ++ SW ++ HAN N +++G
Sbjct: 66 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125
Query: 71 NKCDLAH-RRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
NK D ++ VS++ ++ AK G LFL SA+ A NV+ AF + A LQ Q
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQNQ 181
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMS 65
W + GQ + Y GA G LLVYDIT ++F +L W ++ + +
Sbjct: 60 IWDI--GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 66 IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ LVGNK DL H R + E+ +F +ENG SA+T +V F K AA+IL
Sbjct: 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
AGQE FRS+ +YRG+ LL + + ++F +LS+W ++ +A+ + +++G
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 71 NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
NK D+ R+ VS EE + + K+NG + E SA+ + NV AF + +IL
Sbjct: 128 NKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
AGQE FRS+ +YRG+ LL + + ++F +LS+W ++ +A+ + +++G
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 71 NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
NK D++ R+ VS EE + + ++NG + E SA+ A NV AF + ++L
Sbjct: 126 NKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
AGQE FRS+ +YRG+ LL + + ++F +LS+W ++ +A+ + +++G
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 71 NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
NK D++ R+ VS EE + + ++NG + E SA+ A NV AF + ++L
Sbjct: 124 NKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
L AGQE + +I +Y+R G L V+ IT E+F + + E R + N+ +LVG
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL +R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
L AGQE + +I +Y+R G L V+ IT E+F + + E R + N+ +LVG
Sbjct: 59 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 118
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL +R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
L AGQE + +I +Y+R G L V+ IT E+F + + E R + N+ +LVG
Sbjct: 67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL +R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
L AGQE + +I +Y+R G L V+ IT E+F + + E R + N+ +LVG
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL +R VS EE + A + + ++E SA+T NV++ F +I
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 56 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 115
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 116 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F ++ + E R + ++ ++LVGNKC
Sbjct: 77 AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121
DL R V ++ + AK G+ F+E SA+T Q VE+AF +I Q
Sbjct: 137 DLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 55 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 114
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 115 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAGR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 54 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 113
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 114 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 54 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 113
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 114 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLV 69
L AG E + +I +Y+R G LLV+ IT E+F + + E R A + + +++V
Sbjct: 60 LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 119
Query: 70 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
GNK DL RR V EE A+E G+ ++E SA+T NV++ F +I
Sbjct: 120 GNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLV 69
L AG E + +I +Y+R G LLV+ IT E+F + + E R A + + +++V
Sbjct: 56 LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 115
Query: 70 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
GNK DL RR V EE A+E G+ ++E SA+T NV++ F +I
Sbjct: 116 GNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKC
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKC
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKC
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKC
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10 WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
W++L AGQE F ++ Y R G L+VY +T + +F H+ + + R +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 65 SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
++LV NK DL H R V++++G++ A + + ++E SA+ NV++ F
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
AGQE F ++ Y R G LLV+ I R++FN + + + R + ++LVGNK
Sbjct: 65 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 124
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
DL +R V + E F + + + EASA+ NV+EAF
Sbjct: 125 DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10 WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
W++L AGQE F ++ Y R G L+VY +T + +F H+ + + R +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 65 SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
++LV NK DL H R V++++G++ A + + ++E SA+ NV++ F
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10 WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
W++L AGQE F ++ Y R G L+VY +T + +F H+ + + R +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 65 SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
++LV NK DL H R V++++G++ A + + ++E SA+ NV++ F
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 10 WSLLQ----AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE-DARQHANPNM 64
W++L AGQE F ++ Y R G L+VY +T + +F H+ + + R +
Sbjct: 60 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 119
Query: 65 SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAF 112
++LV NK DL H R V++++G++ A + + ++E SA+ NV++ F
Sbjct: 120 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
+ ++LVGNKCDL R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 110 VPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGN+CDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNRCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQAG-QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L G QE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVG 70
L AG E + +I +Y+R G L V+ IT E+F + + E R + N+ +LVG
Sbjct: 59 LDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 118
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL +R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQA-GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L GQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVG 70
AGQE F+S+ +YRGA LL + + R++F +L +W ++ +A+ + +++G
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 71 NKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
NK D R V+ EE + + ENG +LE SA+ NV AF + ++L
Sbjct: 124 NKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG+E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKC
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
DLA R V + + A+ G+ ++E SA+T Q VE+AF
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 15 AGQESFRSITRS-YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNK 72
AGQE +I R + R G +LVYDIT R +F + + P N++++LVGNK
Sbjct: 84 AGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141
Query: 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKI 119
DL H R VS EEGE+ A E F E SA T + N+ E F + ++
Sbjct: 142 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 73
AGQ+ + + S+ G G +LVY +T +F + S + + H + ++LVGNK
Sbjct: 80 AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
DL+ R V EG++ A+ G F+E+SAR Q + F K +I
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 54 ETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 113
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 114 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AG E + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNKCDLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKCDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ R+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 60 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 118
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 119 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 175
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ R+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVG 70
L AG E + ++ Y R G L V+ I ++F + + E R + ++ ++LVG
Sbjct: 74 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NKCDL R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 134 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 130
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 131 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 130
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 131 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + YY GA+GA+L +D+T R T +L+ W+++ + I++ NK D
Sbjct: 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116
+ +R+ +SK+ + K + E SA+TA N F+ A
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ R+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
+ ++LVGNK DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 109 VPMVLVGNKSDLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNK
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE F + YY A A++ +D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ R+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + YRGA +L + + + ++ N L W+ + R+ A PN+ I+LVG K
Sbjct: 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKL 123
Query: 74 DL--------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
DL H ++ +GE+ K+ G ++E S++T QNV+ F TA K++
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVV 178
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 62 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 120
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
+ R+ K + F ++ L + + SA++ N E+ F+ A K+ N Q
Sbjct: 121 VKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 69 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 127
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
+ R+ K + F ++ L + + SA++ N E+ F+ A K+ N Q
Sbjct: 128 VKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 119
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124
+ R+ K + F ++ L + + SA++ N E+ F+ A K+ N Q
Sbjct: 120 VKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 6 ESFFWSLLQ-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPN 63
E+ +L AGQE + ++ Y R G L V+ I ++F + + E R + +
Sbjct: 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
+ ++LVGNK DL R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 110 VPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 69 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 127
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ R+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 128 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 171
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVG 70
L AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVG
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 117 NKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVG 70
L AGQE + ++ Y R G L V+ I ++F + + E R + ++ ++LVG
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119
NK DL R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 117 NKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 63 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 121
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120
+ R+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 122 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 165
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D
Sbjct: 67 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 125
Query: 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 131
+ R+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
A QE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNK
Sbjct: 59 AAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKX 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKC 73
A QE + ++ Y R G L V+ I ++F + + E R + ++ ++LVGNK
Sbjct: 59 AAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKX 118
Query: 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122
DLA R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 119 DLAAR-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
AGQE + + YRGA +L + + + ++ +++ W+ + R +A P + I+LVG K
Sbjct: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKL 120
Query: 74 DLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121
DL + ++ +GE+ K G +++E S++T QNV+ F +LQ
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + YRGA LL + + + ++ ++ WL + + +A P + I+LVG K
Sbjct: 62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKL 120
Query: 74 DLAHRR----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119
DL + +++ +GE+ K G + +LE S++T QNV+ F TA ++
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRV 176
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNK 72
G F ++ R +LVY IT R++ L E + ++ IMLVGNK
Sbjct: 59 TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118
Query: 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
CD + R V E E A+ F+E SA+ NV+E F
Sbjct: 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
AGQ+ + ++Y G +LVY +T ++F + L D + IMLVGN
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 119
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
K DL R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
AGQ+ + ++Y G +LVY +T ++F + L D + IMLVGN
Sbjct: 57 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 114
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
K DL R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANP 62
S S L AG E F S+ Y + G +LVY + +++F + + R
Sbjct: 48 SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE 107
Query: 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
+ ++LVGNK DL R VS EG A+E G F+E SA++ V+E F
Sbjct: 108 KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
AGQ+ + ++Y G +LVY +T ++F + L D + IMLVGN
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 119
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
K DL R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGN 71
AGQ+ + ++Y G +LVY +T ++F + L D + IMLVGN
Sbjct: 60 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGN 117
Query: 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
K DL R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 26 SYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84
S +G + ++VY I R +F S ++ R H ++ I+LVGNK DLA R VS E
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 85 EGEQFAKENGLLFLEASARTAQNVEEAF 112
EG A F+E SA NV E F
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIML 68
L AG + ++ Y+ G A+LV+D++ E+F +W E AR + +L
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVL 137
Query: 69 VGNKCDL-AHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKILQNIQE 125
V NK DL R V + + +A N L F + SA ++ + F+ A +N ++
Sbjct: 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
L+VY IT R +F + L L ARQ ++ I+LVGNK DL R VS EG A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+E F
Sbjct: 143 VFDXKFIETSAAVQHNVKELF 163
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
L+VY IT R +F + L L ARQ ++ I+LVGNK DL R VS EG A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+E F
Sbjct: 143 VFDCKFIETSAAVQHNVKELF 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
AGQE + + YRGA +L + + + ++ ++S W+ + + +A P + I+LVG K
Sbjct: 64 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKL 122
Query: 74 DLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121
DL + ++ +GE+ K G ++E S+++ +NV+ F +LQ
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
L+VY IT R +F + L L ARQ ++ I+LVGNK DL R VS EG A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAV 142
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+E F
Sbjct: 143 VFDCKFIETSAAVQHNVKELF 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
L+VY IT R +F S L ARQ ++ I+LVGNK DL R VS EG A
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAV 173
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+E F
Sbjct: 174 VFDCKFIETSAAVQHNVKELF 194
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 64 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 59 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 118
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 59 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 118
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKD 140
Query: 75 LAH----RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 112
L RR ++K + E E G +LE SA+T + V E F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140
Query: 75 LAH----RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 112
L RR ++K + E E G +LE SA+T + V E F
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 35 LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
L+V+ +T R +F+ + L R + ++ ++LVGNK DLA R VS EEG A
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 94 GLLFLEASARTAQNVEEAF 112
+E SA N E F
Sbjct: 161 SCKHIETSAALHHNTRELF 179
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 35 LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
L+V+ +T R +F+ + L R + ++ ++LVGNK DLA R VS EEG A
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 94 GLLFLEASARTAQNVEEAF 112
+E SA N E F
Sbjct: 150 SCKHIETSAALHHNTRELF 168
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75 LAH----RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 112
L RR ++K + E E G +LE SA+T + V E F
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 35 LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93
L+V+ +T R +F+ + L R + ++ ++LVGNK DLA R VS EEG A
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 94 GLLFLEASARTAQNVEEAF 112
+E SA N E F
Sbjct: 140 SCKHIETSAALHHNTRELF 158
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AG E + + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 75 L---AHRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
L H R V EEG A G ++E SA+T V E F
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH--ANPNMSIMLVGNK 72
G F ++ R +LV+ +T +++ L + Q + ++ +MLVGNK
Sbjct: 64 TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123
Query: 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 112
CD +R V E + A+E F+E SA+ NV+E F
Sbjct: 124 CD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
++VY +T + +F + L L ARQ ++ I+LVGNK DL R VS +EG A
Sbjct: 77 VIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAV 134
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+ F
Sbjct: 135 VFDCKFIETSAALHHNVQALF 155
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
++VY +T + +F + L L ARQ ++ I+LVGNK DL R VS +EG A
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAV 139
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+ F
Sbjct: 140 VFDCKFIETSAALHHNVQALF 160
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 35 LLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
++VY +T + +F + L L ARQ ++ I+LVGNK DL R VS +EG A
Sbjct: 82 VIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAV 139
Query: 92 ENGLLFLEASARTAQNVEEAF 112
F+E SA NV+ F
Sbjct: 140 VFDCKFIETSAALHHNVQALF 160
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y +L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 119
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQ+ + + +Y A+ LL +D+T +F+++ + W + H + I++VG K
Sbjct: 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKT 148
Query: 74 DLAHRRA------------VSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA 116
DL ++ V+ G++ A+ G + +LE SAR NV F + A
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y +L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 63 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 121
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y +L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y +L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ W+ + +++A PN+ +L+G +
Sbjct: 74 AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQI 132
Query: 74 DL------------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120
DL + + E+G++ AKE G ++E SA T + ++ F + IL
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 124
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 120
DL + ++ +G AKE G + +LE SA T + ++ F + +L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 121 Q 121
+
Sbjct: 178 K 178
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 78 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 136
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
AGQE + Y L+ + I ++ ++ +H PN+ I+LVGNK D
Sbjct: 61 AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 75 LAHRRAVSKE------------EGEQFAKENGLL-FLEASARTAQNVEEAF 112
L + ++E EG A G ++E SA+T V E F
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 86 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 86 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F+H+ + W + R H PN I+LVG K
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 69 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 127
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F+H+ + W + R H PN I+LVG K
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F+H+ + W + R H PN I+LVG K
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKL 269
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
+G + ++ Y + L+ +DI+R ET + + + Q PN ++LVG K D
Sbjct: 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143
Query: 75 L-----------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 107
L HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKC 73
AGQE + + Y L+ + + ++ ++ W+ + + H PN+ I+LV NK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 74 DL---AHRR---------AVSKEEGEQFA-KENGLLFLEASARTAQNVEEAF 112
DL H R V ++G A + +LE SA+T + V E F
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
+G + ++ Y + L+ +DI+R ET + + + Q PN ++LVG K D
Sbjct: 63 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122
Query: 75 L-----------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 107
L HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP---NMSIMLVGNKCDLAHRRAVSK 83
Y A L+VY + R++F+ SS+LE HA ++ +L+GNK D+A R V+K
Sbjct: 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147
Query: 84 EEGEQFAKENGLLFLEASA 102
EG A G LF E SA
Sbjct: 148 AEGVALAGRFGCLFFEVSA 166
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 59 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 117
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 86 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 144
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKC 73
AG E + + Y L+ + + +F ++ + W + R H PN I+LVG K
Sbjct: 62 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 120
Query: 74 DLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
DL + ++ +G AKE G + +LE SA T + ++ F
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74
+G + ++ Y + L+ +DI+R ET + + + Q PN ++LVG K D
Sbjct: 79 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 138
Query: 75 L-----------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 107
L HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 139 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 35 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR------------AV 81
L+ + + +F ++ + W + R H PN I+LVG K DL + +
Sbjct: 100 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 158
Query: 82 SKEEGEQFAKENGLL-FLEASARTAQNVEEAF 112
+ +G AKE G + +LE SA T + ++ F
Sbjct: 159 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 190
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNM 64
W + GQ FRS+ Y RG + + D RE N L + L+ + P
Sbjct: 71 IWDI--GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP-- 126
Query: 65 SIMLVGNKCDLAH 77
++++GNK DL +
Sbjct: 127 -VLVLGNKRDLPN 138
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNM 64
W + GQ FRS+ Y RG + + + D +E N L + L+ + P
Sbjct: 71 LWDI--GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-- 126
Query: 65 SIMLVGNKCDLA 76
++++GNK DL
Sbjct: 127 -VLVLGNKRDLP 137
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + R Y++ G + V D RE + L+ Q +++LV NK D
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 75 LAHRRAVSK 83
+ + VS+
Sbjct: 142 MPNAMPVSE 150
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETF----NHLSSWLEDARQHANPNM 64
W + GQ FRS+ Y RG + + + D +E N L + L+ + P
Sbjct: 80 LWDI--GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-- 135
Query: 65 SIMLVGNKCDLA 76
++++GNK DL
Sbjct: 136 -VLVLGNKRDLP 146
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
Query: 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQH 59
W + GQES RS +YY ++V D +TR E + L+ ED R+
Sbjct: 68 LMWDI--GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKA 123
Query: 60 ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
+++ NK D+ + ++ E QF K
Sbjct: 124 G-----LLIFANKQDV--KECMTVAEISQFLK 148
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
Query: 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQH 59
W + GQES RS +YY ++V D +TR E + L+ ED R+
Sbjct: 69 LMWDI--GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKA 124
Query: 60 ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
+++ NK D+ + ++ E QF K
Sbjct: 125 G-----LLIFANKQDV--KECMTVAEISQFLK 149
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQH 59
W + GQES RS +YY +LV D IT+ E + L+ ED R+
Sbjct: 63 LMWDI--GGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKA 118
Query: 60 ANPNMSIMLVGNKCDL 75
A +++ NK D+
Sbjct: 119 A-----VLIFANKQDM 129
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 117
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 118 IFANKQDLP 126
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
Query: 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQH 59
W + GQES RS +YY ++V D +TR E + L+ ED R+
Sbjct: 63 LMWDI--GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKA 118
Query: 60 ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
+++ NK D+ + ++ E QF K
Sbjct: 119 G-----LLIFANKQDV--KECMTVAEISQFLK 143
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREXRDAIIL 105
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 106 IFANKQDLP 114
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
Query: 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQH 59
W + GQES RS +YY ++V D +TR E + L+ ED R+
Sbjct: 63 LMWDI--GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKA 118
Query: 60 ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 91
+++ NK D+ + ++ E QF K
Sbjct: 119 G-----LLIFANKQDV--KECMTVAEISQFLK 143
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 118
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 119 IFANKQDLP 127
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 105
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 106 IFANKQDLP 114
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 105
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 106 IFANKQDLP 114
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 427
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 428 IFANKQDLP 436
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + + Y++ G + V D RE ++ L+ +++L+ NK D
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQD 129
Query: 75 LAHRRAVSK 83
L + A+S+
Sbjct: 130 LPNAMAISE 138
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
GQ+ R + R YY G + V D RE ++DAR+ + ++ I+
Sbjct: 70 GQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDDAREELHRMINEEELKDAIIL 122
Query: 68 LVGNKCDLAH 77
+ NK DL +
Sbjct: 123 VFANKQDLPN 132
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 16 GQESFRSITRSYYRGAAGALLVYD 39
GQ+ RS+ R YYR G + V D
Sbjct: 53 GQDRIRSLWRHYYRNTEGVIFVVD 76
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRR 43
GQ+ RS+ R YYR G + V D R
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRR 43
GQ+ RS+ R YYR G + V D R
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + R Y++ G + V D RE N L +++LV NK D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 75 LAH 77
L +
Sbjct: 278 LPN 280
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + R YY+ + V D R+ L +I+LV NK D
Sbjct: 70 GQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 75 LAHRRAVSK 83
L ++S+
Sbjct: 130 LPQAMSISE 138
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + R Y++ G + V D RE N L +++LV NK D
Sbjct: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 75 LAH 77
L +
Sbjct: 130 LPN 132
>pdb|4FU3|A Chain A, Cid Of Human Rprd1b
pdb|4FU3|B Chain B, Cid Of Human Rprd1b
Length = 135
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 49 LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-----------SKEEGEQFAKENGLLF 97
LS WL R+HA P +S+ + ++R+ SK +G +F +E +
Sbjct: 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85
Query: 98 LEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
++A + A+ +E K ++L QE ++
Sbjct: 86 VDAFSHVAREADEGCKKPLERLLNIWQERSV 116
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + R Y++ G + V D RE N L +++LV NK D
Sbjct: 69 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 128
Query: 75 LAH 77
L +
Sbjct: 129 LPN 131
>pdb|4HFG|A Chain A, Cid Of Human Rprd1b
pdb|4HFG|B Chain B, Cid Of Human Rprd1b
Length = 135
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 49 LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-----------SKEEGEQFAKENGLLF 97
LS WL R+HA P +S+ + ++R+ SK +G +F +E +
Sbjct: 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85
Query: 98 LEASARTAQNVEEAFIKTAAKILQNIQEGAL 128
++A + A+ +E K ++L QE ++
Sbjct: 86 VDAFSHVAREADEGCKKPLERLLNIWQERSV 116
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 74
GQ+ R + R Y++ G + V D RE N L +++LV NK D
Sbjct: 53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 75 LAH 77
L +
Sbjct: 113 LPN 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
G + R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 66 GLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 118
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 119 IFANKQDLP 127
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
G + R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 55 GLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 107
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 108 IFANKQDLP 116
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 16 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IM 67
G + R + R YY G G + V D R+ +++ARQ + ++ I+
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIIL 108
Query: 68 LVGNKCDLA 76
+ NK DL
Sbjct: 109 IFANKQDLP 117
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV 69
W L GQ S R R YY A + V D T ++ + S L Q + +LV
Sbjct: 67 WDL--GGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLV 124
Query: 70 -GNKCD 74
NK D
Sbjct: 125 FANKQD 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,536,890
Number of Sequences: 62578
Number of extensions: 159202
Number of successful extensions: 836
Number of sequences better than 100.0: 294
Number of HSP's better than 100.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 300
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)