Query 031249
Match_columns 163
No_of_seqs 125 out of 1363
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1E-32 2.2E-37 194.1 15.1 135 5-141 58-193 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 7.6E-33 1.7E-37 194.0 13.1 147 5-163 54-200 (200)
3 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.7E-31 3.7E-36 189.7 14.4 157 5-163 63-222 (222)
4 KOG0098 GTPase Rab2, small G p 100.0 1.9E-31 4E-36 186.1 14.2 134 5-140 55-189 (216)
5 KOG0078 GTP-binding protein SE 100.0 1.1E-30 2.4E-35 185.9 15.2 120 5-126 61-180 (207)
6 KOG0091 GTPase Rab39, small G 100.0 7.5E-29 1.6E-33 169.8 15.9 155 4-163 57-213 (213)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.9E-29 4.2E-34 177.3 13.3 124 5-130 71-195 (221)
8 KOG0088 GTPase Rab21, small G 100.0 3.8E-29 8.3E-34 170.6 12.8 122 6-129 63-184 (218)
9 KOG0079 GTP-binding protein H- 100.0 1.6E-28 3.5E-33 165.7 12.5 131 3-134 53-184 (198)
10 PLN03108 Rab family protein; P 100.0 1.9E-27 4.2E-32 174.2 18.9 155 6-162 56-210 (210)
11 KOG0093 GTPase Rab3, small G p 100.0 2E-28 4.3E-33 165.1 10.6 121 4-126 69-189 (193)
12 KOG0086 GTPase Rab4, small G p 100.0 6.9E-28 1.5E-32 163.6 13.0 155 5-161 58-214 (214)
13 KOG0080 GTPase Rab18, small G 100.0 3.4E-28 7.3E-33 166.2 11.3 120 3-122 56-176 (209)
14 cd04120 Rab12 Rab12 subfamily. 100.0 1E-26 2.3E-31 169.3 17.7 120 5-126 49-169 (202)
15 cd04121 Rab40 Rab40 subfamily. 100.0 7.5E-27 1.6E-31 168.5 16.0 117 5-124 55-171 (189)
16 PLN03110 Rab GTPase; Provision 100.0 1.8E-26 3.9E-31 169.7 18.1 155 5-163 61-215 (216)
17 cd04126 Rab20 Rab20 subfamily. 100.0 7.9E-27 1.7E-31 171.8 16.0 144 5-162 44-220 (220)
18 KOG0081 GTPase Rab27, small G 99.9 6E-27 1.3E-31 159.9 12.5 122 6-129 68-190 (219)
19 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.3E-26 7.2E-31 166.4 16.7 146 6-162 51-201 (201)
20 cd04144 Ras2 Ras2 subfamily. 99.9 4.9E-26 1.1E-30 164.2 16.1 138 6-163 48-188 (190)
21 PTZ00099 rab6; Provisional 99.9 6.2E-26 1.3E-30 162.0 16.1 115 6-122 30-144 (176)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 9.5E-26 2.1E-30 167.1 17.4 118 5-125 61-193 (232)
23 KOG0097 GTPase Rab14, small G 99.9 5.8E-26 1.3E-30 152.6 14.0 154 5-161 60-213 (215)
24 KOG0083 GTPase Rab26/Rab37, sm 99.9 5.1E-27 1.1E-31 156.1 8.4 120 5-126 47-166 (192)
25 cd04111 Rab39 Rab39 subfamily. 99.9 2.8E-25 6.1E-30 162.8 18.5 156 6-163 53-211 (211)
26 KOG0095 GTPase Rab30, small G 99.9 1.8E-26 4E-31 156.2 9.4 120 6-127 57-176 (213)
27 KOG0394 Ras-related GTPase [Ge 99.9 1.3E-25 2.7E-30 156.7 13.3 118 6-125 59-183 (210)
28 cd04125 RabA_like RabA-like su 99.9 8.3E-25 1.8E-29 157.4 17.3 120 6-127 50-169 (188)
29 cd04109 Rab28 Rab28 subfamily. 99.9 6.8E-25 1.5E-29 161.2 16.5 116 5-122 50-168 (215)
30 cd04133 Rop_like Rop subfamily 99.9 2.6E-25 5.7E-30 158.7 13.5 112 5-119 49-172 (176)
31 cd04122 Rab14 Rab14 subfamily. 99.9 6.3E-25 1.4E-29 154.9 15.2 114 6-121 52-165 (166)
32 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 5.2E-25 1.1E-29 158.0 14.3 111 6-119 54-179 (182)
33 cd04110 Rab35 Rab35 subfamily. 99.9 1.8E-24 3.8E-29 157.2 17.1 118 6-126 56-173 (199)
34 cd04112 Rab26 Rab26 subfamily. 99.9 1.9E-24 4E-29 156.1 16.4 118 6-125 51-168 (191)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.4E-24 3E-29 154.4 14.7 115 6-122 51-166 (172)
36 cd01875 RhoG RhoG subfamily. 99.9 1.5E-24 3.2E-29 156.7 14.4 113 6-121 52-178 (191)
37 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 5.2E-24 1.1E-28 157.0 16.7 117 6-125 50-181 (222)
38 cd04131 Rnd Rnd subfamily. Th 99.9 2E-24 4.3E-29 154.5 14.0 112 6-120 50-176 (178)
39 cd04127 Rab27A Rab27a subfamil 99.9 3.2E-24 6.8E-29 153.0 15.1 116 5-122 63-179 (180)
40 PTZ00369 Ras-like protein; Pro 99.9 6.7E-24 1.5E-28 152.9 15.1 120 6-127 54-174 (189)
41 cd04132 Rho4_like Rho4-like su 99.9 1.4E-23 3E-28 150.7 15.6 118 6-126 50-173 (187)
42 cd04117 Rab15 Rab15 subfamily. 99.9 1.3E-23 2.8E-28 147.7 14.7 111 6-118 50-160 (161)
43 cd01867 Rab8_Rab10_Rab13_like 99.9 1.7E-23 3.6E-28 147.8 15.0 114 6-121 53-166 (167)
44 cd01865 Rab3 Rab3 subfamily. 99.9 2E-23 4.2E-28 147.2 15.3 114 5-120 50-163 (165)
45 cd01873 RhoBTB RhoBTB subfamil 99.9 1.2E-23 2.6E-28 152.5 13.6 108 6-118 67-194 (195)
46 PF00071 Ras: Ras family; Int 99.9 2.1E-23 4.5E-28 146.2 14.4 114 5-120 48-161 (162)
47 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-23 2.9E-28 149.8 13.3 111 6-119 50-174 (175)
48 cd04175 Rap1 Rap1 subgroup. T 99.9 1.8E-23 3.8E-28 147.0 13.7 113 6-120 50-163 (164)
49 cd04136 Rap_like Rap-like subf 99.9 2E-23 4.3E-28 146.3 13.9 112 6-119 50-162 (163)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.6E-23 5.7E-28 146.4 14.4 113 6-120 52-164 (166)
51 smart00176 RAN Ran (Ras-relate 99.9 2.8E-23 6.2E-28 151.0 14.7 113 5-122 44-156 (200)
52 PLN03118 Rab family protein; P 99.9 8.1E-23 1.8E-27 149.7 17.1 120 4-123 59-180 (211)
53 cd04118 Rab24 Rab24 subfamily. 99.9 1.4E-22 3E-27 146.2 17.3 115 7-124 52-170 (193)
54 KOG0395 Ras-related GTPase [Ge 99.9 4.2E-23 9.1E-28 149.4 14.4 123 2-124 46-169 (196)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.9E-23 1.3E-27 147.4 14.4 113 6-121 50-167 (182)
56 cd04176 Rap2 Rap2 subgroup. T 99.9 4.8E-23 1E-27 144.6 13.6 112 6-119 50-162 (163)
57 cd01871 Rac1_like Rac1-like su 99.9 5.7E-23 1.2E-27 146.4 13.5 110 6-118 50-173 (174)
58 cd01866 Rab2 Rab2 subfamily. 99.9 1.5E-22 3.4E-27 143.0 15.2 115 5-121 53-167 (168)
59 cd04119 RJL RJL (RabJ-Like) su 99.9 1.6E-22 3.6E-27 141.9 14.4 113 6-120 50-167 (168)
60 cd04134 Rho3 Rho3 subfamily. 99.9 8.3E-23 1.8E-27 147.3 13.1 113 5-120 48-174 (189)
61 cd01868 Rab11_like Rab11-like. 99.9 2.6E-22 5.7E-27 141.1 15.0 112 6-119 53-164 (165)
62 cd04106 Rab23_lke Rab23-like s 99.9 2.3E-22 5E-27 140.8 14.4 111 5-118 51-161 (162)
63 PLN03071 GTP-binding nuclear p 99.9 1.5E-22 3.2E-27 149.2 13.7 113 5-122 62-174 (219)
64 smart00173 RAS Ras subfamily o 99.9 3E-22 6.5E-27 140.6 14.3 113 6-120 49-162 (164)
65 smart00174 RHO Rho (Ras homolo 99.9 1.5E-22 3.2E-27 143.5 12.9 112 6-120 47-172 (174)
66 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.5E-22 5.5E-27 140.8 13.7 112 6-119 51-163 (164)
67 cd04113 Rab4 Rab4 subfamily. 99.9 3.3E-22 7.2E-27 140.0 14.3 112 5-118 49-160 (161)
68 cd04140 ARHI_like ARHI subfami 99.9 2.1E-22 4.6E-27 141.9 13.4 110 6-117 50-162 (165)
69 cd01864 Rab19 Rab19 subfamily. 99.9 5.3E-22 1.1E-26 139.7 14.5 111 6-118 53-164 (165)
70 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 7.7E-22 1.7E-26 140.0 15.1 114 6-121 50-166 (170)
71 cd00877 Ran Ran (Ras-related n 99.9 6.4E-22 1.4E-26 139.8 13.9 112 5-121 49-160 (166)
72 cd04101 RabL4 RabL4 (Rab-like4 99.9 9.2E-22 2E-26 138.1 14.5 112 5-119 52-163 (164)
73 cd04116 Rab9 Rab9 subfamily. 99.9 1.3E-21 2.8E-26 138.3 14.5 110 6-118 55-169 (170)
74 cd04124 RabL2 RabL2 subfamily. 99.9 1.1E-21 2.4E-26 137.8 14.1 111 6-122 50-160 (161)
75 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.2E-21 2.7E-26 136.6 14.0 111 6-119 50-161 (162)
76 smart00175 RAB Rab subfamily o 99.9 2E-21 4.4E-26 136.0 14.8 115 5-121 49-163 (164)
77 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.7E-21 3.7E-26 137.9 14.2 113 5-119 51-168 (170)
78 cd04177 RSR1 RSR1 subgroup. R 99.9 1.7E-21 3.7E-26 137.6 14.0 114 5-120 49-164 (168)
79 cd01860 Rab5_related Rab5-rela 99.9 3E-21 6.6E-26 135.2 14.9 113 5-119 50-162 (163)
80 cd04143 Rhes_like Rhes_like su 99.9 2.7E-21 5.9E-26 144.8 15.3 138 4-143 45-192 (247)
81 cd04146 RERG_RasL11_like RERG/ 99.9 1.8E-21 3.8E-26 137.0 13.2 113 6-120 48-164 (165)
82 cd01861 Rab6 Rab6 subfamily. 99.9 3.2E-21 7E-26 134.8 14.3 111 6-118 50-160 (161)
83 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.5E-21 5.4E-26 137.5 13.4 109 6-117 49-171 (173)
84 cd04123 Rab21 Rab21 subfamily. 99.9 4.9E-21 1.1E-25 133.6 14.6 112 6-119 50-161 (162)
85 cd04103 Centaurin_gamma Centau 99.9 2.6E-21 5.6E-26 135.9 12.6 106 6-118 48-157 (158)
86 PLN00223 ADP-ribosylation fact 99.9 5.5E-21 1.2E-25 137.0 12.9 114 4-121 60-179 (181)
87 cd04149 Arf6 Arf6 subfamily. 99.9 3.2E-21 6.9E-26 136.6 11.4 110 4-117 52-167 (168)
88 KOG4252 GTP-binding protein [S 99.9 7.4E-22 1.6E-26 137.5 7.4 132 4-138 68-200 (246)
89 cd04148 RGK RGK subfamily. Th 99.9 1.9E-20 4.1E-25 138.2 14.8 118 6-127 51-170 (221)
90 cd04158 ARD1 ARD1 subfamily. 99.9 9.8E-21 2.1E-25 134.1 12.3 115 4-122 42-163 (169)
91 cd04142 RRP22 RRP22 subfamily. 99.9 1.7E-20 3.7E-25 136.3 13.5 118 6-125 50-179 (198)
92 KOG0393 Ras-related small GTPa 99.9 5E-21 1.1E-25 136.9 10.2 116 6-124 54-183 (198)
93 cd04135 Tc10 TC10 subfamily. 99.9 2.2E-20 4.8E-25 132.3 13.5 110 7-119 50-173 (174)
94 cd01862 Rab7 Rab7 subfamily. 99.9 5.4E-20 1.2E-24 129.8 15.1 116 6-123 50-170 (172)
95 cd04114 Rab30 Rab30 subfamily. 99.8 5.9E-20 1.3E-24 129.5 14.9 112 6-119 57-168 (169)
96 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.1E-20 4.6E-25 131.2 12.3 110 4-117 43-158 (159)
97 cd01863 Rab18 Rab18 subfamily. 99.8 7.3E-20 1.6E-24 128.0 14.3 111 5-118 49-160 (161)
98 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5E-21 1.1E-25 135.1 8.4 111 4-117 43-163 (164)
99 cd04139 RalA_RalB RalA/RalB su 99.8 9.3E-20 2E-24 127.5 14.8 113 6-120 49-162 (164)
100 smart00177 ARF ARF-like small 99.8 4.3E-20 9.3E-25 131.6 12.9 112 4-119 56-173 (175)
101 PTZ00133 ADP-ribosylation fact 99.8 6.7E-20 1.5E-24 131.4 13.4 116 4-123 60-181 (182)
102 cd04129 Rho2 Rho2 subfamily. 99.8 1E-19 2.2E-24 130.9 14.0 113 7-122 51-175 (187)
103 cd01870 RhoA_like RhoA-like su 99.8 1.5E-19 3.2E-24 128.2 14.2 111 6-119 50-174 (175)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.6E-19 3.4E-24 129.5 13.9 117 4-124 51-174 (183)
105 cd04154 Arl2 Arl2 subfamily. 99.8 8.9E-20 1.9E-24 129.5 12.2 110 4-117 57-172 (173)
106 cd01892 Miro2 Miro2 subfamily. 99.8 6.2E-20 1.3E-24 130.1 11.0 111 6-120 55-166 (169)
107 cd04147 Ras_dva Ras-dva subfam 99.8 2.6E-19 5.7E-24 129.9 14.4 114 5-120 47-163 (198)
108 cd04137 RheB Rheb (Ras Homolog 99.8 4.3E-19 9.3E-24 126.5 15.1 116 6-123 50-166 (180)
109 cd00876 Ras Ras family. The R 99.8 3E-19 6.4E-24 124.3 13.6 112 5-118 47-159 (160)
110 cd00154 Rab Rab family. Rab G 99.8 3.7E-19 8E-24 123.1 13.6 110 5-116 49-158 (159)
111 cd04157 Arl6 Arl6 subfamily. 99.8 3.6E-19 7.8E-24 124.5 11.8 110 4-117 44-161 (162)
112 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.1E-19 2.4E-24 128.5 8.6 110 4-117 42-166 (167)
113 cd01893 Miro1 Miro1 subfamily. 99.8 1.4E-18 3E-23 122.6 13.2 113 6-121 48-165 (166)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 9.6E-19 2.1E-23 124.4 12.3 110 4-117 58-173 (174)
115 cd04151 Arl1 Arl1 subfamily. 99.8 3.3E-19 7.1E-24 124.7 9.2 110 4-117 42-157 (158)
116 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.5E-18 3.3E-23 122.0 12.0 111 3-117 48-166 (167)
117 cd00879 Sar1 Sar1 subfamily. 99.8 1.5E-18 3.4E-23 124.7 12.0 112 3-118 61-189 (190)
118 cd00157 Rho Rho (Ras homology) 99.8 3.4E-18 7.4E-23 120.5 12.5 109 6-117 49-170 (171)
119 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.9E-18 4.1E-23 120.7 10.4 109 5-117 44-159 (160)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.7E-18 3.7E-23 120.8 9.9 110 4-117 42-157 (158)
121 cd04102 RabL3 RabL3 (Rab-like3 99.8 3.7E-18 8.1E-23 124.3 11.7 99 6-106 55-176 (202)
122 smart00178 SAR Sar1p-like memb 99.8 6E-18 1.3E-22 121.5 11.8 111 4-118 60-183 (184)
123 PF00025 Arf: ADP-ribosylation 99.8 1.3E-17 2.7E-22 119.0 12.8 113 3-119 56-175 (175)
124 cd01890 LepA LepA subfamily. 99.8 1.9E-17 4.1E-22 117.7 11.8 106 6-119 68-176 (179)
125 PTZ00132 GTP-binding nuclear p 99.7 6.9E-17 1.5E-21 118.5 14.2 111 6-121 59-169 (215)
126 KOG0070 GTP-binding ADP-ribosy 99.7 1.5E-16 3.2E-21 111.6 11.6 116 2-121 58-179 (181)
127 PLN00023 GTP-binding protein; 99.7 1E-16 2.2E-21 123.1 11.1 88 6-95 84-189 (334)
128 KOG0073 GTP-binding ADP-ribosy 99.7 4.8E-16 1E-20 107.0 12.7 117 2-122 57-180 (185)
129 cd04159 Arl10_like Arl10-like 99.7 2.3E-16 5E-21 109.2 11.0 110 4-117 43-158 (159)
130 cd01898 Obg Obg subfamily. Th 99.7 2.8E-16 6E-21 110.7 10.5 110 6-118 49-169 (170)
131 cd04155 Arl3 Arl3 subfamily. 99.7 4.3E-16 9.3E-21 110.2 11.1 108 3-117 56-172 (173)
132 KOG0075 GTP-binding ADP-ribosy 99.7 9E-17 2E-21 108.8 7.0 114 4-121 64-183 (186)
133 KOG4423 GTP-binding protein-li 99.7 5.8E-17 1.3E-21 113.7 5.9 134 5-140 75-214 (229)
134 PRK12299 obgE GTPase CgtA; Rev 99.7 9.7E-16 2.1E-20 119.3 12.5 116 4-121 205-329 (335)
135 cd01897 NOG NOG1 is a nucleola 99.7 5.3E-16 1.1E-20 109.1 10.0 111 4-119 46-167 (168)
136 KOG3883 Ras family small GTPas 99.7 1.2E-15 2.6E-20 104.1 10.7 120 6-127 61-182 (198)
137 cd04171 SelB SelB subfamily. 99.6 2.7E-15 5.8E-20 104.8 11.2 106 4-117 50-163 (164)
138 TIGR02528 EutP ethanolamine ut 99.6 1.8E-15 4E-20 103.8 8.6 98 8-116 38-141 (142)
139 cd01879 FeoB Ferrous iron tran 99.6 8.1E-15 1.8E-19 101.8 11.6 106 4-118 42-155 (158)
140 COG1100 GTPase SAR1 and relate 99.6 2E-14 4.4E-19 105.3 13.7 120 6-127 55-192 (219)
141 KOG1673 Ras GTPases [General f 99.6 4.8E-15 1E-19 101.4 9.3 114 6-122 70-188 (205)
142 cd01878 HflX HflX subfamily. 99.6 5.7E-15 1.2E-19 107.4 10.4 105 6-118 90-203 (204)
143 cd00882 Ras_like_GTPase Ras-li 99.6 3.2E-14 6.9E-19 96.8 12.8 111 4-116 44-156 (157)
144 KOG0076 GTP-binding ADP-ribosy 99.6 4.3E-15 9.2E-20 103.2 7.5 116 3-122 67-189 (197)
145 KOG0071 GTP-binding ADP-ribosy 99.6 1.6E-14 3.5E-19 97.2 9.5 114 2-119 58-177 (180)
146 cd01891 TypA_BipA TypA (tyrosi 99.6 1.1E-14 2.3E-19 105.3 9.5 101 4-110 64-172 (194)
147 cd01881 Obg_like The Obg-like 99.6 1.3E-14 2.8E-19 102.5 9.4 113 4-118 43-175 (176)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 3.3E-14 7.2E-19 99.8 11.0 110 4-119 49-165 (168)
149 COG2229 Predicted GTPase [Gene 99.6 5.7E-14 1.2E-18 98.6 11.7 106 8-118 69-176 (187)
150 TIGR02729 Obg_CgtA Obg family 99.6 3.5E-14 7.5E-19 110.5 11.5 112 5-119 205-328 (329)
151 TIGR00157 ribosome small subun 99.6 1.4E-14 3.1E-19 108.4 8.8 96 18-117 24-120 (245)
152 PRK15467 ethanolamine utilizat 99.6 4.1E-14 9E-19 99.3 9.8 102 9-122 41-149 (158)
153 TIGR00231 small_GTP small GTP- 99.6 6.9E-14 1.5E-18 96.2 10.5 109 5-116 50-160 (161)
154 TIGR01393 lepA GTP-binding pro 99.5 5.2E-14 1.1E-18 117.0 11.5 106 6-119 71-179 (595)
155 PRK04213 GTP-binding protein; 99.5 9.1E-15 2E-19 106.1 5.7 106 6-120 53-192 (201)
156 cd01888 eIF2_gamma eIF2-gamma 99.5 5.8E-14 1.3E-18 102.3 9.7 107 5-119 83-198 (203)
157 PRK03003 GTP-binding protein D 99.5 4.4E-14 9.6E-19 114.9 9.9 117 3-125 257-387 (472)
158 TIGR03156 GTP_HflX GTP-binding 99.5 1.7E-13 3.6E-18 107.5 12.4 107 3-118 235-350 (351)
159 cd01894 EngA1 EngA1 subfamily. 99.5 1E-13 2.2E-18 96.0 9.2 104 4-118 44-156 (157)
160 KOG0072 GTP-binding ADP-ribosy 99.5 1.1E-13 2.3E-18 93.7 8.1 117 2-122 59-181 (182)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.6E-13 3.4E-18 110.6 10.6 108 3-124 249-364 (442)
162 cd00881 GTP_translation_factor 99.5 2.8E-13 6.1E-18 96.6 10.7 109 5-119 62-186 (189)
163 PRK12297 obgE GTPase CgtA; Rev 99.5 8.7E-13 1.9E-17 105.5 13.3 113 4-122 205-329 (424)
164 PRK03003 GTP-binding protein D 99.5 2.7E-13 5.9E-18 110.3 10.3 108 3-121 84-200 (472)
165 TIGR03594 GTPase_EngA ribosome 99.5 4E-13 8.6E-18 108.0 11.2 114 3-123 218-347 (429)
166 TIGR00487 IF-2 translation ini 99.5 3.9E-13 8.6E-18 111.4 11.2 100 6-117 136-247 (587)
167 PRK05291 trmE tRNA modificatio 99.5 2.2E-13 4.7E-18 110.1 8.8 103 3-121 261-371 (449)
168 PRK05433 GTP-binding protein L 99.5 6.5E-13 1.4E-17 110.6 11.7 108 5-120 74-184 (600)
169 TIGR00436 era GTP-binding prot 99.4 1.2E-12 2.6E-17 99.4 11.1 106 6-119 49-163 (270)
170 PRK05306 infB translation init 99.4 8.3E-13 1.8E-17 112.2 11.0 103 4-118 336-450 (787)
171 KOG0074 GTP-binding ADP-ribosy 99.4 1.8E-13 3.9E-18 92.4 5.5 110 6-117 61-176 (185)
172 CHL00189 infB translation init 99.4 1.2E-12 2.5E-17 110.6 11.7 103 5-119 295-409 (742)
173 TIGR00437 feoB ferrous iron tr 99.4 6.4E-13 1.4E-17 110.5 10.0 108 3-119 39-154 (591)
174 PRK15494 era GTPase Era; Provi 99.4 1.3E-12 2.7E-17 102.2 10.9 108 3-120 98-216 (339)
175 cd01889 SelB_euk SelB subfamil 99.4 1.4E-12 3E-17 94.1 10.2 111 4-120 67-186 (192)
176 COG0532 InfB Translation initi 99.4 2.5E-12 5.4E-17 103.3 12.4 108 8-122 56-172 (509)
177 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.2E-12 2.6E-17 90.5 9.5 101 4-119 48-156 (157)
178 KOG0096 GTPase Ran/TC4/GSP1 (n 99.4 1.4E-13 3.1E-18 97.0 4.6 112 5-121 59-170 (216)
179 PRK11058 GTPase HflX; Provisio 99.4 4E-12 8.7E-17 102.0 12.6 110 6-122 246-364 (426)
180 PRK12296 obgE GTPase CgtA; Rev 99.4 4.2E-12 9.2E-17 103.0 12.2 117 4-123 205-343 (500)
181 TIGR00491 aIF-2 translation in 99.4 5E-12 1.1E-16 104.9 12.9 108 7-123 71-219 (590)
182 TIGR00475 selB selenocysteine- 99.4 3.3E-12 7.1E-17 106.2 11.7 109 4-121 49-167 (581)
183 PF00009 GTP_EFTU: Elongation 99.4 2.9E-12 6.4E-17 92.2 10.1 107 8-119 71-186 (188)
184 cd00880 Era_like Era (E. coli 99.4 2.3E-12 5.1E-17 88.5 9.0 109 4-118 44-162 (163)
185 cd01895 EngA2 EngA2 subfamily. 99.4 1.3E-11 2.8E-16 86.5 11.5 110 3-118 48-173 (174)
186 TIGR00483 EF-1_alpha translati 99.4 3.5E-12 7.5E-17 102.6 9.5 106 4-113 84-200 (426)
187 TIGR03680 eif2g_arch translati 99.4 5.1E-12 1.1E-16 101.1 10.3 111 5-119 80-195 (406)
188 PF08477 Miro: Miro-like prote 99.4 3E-12 6.5E-17 85.1 7.6 66 6-74 51-119 (119)
189 PRK12298 obgE GTPase CgtA; Rev 99.3 2.8E-11 6.1E-16 96.1 12.1 114 6-122 208-335 (390)
190 TIGR03594 GTPase_EngA ribosome 99.3 2.3E-11 5E-16 97.8 11.4 108 3-121 45-161 (429)
191 PRK09518 bifunctional cytidyla 99.3 3.1E-11 6.7E-16 102.7 12.0 118 3-128 496-629 (712)
192 TIGR01394 TypA_BipA GTP-bindin 99.3 1.7E-11 3.8E-16 101.9 10.1 111 4-120 63-191 (594)
193 PRK04000 translation initiatio 99.3 2.4E-11 5.3E-16 97.3 10.6 106 6-119 86-200 (411)
194 PRK00093 GTP-binding protein D 99.3 2.8E-11 6.1E-16 97.5 10.9 102 3-117 47-159 (435)
195 PRK00093 GTP-binding protein D 99.3 2E-11 4.4E-16 98.4 10.0 112 3-122 219-346 (435)
196 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.4E-11 5.2E-16 88.9 9.5 104 3-111 75-185 (208)
197 cd04163 Era Era subfamily. Er 99.3 4.4E-11 9.6E-16 83.0 10.1 108 5-118 51-167 (168)
198 PRK00454 engB GTP-binding prot 99.3 6.2E-11 1.4E-15 85.3 10.8 108 6-119 71-193 (196)
199 PRK00089 era GTPase Era; Revie 99.3 5.7E-11 1.2E-15 91.1 11.0 109 7-119 53-170 (292)
200 PRK09518 bifunctional cytidyla 99.3 3.8E-11 8.3E-16 102.1 10.9 107 4-121 322-437 (712)
201 PRK10512 selenocysteinyl-tRNA- 99.3 8.7E-11 1.9E-15 98.2 12.1 107 4-119 50-165 (614)
202 KOG1145 Mitochondrial translat 99.2 1.2E-10 2.7E-15 93.9 12.0 110 8-124 202-320 (683)
203 PRK12317 elongation factor 1-a 99.2 3.4E-11 7.4E-16 96.9 8.8 106 4-113 83-198 (425)
204 PRK04004 translation initiatio 99.2 1.5E-10 3.2E-15 96.3 12.5 106 7-121 73-219 (586)
205 cd04105 SR_beta Signal recogni 99.2 8.4E-11 1.8E-15 85.7 9.5 72 4-77 47-123 (203)
206 cd01883 EF1_alpha Eukaryotic e 99.2 4.2E-11 9.1E-16 88.3 7.4 103 3-109 75-194 (219)
207 PRK10218 GTP-binding protein; 99.2 1.1E-10 2.4E-15 97.2 10.6 111 3-119 66-194 (607)
208 cd04168 TetM_like Tet(M)-like 99.2 2.2E-10 4.8E-15 85.4 11.0 67 4-76 63-129 (237)
209 PF10662 PduV-EutP: Ethanolami 99.2 1E-10 2.2E-15 80.2 8.1 99 10-116 39-142 (143)
210 PF02421 FeoB_N: Ferrous iron 99.2 4.8E-11 1E-15 83.3 6.5 104 3-115 45-156 (156)
211 COG1159 Era GTPase [General fu 99.2 1.6E-10 3.6E-15 87.2 9.8 114 4-121 51-173 (298)
212 PRK14845 translation initiatio 99.2 4.2E-10 9.1E-15 98.1 13.4 106 7-121 528-674 (1049)
213 TIGR03598 GTPase_YsxC ribosome 99.2 1.1E-10 2.4E-15 83.3 8.0 98 6-109 65-179 (179)
214 cd01855 YqeH YqeH. YqeH is an 99.2 2.8E-10 6.1E-15 82.0 9.5 96 18-120 22-125 (190)
215 cd01896 DRG The developmentall 99.2 7.9E-10 1.7E-14 82.3 11.7 109 2-119 44-225 (233)
216 cd01884 EF_Tu EF-Tu subfamily. 99.1 8.6E-10 1.9E-14 80.0 11.2 99 7-109 65-172 (195)
217 PRK09554 feoB ferrous iron tra 99.1 5.6E-10 1.2E-14 95.4 11.7 108 3-119 48-167 (772)
218 cd01859 MJ1464 MJ1464. This f 99.1 3.2E-10 7E-15 79.1 7.2 95 20-120 2-96 (156)
219 PRK12289 GTPase RsgA; Reviewed 99.1 4.3E-10 9.4E-15 88.2 8.6 95 18-117 77-172 (352)
220 cd04167 Snu114p Snu114p subfam 99.1 3.8E-10 8.2E-15 82.8 7.7 65 6-76 72-136 (213)
221 PRK09866 hypothetical protein; 99.1 2E-09 4.3E-14 89.2 12.1 110 6-117 229-350 (741)
222 cd04165 GTPBP1_like GTPBP1-lik 99.1 2.4E-09 5.1E-14 79.3 11.5 105 6-116 85-219 (224)
223 COG0481 LepA Membrane GTPase L 99.1 1.3E-09 2.9E-14 86.8 10.4 109 4-119 73-185 (603)
224 PRK00098 GTPase RsgA; Reviewed 99.1 8.2E-10 1.8E-14 85.0 8.6 95 18-116 61-163 (298)
225 KOG0462 Elongation factor-type 99.1 1.8E-09 3.8E-14 87.3 10.7 108 5-119 123-234 (650)
226 cd01885 EF2 EF2 (for archaea a 99.0 1.3E-09 2.8E-14 80.5 8.6 67 6-76 72-138 (222)
227 cd00066 G-alpha G protein alph 99.0 2E-09 4.4E-14 83.5 10.1 119 3-123 159-314 (317)
228 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.1E-09 2.3E-14 84.0 8.2 85 28-117 76-161 (287)
229 PRK12736 elongation factor Tu; 99.0 2.8E-09 6E-14 85.1 10.8 95 6-106 76-179 (394)
230 PLN00043 elongation factor 1-a 99.0 1.4E-09 3E-14 88.1 8.7 98 8-110 86-203 (447)
231 TIGR00485 EF-Tu translation el 99.0 2.8E-09 6E-14 85.1 10.3 95 6-106 76-179 (394)
232 TIGR03597 GTPase_YqeH ribosome 99.0 2.4E-09 5.2E-14 84.5 9.6 95 17-118 50-151 (360)
233 KOG1707 Predicted Ras related/ 99.0 6.2E-10 1.3E-14 90.3 6.0 115 5-121 56-176 (625)
234 PTZ00327 eukaryotic translatio 99.0 7E-09 1.5E-13 84.1 11.5 109 8-118 118-231 (460)
235 PRK12288 GTPase RsgA; Reviewed 99.0 3.6E-09 7.7E-14 83.0 9.1 87 28-117 118-205 (347)
236 COG1160 Predicted GTPases [Gen 99.0 8.6E-09 1.9E-13 82.0 11.0 121 3-129 224-360 (444)
237 cd01876 YihA_EngB The YihA (En 99.0 5.8E-09 1.3E-13 72.5 8.9 105 6-118 46-169 (170)
238 smart00275 G_alpha G protein a 99.0 9.7E-09 2.1E-13 80.5 10.9 121 2-124 181-338 (342)
239 cd04169 RF3 RF3 subfamily. Pe 98.9 7.7E-09 1.7E-13 78.5 9.7 69 3-77 69-137 (267)
240 PRK12735 elongation factor Tu; 98.9 9.8E-09 2.1E-13 82.0 10.5 96 8-107 76-180 (396)
241 COG0486 ThdF Predicted GTPase 98.9 6.5E-09 1.4E-13 82.8 9.0 109 2-122 262-378 (454)
242 COG1160 Predicted GTPases [Gen 98.9 1.3E-08 2.9E-13 80.9 10.7 106 4-120 50-165 (444)
243 PRK00741 prfC peptide chain re 98.9 1.7E-08 3.6E-13 83.3 11.4 67 4-76 78-144 (526)
244 TIGR02034 CysN sulfate adenyly 98.9 9.8E-09 2.1E-13 82.3 9.4 102 5-111 80-188 (406)
245 PRK13768 GTPase; Provisional 98.9 1.4E-08 3.1E-13 76.4 9.4 109 6-119 98-246 (253)
246 PRK05124 cysN sulfate adenylyl 98.9 7.5E-09 1.6E-13 84.4 8.0 103 5-112 107-217 (474)
247 PRK13351 elongation factor G; 98.9 2.3E-08 5E-13 85.0 11.2 68 4-77 72-139 (687)
248 KOG0077 Vesicle coat complex C 98.9 9.2E-09 2E-13 71.5 7.0 113 2-118 61-191 (193)
249 CHL00071 tufA elongation facto 98.8 2.5E-08 5.5E-13 80.0 9.9 98 7-108 75-181 (409)
250 PRK00049 elongation factor Tu; 98.8 6.9E-08 1.5E-12 77.2 11.2 97 7-107 75-180 (396)
251 COG4917 EutP Ethanolamine util 98.8 2E-08 4.4E-13 66.7 6.6 98 11-117 41-143 (148)
252 cd01886 EF-G Elongation factor 98.8 2E-08 4.2E-13 76.4 7.5 67 7-77 64-130 (270)
253 PRK05506 bifunctional sulfate 98.8 4.2E-08 9.1E-13 82.7 10.0 100 6-110 105-211 (632)
254 COG2262 HflX GTPases [General 98.8 2E-07 4.4E-12 73.3 12.8 120 5-132 240-368 (411)
255 PLN03127 Elongation factor Tu; 98.8 6E-08 1.3E-12 78.6 9.9 94 6-103 123-225 (447)
256 PRK12740 elongation factor G; 98.8 9.1E-08 2E-12 81.2 11.0 67 4-76 59-125 (668)
257 cd01858 NGP_1 NGP-1. Autoanti 98.7 5.9E-08 1.3E-12 67.8 7.6 92 25-119 3-94 (157)
258 cd01856 YlqF YlqF. Proteins o 98.7 6.5E-08 1.4E-12 68.6 7.6 98 15-120 3-101 (171)
259 PTZ00141 elongation factor 1- 98.7 1.2E-07 2.7E-12 76.8 9.2 100 8-110 86-203 (446)
260 KOG1489 Predicted GTP-binding 98.7 1.8E-07 3.9E-12 71.4 9.1 106 9-117 246-364 (366)
261 cd04170 EF-G_bact Elongation f 98.7 2.8E-07 6E-12 69.9 10.1 86 4-97 63-148 (268)
262 cd01899 Ygr210 Ygr210 subfamil 98.7 1.8E-07 3.8E-12 72.7 9.0 53 63-119 214-268 (318)
263 TIGR00484 EF-G translation elo 98.7 1.5E-07 3.3E-12 80.1 9.2 94 4-105 74-171 (689)
264 cd01849 YlqF_related_GTPase Yl 98.6 3.4E-07 7.4E-12 63.8 9.4 87 32-122 1-87 (155)
265 TIGR03596 GTPase_YlqF ribosome 98.6 2.1E-07 4.5E-12 71.0 8.9 102 10-122 3-105 (276)
266 PF09439 SRPRB: Signal recogni 98.6 1.7E-07 3.7E-12 67.0 7.8 72 4-77 48-126 (181)
267 PLN03126 Elongation factor Tu; 98.6 2.1E-07 4.6E-12 76.0 9.0 99 4-108 143-250 (478)
268 KOG1144 Translation initiation 98.6 2.6E-07 5.6E-12 77.4 9.4 112 7-128 542-695 (1064)
269 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 4E-07 8.7E-12 67.6 8.8 118 3-124 46-180 (232)
270 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.7E-07 5.9E-12 63.4 6.8 77 25-107 6-84 (141)
271 PRK12739 elongation factor G; 98.6 1.1E-06 2.3E-11 75.1 11.5 68 4-77 72-139 (691)
272 TIGR00503 prfC peptide chain r 98.5 3.7E-07 8E-12 75.4 8.5 69 3-77 78-146 (527)
273 COG2895 CysN GTPases - Sulfate 98.5 8.8E-07 1.9E-11 68.7 8.7 97 8-109 87-192 (431)
274 PRK13796 GTPase YqeH; Provisio 98.5 1.4E-06 3E-11 69.0 10.2 93 18-118 57-157 (365)
275 PRK09563 rbgA GTPase YlqF; Rev 98.5 8.2E-07 1.8E-11 68.1 8.5 102 10-122 6-108 (287)
276 KOG1423 Ras-like GTPase ERA [C 98.5 1.3E-06 2.8E-11 66.7 9.0 114 4-120 117-271 (379)
277 cd04104 p47_IIGP_like p47 (47- 98.4 2.3E-06 4.9E-11 62.1 9.5 110 6-124 53-188 (197)
278 COG0536 Obg Predicted GTPase [ 98.4 1.5E-06 3.3E-11 67.1 8.7 117 6-124 208-337 (369)
279 PRK01889 GTPase RsgA; Reviewed 98.4 1.6E-06 3.5E-11 68.5 8.3 83 28-116 110-193 (356)
280 COG1217 TypA Predicted membran 98.4 1.8E-06 3.9E-11 69.2 7.9 112 2-119 65-194 (603)
281 COG5257 GCD11 Translation init 98.4 1.2E-06 2.6E-11 67.3 6.6 111 10-122 89-204 (415)
282 KOG0090 Signal recognition par 98.4 8.2E-06 1.8E-10 59.2 10.5 73 3-77 80-159 (238)
283 TIGR00101 ureG urease accessor 98.3 3.3E-06 7.1E-11 61.5 7.4 79 31-119 113-195 (199)
284 KOG0082 G-protein alpha subuni 98.3 5.9E-06 1.3E-10 64.6 9.0 122 2-125 192-349 (354)
285 COG0218 Predicted GTPase [Gene 98.3 1E-05 2.3E-10 58.3 9.3 108 7-121 72-198 (200)
286 COG1084 Predicted GTPase [Gene 98.3 1E-05 2.2E-10 62.3 9.5 112 4-121 214-337 (346)
287 COG1162 Predicted GTPases [Gen 98.2 1.5E-05 3.3E-10 60.9 9.0 98 18-118 67-165 (301)
288 COG0370 FeoB Fe2+ transport sy 98.2 1.3E-05 2.9E-10 66.8 9.3 106 3-117 48-161 (653)
289 COG5256 TEF1 Translation elong 98.2 7E-06 1.5E-10 64.9 7.2 104 7-111 85-202 (428)
290 COG1163 DRG Predicted GTPase [ 98.2 4.5E-05 9.8E-10 58.8 11.1 50 64-120 240-289 (365)
291 PF03029 ATP_bind_1: Conserved 98.1 2.8E-06 6E-11 63.5 4.1 110 6-119 92-236 (238)
292 PRK00007 elongation factor G; 98.1 2E-05 4.4E-10 67.3 9.8 92 8-105 76-171 (693)
293 PF00503 G-alpha: G-protein al 98.1 1.9E-05 4.1E-10 63.1 8.7 115 3-119 234-389 (389)
294 cd01850 CDC_Septin CDC/Septin. 98.1 1.3E-05 2.8E-10 61.2 7.4 74 26-104 108-186 (276)
295 PRK09435 membrane ATPase/prote 98.1 2.8E-05 6E-10 60.8 9.3 113 7-130 149-270 (332)
296 TIGR00073 hypB hydrogenase acc 98.1 2.4E-05 5.2E-10 57.1 8.4 81 30-118 123-205 (207)
297 KOG1191 Mitochondrial GTPase [ 98.1 7.3E-06 1.6E-10 66.0 5.9 120 2-124 313-454 (531)
298 PRK07560 elongation factor EF- 98.1 2.4E-05 5.3E-10 67.2 9.5 68 5-76 85-152 (731)
299 TIGR00490 aEF-2 translation el 98.1 5.4E-06 1.2E-10 71.1 5.5 67 6-76 85-151 (720)
300 PRK09602 translation-associate 98.1 3.5E-05 7.6E-10 61.7 9.5 51 63-117 217-268 (396)
301 COG0050 TufB GTPases - transla 98.0 1.2E-05 2.6E-10 61.2 6.0 86 12-104 80-177 (394)
302 COG3276 SelB Selenocysteine-sp 98.0 7.1E-05 1.5E-09 59.7 9.6 108 9-120 52-162 (447)
303 TIGR00750 lao LAO/AO transport 98.0 3E-05 6.4E-10 59.9 7.3 103 7-120 127-238 (300)
304 smart00010 small_GTPase Small 98.0 6.4E-05 1.4E-09 49.6 7.8 79 21-109 37-115 (124)
305 PTZ00416 elongation factor 2; 97.9 2.4E-05 5.3E-10 68.1 6.4 67 6-76 91-157 (836)
306 PLN00116 translation elongatio 97.8 4.1E-05 9E-10 66.8 6.7 67 6-76 97-163 (843)
307 KOG1707 Predicted Ras related/ 97.8 7.3E-05 1.6E-09 61.5 7.5 89 29-120 494-583 (625)
308 cd01852 AIG1 AIG1 (avrRpt2-ind 97.8 0.00047 1E-08 49.8 10.8 114 4-121 48-185 (196)
309 PF01926 MMR_HSR1: 50S ribosom 97.8 0.00019 4.1E-09 47.3 7.5 61 4-72 46-116 (116)
310 COG3596 Predicted GTPase [Gene 97.8 0.00018 3.9E-09 54.4 8.0 115 2-120 84-222 (296)
311 KOG0461 Selenocysteine-specifi 97.7 0.00036 7.8E-09 54.5 9.5 117 3-124 66-193 (522)
312 KOG0099 G protein subunit Galp 97.7 0.00014 3E-09 54.7 7.0 71 4-76 201-282 (379)
313 KOG1490 GTP-binding protein CR 97.7 0.00039 8.5E-09 56.6 9.2 96 31-127 248-348 (620)
314 KOG0458 Elongation factor 1 al 97.7 8.9E-05 1.9E-09 60.9 5.4 103 8-111 256-373 (603)
315 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00036 7.9E-09 40.2 5.9 45 29-74 12-58 (58)
316 smart00053 DYNc Dynamin, GTPas 97.6 0.00028 6E-09 52.8 6.7 68 7-77 125-206 (240)
317 COG0480 FusA Translation elong 97.6 0.00011 2.5E-09 62.5 5.1 66 7-76 76-141 (697)
318 KOG0460 Mitochondrial translat 97.6 0.00053 1.1E-08 53.4 8.2 88 12-102 122-217 (449)
319 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.00089 1.9E-08 49.6 8.8 92 8-107 84-183 (225)
320 COG4108 PrfC Peptide chain rel 97.5 0.00043 9.3E-09 55.5 7.1 84 7-96 81-164 (528)
321 KOG0468 U5 snRNP-specific prot 97.5 0.00018 3.8E-09 60.3 4.9 68 4-75 194-261 (971)
322 PF00350 Dynamin_N: Dynamin fa 97.5 0.00032 7E-09 49.0 5.5 63 6-73 102-168 (168)
323 KOG3905 Dynein light intermedi 97.4 0.0036 7.8E-08 48.7 11.1 58 63-120 222-290 (473)
324 COG5258 GTPBP1 GTPase [General 97.4 0.0023 4.9E-08 50.8 9.6 100 7-112 203-331 (527)
325 TIGR02836 spore_IV_A stage IV 97.4 0.0017 3.7E-08 52.2 8.8 88 25-117 138-234 (492)
326 KOG0705 GTPase-activating prot 97.4 0.00095 2.1E-08 54.9 7.5 104 24-127 89-196 (749)
327 KOG1532 GTPase XAB1, interacts 97.3 0.0011 2.5E-08 50.3 6.9 114 7-123 116-267 (366)
328 KOG3886 GTP-binding protein [S 97.3 0.0011 2.3E-08 49.2 6.5 71 4-77 52-130 (295)
329 cd03110 Fer4_NifH_child This p 97.3 0.0032 7E-08 44.6 8.7 84 6-98 92-175 (179)
330 COG1161 Predicted GTPases [Gen 97.0 0.0018 3.9E-08 50.6 5.9 92 15-113 18-110 (322)
331 PF05783 DLIC: Dynein light in 97.0 0.008 1.7E-07 49.3 9.6 59 63-121 196-265 (472)
332 KOG0466 Translation initiation 97.0 0.001 2.2E-08 51.3 4.0 106 9-120 127-241 (466)
333 KOG0465 Mitochondrial elongati 96.9 0.005 1.1E-07 51.3 7.8 66 7-76 104-169 (721)
334 cd04178 Nucleostemin_like Nucl 96.9 0.0027 5.8E-08 45.1 5.5 44 32-77 1-44 (172)
335 KOG3887 Predicted small GTPase 96.9 0.017 3.7E-07 43.3 9.4 116 5-125 75-207 (347)
336 PRK10463 hydrogenase nickel in 96.8 0.0039 8.4E-08 47.9 5.7 55 64-118 231-287 (290)
337 TIGR00991 3a0901s02IAP34 GTP-b 96.7 0.0097 2.1E-07 46.2 7.7 80 3-84 84-174 (313)
338 KOG1954 Endocytosis/signaling 96.6 0.0015 3.3E-08 51.5 2.6 67 9-78 149-226 (532)
339 COG3640 CooC CO dehydrogenase 96.6 0.038 8.3E-07 41.1 9.7 81 3-96 132-212 (255)
340 COG0378 HypB Ni2+-binding GTPa 96.5 0.0068 1.5E-07 43.8 5.3 53 67-119 146-200 (202)
341 KOG0448 Mitofusin 1 GTPase, in 96.4 0.022 4.8E-07 48.2 8.1 91 7-103 208-309 (749)
342 PF04548 AIG1: AIG1 family; I 96.4 0.02 4.4E-07 41.9 7.2 116 3-122 47-188 (212)
343 PTZ00258 GTP-binding protein; 96.3 0.037 8E-07 44.4 8.8 44 63-106 220-266 (390)
344 KOG1424 Predicted GTP-binding 96.2 0.02 4.2E-07 47.0 6.5 69 27-104 171-244 (562)
345 PF03308 ArgK: ArgK protein; 96.0 0.0051 1.1E-07 46.4 2.6 95 26-129 138-239 (266)
346 PF11111 CENP-M: Centromere pr 95.9 0.15 3.3E-06 36.2 9.4 89 30-119 64-152 (176)
347 KOG2484 GTPase [General functi 95.9 0.02 4.4E-07 45.6 5.3 67 18-93 134-202 (435)
348 cd01853 Toc34_like Toc34-like 95.8 0.054 1.2E-06 40.8 7.3 71 4-77 78-163 (249)
349 KOG0467 Translation elongation 95.6 0.017 3.8E-07 49.4 4.3 60 8-74 73-135 (887)
350 KOG2423 Nucleolar GTPase [Gene 95.4 0.11 2.4E-06 41.7 7.9 86 23-115 203-295 (572)
351 PF14331 ImcF-related_N: ImcF- 95.4 0.046 9.9E-07 41.6 5.7 97 30-126 25-137 (266)
352 cd02038 FleN-like FleN is a me 95.4 0.087 1.9E-06 35.9 6.5 63 7-75 47-109 (139)
353 KOG0085 G protein subunit Galp 95.2 0.024 5.1E-07 42.3 3.4 116 6-123 200-352 (359)
354 COG1703 ArgK Putative periplas 95.2 0.35 7.5E-06 37.5 9.7 94 26-128 160-262 (323)
355 KOG1143 Predicted translation 95.1 0.27 5.9E-06 39.3 9.0 98 7-110 251-378 (591)
356 KOG0469 Elongation factor 2 [T 95.1 0.03 6.5E-07 46.2 3.9 66 5-75 96-162 (842)
357 KOG0459 Polypeptide release fa 94.9 0.027 5.8E-07 45.1 3.1 105 9-113 159-279 (501)
358 PF05049 IIGP: Interferon-indu 94.8 0.29 6.2E-06 39.2 8.8 110 6-122 87-220 (376)
359 PHA02518 ParA-like protein; Pr 94.6 0.38 8.3E-06 34.6 8.4 64 9-75 79-145 (211)
360 TIGR00064 ftsY signal recognit 94.5 0.38 8.3E-06 36.7 8.6 77 30-118 190-266 (272)
361 COG4963 CpaE Flp pilus assembl 94.4 0.44 9.5E-06 37.9 8.8 67 6-77 219-285 (366)
362 KOG0463 GTP-binding protein GP 94.4 0.29 6.2E-06 39.2 7.6 63 9-75 221-285 (641)
363 TIGR03348 VI_IcmF type VI secr 94.4 0.28 6E-06 44.9 8.6 49 29-77 200-257 (1169)
364 KOG4273 Uncharacterized conser 94.3 0.19 4.2E-06 38.0 6.4 93 29-123 77-225 (418)
365 PRK13505 formate--tetrahydrofo 94.2 0.49 1.1E-05 39.6 8.9 71 45-120 357-429 (557)
366 KOG0410 Predicted GTP binding 94.1 0.11 2.4E-06 40.6 4.8 107 4-123 225-344 (410)
367 COG1149 MinD superfamily P-loo 94.0 0.4 8.6E-06 36.6 7.4 64 25-98 180-243 (284)
368 PRK09601 GTP-binding protein Y 93.8 0.85 1.8E-05 36.4 9.4 42 63-104 199-241 (364)
369 cd03111 CpaE_like This protein 93.6 0.42 9E-06 30.9 6.3 58 12-72 48-106 (106)
370 PRK14974 cell division protein 93.3 0.77 1.7E-05 36.2 8.4 102 9-122 225-332 (336)
371 cd02036 MinD Bacterial cell di 93.1 1.5 3.3E-05 30.5 9.0 83 7-98 65-147 (179)
372 KOG0447 Dynamin-like GTP bindi 92.8 2.4 5.2E-05 35.8 10.6 76 18-96 436-512 (980)
373 TIGR00993 3a0901s04IAP86 chlor 92.0 1.1 2.4E-05 38.7 8.1 72 4-77 165-250 (763)
374 PRK10416 signal recognition pa 92.0 1.5 3.4E-05 34.2 8.5 81 30-122 232-312 (318)
375 TIGR03371 cellulose_yhjQ cellu 91.9 1.9 4.1E-05 31.9 8.7 65 6-75 116-180 (246)
376 cd03112 CobW_like The function 91.8 0.46 9.9E-06 33.1 4.9 64 6-75 86-158 (158)
377 KOG0464 Elongation factor G [T 91.7 0.029 6.3E-07 45.2 -1.4 67 4-76 101-167 (753)
378 PF00735 Septin: Septin; Inte 91.2 1.1 2.3E-05 34.5 6.8 67 30-101 113-182 (281)
379 KOG1547 Septin CDC10 and relat 90.4 1.9 4.1E-05 32.6 7.1 108 3-115 100-238 (336)
380 TIGR00959 ffh signal recogniti 90.1 2.5 5.5E-05 34.5 8.3 84 9-102 185-274 (428)
381 cd02117 NifH_like This family 89.9 5.5 0.00012 28.9 9.4 86 8-98 118-206 (212)
382 smart00010 small_GTPase Small 89.9 0.00032 7E-09 46.2 -12.0 41 35-75 36-78 (124)
383 KOG2485 Conserved ATP/GTP bind 89.8 1.5 3.2E-05 34.3 6.4 99 15-120 30-131 (335)
384 PRK00771 signal recognition pa 89.8 2 4.4E-05 35.1 7.6 84 9-102 178-267 (437)
385 COG3523 IcmF Type VI protein s 89.5 3.4 7.4E-05 38.0 9.2 50 28-77 212-270 (1188)
386 cd03115 SRP The signal recogni 89.1 5.1 0.00011 27.9 8.4 59 30-98 112-170 (173)
387 COG5019 CDC3 Septin family pro 88.4 4.5 9.7E-05 32.3 8.2 65 30-99 133-200 (373)
388 PRK10867 signal recognition pa 88.2 5.9 0.00013 32.4 9.2 63 30-102 213-275 (433)
389 PF01656 CbiA: CobQ/CobB/MinD/ 87.4 2 4.3E-05 30.3 5.5 66 8-76 96-161 (195)
390 PF09547 Spore_IV_A: Stage IV 87.1 5 0.00011 32.9 7.9 80 33-117 148-234 (492)
391 TIGR01968 minD_bact septum sit 86.5 6.7 0.00014 29.0 8.2 62 7-75 114-175 (261)
392 COG0523 Putative GTPases (G3E 86.5 3.3 7.1E-05 32.6 6.6 65 30-102 116-184 (323)
393 KOG2486 Predicted GTPase [Gene 86.2 0.28 6.1E-06 37.6 0.5 103 8-115 184-311 (320)
394 cd02037 MRP-like MRP (Multiple 86.1 9.2 0.0002 26.5 8.7 86 7-97 68-161 (169)
395 KOG1486 GTP-binding protein DR 85.6 12 0.00026 28.7 8.8 93 2-96 106-213 (364)
396 KOG0780 Signal recognition par 85.0 3.3 7.2E-05 33.5 5.9 47 3-49 180-232 (483)
397 KOG2655 Septin family protein 84.8 6.8 0.00015 31.3 7.6 70 30-104 129-201 (366)
398 cd03114 ArgK-like The function 84.3 2.9 6.2E-05 28.8 4.9 57 7-74 92-148 (148)
399 PRK13507 formate--tetrahydrofo 84.2 7.3 0.00016 32.9 7.8 69 47-120 388-458 (587)
400 PF10087 DUF2325: Uncharacteri 84.0 6.9 0.00015 24.7 6.2 19 83-101 64-82 (97)
401 cd00477 FTHFS Formyltetrahydro 84.0 7.1 0.00015 32.6 7.6 69 47-120 343-413 (524)
402 PRK13849 putative crown gall t 83.9 8.6 0.00019 28.6 7.6 65 7-74 84-151 (231)
403 CHL00175 minD septum-site dete 83.8 9.9 0.00021 28.8 8.1 62 9-75 129-190 (281)
404 PF09419 PGP_phosphatase: Mito 83.7 13 0.00029 26.3 9.8 85 28-115 36-127 (168)
405 PRK10818 cell division inhibit 83.0 8 0.00017 29.1 7.3 64 9-75 116-185 (270)
406 cd02042 ParA ParA and ParB of 82.9 7.6 0.00016 24.4 6.2 40 12-54 45-84 (104)
407 cd02032 Bchl_like This family 82.5 15 0.00031 27.7 8.5 65 9-75 118-184 (267)
408 TIGR01425 SRP54_euk signal rec 82.2 9.4 0.0002 31.3 7.7 85 7-101 183-273 (429)
409 PRK13185 chlL protochlorophyll 82.1 19 0.00041 27.0 9.2 80 9-97 120-201 (270)
410 PF07015 VirC1: VirC1 protein; 81.7 7.4 0.00016 29.1 6.4 102 7-113 84-187 (231)
411 TIGR01281 DPOR_bchL light-inde 80.2 21 0.00045 26.8 8.7 67 7-75 116-184 (268)
412 cd01900 YchF YchF subfamily. 79.5 6 0.00013 30.3 5.5 40 64-104 196-237 (274)
413 PF00448 SRP54: SRP54-type pro 79.2 21 0.00046 25.8 9.0 63 30-102 113-175 (196)
414 PRK13506 formate--tetrahydrofo 79.1 15 0.00032 31.2 7.8 68 48-120 381-451 (578)
415 COG2759 MIS1 Formyltetrahydrof 78.0 13 0.00029 30.7 7.1 101 16-121 304-427 (554)
416 TIGR00640 acid_CoA_mut_C methy 77.4 19 0.00042 24.3 9.5 78 30-122 53-130 (132)
417 PRK12727 flagellar biosynthesi 77.1 27 0.00058 29.7 8.9 84 7-102 429-519 (559)
418 PLN02759 Formate--tetrahydrofo 76.9 15 0.00032 31.5 7.3 67 49-120 439-508 (637)
419 PF03193 DUF258: Protein of un 75.8 8.1 0.00018 27.2 4.9 28 88-115 6-33 (161)
420 PRK13695 putative NTPase; Prov 75.7 24 0.00053 24.5 9.2 89 15-119 80-172 (174)
421 PF01268 FTHFS: Formate--tetra 75.4 2 4.4E-05 36.0 2.0 100 16-120 306-428 (557)
422 KOG4350 Uncharacterized conser 75.2 6.5 0.00014 32.0 4.6 38 2-43 488-525 (620)
423 KOG3929 Uncharacterized conser 75.2 1.1 2.4E-05 34.2 0.4 41 63-103 190-235 (363)
424 TIGR01007 eps_fam capsular exo 73.9 15 0.00032 26.3 6.1 48 26-76 146-193 (204)
425 PF14606 Lipase_GDSL_3: GDSL-l 73.6 7.3 0.00016 27.9 4.2 64 6-70 33-100 (178)
426 COG0012 Predicted GTPase, prob 72.9 14 0.00031 29.6 6.0 40 63-103 206-247 (372)
427 PTZ00386 formyl tetrahydrofola 72.8 28 0.0006 29.8 7.9 67 48-119 425-495 (625)
428 cd02011 TPP_PK Thiamine pyroph 72.5 38 0.00082 25.3 9.2 105 28-132 76-186 (227)
429 PF03709 OKR_DC_1_N: Orn/Lys/A 71.4 25 0.00054 23.0 6.2 47 25-73 31-77 (115)
430 CHL00072 chlL photochlorophyll 70.8 46 0.00099 25.6 10.1 111 9-122 118-246 (290)
431 COG1010 CobJ Precorrin-3B meth 70.7 13 0.00028 27.9 5.1 47 27-73 151-197 (249)
432 KOG0781 Signal recognition par 69.0 45 0.00098 28.0 8.2 92 5-101 467-565 (587)
433 PRK06731 flhF flagellar biosyn 68.9 50 0.0011 25.3 8.2 85 8-102 156-246 (270)
434 PRK14722 flhF flagellar biosyn 66.6 63 0.0014 26.1 8.5 89 6-102 217-316 (374)
435 COG0552 FtsY Signal recognitio 63.9 64 0.0014 25.6 7.9 93 4-111 221-326 (340)
436 TIGR01969 minD_arch cell divis 63.7 35 0.00076 25.0 6.4 62 6-75 110-172 (251)
437 PRK11889 flhF flagellar biosyn 63.6 71 0.0015 26.3 8.3 84 9-102 323-412 (436)
438 PRK02261 methylaspartate mutas 63.5 44 0.00095 22.7 8.1 82 30-120 54-135 (137)
439 PF02492 cobW: CobW/HypB/UreG, 63.5 6.7 0.00014 27.7 2.4 57 30-93 113-170 (178)
440 TIGR02016 BchX chlorophyllide 63.3 65 0.0014 24.9 7.9 88 29-124 146-253 (296)
441 TIGR03815 CpaE_hom_Actino heli 62.4 63 0.0014 25.0 7.8 78 7-98 207-284 (322)
442 PLN03194 putative disease resi 62.3 57 0.0012 23.6 8.8 108 18-130 68-184 (187)
443 PRK05703 flhF flagellar biosyn 62.3 66 0.0014 26.3 8.1 93 9-113 302-402 (424)
444 PRK11537 putative GTP-binding 61.7 58 0.0013 25.5 7.5 90 12-112 96-196 (318)
445 cd04170 EF-G_bact Elongation f 60.8 19 0.00041 27.1 4.6 25 95-119 241-265 (268)
446 KOG1486 GTP-binding protein DR 60.3 45 0.00098 25.7 6.2 51 63-120 238-288 (364)
447 PF08438 MMR_HSR1_C: GTPase of 60.1 10 0.00022 24.9 2.5 31 69-103 1-32 (109)
448 cd02071 MM_CoA_mut_B12_BD meth 58.0 22 0.00048 23.4 4.0 41 30-72 50-90 (122)
449 PRK12726 flagellar biosynthesi 57.9 82 0.0018 25.7 7.7 85 8-102 287-377 (407)
450 cd02067 B12-binding B12 bindin 57.0 29 0.00063 22.5 4.5 41 30-72 50-90 (119)
451 COG1908 FrhD Coenzyme F420-red 56.1 28 0.0006 23.4 4.0 89 26-122 25-124 (132)
452 cd02033 BchX Chlorophyllide re 55.9 1E+02 0.0022 24.4 8.4 86 31-124 173-277 (329)
453 TIGR03436 acidobact_VWFA VWFA- 54.7 94 0.002 23.7 10.0 89 31-125 165-260 (296)
454 KOG1201 Hydroxysteroid 17-beta 54.3 76 0.0017 24.8 6.8 59 5-72 63-121 (300)
455 TIGR02475 CobW cobalamin biosy 53.3 85 0.0018 24.8 7.2 45 67-114 177-224 (341)
456 TIGR03566 FMN_reduc_MsuE FMN r 53.2 20 0.00043 25.2 3.3 49 24-72 62-110 (174)
457 cd02040 NifH NifH gene encodes 53.1 92 0.002 23.1 9.5 65 8-73 118-185 (270)
458 PF14784 ECIST_Cterm: C-termin 52.9 32 0.0007 23.2 4.1 40 29-68 82-123 (126)
459 PRK14721 flhF flagellar biosyn 51.8 1.3E+02 0.0029 24.6 8.9 106 6-125 271-383 (420)
460 cd02035 ArsA ArsA ATPase funct 51.1 90 0.0019 22.7 6.6 67 7-76 114-183 (217)
461 PF10036 RLL: Putative carniti 51.0 46 0.001 25.1 5.1 77 38-128 17-96 (249)
462 PRK11670 antiporter inner memb 50.7 1.3E+02 0.0028 24.1 9.2 42 30-75 239-281 (369)
463 PRK13660 hypothetical protein; 50.7 92 0.002 22.4 6.5 15 28-42 127-141 (182)
464 PF02662 FlpD: Methyl-viologen 50.6 73 0.0016 21.2 7.4 35 87-121 83-122 (124)
465 PF12327 FtsZ_C: FtsZ family, 50.4 63 0.0014 20.4 5.7 51 23-74 28-78 (95)
466 TIGR01287 nifH nitrogenase iro 49.6 1.1E+02 0.0024 23.0 9.0 64 8-72 117-183 (275)
467 PF00205 TPP_enzyme_M: Thiamin 48.1 36 0.00078 22.6 3.9 43 52-101 4-46 (137)
468 PRK06995 flhF flagellar biosyn 46.8 1.7E+02 0.0038 24.5 9.7 77 34-122 368-445 (484)
469 PF13676 TIR_2: TIR domain; PD 46.1 57 0.0012 20.2 4.4 52 15-70 34-85 (102)
470 COG3260 Ni,Fe-hydrogenase III 46.1 96 0.0021 21.3 5.7 37 6-42 8-61 (148)
471 PF08468 MTS_N: Methyltransfer 45.8 55 0.0012 22.8 4.5 44 28-75 67-110 (155)
472 PF03358 FMN_red: NADPH-depend 45.2 39 0.00085 22.7 3.8 73 24-97 64-139 (152)
473 PRK12724 flagellar biosynthesi 45.0 1.8E+02 0.0039 24.1 8.9 62 31-102 333-394 (432)
474 PRK14725 pyruvate kinase; Prov 44.8 2.1E+02 0.0045 24.8 9.0 94 31-126 501-597 (608)
475 cd01886 EF-G Elongation factor 44.5 46 0.001 25.3 4.4 25 95-119 243-267 (270)
476 PRK14723 flhF flagellar biosyn 44.5 2.2E+02 0.0047 25.5 8.7 86 30-124 293-379 (767)
477 TIGR01005 eps_transp_fam exopo 44.3 71 0.0015 28.1 6.0 63 9-75 658-720 (754)
478 COG3845 ABC-type uncharacteriz 44.2 52 0.0011 27.5 4.7 67 6-74 135-201 (501)
479 TIGR03567 FMN_reduc_SsuE FMN r 43.9 26 0.00056 24.5 2.7 70 24-95 59-129 (171)
480 smart00255 TIR Toll - interleu 43.5 92 0.002 20.4 5.6 31 15-46 40-70 (140)
481 TIGR01753 flav_short flavodoxi 43.3 80 0.0017 20.7 5.0 70 27-97 42-113 (140)
482 KOG1487 GTP-binding protein DR 42.6 30 0.00064 26.8 2.9 49 63-119 231-280 (358)
483 TIGR03029 EpsG chain length de 42.0 99 0.0021 23.2 5.8 33 25-58 230-262 (274)
484 COG2813 RsmC 16S RNA G1207 met 41.6 80 0.0017 24.7 5.2 46 26-75 33-78 (300)
485 PRK10569 NAD(P)H-dependent FMN 41.6 33 0.00071 24.7 3.0 46 24-72 60-108 (191)
486 COG1419 FlhF Flagellar GTP-bin 40.8 2E+02 0.0044 23.5 10.5 84 6-101 283-372 (407)
487 PTZ00222 60S ribosomal protein 40.7 80 0.0017 24.1 4.9 96 29-142 147-242 (263)
488 PF15416 DUF4623: Domain of un 40.6 48 0.001 26.5 3.8 31 28-58 356-386 (442)
489 PRK13232 nifH nitrogenase redu 40.5 1.6E+02 0.0034 22.1 8.9 45 29-74 140-185 (273)
490 COG2179 Predicted hydrolase of 40.0 1E+02 0.0022 22.0 5.0 44 43-98 45-88 (175)
491 PRK13705 plasmid-partitioning 39.9 1.9E+02 0.0042 23.3 7.4 64 9-75 237-306 (388)
492 COG0541 Ffh Signal recognition 38.4 1.1E+02 0.0023 25.4 5.6 37 6-44 184-226 (451)
493 PRK06242 flavodoxin; Provision 37.8 1.2E+02 0.0027 20.2 6.2 67 27-98 40-106 (150)
494 PF05014 Nuc_deoxyrib_tr: Nucl 37.7 1.1E+02 0.0024 19.6 5.1 45 26-75 57-101 (113)
495 PRK10037 cell division protein 37.6 1.5E+02 0.0033 21.9 6.2 33 7-41 118-150 (250)
496 COG0420 SbcD DNA repair exonuc 37.5 71 0.0015 25.5 4.6 49 29-77 39-89 (390)
497 cd01983 Fer4_NifH The Fer4_Nif 37.1 90 0.0019 18.4 5.9 59 12-71 39-99 (99)
498 PRK12723 flagellar biosynthesi 35.6 2.4E+02 0.0052 22.9 8.2 104 7-122 255-366 (388)
499 cd02072 Glm_B12_BD B12 binding 35.4 62 0.0013 21.8 3.4 76 30-115 50-126 (128)
500 PF11760 CbiG_N: Cobalamin syn 35.2 1.1E+02 0.0024 19.0 4.5 43 21-69 2-44 (84)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=194.08 Aligned_cols=135 Identities=41% Similarity=0.708 Sum_probs=122.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+.+|||| |||||||+++...||++|||+|||||+++.+||+.+..|+.++.++...++|.+|||||+|+.+.+.++.+
T Consensus 58 iKlQIWD--TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~ 135 (205)
T KOG0084|consen 58 IKLQIWD--TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTE 135 (205)
T ss_pred EEEEeee--ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHH
Confidence 3677777 99999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceecc
Q 031249 85 EGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGY 141 (163)
Q Consensus 85 ~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
+++.++.+++++ ++|+||+++.||++.|..|...+.++...+.........+.+++.
T Consensus 136 ~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~ 193 (205)
T KOG0084|consen 136 EAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKG 193 (205)
T ss_pred HHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence 999999999999 999999999999999999999999988877766554444444443
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-33 Score=194.04 Aligned_cols=147 Identities=38% Similarity=0.691 Sum_probs=125.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+.+.||| |||+|+|.++.++||++|+++|+|||+++.+||..+..|++++.+..++++-+.|+|||.|+.+.+++..+
T Consensus 54 ikfeIWD--TAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ 131 (200)
T KOG0092|consen 54 IKFEIWD--TAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFE 131 (200)
T ss_pred EEEEEEE--cCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHH
Confidence 4566777 99999999999999999999999999999999999999999999988888888999999999998999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccCC
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 163 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (163)
++..+++..++.|+|+||+++.||+++|..|.+.+.....+......+.+.+.-+.... .+...++||+
T Consensus 132 ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~----------~~~~~~~~C~ 200 (200)
T KOG0092|consen 132 EAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQ----------EPARPSGCCA 200 (200)
T ss_pred HHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccCC----------CCcCcCCcCC
Confidence 99999999999999999999999999999999999887776654222222222222111 5667788885
No 3
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-31 Score=189.70 Aligned_cols=157 Identities=46% Similarity=0.786 Sum_probs=134.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+..|||| |||||||+++...||++|.|+++|||++...+|+.+..|+.+++.+.+++++++|||||+||...+.++.+
T Consensus 63 vkaqIWD--TAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te 140 (222)
T KOG0087|consen 63 VKAQIWD--TAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTE 140 (222)
T ss_pred EEEeeec--ccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchh
Confidence 3567787 99999999999999999999999999999999999999999999999899999999999999988999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCc---eeccCCCCCCCCCCCCCCcCCCcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGI---KVGYGRGQGPSGARDGTVSQRGGC 161 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 161 (163)
++..+++..++.++++||.++.||+..|..++..|+....++........... ..++..+..+.+...-++.++++|
T Consensus 141 ~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~c 220 (222)
T KOG0087|consen 141 DGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGC 220 (222)
T ss_pred hhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCC
Confidence 99999999999999999999999999999999999999888876666553222 223333333334444467778888
Q ss_pred CC
Q 031249 162 CS 163 (163)
Q Consensus 162 ~~ 163 (163)
|+
T Consensus 221 c~ 222 (222)
T KOG0087|consen 221 CS 222 (222)
T ss_pred CC
Confidence 86
No 4
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.9e-31 Score=186.13 Aligned_cols=134 Identities=69% Similarity=1.106 Sum_probs=125.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+++|||| |+|+|.|+++++.||++|-|+|+|||++..+||..+..|+..++++..++..++|+|||+|+...++|..+
T Consensus 55 IKlqiwD--taGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~E 132 (216)
T KOG0098|consen 55 IKLQIWD--TAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKE 132 (216)
T ss_pred EEEEEEe--cCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHH
Confidence 4566777 99999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCC-ceec
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSG-IKVG 140 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 140 (163)
+++.|++++|+.++++||+++.+|++.|..+...+.+..+.+.....+..++ ++++
T Consensus 133 EGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~~~~~~~k~k~k~~ 189 (216)
T KOG0098|consen 133 EGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVFDDINESKGKIKIG 189 (216)
T ss_pred HHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhcccccccccccceeec
Confidence 9999999999999999999999999999999999999999999888888777 4444
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=185.92 Aligned_cols=120 Identities=48% Similarity=0.873 Sum_probs=113.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+.+|+|| |+|||+|..+.+.|++.|+++++|||++++.||+.+..|++.+.++...++|++|||||+|+...++|+.+
T Consensus 61 i~lQiWD--taGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e 138 (207)
T KOG0078|consen 61 IKLQIWD--TAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKE 138 (207)
T ss_pred EEEEEEE--cccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHH
Confidence 4677777 99999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
.++++|.++|+.|+|+||++|.||++.|..|.+.+..+....
T Consensus 139 ~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 139 RGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999865554
No 6
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=7.5e-29 Score=169.84 Aligned_cols=155 Identities=39% Similarity=0.662 Sum_probs=134.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CC-CeEEEEeeCCCCCCCCcc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PN-MSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~-~p~ilv~nK~D~~~~~~v 81 (163)
.+.+|||| |||||+|+++.+.||+++-|+++|||+++.+||+.+..|+++...+.. |. +.+.|||+|.|+...++|
T Consensus 57 riklqlwd--tagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV 134 (213)
T KOG0091|consen 57 RIKLQLWD--TAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV 134 (213)
T ss_pred EEEEEEee--ccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence 35778888 999999999999999999999999999999999999999999877665 44 445788999999999999
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCcc
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC 161 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (163)
+.++++.++...|+.|+|+||+++.||++.|..|.+.+...+.+++...+-.-.+.+......-. .+..-..+++.|
T Consensus 135 t~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~---~s~~~~~P~k~c 211 (213)
T KOG0091|consen 135 TAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIP---RSPSRKQPSKPC 211 (213)
T ss_pred cHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCC---CcccccCCCCCC
Confidence 99999999999999999999999999999999999999999999988888888888875554433 223334566778
Q ss_pred CC
Q 031249 162 CS 163 (163)
Q Consensus 162 ~~ 163 (163)
||
T Consensus 212 ~C 213 (213)
T KOG0091|consen 212 QC 213 (213)
T ss_pred CC
Confidence 76
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-29 Score=177.27 Aligned_cols=124 Identities=42% Similarity=0.637 Sum_probs=112.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+.+|||| |||||||+.+++.|++++.++|+|||+++..||+....|++.++..+.. ++-++|||||.||.+.+++..
T Consensus 71 vrLQlWD--TAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~ 148 (221)
T KOG0094|consen 71 VRLQLWD--TAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI 148 (221)
T ss_pred EEEEEEe--cccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH
Confidence 5678888 9999999999999999999999999999999999999999999998876 488899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~ 130 (163)
+++...+++++..|+++||+.|.||..+|..+...+.........++
T Consensus 149 eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~ 195 (221)
T KOG0094|consen 149 EEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEVLEILSK 195 (221)
T ss_pred HHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccccccccc
Confidence 99999999999999999999999999999998777776655333333
No 8
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.8e-29 Score=170.58 Aligned_cols=122 Identities=35% Similarity=0.697 Sum_probs=113.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.||| |+|||+|..+-+.||++++++++|||++|.+||+.+..|..+++......+-+++||||+|+.+++.++.++
T Consensus 63 ~L~IWD--TAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qe 140 (218)
T KOG0088|consen 63 DLHIWD--TAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQE 140 (218)
T ss_pred eeeeee--ccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHH
Confidence 456666 999999999999999999999999999999999999999999999887778999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
+..+++.-|..|+++||+.+.||.++|+.|....++.....+..
T Consensus 141 Ae~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~ 184 (218)
T KOG0088|consen 141 AEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRT 184 (218)
T ss_pred HHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999988877655543
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=165.73 Aligned_cols=131 Identities=37% Similarity=0.588 Sum_probs=116.8
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+|..+.|.+|||||+|+|+.+...|++..+++++|||+++.+||.....|+++++... +.+|-+|||||.|+++.+.+.
T Consensus 53 ~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~ 131 (198)
T KOG0079|consen 53 NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVD 131 (198)
T ss_pred CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeee
Confidence 4555555555599999999999999999999999999999999999999999999887 579999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH-hhcccccccCC
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI-QEGALDAVNDQ 134 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~-~~~~~~~~~~~ 134 (163)
.++++.|+...++.+||+||+.+.|++.+|.-|.+++++.. .++....++..
T Consensus 132 t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~~r~~~ 184 (198)
T KOG0079|consen 132 TEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQQRADA 184 (198)
T ss_pred hHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHHHhhcc
Confidence 99999999999999999999999999999999999998887 44444444443
No 10
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=174.16 Aligned_cols=155 Identities=79% Similarity=1.211 Sum_probs=142.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |+|+++|..++..+++++|++++|||+++..+|..+..|+..+........|+++++||.|+.+.+.+..++
T Consensus 56 ~l~l~D--t~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 133 (210)
T PLN03108 56 KLQIWD--TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (210)
T ss_pred EEEEEe--CCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHH
Confidence 455666 999999999999999999999999999999999999999998877665679999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccC
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 162 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (163)
+..+++.++++++++||+++.||+++|.++++.+.+...+......++..+...+.+.-+..++.+++++++-.|||
T Consensus 134 ~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 134 GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 99999999999999999999999999999999999988888888888889999999988889999999999999999
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-28 Score=165.12 Aligned_cols=121 Identities=39% Similarity=0.724 Sum_probs=114.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.+.+|+|| |+|+|+|+.+...|+++|+++|++||+++.+||..++.|.-.+..+...+.|+|||+||+|+.+++.++.
T Consensus 69 RiklQiwD--TagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~ 146 (193)
T KOG0093|consen 69 RIKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISH 146 (193)
T ss_pred EEEEEEEe--cccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeH
Confidence 35788888 9999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
+.+..++.+.|+.|||.||+.+.||+++|+.++..|-+.+.+.
T Consensus 147 e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 147 ERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999988776654
No 12
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.9e-28 Score=163.62 Aligned_cols=155 Identities=51% Similarity=0.773 Sum_probs=137.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+.+|||| |+|||+|++..+.||++|-++++|||+++.++|+++-.|+..++....+.+-++|+|||.|+.++++++..
T Consensus 58 vKLQIWD--TAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtfl 135 (214)
T KOG0086|consen 58 VKLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFL 135 (214)
T ss_pred EEEEEee--cccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHH
Confidence 4667777 99999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCC--CCCCCCCCCCCcCCCcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRG--QGPSGARDGTVSQRGGC 161 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 161 (163)
++..++.+..+.+.++|+.+|+||++.|-...+.|+.+.+..+..++...++++-|-.+= +.++++.-.-..+..+|
T Consensus 136 EAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C 214 (214)
T KOG0086|consen 136 EASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC 214 (214)
T ss_pred HHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998775542 34444433444444444
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=166.22 Aligned_cols=120 Identities=43% Similarity=0.671 Sum_probs=108.1
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
.|..+.+-.|||||||+|+.+.+.||++|.|+|+|||++..++|..+..|++++.-+.. +++-.++|+||+|...++.+
T Consensus 56 dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V 135 (209)
T KOG0080|consen 56 DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVV 135 (209)
T ss_pred cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccc
Confidence 34444444444999999999999999999999999999999999999999999977764 67788999999998778999
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+.+++..+++.+++.|+|+||++.++|...|++|+..|++-
T Consensus 136 ~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 136 DREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred cHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998864
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=1e-26 Score=169.27 Aligned_cols=120 Identities=43% Similarity=0.738 Sum_probs=107.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..+|..|++++|++|+|||+++++||+.+..|+..+.+....+.|++|||||+|+.+.+++..+
T Consensus 49 v~l~iwD--taGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~ 126 (202)
T cd04120 49 IRLQIWD--TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ 126 (202)
T ss_pred EEEEEEe--CCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 4556777 99999999999999999999999999999999999999999988776567999999999999877889989
Q ss_pred HHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 85 EGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 85 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
++..+++.. ++.++++||++|.||+++|+++++.+.......
T Consensus 127 ~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~~ 169 (202)
T cd04120 127 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLD 169 (202)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCccc
Confidence 999999875 788999999999999999999999887654443
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=7.5e-27 Score=168.47 Aligned_cols=117 Identities=38% Similarity=0.684 Sum_probs=106.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..+++++|++|||||++++.||+.+..|+.++.+.. ++.|++|||||.|+.+.+.++.+
T Consensus 55 ~~l~iwD--t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~ 131 (189)
T cd04121 55 VKLQLWD--TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATE 131 (189)
T ss_pred EEEEEEe--CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHH
Confidence 3556676 99999999999999999999999999999999999999999997765 57999999999999877788999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
++..+++..+++++++||+++.||+++|+++++.+..+..
T Consensus 132 ~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 132 QAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998875444
No 16
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=1.8e-26 Score=169.73 Aligned_cols=155 Identities=44% Similarity=0.751 Sum_probs=122.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.+....+.|+++|+||+|+.+.+.+..+
T Consensus 61 ~~l~l~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~ 138 (216)
T PLN03110 61 VKAQIWD--TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEE 138 (216)
T ss_pred EEEEEEE--CCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHH
Confidence 3677777 99999999999999999999999999999999999999999998876667999999999999777778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccCC
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 163 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (163)
++..++..++++++++||+++.|++++|++++..+.+..............+ .+.+..+.........+.+.+|||+
T Consensus 139 ~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (216)
T PLN03110 139 DGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAAN--SGLPGQGTTINVADTSGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccccccccCccc--ccCcCcCCcccccCccCCCCCCCcC
Confidence 9999999899999999999999999999999999988765444333221111 1111111111112234678889995
No 17
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=7.9e-27 Score=171.82 Aligned_cols=144 Identities=28% Similarity=0.439 Sum_probs=118.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH------- 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~------- 77 (163)
..+.||| |+|+++|..++..+++++|++|+|||++++++|..+..|+..+.+...++.|++||+||+|+.+
T Consensus 44 ~~l~iwD--t~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 44 YNISIWD--TAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred EEEEEEe--CCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence 3567777 9999999999999999999999999999999999999988888766556789999999999865
Q ss_pred ------------CCccCHHHHHHHHHHcC--------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccc
Q 031249 78 ------------RRAVSKEEGEQFAKENG--------------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAV 131 (163)
Q Consensus 78 ------------~~~v~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~ 131 (163)
.+.+..+++..+++..+ ++|+|+||++|.||+++|..+++.+.....++..+..
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~ 201 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN 201 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57788999999998876 6799999999999999999999999877666654221
Q ss_pred cCCCCceeccCCCCCCCCCCCCCCcCCCccC
Q 031249 132 NDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 162 (163)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (163)
. . +..=...+.+.++++||
T Consensus 202 ~--~----------~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 202 R--T----------QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred h--h----------hccccCCCcccCCCCCC
Confidence 1 1 11112344678888998
No 18
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6e-27 Score=159.94 Aligned_cols=122 Identities=36% Similarity=0.629 Sum_probs=111.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
-+|||| |||||+|+++...++++|.+|+++||+++++||-.+..|+.+++.+.- .+..+|+.|||.|+.+.+++...
T Consensus 68 hLQlWD--TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~ 145 (219)
T KOG0081|consen 68 HLQLWD--TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSED 145 (219)
T ss_pred EEeeec--cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHH
Confidence 466777 999999999999999999999999999999999999999999976553 45678999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
++..++..+++||||+||-++.||++..+.|+..+.++++.--..
T Consensus 146 qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~~ 190 (219)
T KOG0081|consen 146 QAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVEK 190 (219)
T ss_pred HHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988765543
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=3.3e-26 Score=166.42 Aligned_cols=146 Identities=36% Similarity=0.597 Sum_probs=117.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEeeCCCCCCCCcc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ilv~nK~D~~~~~~v 81 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... ...+|++||+||.|+...+.+
T Consensus 51 ~l~l~D--t~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 128 (201)
T cd04107 51 RLQLWD--IAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK 128 (201)
T ss_pred EEEEEE--CCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc
Confidence 345565 99999999999999999999999999999999999999999886532 246899999999999765678
Q ss_pred CHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCc
Q 031249 82 SKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGG 160 (163)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (163)
..+++..+++..+ ..++++||+++.||+++|++|++.+.+.......+.+..+.....- + ......+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~ 199 (201)
T cd04107 129 DGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVIDL-----K----QTTTKKKSKG 199 (201)
T ss_pred CHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCccccccc-----c----cceeccccCC
Confidence 8899999999998 6799999999999999999999999877655554444333222111 1 2344556669
Q ss_pred cC
Q 031249 161 CC 162 (163)
Q Consensus 161 ~~ 162 (163)
||
T Consensus 200 ~~ 201 (201)
T cd04107 200 CC 201 (201)
T ss_pred CC
Confidence 99
No 20
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=4.9e-26 Score=164.20 Aligned_cols=138 Identities=36% Similarity=0.565 Sum_probs=116.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.++||| |+|+++|..++..+++++|++|||||+++..+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus 48 ~l~i~D--t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~ 125 (190)
T cd04144 48 MLEVLD--TAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS 125 (190)
T ss_pred EEEEEE--CCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC
Confidence 366677 999999999999999999999999999999999999999998876542 468999999999997777788
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCccC
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 162 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (163)
..++..++..++++++++||+++.|++++|+++++.+.+...... .+.....-...|+++||
T Consensus 126 ~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 187 (190)
T cd04144 126 TEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ------------------GPKGGPTKKKEKKKRKC 187 (190)
T ss_pred HHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC------------------CCcCCCCCcccccccCc
Confidence 888888998889999999999999999999999988775555431 23444555667777887
Q ss_pred C
Q 031249 163 S 163 (163)
Q Consensus 163 ~ 163 (163)
|
T Consensus 188 ~ 188 (190)
T cd04144 188 V 188 (190)
T ss_pred e
Confidence 5
No 21
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=6.2e-26 Score=162.00 Aligned_cols=115 Identities=42% Similarity=0.654 Sum_probs=103.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..|+++||++|+|||++++.+|+.+..|+..+.....++.|++||+||+|+.+.+.+..++
T Consensus 30 ~l~iwD--t~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e 107 (176)
T PTZ00099 30 RLQLWD--TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEE 107 (176)
T ss_pred EEEEEE--CCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHH
Confidence 445555 999999999999999999999999999999999999999999977655678999999999997666788889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+..++..++..++++||+++.||+++|.+|++.+.+.
T Consensus 108 ~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 108 GMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999998999999999999999999999999887653
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=9.5e-26 Score=167.14 Aligned_cols=118 Identities=27% Similarity=0.500 Sum_probs=103.4
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC------
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------ 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~------ 77 (163)
..++||| |+|+++|..+++.|++++|++|+|||+++..||+.+ ..|+..+.+.. +..|++|||||.|+.+
T Consensus 61 v~l~iwD--TaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~ 137 (232)
T cd04174 61 VELSLWD--TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLM 137 (232)
T ss_pred EEEEEEe--CCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhh
Confidence 3456666 999999999999999999999999999999999984 78999998765 5689999999999864
Q ss_pred ------CCccCHHHHHHHHHHcCC-eEEEEcCCCCC-CHHHHHHHHHHHHHHHHhh
Q 031249 78 ------RRAVSKEEGEQFAKENGL-LFLEASARTAQ-NVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 78 ------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~lf~~l~~~~~~~~~~ 125 (163)
.+.+..+++..+++..++ .|+|+||+++. ||+++|..++..+.+...+
T Consensus 138 ~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 138 ELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred hhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 256889999999999998 59999999998 8999999999988775333
No 23
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.8e-26 Score=152.64 Aligned_cols=154 Identities=55% Similarity=0.872 Sum_probs=129.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+|||| |+|+|+|+...+.|++++-+.+.|||++...+++.+..|+...+...+++..+++++||.|+...+.++.+
T Consensus 60 iklqiwd--tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye 137 (215)
T KOG0097|consen 60 IKLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE 137 (215)
T ss_pred EEEEEee--cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH
Confidence 3566676 99999999999999999999999999999999999999999999888899999999999999989999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCCCCCCCCCCCCCcCCCcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC 161 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (163)
++..++++.|+-|+++||++|.+|++.|-+..+++.++.........+-..+.+-.+ +.++..+-++-...++-+|
T Consensus 138 eak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldlnaaesgvq~k~-~~p~~~~l~se~~~~kd~c 213 (215)
T KOG0097|consen 138 EAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLNAAESGVQHKP-SQPSRTSLSSEATGAKDQC 213 (215)
T ss_pred HHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccccchhccCcCCC-CCCCccccccCCCCccccC
Confidence 999999999999999999999999999999999999999888877665554443222 1112222233334456667
No 24
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=5.1e-27 Score=156.14 Aligned_cols=120 Identities=41% Similarity=0.757 Sum_probs=110.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+.+|+|| |+|||+|++....|+++||+++++||+.+..||+..+.|+.++.++....+.+.+++||+|+..++.+..+
T Consensus 47 vklqiwd--tagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~d 124 (192)
T KOG0083|consen 47 VKLQIWD--TAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRD 124 (192)
T ss_pred EEEEEee--ccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccc
Confidence 3566666 99999999999999999999999999999999999999999999988778899999999999777899999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
+++.+++.+++||+++||++|.||+-.|-.|.+.+.++...-
T Consensus 125 dg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~~ 166 (192)
T KOG0083|consen 125 DGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMGA 166 (192)
T ss_pred hHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999888765443
No 25
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=2.8e-25 Score=162.84 Aligned_cols=156 Identities=46% Similarity=0.789 Sum_probs=127.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+... ...|++||+||.|+.+.+.+..+
T Consensus 53 ~l~i~D--t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~ 130 (211)
T cd04111 53 KLQLWD--TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTRE 130 (211)
T ss_pred EEEEEe--CCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHH
Confidence 455666 999999999999999999999999999999999999999999977654 35788999999999877778889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCCC-CCCCCCCC-CCCcCCCccC
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRG-QGPSGARD-GTVSQRGGCC 162 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 162 (163)
++..+++.++++++++||+++.||+++|++|.+.+.+++..........-.+.+-+.... ..+.--++ ...++.+.||
T Consensus 131 ~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
T cd04111 131 EAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCC 210 (211)
T ss_pred HHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCC
Confidence 999999999999999999999999999999999998887666545555544444443332 33333333 4567888999
Q ss_pred C
Q 031249 163 S 163 (163)
Q Consensus 163 ~ 163 (163)
|
T Consensus 211 ~ 211 (211)
T cd04111 211 C 211 (211)
T ss_pred C
Confidence 7
No 26
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-26 Score=156.16 Aligned_cols=120 Identities=43% Similarity=0.754 Sum_probs=109.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+|||| |+|+|+|+++...|++.||++|+|||++-..+|..+.+|+.++.++.+.++-.|+||||+|+.++++++...
T Consensus 57 klqiwd--tagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qi 134 (213)
T KOG0095|consen 57 KLQIWD--TAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQI 134 (213)
T ss_pred EEEEee--ccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHH
Confidence 455555 999999999999999999999999999999999999999999999998888889999999998888999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
++++.+....-|+++||+..+||+.+|..+...++.......
T Consensus 135 geefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~d 176 (213)
T KOG0095|consen 135 GEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQND 176 (213)
T ss_pred HHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 999999888889999999999999999999988876655443
No 27
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=156.70 Aligned_cols=118 Identities=34% Similarity=0.642 Sum_probs=107.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCC--CC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH--RR 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~--~~ 79 (163)
-+|||| |||||||.++.-.+|++||++++|||+++++||+.+..|.+++..... ...|+||+|||+|+.. .+
T Consensus 59 tlQiWD--TAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r 136 (210)
T KOG0394|consen 59 TLQIWD--TAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR 136 (210)
T ss_pred EEEEEe--cccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc
Confidence 467788 999999999999999999999999999999999999999999977665 2489999999999865 27
Q ss_pred ccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 80 AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
.++...+..||...| ++|||+|||...||++.|..+.+.++.....
T Consensus 137 ~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 137 QVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred eeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 899999999998765 8999999999999999999999999988765
No 28
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=8.3e-25 Score=157.38 Aligned_cols=120 Identities=38% Similarity=0.674 Sum_probs=108.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |+|+++|..++..+++++|++|||||++++.+|..+..|+..+........|+++++||.|+.+.+.+..++
T Consensus 50 ~~~i~D--t~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~ 127 (188)
T cd04125 50 KLQIWD--TNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNI 127 (188)
T ss_pred EEEEEE--CCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHH
Confidence 456666 999999999999999999999999999999999999999999988765668999999999998777788888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+..++...+++++++||+++.|++++|.+|++.+..+.....
T Consensus 128 ~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~ 169 (188)
T cd04125 128 AKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE 169 (188)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 888998889999999999999999999999999987665554
No 29
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=6.8e-25 Score=161.19 Aligned_cols=116 Identities=32% Similarity=0.502 Sum_probs=104.6
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCcc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v 81 (163)
..++||| |+|++.|..++..+++++|++|||||++++.+|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+
T Consensus 50 ~~~~i~D--t~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 50 VTLQVWD--IGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred EEEEEEE--CCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 4566777 999999999999999999999999999999999999999999987643 34689999999999877778
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
..+++..+++.++++++++||++|.||+++|+++++.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 128 KDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999998865
No 30
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.93 E-value=2.6e-25 Score=158.74 Aligned_cols=112 Identities=30% Similarity=0.603 Sum_probs=99.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCCC----
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR---- 79 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~---- 79 (163)
..++||| |+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+.+.. ++.|++|||||+|+.+++
T Consensus 49 v~l~i~D--t~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~ 125 (176)
T cd04133 49 VNLGLWD--TAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLA 125 (176)
T ss_pred EEEEEEE--CCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhh
Confidence 3455666 999999999999999999999999999999999998 67999997765 579999999999996542
Q ss_pred ------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 80 ------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 80 ------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+..+++..+++..+. .|+|+||+++.||+++|+.+++.+
T Consensus 126 ~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 126 DHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 4788999999999998 599999999999999999999876
No 31
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=6.3e-25 Score=154.86 Aligned_cols=114 Identities=66% Similarity=1.040 Sum_probs=103.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.....++.|+++|+||+|+.+.+.++.++
T Consensus 52 ~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~ 129 (166)
T cd04122 52 KLQIWD--TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE 129 (166)
T ss_pred EEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHH
Confidence 345555 999999999999999999999999999999999999999999877665678999999999998877788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+..+++..+++++++||+++.||+++|.+++..+.+
T Consensus 130 ~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 130 AKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988754
No 32
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.93 E-value=5.2e-25 Score=158.01 Aligned_cols=111 Identities=28% Similarity=0.549 Sum_probs=99.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------- 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~------- 77 (163)
.++||| |+|+++|..+++.+++++|++|+|||++++.||+.+ ..|++.+.+.. +..|++|||||.|+.+
T Consensus 54 ~l~iwD--taG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~ 130 (182)
T cd04172 54 ELSLWD--TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVE 130 (182)
T ss_pred EEEEEE--CCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHH
Confidence 456666 999999999999999999999999999999999997 78999998866 5799999999999854
Q ss_pred -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHH
Q 031249 78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKI 119 (163)
Q Consensus 78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~ 119 (163)
.+.++.+++.++++..++ +|+|+||+++.| |+++|..+++.+
T Consensus 131 ~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 131 LSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 245889999999999996 899999999998 999999998854
No 33
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=1.8e-24 Score=157.20 Aligned_cols=118 Identities=37% Similarity=0.675 Sum_probs=104.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... ...|++||+||+|+.+...+..++
T Consensus 56 ~l~l~D--~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~ 132 (199)
T cd04110 56 KLQIWD--TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETED 132 (199)
T ss_pred EEEEEe--CCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHH
Confidence 455666 99999999999999999999999999999999999999999987755 568999999999998766777888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
+..++...+.+++++||+++.||+++|++|.+.+.......
T Consensus 133 ~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~ 173 (199)
T cd04110 133 AYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence 88899888999999999999999999999999997654433
No 34
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.9e-24 Score=156.06 Aligned_cols=118 Identities=43% Similarity=0.762 Sum_probs=105.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..+|+.+..|+..+.+....+.|+++|+||.|+..++.+..++
T Consensus 51 ~~~i~D--t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~ 128 (191)
T cd04112 51 KLQIWD--TAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRED 128 (191)
T ss_pred EEEEEe--CCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHH
Confidence 455666 999999999999999999999999999999999999999999988765678999999999997667778888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+..+++.++.+++++||+++.|++++|.+|++.+.....+
T Consensus 129 ~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 129 GERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999998766433
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=1.4e-24 Score=154.43 Aligned_cols=115 Identities=29% Similarity=0.462 Sum_probs=103.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.||+.+..|+..+.+... +++|+++|+||+|+.+.+.++.+
T Consensus 51 ~l~i~D--t~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~ 128 (172)
T cd04141 51 LLDILD--TAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE 128 (172)
T ss_pred EEEEEe--CCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH
Confidence 456666 999999999999999999999999999999999999999888876543 57999999999999777788889
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
++..+++..+++++++||+++.||+++|++|++.+.+.
T Consensus 129 ~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 129 EGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887763
No 36
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.93 E-value=1.5e-24 Score=156.73 Aligned_cols=113 Identities=26% Similarity=0.526 Sum_probs=99.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |+|+++|..+++.|++++|++|+|||++++.||+.+. .|+..+.+.. ++.|++|||||.|+.+.
T Consensus 52 ~l~i~D--t~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~ 128 (191)
T cd01875 52 SLNLWD--TAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKK 128 (191)
T ss_pred EEEEEE--CCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHH
Confidence 456666 9999999999999999999999999999999999997 5888887654 57999999999999653
Q ss_pred ------CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..+++..+++..+ .+++++||+++.||+++|+++++.+..
T Consensus 129 ~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 129 LKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 2367788999999988 589999999999999999999988754
No 37
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=5.2e-24 Score=157.04 Aligned_cols=117 Identities=26% Similarity=0.513 Sum_probs=98.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.+.||| |+|+++|..+++.+++++|++|+|||++++++|+.+. .|...+.... ++.|++|||||+|+.++
T Consensus 50 ~L~iwD--t~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~ 126 (222)
T cd04173 50 ELNMWD--TSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRE 126 (222)
T ss_pred EEEEEe--CCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhh
Confidence 455666 9999999999999999999999999999999999985 5776665544 67999999999998542
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHHHHHHhh
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~~~~~~~ 125 (163)
..+..+++..++++.+. +|+||||+++.+ |+++|..+....+.....
T Consensus 127 ~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 127 LSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred hhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCC
Confidence 13677899999999995 899999999885 999999999987665443
No 38
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=2e-24 Score=154.51 Aligned_cols=112 Identities=30% Similarity=0.560 Sum_probs=99.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------- 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~------- 77 (163)
.++||| |+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.+.. +..|++|||||.|+.+
T Consensus 50 ~l~iwD--t~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~ 126 (178)
T cd04131 50 ELSLWD--TSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLME 126 (178)
T ss_pred EEEEEE--CCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHH
Confidence 455666 999999999999999999999999999999999996 78999998876 5789999999999854
Q ss_pred -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCC-HHHHHHHHHHHHH
Q 031249 78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQN-VEEAFIKTAAKIL 120 (163)
Q Consensus 78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~lf~~l~~~~~ 120 (163)
.+.++.+++.++++..++ +|+|+||+++.+ |+++|..+++..+
T Consensus 127 ~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 127 LSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 235889999999999997 799999999995 9999999998644
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=3.2e-24 Score=152.98 Aligned_cols=116 Identities=36% Similarity=0.664 Sum_probs=104.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..++||| |+|+++|..++..+++++|++++|||++++++|..+..|+..+..... ++.|+++|+||+|+.+.+.+..
T Consensus 63 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~ 140 (180)
T cd04127 63 IHLQLWD--TAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE 140 (180)
T ss_pred EEEEEEe--CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH
Confidence 3456666 999999999999999999999999999999999999999999977543 4689999999999987777888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+++..+++..+++++++||+++.|++++|++|++.+.++
T Consensus 141 ~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 141 EQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999888754
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=6.7e-24 Score=152.91 Aligned_cols=120 Identities=37% Similarity=0.587 Sum_probs=106.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |||+++|..++..+++++|++|+|||+++.++|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+
T Consensus 54 ~l~i~D--t~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~ 131 (189)
T PTZ00369 54 LLDILD--TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG 131 (189)
T ss_pred EEEEEe--CCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 456677 999999999999999999999999999999999999999999877643 46899999999999776677888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
++..+++.++.+++++||+++.||+++|.+|++.+.+...+..
T Consensus 132 ~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~~ 174 (189)
T PTZ00369 132 EGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDM 174 (189)
T ss_pred HHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 8888888889999999999999999999999999887655553
No 41
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.4e-23 Score=150.70 Aligned_cols=118 Identities=31% Similarity=0.546 Sum_probs=101.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC----Cc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~----~~ 80 (163)
.++||| |||+++|..++..+++++|++|||||+++..||+.+. .|+..+.... ++.|+++|+||.|+... +.
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 126 (187)
T cd04132 50 ELALWD--TAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRK 126 (187)
T ss_pred EEEEEE--CCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCC
Confidence 456666 9999999999999999999999999999999999986 4888776544 56899999999998553 24
Q ss_pred cCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Q 031249 81 VSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 81 v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (163)
+..+++..++..++. +++++||+++.||+++|..+++.+.....+.
T Consensus 127 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 127 VTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred cCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 667889999999998 8999999999999999999999988766554
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=1.3e-23 Score=147.74 Aligned_cols=111 Identities=38% Similarity=0.723 Sum_probs=101.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++++|||++++.||+.+..|++.+........|+++|+||.|+.+.+.+..++
T Consensus 50 ~l~i~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~ 127 (161)
T cd04117 50 RIQIWD--TAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQ 127 (161)
T ss_pred EEEEEe--CCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence 456666 999999999999999999999999999999999999999999987665579999999999998777788899
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+..+++..+.+++++||+++.||+++|.+|++.
T Consensus 128 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 128 GNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999864
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=1.7e-23 Score=147.81 Aligned_cols=114 Identities=50% Similarity=0.880 Sum_probs=104.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++|+|||+++.++|..+..|+..+.+....+.|+++|+||.|+.+.+.+..++
T Consensus 53 ~l~l~D--~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 130 (167)
T cd01867 53 KLQIWD--TAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEE 130 (167)
T ss_pred EEEEEe--CCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH
Confidence 566777 999999999999999999999999999999999999999999987665679999999999998777778888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+..++..++.+++++||+++.||+++|+++++.+..
T Consensus 131 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 131 GEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999998864
No 44
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=2e-23 Score=147.18 Aligned_cols=114 Identities=42% Similarity=0.737 Sum_probs=103.4
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+++|| |+|+++|..++..+++++|++++|||+++..+|+.+..|++.+.+......|+++|+||+|+.+.+.+..+
T Consensus 50 ~~~~l~D--t~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 127 (165)
T cd01865 50 VKLQIWD--TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSE 127 (165)
T ss_pred EEEEEEE--CCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHH
Confidence 4567777 99999999999999999999999999999999999999999998776567899999999999877777788
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++..+++..+++++++||+++.|++++|++++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 128 RGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 888899989999999999999999999999988654
No 45
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=1.2e-23 Score=152.48 Aligned_cols=108 Identities=25% Similarity=0.437 Sum_probs=94.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------- 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~------- 77 (163)
.++||| |||+++ .+...+++++|++|+|||++++.||+.+. .|+..+.... ++.|++|||||+|+..
T Consensus 67 ~l~iwD--TaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~ 141 (195)
T cd01873 67 SLRLWD--TFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVN 141 (195)
T ss_pred EEEEEe--CCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhh
Confidence 455555 999986 35677999999999999999999999997 5999887765 5789999999999853
Q ss_pred ------------CCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 78 ------------RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 78 ------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.+.++.+++..+++.++++|+|+||+++.||+++|+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 142 RARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred hcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999864
No 46
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.91 E-value=2.1e-23 Score=146.21 Aligned_cols=114 Identities=39% Similarity=0.712 Sum_probs=106.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| ++|+++|..++..+++++|++|+|||+++++||+.+..|++.+....+.+.|++|+|||.|+.+.++++.+
T Consensus 48 ~~l~i~D--~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~ 125 (162)
T PF00071_consen 48 VNLEIWD--TSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVE 125 (162)
T ss_dssp EEEEEEE--ETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHH
T ss_pred ccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhh
Confidence 3566776 89999999999999999999999999999999999999999999988657999999999999877889999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++..+++.++.+|+++||+++.+|.++|..+++.+.
T Consensus 126 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 126 EAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.91 E-value=1.3e-23 Score=149.75 Aligned_cols=111 Identities=22% Similarity=0.465 Sum_probs=96.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |+|+++|..++..+++++|++|||||++++++|+.+. .|+..+.... ++.|++||+||+|+...
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~ 126 (175)
T cd01874 50 TLGLFD--TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEK 126 (175)
T ss_pred EEEEEE--CCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHH
Confidence 455666 9999999999999999999999999999999999997 4888887654 56899999999998543
Q ss_pred ------CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+..+++..+++..+ ..|+++||++|.|++++|+.++...
T Consensus 127 l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 127 LAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred hhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4577888999998887 6899999999999999999998754
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=1.8e-23 Score=147.05 Aligned_cols=113 Identities=36% Similarity=0.582 Sum_probs=100.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |+|+++|..++..+++++|++++|||+++..+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (164)
T cd04175 50 MLEILD--TAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE 127 (164)
T ss_pred EEEEEE--CCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHH
Confidence 344565 999999999999999999999999999999999999999999876543 57999999999999776677777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++..+++..+++++++||+++.|++++|.++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 128 QGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 888888888999999999999999999999987653
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=2e-23 Score=146.27 Aligned_cols=112 Identities=37% Similarity=0.597 Sum_probs=99.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |||+++|..++..+++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 127 (163)
T cd04136 50 MLEILD--TAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE 127 (163)
T ss_pred EEEEEE--CCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHH
Confidence 345666 999999999999999999999999999999999999999999977543 56899999999999776677777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..+++.++.+++++||+++.|+.++|+++++.+
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 128 EGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 88888888888999999999999999999998754
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=2.6e-23 Score=146.42 Aligned_cols=113 Identities=49% Similarity=0.862 Sum_probs=103.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||++++++|..+..|+..+.....++.|+++++||.|+.+.+.+..++
T Consensus 52 ~~~i~D--~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~ 129 (166)
T cd01869 52 KLQIWD--TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSE 129 (166)
T ss_pred EEEEEE--CCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHH
Confidence 567777 999999999999999999999999999999999999999999987665678999999999997777788889
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..+++..+++++++||+++.|++++|.++.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 130 AQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998775
No 51
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=2.8e-23 Score=151.01 Aligned_cols=113 Identities=29% Similarity=0.566 Sum_probs=98.8
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..|++++|++|+|||+++..||..+..|+.++.+.. .++|++|||||+|+.. +.+..+
T Consensus 44 ~~l~iwD--t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~ 119 (200)
T smart00176 44 IRFNVWD--TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK 119 (200)
T ss_pred EEEEEEE--CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH
Confidence 4566676 99999999999999999999999999999999999999999998765 5799999999999854 445544
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
. ..+++..++.|+++||+++.||.++|++|++.+.+.
T Consensus 120 ~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 120 S-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred H-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 4 467788889999999999999999999999988654
No 52
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=8.1e-23 Score=149.68 Aligned_cols=120 Identities=48% Similarity=0.688 Sum_probs=100.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
+..+.++.|||||+++|..++..+++++|++|+|||+++.++|..+.. |...+..... .+.|+++|+||.|+...+.+
T Consensus 59 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i 138 (211)
T PLN03118 59 GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV 138 (211)
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc
Confidence 334444444499999999999999999999999999999999999976 5555544332 45799999999999876777
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
..++...++...++.++++||+++.|++++|++|...+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 139 SREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 788888888888999999999999999999999999987653
No 53
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=1.4e-22 Score=146.20 Aligned_cols=115 Identities=32% Similarity=0.581 Sum_probs=99.7
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC----CccC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVS 82 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~----~~v~ 82 (163)
++||| |+|+++|..++..+++++|++++|||+++..+|+.+..|++.+.... ++.|+++|+||.|+.+. +.+.
T Consensus 52 l~i~D--~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~ 128 (193)
T cd04118 52 LGIWD--TAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVD 128 (193)
T ss_pred EEEEE--CCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccC
Confidence 34565 99999999999999999999999999999999999999999987754 56899999999998542 3455
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
.+++..++..++.+++++||+++.|++++|+++.+.+.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 129 FHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 677788888888999999999999999999999999976553
No 54
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.91 E-value=4.2e-23 Score=149.43 Aligned_cols=123 Identities=36% Similarity=0.527 Sum_probs=112.4
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~ 80 (163)
+.+..+.+..+||+|++.|..|...|++++|+|++||++++..||+.+..+++.+.+... ..+|+++||||+|+...+.
T Consensus 46 v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~ 125 (196)
T KOG0395|consen 46 VDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ 125 (196)
T ss_pred ECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc
Confidence 356788888999999999999999999999999999999999999999999999955443 4589999999999988899
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
++.+++..++..++++|+|+||+.+.+|+++|..|++.+.....
T Consensus 126 V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 126 VSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred cCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999888333
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=5.9e-23 Score=147.37 Aligned_cols=113 Identities=25% Similarity=0.426 Sum_probs=96.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC-----CCc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-----RRA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~-----~~~ 80 (163)
.++||| |+|+++|..++..+++++|++++|||++++.+|..+..|+..+.+......| ++|+||+|+.. .+.
T Consensus 50 ~l~iwD--t~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~ 126 (182)
T cd04128 50 TFSIWD--LGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQE 126 (182)
T ss_pred EEEEEe--CCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhh
Confidence 456666 9999999999999999999999999999999999999999999876544567 68899999842 111
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
...+++..+++..+.+++++||+++.||+++|+++++.+.+
T Consensus 127 ~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 127 EITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22456778888889999999999999999999999988865
No 56
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.90 E-value=4.8e-23 Score=144.61 Aligned_cols=112 Identities=30% Similarity=0.500 Sum_probs=99.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |+|+++|..++..+++++|++++|||+++..+|..+..|+..+.+... .++|+++|+||+|+.+.+.+...
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~ 127 (163)
T cd04176 50 VLEILD--TAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSA 127 (163)
T ss_pred EEEEEE--CCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHH
Confidence 356677 999999999999999999999999999999999999999999977543 57999999999999766667777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..++..++.+++++||+++.|+.++|.++++++
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 128 EGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 78888888888999999999999999999998754
No 57
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.90 E-value=5.7e-23 Score=146.38 Aligned_cols=110 Identities=28% Similarity=0.519 Sum_probs=96.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |+|+++|..++..+++++|++|||||+++++||..+. .|+..+.... ++.|++||+||.|+.+.
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~ 126 (174)
T cd01871 50 NLGLWD--TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK 126 (174)
T ss_pred EEEEEE--CCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHH
Confidence 455666 9999999999999999999999999999999999986 5888887654 57999999999998542
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+.++.+++..+++.++. +++++||+++.||+++|+.+++.
T Consensus 127 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 127 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 24788899999999984 89999999999999999999864
No 58
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.90 E-value=1.5e-22 Score=143.04 Aligned_cols=115 Identities=76% Similarity=1.157 Sum_probs=104.4
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |+|+++|..++..+++.+|+++||||++++.+|..+..|+..+.+...++.|+++|+||.|+.+.+.+..+
T Consensus 53 ~~~~i~D--t~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 130 (168)
T cd01866 53 IKLQIWD--TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYE 130 (168)
T ss_pred EEEEEEE--CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHH
Confidence 3566777 99999999999999999999999999999999999999999998876577999999999999866678888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
++..++...++.++++||+++.|++++|.++.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 131 EGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8888999899999999999999999999999888754
No 59
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.90 E-value=1.6e-22 Score=141.89 Aligned_cols=113 Identities=34% Similarity=0.666 Sum_probs=101.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-----CCCeEEEEeeCCCCCCCCc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~D~~~~~~ 80 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+... ...|+++|+||+|+.+++.
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 127 (168)
T cd04119 50 RVNFFD--LSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA 127 (168)
T ss_pred EEEEEE--CCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccc
Confidence 455666 999999999999999999999999999999999999999999987653 3689999999999976566
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..++...++...+++++++||+++.|++++|++|++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 128 VSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7888888899888999999999999999999999998875
No 60
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=8.3e-23 Score=147.27 Aligned_cols=113 Identities=34% Similarity=0.601 Sum_probs=97.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC----
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR---- 79 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~---- 79 (163)
..++||| |+|+++|..++..+++++|++|+|||+++..+|+.+. .|+..+.... ++.|++||+||+|+.+.+
T Consensus 48 ~~l~i~D--t~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~ 124 (189)
T cd04134 48 IELSLWD--TAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERD 124 (189)
T ss_pred EEEEEEE--CCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHH
Confidence 3466666 9999999999999999999999999999999999886 5898887754 579999999999986543
Q ss_pred --------ccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 80 --------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 80 --------~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.+..+++..+++..+ ++|+++||+++.||+++|.++++.+.
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 125 DLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 355677788888777 68999999999999999999998886
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.90 E-value=2.6e-22 Score=141.07 Aligned_cols=112 Identities=54% Similarity=0.920 Sum_probs=102.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |||+++|..++..++++++++|+|||+++..+|..+..|+..+.+....+.|+++|+||.|+.+.+.+..++
T Consensus 53 ~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~ 130 (165)
T cd01868 53 KAQIWD--TAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEE 130 (165)
T ss_pred EEEEEe--CCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHH
Confidence 567777 999999999999999999999999999999999999999999988765568999999999998777778888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...++...+++++++||+++.|++++|++++..+
T Consensus 131 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 131 AKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 8889888889999999999999999999998765
No 62
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=2.3e-22 Score=140.78 Aligned_cols=111 Identities=36% Similarity=0.621 Sum_probs=100.0
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||+++|..++..+++++|++++|||++++++|..+..|+..+.+.. .+.|+++|+||.|+..+..+..+
T Consensus 51 ~~~~i~D--~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~ 127 (162)
T cd04106 51 VRLMLWD--TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNE 127 (162)
T ss_pred EEEEEee--CCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHH
Confidence 3566666 99999999999999999999999999999999999999999987654 56999999999999777778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
++..+++..+++++++||+++.|++++|++|...
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 128 EAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999998753
No 63
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=1.5e-22 Score=149.24 Aligned_cols=113 Identities=30% Similarity=0.586 Sum_probs=98.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..|++++|++|+|||+++..+|..+..|+..+.+.. .+.|++|||||+|+.+ +.+..+
T Consensus 62 ~~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~ 137 (219)
T PLN03071 62 IRFYCWD--TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK 137 (219)
T ss_pred EEEEEEE--CCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHH
Confidence 3566666 99999999999999999999999999999999999999999998765 5799999999999854 345555
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
++ .+++..+++|+++||+++.||+++|++|++.+.+.
T Consensus 138 ~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 138 QV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 55 67777889999999999999999999999988654
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.89 E-value=3e-22 Score=140.58 Aligned_cols=113 Identities=40% Similarity=0.626 Sum_probs=100.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+++|| |||+++|..++..+++++|++++|||+++.++|+.+..|+..+.+... .+.|+++|+||+|+...+.+..+
T Consensus 49 ~l~i~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~ 126 (164)
T smart00173 49 LLDILD--TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTE 126 (164)
T ss_pred EEEEEE--CCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHH
Confidence 455666 999999999999999999999999999999999999999988876543 46899999999999776667778
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++..+++..+.+++++||+++.|++++|++|++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 127 EGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 888888888999999999999999999999998764
No 65
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.89 E-value=1.5e-22 Score=143.52 Aligned_cols=112 Identities=31% Similarity=0.558 Sum_probs=98.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR----- 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~----- 79 (163)
.+++|| |+|+++|..++..+++++|++|+|||+++.+||+.+. .|+..+.+.. ++.|++||+||+|+....
T Consensus 47 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~ 123 (174)
T smart00174 47 ELGLWD--TAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRE 123 (174)
T ss_pred EEEEEE--CCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhh
Confidence 466666 9999999999999999999999999999999999986 5999887765 579999999999986522
Q ss_pred -------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 80 -------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 80 -------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.++.+++..+++..+. .++++||+++.||+++|+.+++.+.
T Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 124 LSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred hhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 3777888899999986 8999999999999999999998764
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.89 E-value=2.5e-22 Score=140.75 Aligned_cols=112 Identities=33% Similarity=0.563 Sum_probs=99.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+++|| |||+++|..++..+++++|++++|||+++..+|..+..|+..+.+... .+.|+++++||+|+...+.+..+
T Consensus 51 ~~~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~ 128 (164)
T cd04145 51 ILDILD--TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSRE 128 (164)
T ss_pred EEEEEE--CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHH
Confidence 456676 999999999999999999999999999999999999999999876532 56899999999999776667778
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..+++..+++++++||+++.||+++|+++++.+
T Consensus 129 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 129 EGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 88888888889999999999999999999998764
No 67
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.89 E-value=3.3e-22 Score=140.04 Aligned_cols=112 Identities=62% Similarity=0.959 Sum_probs=102.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |+|+++|..++..+++++|++|+|||+++..+|..+..|+..+.....++.|++|++||.|+.+.+.+..+
T Consensus 49 ~~l~l~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 126 (161)
T cd04113 49 VKLQIWD--TAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFL 126 (161)
T ss_pred EEEEEEE--CcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHH
Confidence 3567777 99999999999999999999999999999999999999999988776678999999999999777778888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
++..++...+..++++||+++.|++++|+++++.
T Consensus 127 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 127 EASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999875
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=2.1e-22 Score=141.87 Aligned_cols=110 Identities=32% Similarity=0.472 Sum_probs=97.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+++|| |+|+++|..++..+++.+|++|+|||+++.++|+.+..|++.+.+... ++.|+++|+||+|+.+.+++.
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 127 (165)
T cd04140 50 TLQITD--TTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVS 127 (165)
T ss_pred EEEEEE--CCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeec
Confidence 456666 999999999999999999999999999999999999999888866432 568999999999997766777
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.+++..++..++++++++||+++.|++++|++|+.
T Consensus 128 ~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 128 SNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 88888888888999999999999999999999975
No 69
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=5.3e-22 Score=139.71 Aligned_cols=111 Identities=47% Similarity=0.835 Sum_probs=100.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++++|||++++.+|..+..|+..+......+.|+++|+||+|+.+.+.+..++
T Consensus 53 ~l~i~D--~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 130 (165)
T cd01864 53 KLQIWD--TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEE 130 (165)
T ss_pred EEEEEE--CCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHH
Confidence 566777 999999999999999999999999999999999999999999987655679999999999998777777888
Q ss_pred HHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 86 GEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 86 ~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+..+++..+. .++++||+++.|++++|+++.+.
T Consensus 131 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 131 ACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 8889988886 58999999999999999999865
No 70
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=7.7e-22 Score=140.02 Aligned_cols=114 Identities=32% Similarity=0.594 Sum_probs=97.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCc--cC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~--v~ 82 (163)
.++||| |+|+++|..++..+++++|++++|||++++++|..+..|+..+.+... ...|+++|+||.|+.+... +.
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~ 127 (170)
T cd04108 50 SLQLWD--TAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALM 127 (170)
T ss_pred EEEEEe--CCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccccc
Confidence 456666 999999999999999999999999999999999999999999866543 3478999999999855333 34
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.+++..++..++.+++++||+++.|++++|+.|.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 128 EQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 566778888888899999999999999999999888754
No 71
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.89 E-value=6.4e-22 Score=139.84 Aligned_cols=112 Identities=32% Similarity=0.598 Sum_probs=97.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+++|| |+|++++..++..+++.+|++|+|||+++..+|..+..|+..+..... ++|+++|+||+|+.+ +.+. .
T Consensus 49 ~~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~ 123 (166)
T cd00877 49 IRFNVWD--TAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-A 123 (166)
T ss_pred EEEEEEE--CCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-H
Confidence 3556666 999999999999999999999999999999999999999999988763 799999999999964 3343 3
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+...+++..+++++++||+++.||+++|++|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 124 KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 4456777778899999999999999999999988864
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=9.2e-22 Score=138.10 Aligned_cols=112 Identities=32% Similarity=0.571 Sum_probs=99.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+++|| |+|++++..++..+++++|++++|||+++..+|..+..|++.+.+.. ...|+++|+||.|+.+..++...
T Consensus 52 ~~l~i~D--t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 128 (164)
T cd04101 52 VELFIFD--SAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDA 128 (164)
T ss_pred EEEEEEE--CCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHH
Confidence 3455666 99999999999999999999999999999999999999999988765 56899999999999776677777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..+....+.+++++||+++.|++++|+.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 129 QAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 77778888888999999999999999999998865
No 73
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=1.3e-21 Score=138.30 Aligned_cols=110 Identities=35% Similarity=0.649 Sum_probs=97.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v 81 (163)
.++||| |+|+++|..++..+++++|++++|||+++..+|+.+..|+..+..... .+.|+++|+||.|+. .+.+
T Consensus 55 ~l~i~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~ 131 (170)
T cd04116 55 TLQIWD--TAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQV 131 (170)
T ss_pred EEEEEe--CCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-cccc
Confidence 456666 999999999999999999999999999999999999999998866442 458999999999986 4567
Q ss_pred CHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+++.++++.++. +++++||+++.|+.++|.++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 132 STEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 78889999988884 79999999999999999999875
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=1.1e-21 Score=137.80 Aligned_cols=111 Identities=33% Similarity=0.574 Sum_probs=95.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+.. ++.|+++|+||.|+.. .. .++
T Consensus 50 ~~~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~--~~-~~~ 123 (161)
T cd04124 50 LVDFWD--TAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDP--SV-TQK 123 (161)
T ss_pred EEEEEe--CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCch--hH-HHH
Confidence 455666 99999999999999999999999999999999999999999997754 5689999999999843 12 344
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
...++...+++++++||+++.|++++|+.+++.+.++
T Consensus 124 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 124 KFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 5566777788999999999999999999999888765
No 75
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.88 E-value=1.2e-21 Score=136.64 Aligned_cols=111 Identities=36% Similarity=0.628 Sum_probs=98.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+++|| |+|+++|..++..|++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.+ +.+...
T Consensus 50 ~~~i~D--t~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~ 126 (162)
T cd04138 50 LLDILD--TAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSR 126 (162)
T ss_pred EEEEEE--CCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHH
Confidence 356677 999999999999999999999999999999999999999999877643 5689999999999865 456677
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++..+++..+.+++++||+++.|++++|+++++.+
T Consensus 127 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 127 QGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 88888888899999999999999999999998654
No 76
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=2e-21 Score=136.02 Aligned_cols=115 Identities=60% Similarity=0.946 Sum_probs=104.0
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+++|| |+|+++|..++..+++.+|++|+|||++++.+++.+..|+..+.....+..|+++++||+|+....++..+
T Consensus 49 ~~~~l~D--~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~ 126 (164)
T smart00175 49 VKLQIWD--TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSRE 126 (164)
T ss_pred EEEEEEE--CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHH
Confidence 3566777 99999999999999999999999999999999999999999998876567999999999998766677888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.+..+++..+++++++|++++.|++++|+++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 127 EAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 8888999899999999999999999999999988754
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=1.7e-21 Score=137.94 Aligned_cols=113 Identities=36% Similarity=0.701 Sum_probs=100.5
Q ss_pred ceeeEeeecccchhhhh-hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 5 QESFFWSLLQAGQESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~-~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
..++||| |+|+++|. .++..+++++|++++|||++++.+|..+..|+..+..... .++|+++|+||.|+.+.+.+.
T Consensus 51 ~~~~i~D--t~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 128 (170)
T cd04115 51 IKVQLWD--TAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP 128 (170)
T ss_pred EEEEEEe--CCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC
Confidence 3566666 99999997 5889999999999999999999999999999999977643 569999999999998777788
Q ss_pred HHHHHHHHHHcCCeEEEEcCCC---CCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASART---AQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~lf~~l~~~~ 119 (163)
.+++..+++..+++++++||++ +.+++++|..+++.+
T Consensus 129 ~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 129 TDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 8888899999999999999999 899999999998765
No 78
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.88 E-value=1.7e-21 Score=137.63 Aligned_cols=114 Identities=34% Similarity=0.566 Sum_probs=101.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..+++|| |+|+++|..+++.+++++|++++|||++++++|+.+..|...+.+... .+.|+++++||.|+.+.+.+..
T Consensus 49 ~~~~i~D--t~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~ 126 (168)
T cd04177 49 CDLEILD--TAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR 126 (168)
T ss_pred EEEEEEe--CCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH
Confidence 3567777 999999999999999999999999999999999999999999876433 5799999999999977677777
Q ss_pred HHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+++..+++.++ ++++++||+++.||+++|.+++.+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 127 EDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 88888888888 78999999999999999999998765
No 79
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=3e-21 Score=135.23 Aligned_cols=113 Identities=50% Similarity=0.854 Sum_probs=102.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||++++..++..+++++|++|||||++++++|..+..|+..+.....+..|+++++||+|+...+.++.+
T Consensus 50 ~~~~i~D--~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 127 (163)
T cd01860 50 VKFEIWD--TAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTE 127 (163)
T ss_pred EEEEEEe--CCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHH
Confidence 3566776 99999999999999999999999999999999999999999998776567999999999999766677888
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+...++...++.++++||+++.|+.++|++|++.+
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 128 EAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 88889998899999999999999999999998875
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.88 E-value=2.7e-21 Score=144.83 Aligned_cols=138 Identities=20% Similarity=0.294 Sum_probs=106.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh---------cCCCCeEEEEeeCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCD 74 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ilv~nK~D 74 (163)
+..++|..|||+|+++|..++..++.++|++|+|||+++.+||+.+..|++++.+. ...++|++||+||+|
T Consensus 45 ~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~D 124 (247)
T cd04143 45 GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKAD 124 (247)
T ss_pred CEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECcc
Confidence 43444444449999999999999999999999999999999999999999998654 224689999999999
Q ss_pred CCCCCccCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceeccCC
Q 031249 75 LAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR 143 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
+.+.+++..+++..++.. .++.++++||+++.||+++|++|+.... .........+...++..+...
T Consensus 125 l~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~--~p~e~~~~~~~~~~~~~~~~~ 192 (247)
T cd04143 125 RDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK--LPNEMSPSLHRKISVQYGDAL 192 (247)
T ss_pred chhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc--cccccCccccceeeeeecccc
Confidence 976667788888877654 4678999999999999999999998653 222223444455555555543
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=1.8e-21 Score=137.04 Aligned_cols=113 Identities=35% Similarity=0.491 Sum_probs=98.0
Q ss_pred eeeEeeecccchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.++||| |+|++++ ...+..+++++|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+.
T Consensus 48 ~~~i~D--~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 125 (165)
T cd04146 48 SLEILD--TAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS 125 (165)
T ss_pred EEEEEE--CCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC
Confidence 356666 9999863 5567889999999999999999999999999999887754 2469999999999987667788
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKIL 120 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~lf~~l~~~~~ 120 (163)
.+++..+++..+.+++++||+++ .||+++|+.+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 126 TEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 88889999999999999999999 599999999998764
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=3.2e-21 Score=134.82 Aligned_cols=111 Identities=45% Similarity=0.754 Sum_probs=100.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |||++++..++..+++++|++++|||++++.+|+.+..|+..+......+.|+++++||+|+.+.+.+..++
T Consensus 50 ~l~~~D--~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~ 127 (161)
T cd01861 50 RLQLWD--TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEE 127 (161)
T ss_pred EEEEEE--CCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHH
Confidence 466777 999999999999999999999999999999999999999999977665569999999999997667778888
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
...+++..+.+++++||+++.|++++|+++.+.
T Consensus 128 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 128 GEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 888888889999999999999999999999764
No 83
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.87 E-value=2.5e-21 Score=137.46 Aligned_cols=109 Identities=28% Similarity=0.521 Sum_probs=94.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC-------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------- 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~------- 77 (163)
.++||| |+|+++|..++..+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++++||.|+.+
T Consensus 49 ~~~i~D--t~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 125 (173)
T cd04130 49 RLQLCD--TAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQ 125 (173)
T ss_pred EEEEEE--CCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHH
Confidence 455666 9999999999999999999999999999999999985 6888887643 5689999999999853
Q ss_pred -----CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q 031249 78 -----RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 78 -----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.+.+..+++..+++..+. .++++||+++.||+++|+.++-
T Consensus 126 ~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 126 LARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 346778889999999888 7999999999999999998763
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.87 E-value=4.9e-21 Score=133.62 Aligned_cols=112 Identities=40% Similarity=0.752 Sum_probs=101.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.+|| |+|++++..+++.+++++|++++|||+++..+++.+..|++.+.+....++|+++++||+|+...+.+..++
T Consensus 50 ~~~~~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~ 127 (162)
T cd04123 50 DLAIWD--TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSE 127 (162)
T ss_pred EEEEEE--CCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHH
Confidence 466777 999999999999999999999999999999999999999999988776679999999999998766777788
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+..+++..+.+++++|++++.|++++|+++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 128 AEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 8888888999999999999999999999998765
No 85
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.87 E-value=2.6e-21 Score=135.86 Aligned_cols=106 Identities=16% Similarity=0.319 Sum_probs=91.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCC--CCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~--~~~~v~ 82 (163)
.++||| |+|++. ..+++++|++++|||++++.||+.+..|+..+..... +..|+++||||.|+. ..+.+.
T Consensus 48 ~l~i~D--~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~ 120 (158)
T cd04103 48 LLLIRD--EGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID 120 (158)
T ss_pred EEEEEE--CCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC
Confidence 466677 999976 4577899999999999999999999999999987654 568999999999984 246788
Q ss_pred HHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 83 KEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.+++.++++.. ++.|++|||+++.||+++|..+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 121 DARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 88888898876 4899999999999999999999864
No 86
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=5.5e-21 Score=137.00 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=89.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |||+++|..+|..+++++|++|||||+++.+++..+..++..+.... .+++|++|++||+|++.. ..
T Consensus 60 ~~~~~i~D--~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~ 135 (181)
T PLN00223 60 NISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MN 135 (181)
T ss_pred CEEEEEEE--CCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CC
Confidence 45678888 99999999999999999999999999999999998888777764422 246899999999998653 34
Q ss_pred HHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENG-----LLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.++....+.-.. +.++++||++|+||.++|++|.+.+..
T Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 444333332111 235689999999999999999887654
No 87
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.86 E-value=3.2e-21 Score=136.60 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=90.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |+|+++|..+|..+++++|++|||||++++.+|..+..|+..+.... ..++|++||+||+|+.+ .+.
T Consensus 52 ~~~~~l~D--t~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~ 127 (168)
T cd04149 52 NVKFNVWD--VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMK 127 (168)
T ss_pred CEEEEEEE--CCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCC
Confidence 45678888 99999999999999999999999999999999999888887775432 25689999999999854 356
Q ss_pred HHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAKE-----NGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.+++..++.. ...+++++||++|.||+++|++|.+
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 128 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 6776665432 2246899999999999999999864
No 88
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.86 E-value=7.4e-22 Score=137.54 Aligned_cols=132 Identities=29% Similarity=0.469 Sum_probs=116.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.+..++|| |+|++.|+.+...||++|.+.++||+-+|..||+++..|++.+.... ..+|.++|-||+|+.++..+..
T Consensus 68 dvr~mlWd--tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~ 144 (246)
T KOG4252|consen 68 DVRSMLWD--TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDK 144 (246)
T ss_pred HHHHHHHH--hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcch
Confidence 34567788 99999999999999999999999999999999999999999998876 5699999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhc-ccccccCCCCce
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG-ALDAVNDQSGIK 138 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~-~~~~~~~~~~~~ 138 (163)
.+++.+++.....++.+|++...||..+|..|.+.+.+.+... ....++..++.+
T Consensus 145 ~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn 200 (246)
T KOG4252|consen 145 GEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSN 200 (246)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCC
Confidence 9999999999999999999999999999999999999887763 333344443333
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=1.9e-20 Score=138.22 Aligned_cols=118 Identities=28% Similarity=0.314 Sum_probs=99.8
Q ss_pred eeeEeeecccchhhhhhchhhhcc-CCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYR-GAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~-~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.+.||| |+|++. .+...+++ ++|++++|||+++..+|+.+..|+..+.+... .++|+++|+||+|+.+.+.+..
T Consensus 51 ~l~i~D--t~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~ 126 (221)
T cd04148 51 TLVVID--HWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV 126 (221)
T ss_pred EEEEEe--CCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH
Confidence 455666 999983 34455677 99999999999999999999999999877543 4699999999999977777888
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+++..++..++++++++||+++.||+++|+++++.+.......+
T Consensus 127 ~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~ 170 (221)
T cd04148 127 QEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE 170 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence 88888988889999999999999999999999999976555544
No 90
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=9.8e-21 Score=134.05 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=95.0
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+++|| |||++++..+|..+++++|+++||||++++.+|..+..|+..+.+... .+.|++|++||+|+.+ .++
T Consensus 42 ~~~i~l~D--t~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~ 117 (169)
T cd04158 42 NLKFTIWD--VGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALS 117 (169)
T ss_pred CEEEEEEE--CCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCC
Confidence 45677777 999999999999999999999999999999999999999888865432 4589999999999854 366
Q ss_pred HHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENG------LLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.+++..++...+ +.++++||+++.||+++|++|.+.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 118 VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 777776664332 2588999999999999999998776543
No 91
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=1.7e-20 Score=136.26 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=95.7
Q ss_pred eeeEeeecccchhhhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ilv~nK~D 74 (163)
.++||| |+|.++|.. +...+++++|++|||||++++.||+.+..|++.+.+.. ..++|+++|+||+|
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 50 DLHILD--VPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEe--CCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 455666 898765432 23456799999999999999999999999999887764 35699999999999
Q ss_pred CCCCCccCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 75 LAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+.+.+.+..+++..++. .++++|+++||++|.||+++|+.+++.+..+-..
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 128 QQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred ccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 97766677777777654 5688999999999999999999999888865444
No 92
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.85 E-value=5e-21 Score=136.87 Aligned_cols=116 Identities=34% Similarity=0.589 Sum_probs=102.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.+.||| |||||.|+.+++..|.++|.||++|++++++||+.+.. |+.++++.. +++|+||||+|.|+.++
T Consensus 54 ~L~LwD--TAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~ 130 (198)
T KOG0393|consen 54 ELGLWD--TAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEK 130 (198)
T ss_pred EEeeee--cCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHH
Confidence 345566 99999999999999999999999999999999999755 999999988 78999999999999742
Q ss_pred ------CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 79 ------RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
..++.+++..++++.| ..|+||||+++.|+.++|+..+...+....
T Consensus 131 l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 131 LQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 2477889999999999 559999999999999999999998877544
No 93
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=2.2e-20 Score=132.33 Aligned_cols=110 Identities=25% Similarity=0.489 Sum_probs=96.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC-------
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------- 78 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------- 78 (163)
+++|| |+|+++|..++..+++++|++++|||++++.+|+.+. .|+..+.+. .++.|+++++||+|+.+.
T Consensus 50 ~~i~D--t~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~ 126 (174)
T cd04135 50 LGLYD--TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARL 126 (174)
T ss_pred EEEEe--CCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHH
Confidence 55676 9999999999999999999999999999999999986 588888765 467999999999998543
Q ss_pred -----CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 79 -----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 79 -----~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+..+++..+++..+. +++++||+++.||+++|+.++..+
T Consensus 127 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 127 NDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 35677888899998886 699999999999999999998875
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.85 E-value=5.4e-20 Score=129.81 Aligned_cols=116 Identities=39% Similarity=0.682 Sum_probs=100.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCcc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~v 81 (163)
.+++|| |||++.|..++..+++++|++|+|||++++++|..+..|...+..... .++|+++|+||+|+..++.+
T Consensus 50 ~~~~~D--~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 127 (172)
T cd01862 50 TLQIWD--TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV 127 (172)
T ss_pred EEEEEe--CCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc
Confidence 345666 999999999999999999999999999999999999888887765542 36899999999999755666
Q ss_pred CHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
..++...+++..+ .+++++|++++.|++++|+++.+.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 128 STKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 7788888888887 78999999999999999999999887763
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=5.9e-20 Score=129.47 Aligned_cols=112 Identities=46% Similarity=0.777 Sum_probs=99.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |+|+++|..++..+++.+|++++|||+++..+|..+..|+..+......+.|+++|+||+|+.+.+.+..+.
T Consensus 57 ~~~~~D--~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~ 134 (169)
T cd04114 57 KLQIWD--TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQR 134 (169)
T ss_pred EEEEEE--CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence 456666 999999999999999999999999999999999999999998877665679999999999997767777777
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...+.+....+++++||+++.|+.++|+++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 135 AEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7778777778899999999999999999998764
No 96
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=2.1e-20 Score=131.18 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=85.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
...++||| |+|+++|..+|..+++++|++|||||+++..+|..+..|+..+... .....|++|++||+|+.+. ..
T Consensus 43 ~~~~~l~D--~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 118 (159)
T cd04150 43 NISFTVWD--VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MS 118 (159)
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CC
Confidence 35567777 9999999999999999999999999999999999998887777543 2245899999999998542 33
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.++...... ..++.++++||++|.||+++|++|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 333322221 12334789999999999999999864
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=7.3e-20 Score=128.05 Aligned_cols=111 Identities=46% Similarity=0.830 Sum_probs=98.4
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..++||| |+|+++|..++..+++++|++++|||+++..+|+.+..|+..+.+... .+.|+++|+||+|+.. ..+..
T Consensus 49 ~~~~l~D--~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~ 125 (161)
T cd01863 49 VKLAIWD--TAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTR 125 (161)
T ss_pred EEEEEEE--CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCH
Confidence 3566777 999999999999999999999999999999999999999999877653 5799999999999864 45667
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
++...++...+++++++||+++.|++++|+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 126 EEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 88888998899999999999999999999999865
No 98
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.85 E-value=5e-21 Score=135.07 Aligned_cols=111 Identities=21% Similarity=0.312 Sum_probs=91.2
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+..+++|| |+|+++|..+|..+++++|++|||||+++..+|..+..|+..+.... +++|+++|+||.|+...+.+..
T Consensus 43 ~~~l~i~D--t~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~ 119 (164)
T cd04162 43 DAIMELLE--IGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQE 119 (164)
T ss_pred CeEEEEEE--CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHH
Confidence 45677787 99999999999999999999999999999999999989988886544 5799999999999866443321
Q ss_pred ----HHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHHH
Q 031249 84 ----EEGEQFAKENGLLFLEASART------AQNVEEAFIKTAA 117 (163)
Q Consensus 84 ----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~lf~~l~~ 117 (163)
.++..++++.++.++++||++ ++||+++|+.++.
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 120 IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 123455566678899998888 9999999998863
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.84 E-value=9.3e-20 Score=127.48 Aligned_cols=113 Identities=38% Similarity=0.609 Sum_probs=99.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+++|| |+|++++..++..+++++|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.....
T Consensus 49 ~~~i~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~ 126 (164)
T cd04139 49 QLNILD--TAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSE 126 (164)
T ss_pred EEEEEE--CCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHH
Confidence 456666 999999999999999999999999999999999999999998877643 57999999999999764556677
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+...++..++++++++||+++.|++++|+++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 127 EAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 788888888999999999999999999999987765
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.84 E-value=4.3e-20 Score=131.58 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=88.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
...++||| |||++++..+|..|++++|++|||||++++.+++.+..|+..+.... ..+.|++||+||.|+.+. ..
T Consensus 56 ~~~l~l~D--~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 131 (175)
T smart00177 56 NISFTVWD--VGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MK 131 (175)
T ss_pred CEEEEEEE--CCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CC
Confidence 45677888 99999999999999999999999999999999999988888875432 246899999999998542 23
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+++..... ...+.++++||++|.||+++|++|...+
T Consensus 132 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 344333221 1123477899999999999999997764
No 101
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=6.7e-20 Score=131.44 Aligned_cols=116 Identities=24% Similarity=0.339 Sum_probs=89.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |+|++++..+|..+++++|++|||||+++..+|..+..++..+... .....|++||+||.|+.+ .+.
T Consensus 60 ~~~~~l~D--~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~ 135 (182)
T PTZ00133 60 NLKFTMWD--VGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMS 135 (182)
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCC
Confidence 45677777 9999999999999999999999999999999999988877776443 224589999999999854 233
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
.+++..... ...+.++++||++|.|++++|++|.+.+.+.+
T Consensus 136 ~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 136 TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 343322221 11224678999999999999999998887654
No 102
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.84 E-value=1e-19 Score=130.94 Aligned_cols=113 Identities=29% Similarity=0.540 Sum_probs=96.3
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCC--------
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------- 77 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~-------- 77 (163)
+.+|| |+|+++|..+...+++++|+++++||+++.++|..+. .|+..+.+.. ++.|+++|+||.|+..
T Consensus 51 l~i~D--t~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~ 127 (187)
T cd04129 51 LALWD--TAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEY 127 (187)
T ss_pred EEEEE--CCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCccccccc
Confidence 44555 9999999888888899999999999999999999986 5899887765 4699999999999843
Q ss_pred --CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 78 --RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 78 --~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.+.+..+++..+++..+. +++++||+++.||+++|+++++.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 128 RTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred ccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 244566788889999985 799999999999999999999877543
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=1.5e-19 Score=128.20 Aligned_cols=111 Identities=30% Similarity=0.562 Sum_probs=92.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC------
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------ 78 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~------ 78 (163)
.++||| |+|+++|..++..+++++|++++|||+++.++|+.+. .|+..+.+.. .+.|+++|+||.|+...
T Consensus 50 ~l~i~D--t~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 126 (175)
T cd01870 50 ELALWD--TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRE 126 (175)
T ss_pred EEEEEe--CCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhh
Confidence 345555 9999999999999999999999999999999999885 4888777654 56899999999998542
Q ss_pred ------CccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 79 ------RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 79 ------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..+...++..+++..+. +++++||+++.|++++|+++++.+
T Consensus 127 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 127 LAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 23445677888887775 799999999999999999998764
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=1.6e-19 Score=129.54 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=93.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+++|| |+|+++|..+|..+++++|++++|||+++..++..+..|+.++..... .++|+++|+||+|+.+ ...
T Consensus 51 ~~~l~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~ 126 (183)
T cd04152 51 GITFHFWD--VGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALS 126 (183)
T ss_pred ceEEEEEE--CCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCC
Confidence 34677787 999999999999999999999999999999999998888888765432 4689999999999854 244
Q ss_pred HHHHHHHHHH--c----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 83 KEEGEQFAKE--N----GLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 83 ~~~~~~~~~~--~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
.++...++.. . +.+++++||+++.|++++|++|++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 127 VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 4555544421 1 2458899999999999999999988865443
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=8.9e-20 Score=129.46 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=90.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+++|| |||++++..+|..+++++|++++|||+++..+|.....|+..+... ...+.|+++|+||+|+.+. ..
T Consensus 57 ~~~l~l~D--~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~ 132 (173)
T cd04154 57 GYKLNIWD--VGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LS 132 (173)
T ss_pred CEEEEEEE--CCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CC
Confidence 44667788 9999999999999999999999999999999999988888877543 2256999999999998653 34
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.+++..+.. ..+++++++||++|.|++++|++++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 133 EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 555555543 23567999999999999999999864
No 106
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=6.2e-20 Score=130.06 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=93.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+.+|| |+|++++..++..+++++|++|||||++++.+|+.+..|+..+... .++|+++|+||+|+.+.+.+...+
T Consensus 55 ~l~~~d--~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~ 130 (169)
T cd01892 55 YLILRE--VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQ 130 (169)
T ss_pred EEEEEe--cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccC
Confidence 345565 9999999999999999999999999999999999998888876432 368999999999996554444455
Q ss_pred HHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 86 ~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
...+++.+++. ++++||+++.|++++|+.+++.+.
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 131 PDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 66778888874 799999999999999999988764
No 107
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=2.6e-19 Score=129.89 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=95.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC-CCccC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVS 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~-~~~v~ 82 (163)
..++||| |+|+++|..++..+++++|++|||||+++..+|+.+..|+..+..... .++|+++|+||.|+.. .+.+.
T Consensus 47 ~~l~i~D--~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~ 124 (198)
T cd04147 47 LTLDILD--TSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP 124 (198)
T ss_pred EEEEEEE--CCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc
Confidence 3566777 999999999999999999999999999999999999999998877654 4699999999999865 34455
Q ss_pred HHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.++...... .++.+++++||+++.|++++|+++++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 555554443 45678999999999999999999998765
No 108
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=4.3e-19 Score=126.51 Aligned_cols=116 Identities=35% Similarity=0.511 Sum_probs=101.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.++||| |+|+++|..++..++..+|++++|||+++..+|+.+..|+..+.+... .+.|+++++||+|+...+.+..+
T Consensus 50 ~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~ 127 (180)
T cd04137 50 HLEIVD--TAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE 127 (180)
T ss_pred EEEEEE--CCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHH
Confidence 356676 999999999999999999999999999999999999999888876542 56899999999999766667777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+...++..++.+++++||+++.|+.++|+++.+.+....
T Consensus 128 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 128 EGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 777888888889999999999999999999998876553
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=3e-19 Score=124.34 Aligned_cols=112 Identities=39% Similarity=0.619 Sum_probs=100.9
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..+++|| ++|++++..++..+++++|++++|||+++.+++..+..|+..+..... ...|+++++||+|+.....+..
T Consensus 47 ~~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 124 (160)
T cd00876 47 YTLDILD--TAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSK 124 (160)
T ss_pred EEEEEEE--CCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecH
Confidence 4567777 999999999999999999999999999999999999999999877664 5799999999999977667778
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+++..++..++.+++++|++++.|++++|++|.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 125 EEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 88888998888999999999999999999999875
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=3.7e-19 Score=123.13 Aligned_cols=110 Identities=59% Similarity=0.931 Sum_probs=99.2
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.+|| +||++.+..++..+++++|++++|||+++++++..+..|+..+........|+++++||+|+........+
T Consensus 49 ~~~~l~D--~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 126 (159)
T cd00154 49 VKLQIWD--TAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE 126 (159)
T ss_pred EEEEEEe--cCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH
Confidence 4566777 99999999999999999999999999999999999999999998876567999999999999755667788
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
+...++...+.+++++|++++.|++++|++|.
T Consensus 127 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 127 EAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 88889988899999999999999999999985
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.81 E-value=3.6e-19 Score=124.46 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=86.4
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCCCCc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ilv~nK~D~~~~~~ 80 (163)
+..+++|| |||+++|..+|..+++++|++|||||+++..++..+..|+..+.+.. ..++|+++|+||+|+.+.
T Consensus 44 ~~~~~l~D--t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-- 119 (162)
T cd04157 44 NLSFTAFD--MSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA-- 119 (162)
T ss_pred CEEEEEEE--CCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--
Confidence 34567777 99999999999999999999999999999999988888888776532 246999999999998543
Q ss_pred cCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 81 VSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 81 v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
....+...... .....++++||+++.|++++|++|.+
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 120 LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 22333332221 11235899999999999999999864
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=1.1e-19 Score=128.53 Aligned_cols=110 Identities=22% Similarity=0.274 Sum_probs=87.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+++|| |||++++..+|..|++++|++|||||+++..+|..+..|+..+.+... .++|++||+||.|+.+.. +
T Consensus 42 ~~~~~i~D--~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~ 117 (167)
T cd04161 42 KYEVCIFD--LGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--L 117 (167)
T ss_pred CEEEEEEE--CCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--C
Confidence 45677777 999999999999999999999999999999999999999998876432 468999999999986533 2
Q ss_pred HHHHH------HHHHHcC--CeEEEEcCCCC------CCHHHHHHHHHH
Q 031249 83 KEEGE------QFAKENG--LLFLEASARTA------QNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~------~~~~~~~--~~~~~~Sa~~~------~~i~~lf~~l~~ 117 (163)
..+.. .+++..+ +.++++||++| .|+.+.|+||+.
T Consensus 118 ~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 118 GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 22222 2232223 45788999998 899999999974
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=1.4e-18 Score=122.56 Aligned_cols=113 Identities=27% Similarity=0.328 Sum_probs=89.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--C
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~ 82 (163)
.+++|| |+|.+++...+..+++++|+++||||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.... .
T Consensus 48 ~~~i~D--t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~ 124 (166)
T cd01893 48 PTTIVD--TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGL 124 (166)
T ss_pred EEEEEe--CCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHH
Confidence 455666 9999999888888899999999999999999999985 5778777654 47999999999999664432 1
Q ss_pred HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.++...++..+. ..++++||+++.|++++|+.+++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 125 EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 233334444443 369999999999999999999887753
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=9.6e-19 Score=124.43 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=87.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+++|| |||+++|..+|..+++++|+++||||+++.+++.....++..+.+... ...|+++++||+|+.+ .+.
T Consensus 58 ~~~~~l~D--~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~ 133 (174)
T cd04153 58 NIRFLMWD--IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMT 133 (174)
T ss_pred CeEEEEEE--CCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCC
Confidence 45678888 999999999999999999999999999999999888887777754432 4689999999999854 234
Q ss_pred HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.++..... +..+++++++||+++.||+++|++|.+
T Consensus 134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 44432222 223456899999999999999999864
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=3.3e-19 Score=124.68 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=84.4
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..++||| |||+++|..+|..+++++|++|+|+|++++.++.....++..+.+ ....+.|+++|+||+|+.+.. .
T Consensus 42 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~ 117 (158)
T cd04151 42 NLKFQVWD--LGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--S 117 (158)
T ss_pred CEEEEEEE--CCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--C
Confidence 45678888 999999999999999999999999999999888777666665533 222468999999999985432 2
Q ss_pred HHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
..+...... ..+.+++++||+++.|++++|++|++
T Consensus 118 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 118 EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 333222111 11246999999999999999999974
No 116
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=1.5e-18 Score=122.04 Aligned_cols=111 Identities=30% Similarity=0.392 Sum_probs=90.3
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+++|| |||++.+..++..+++++|+++||+|+++..++.....|+..+.+... .++|+++++||+|+.+ ..
T Consensus 48 ~~~~~~l~D--t~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~ 123 (167)
T cd04160 48 GNARLKFWD--LGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--AL 123 (167)
T ss_pred CCEEEEEEE--CCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CC
Confidence 345677777 999999999999999999999999999999999988888888765432 5689999999999855 34
Q ss_pred CHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 82 SKEEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
..++...+... .+.+++++||+++.|++++|++|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 124 SVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 45555555433 2357999999999999999999864
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1.5e-18 Score=124.70 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=91.9
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
.+.++++|| |||++++..+|..+++++|++++|+|+++..+|.....|+..+.+... .+.|+++++||+|+.. .+
T Consensus 61 ~~~~~~l~D--~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~ 136 (190)
T cd00879 61 GNIKFKTFD--LGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AV 136 (190)
T ss_pred CCEEEEEEE--CCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--Cc
Confidence 355666777 999999999999999999999999999999999888888888765432 4689999999999853 46
Q ss_pred CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 82 ~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+++..++.. ....++++||++++|++++|++|.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 66777666543 12458999999999999999999765
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=3.4e-18 Score=120.50 Aligned_cols=109 Identities=31% Similarity=0.584 Sum_probs=92.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRR----- 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~~----- 79 (163)
.+++|| |+|+++|..++..+++.+|++++|||+++..+|..... |+..+.... ...|+++|+||+|+....
T Consensus 49 ~l~~~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~ 125 (171)
T cd00157 49 NLGLWD--TAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKK 125 (171)
T ss_pred EEEEEe--CCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhh
Confidence 467777 99999999899999999999999999999999988654 777777655 479999999999986543
Q ss_pred ------ccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHH
Q 031249 80 ------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 80 ------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.+..+++..++..++. +++++||+++.|++++|.++++
T Consensus 126 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 126 LEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred cccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 3456778888888887 8999999999999999999875
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.78 E-value=1.9e-18 Score=120.72 Aligned_cols=109 Identities=23% Similarity=0.342 Sum_probs=86.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
..+.+|| |+|++++..+|..+++++|+++||||+++..++..+..|+..+.+... .+.|+++|+||+|+... ...
T Consensus 44 ~~l~i~D--~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 119 (160)
T cd04156 44 LSLTVWD--VGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTA 119 (160)
T ss_pred eEEEEEE--CCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCH
Confidence 3567777 999999999999999999999999999999999998888888755322 46899999999998542 333
Q ss_pred HHHHHHH------HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 84 EEGEQFA------KENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 84 ~~~~~~~------~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
++..... ...+.+++++||+++.||+++|++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 4433222 122346899999999999999999864
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=1.7e-18 Score=120.83 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=89.2
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+.+|| |||++++..++..+++++|++++|||++++.++..+..|+..+.... ..+.|+++++||+|+.... .
T Consensus 42 ~~~~~i~D--~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~ 117 (158)
T cd00878 42 NVSFTVWD--VGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--S 117 (158)
T ss_pred CEEEEEEE--CCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--C
Confidence 35677777 99999999999999999999999999999999999988888876643 2578999999999986532 3
Q ss_pred HHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAKE-----NGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.++....... ...+++++||+++.|++++|++|..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 3444433322 2356999999999999999999875
No 121
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.78 E-value=3.7e-18 Score=124.26 Aligned_cols=99 Identities=20% Similarity=0.361 Sum_probs=82.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-------------------CCCCeE
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSI 66 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ 66 (163)
.++||| |+|+++|..++..+++++|++|+|||+++..||+.+..|+.++.... ...+|+
T Consensus 55 ~l~IwD--taG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 132 (202)
T cd04102 55 FVELWD--VGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPL 132 (202)
T ss_pred EEEEEe--cCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceE
Confidence 466776 99999999999999999999999999999999999999999997642 236899
Q ss_pred EEEeeCCCCCCCCccCHHH----HHHHHHHcCCeEEEEcCCCCC
Q 031249 67 MLVGNKCDLAHRRAVSKEE----GEQFAKENGLLFLEASARTAQ 106 (163)
Q Consensus 67 ilv~nK~D~~~~~~v~~~~----~~~~~~~~~~~~~~~Sa~~~~ 106 (163)
+|||||.|+.+++.+..+. ...++++.+++.++.++.+..
T Consensus 133 ilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 133 LVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred EEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 9999999997665555443 446788899998888887653
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=6e-18 Score=121.48 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=89.0
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+.+|| |||++++..+|..+++++|++|||+|++++.++.....++..+.+.. ..++|+++|+||+|++. .++
T Consensus 60 ~~~~~~~D--~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~ 135 (184)
T smart00178 60 NIKFTTFD--LGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AAS 135 (184)
T ss_pred CEEEEEEE--CCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCC
Confidence 45566777 99999999999999999999999999999999988888887775432 24689999999999853 456
Q ss_pred HHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 83 KEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 83 ~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.+++...... ....+++|||+++.|++++++||..+
T Consensus 136 ~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 136 EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 6665544321 12248999999999999999999765
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.77 E-value=1.3e-17 Score=118.98 Aligned_cols=113 Identities=27% Similarity=0.423 Sum_probs=92.9
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+.+|| .+|++.++.+|+.|++++|++|||+|+++.+.+......+..+..... .++|+++++||+|+++ ..
T Consensus 56 ~~~~~~~~d--~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~ 131 (175)
T PF00025_consen 56 KGYSLTIWD--LGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AM 131 (175)
T ss_dssp TTEEEEEEE--ESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SS
T ss_pred CcEEEEEEe--ccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cc
Confidence 466788888 699999999999999999999999999999888888887777755432 5799999999999854 45
Q ss_pred CHHHHHHHHHHc------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKEN------GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 82 ~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..+++....... .+.++.|||.+|+|+.+.|+||.+++
T Consensus 132 ~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 132 SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 666666544322 33489999999999999999999875
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.75 E-value=1.9e-17 Score=117.74 Aligned_cols=106 Identities=24% Similarity=0.245 Sum_probs=82.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|..++..+++++|++|+|||+++..++.....|.... . .++|+++|+||+|+.+.. ....
T Consensus 68 ~~~l~D--t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~ 139 (179)
T cd01890 68 LLNLID--TPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERV 139 (179)
T ss_pred EEEEEE--CCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHH
Confidence 455666 9999999999999999999999999999877666665554332 2 358999999999985421 2233
Q ss_pred HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...+++.++++ ++++||++|.|++++|++|.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 KQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 34566666664 89999999999999999998754
No 125
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.75 E-value=6.9e-17 Score=118.54 Aligned_cols=111 Identities=30% Similarity=0.569 Sum_probs=94.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.+++|| |+|+++|..++..++++++++++|||+++..+|..+..|+..+.... .+.|+++++||+|+.+ +.+..+.
T Consensus 59 ~i~~~D--t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~~ 134 (215)
T PTZ00132 59 CFNVWD--TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKARQ 134 (215)
T ss_pred EEEEEE--CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHHH
Confidence 445555 99999999999999999999999999999999999999999997664 5689999999999854 3343333
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..++...++.++++|++++.|++++|.+|.+.+..
T Consensus 135 -~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 135 -ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred -HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 45677788899999999999999999999988764
No 126
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.5e-16 Score=111.59 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=96.3
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~ 80 (163)
|.+..+.+|| .+|+++++++|+.|+++.+++|||+|.+|.+-+..+...+..+..... ...|+++.+||.|++. .
T Consensus 58 ykn~~f~vWD--vGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--a 133 (181)
T KOG0070|consen 58 YKNISFTVWD--VGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--A 133 (181)
T ss_pred EcceEEEEEe--cCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--c
Confidence 4467888999 799999999999999999999999999999999888887777766554 5799999999999954 4
Q ss_pred cCHHHHHHHHHHcCC-----eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 81 v~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.+..++........+ .+..++|.+|+|+.+.++++...+..
T Consensus 134 ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 134 LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 566666555444433 38889999999999999999887754
No 127
>PLN00023 GTP-binding protein; Provisional
Probab=99.71 E-value=1e-16 Score=123.08 Aligned_cols=88 Identities=22% Similarity=0.500 Sum_probs=76.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCeEEEEeeCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKC 73 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ilv~nK~ 73 (163)
.++||| |+|+++|..++..|++++|++|+|||+++..+|+.+..|++.+..... .++|++|||||+
T Consensus 84 ~LqIWD--TAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 84 FVELWD--VSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred EEEEEE--CCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 467777 999999999999999999999999999999999999999999987531 248999999999
Q ss_pred CCCCCC---c---cCHHHHHHHHHHcCC
Q 031249 74 DLAHRR---A---VSKEEGEQFAKENGL 95 (163)
Q Consensus 74 D~~~~~---~---v~~~~~~~~~~~~~~ 95 (163)
|+.+.+ . +..++++++++..++
T Consensus 162 DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 162 DIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccccccHHHHHHHHHHcCC
Confidence 996542 2 357899999999884
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.70 E-value=4.8e-16 Score=106.95 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=96.0
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~ 80 (163)
+.+..+++|| .+||..+++.|+.||..+||+|+|+|..|...++.....+..+.... -.+.|++|++||.|++. .
T Consensus 57 ~~~~~L~iwD--vGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~ 132 (185)
T KOG0073|consen 57 YKGYTLNIWD--VGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--A 132 (185)
T ss_pred ecceEEEEEE--cCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--c
Confidence 5567888888 79999999999999999999999999999999988877776664422 25689999999999963 3
Q ss_pred cCHHHH------HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 81 VSKEEG------EQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 81 v~~~~~------~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+..+++ ..+++....+++.||+.+|+++.+.|.||...+.++
T Consensus 133 l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 133 LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 444443 344455667899999999999999999999988874
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=2.3e-16 Score=109.16 Aligned_cols=110 Identities=21% Similarity=0.290 Sum_probs=85.4
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+.+|| |+|++++..++..+++++|++++|+|+++..++.....|+..+.... ..++|+++|+||.|+.+.. .
T Consensus 43 ~~~~~~~D--~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~ 118 (159)
T cd04159 43 NVTLKVWD--LGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--S 118 (159)
T ss_pred CEEEEEEE--CCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--C
Confidence 44567777 99999999999999999999999999999999988877777765432 2468999999999986532 2
Q ss_pred HHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFA-----KENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
..+..... .....+++++|++++.|++++|++|.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 119 VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 22222111 112356899999999999999999865
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=2.8e-16 Score=110.69 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=83.7
Q ss_pred eeeEeeecccchh----hhhhchhhhc---cCCcEEEEEEECCCh-HHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCC
Q 031249 6 ESFFWSLLQAGQE----SFRSITRSYY---RGAAGALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDL 75 (163)
Q Consensus 6 ~~~l~d~Dt~G~e----~~~~~~~~~~---~~ad~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~ 75 (163)
.+.||| |||.. .+..++..++ +.+|++++|+|+++. ++++.+..|++.+..... ...|+++|+||+|+
T Consensus 49 ~~~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 49 SFVVAD--IPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred eEEEEe--cCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 778888 99963 3333444444 459999999999998 789998889988876542 35899999999998
Q ss_pred CCCCccCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.+...+ .+....+... .+.+++++||+++.|++++|+++.+.
T Consensus 127 ~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 127 LDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 664433 3344445555 36789999999999999999998764
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.69 E-value=4.3e-16 Score=110.18 Aligned_cols=108 Identities=20% Similarity=0.280 Sum_probs=84.9
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+.+|| |+|++++..+|..+++++|++++|+|+++..++.....++..+.+.. ...+|+++++||.|+.+..
T Consensus 56 ~~~~~~~~D--~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-- 131 (173)
T cd04155 56 DGFKLNVWD--IGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-- 131 (173)
T ss_pred CCEEEEEEE--CCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--
Confidence 355677887 99999999999999999999999999999999988877777765432 2468999999999985422
Q ss_pred CHHHHHHHHHHcCC--------eEEEEcCCCCCCHHHHHHHHHH
Q 031249 82 SKEEGEQFAKENGL--------LFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 82 ~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
..++. ....++ +++++||++++|++++|++|.+
T Consensus 132 ~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 PAEEI---AEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CHHHH---HHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 22332 233332 3789999999999999999975
No 132
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.69 E-value=9e-17 Score=108.78 Aligned_cols=114 Identities=21% Similarity=0.298 Sum_probs=88.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+.+.+|| .+|+++|+++|+.|++.+++++||+|+.|++........+..+..... .++|+++.|||.|++. .+.
T Consensus 64 nvtiklwD--~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~ 139 (186)
T KOG0075|consen 64 NVTIKLWD--LGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALS 139 (186)
T ss_pred ceEEEEEe--cCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--ccc
Confidence 45677888 799999999999999999999999999999888877777776654432 5799999999999855 233
Q ss_pred HHHHHH-----HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 KEEGEQ-----FAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
...... -.....+.+|.+|++...|++.+..||+++...
T Consensus 140 ~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 140 KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 322211 112223458999999999999999999887643
No 133
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.68 E-value=5.8e-17 Score=113.72 Aligned_cols=134 Identities=33% Similarity=0.534 Sum_probs=109.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCCCCc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ilv~nK~D~~~~~~ 80 (163)
++++||| .+||++|..|...|++.+++.++|||++...+|+....|.+.+-.... .+.|+++.+||+|......
T Consensus 75 vRlqLwd--IagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~ 152 (229)
T KOG4423|consen 75 VRLQLWD--IAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK 152 (229)
T ss_pred HHHHHhc--chhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh
Confidence 4678999 799999999999999999999999999999999999999999844332 4689999999999854221
Q ss_pred c-CHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCCCceec
Q 031249 81 V-SKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVG 140 (163)
Q Consensus 81 v-~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (163)
. .......+.+++|+. .+++|++.+.++.+.-+.+++.++.+-.+...+.......+++.
T Consensus 153 ~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~ 214 (229)
T KOG4423|consen 153 NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLR 214 (229)
T ss_pred hhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCCcccccccccccCcc
Confidence 1 135667788899987 99999999999999999999999988766665555555544443
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=9.7e-16 Score=119.28 Aligned_cols=116 Identities=13% Similarity=0.034 Sum_probs=89.1
Q ss_pred cceeeEeeecccchhh----hhhch---hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCC
Q 031249 4 SQESFFWSLLQAGQES----FRSIT---RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCD 74 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~----~~~~~---~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D 74 (163)
+..+.||| |||.-+ ...+. ..+++.++++|+|+|+++.++++++..|++++..+.. .++|+++|+||+|
T Consensus 205 ~~~~~i~D--~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 205 YKSFVIAD--IPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred CcEEEEEe--CCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 34688888 899632 12233 3356679999999999988789999999999977643 3689999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+...+..+....++...+.+++++||+++.||+++|++|.+.+.+
T Consensus 283 L~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 283 LLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 86544444344555556667889999999999999999999887654
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=5.3e-16 Score=109.13 Aligned_cols=111 Identities=20% Similarity=0.150 Sum_probs=79.0
Q ss_pred cceeeEeeecccchhhhh---------hchhhhccCCcEEEEEEECCChHHH--HHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 4 SQESFFWSLLQAGQESFR---------SITRSYYRGAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~---------~~~~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
+.+++||| |||+.... .........+|++|+|+|+++..++ .....|+..+.... .+.|+++|+||
T Consensus 46 ~~~~~i~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK 122 (168)
T cd01897 46 YLRWQVID--TPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNK 122 (168)
T ss_pred ceEEEEEE--CCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEc
Confidence 45778888 99974211 0111112346899999999987654 55566888776543 46899999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 73 ~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.|+.+...+. +...+....+.+++++||+++.|++++|+++.+.+
T Consensus 123 ~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 123 IDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 9986543332 24455555567899999999999999999998765
No 136
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-15 Score=104.05 Aligned_cols=120 Identities=22% Similarity=0.343 Sum_probs=102.6
Q ss_pred eeeEeeecccchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCH
Q 031249 6 ESFFWSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
.+.|+| |+|...+ ..+-+.|+.-+|+|++||+..|++||+.+..+-+.|-+..+ ..+|+++++||+|+.+++++..
T Consensus 61 ~l~lyD--TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~ 138 (198)
T KOG3883|consen 61 QLRLYD--TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDM 138 (198)
T ss_pred eEEEee--cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCH
Confidence 456666 9998777 56778899999999999999999999988776666655444 4599999999999999899999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 84 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+-+..|++.-.+..+++++.+...+-+.|..+...+..-+.+..
T Consensus 139 d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~ 182 (198)
T KOG3883|consen 139 DVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKST 182 (198)
T ss_pred HHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCccccc
Confidence 99999999999999999999999999999999887766554443
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.65 E-value=2.7e-15 Score=104.77 Aligned_cols=106 Identities=22% Similarity=0.118 Sum_probs=75.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
+..+++|| |||+++|......+++++|++++|+|+++ .++++.+ ..+... ...|+++++||+|+.+...
T Consensus 50 ~~~~~~~D--tpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~ 121 (164)
T cd04171 50 GKRLGFID--VPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDW 121 (164)
T ss_pred CcEEEEEE--CCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHH
Confidence 45678888 99999998877788999999999999987 3333332 222222 1248999999999865321
Q ss_pred --cCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 81 --VSKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 81 --v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
...++....... .+.+++++||+++.|++++|+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 122 LELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 112334444444 3567999999999999999998753
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.63 E-value=1.8e-15 Score=103.79 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=74.9
Q ss_pred eEeeecccch-----hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 8 FFWSLLQAGQ-----ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 8 ~l~d~Dt~G~-----e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+|| |||+ +.|..+.. .++++|++|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ +...
T Consensus 38 ~~iD--t~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~ 106 (142)
T TIGR02528 38 GAID--TPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVD 106 (142)
T ss_pred eeec--CchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccC
Confidence 4565 9997 34554544 5899999999999999998765 2343321 249999999999865 3445
Q ss_pred HHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHH
Q 031249 83 KEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
.+++..+++..+. +++++||+++.|++++|+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 107 IERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 6777778877776 699999999999999999874
No 139
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.62 E-value=8.1e-15 Score=101.83 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=80.0
Q ss_pred cceeeEeeecccchhhhhh------chhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRS------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~------~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+.||| |||++.+.. ++..++. .+|++|+|+|+++..... .++..+.+ .++|+++++||+|+
T Consensus 42 ~~~~~liD--tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl 113 (158)
T cd01879 42 GKEIEIVD--LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDE 113 (158)
T ss_pred CeEEEEEE--CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhh
Confidence 45667777 999988765 3566665 999999999998764432 34444443 35899999999999
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.....+.. ....+....+.+++++||.++.|+.++|+++...
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 114 AEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred cccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 66444433 3456777778899999999999999999998775
No 140
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.62 E-value=2e-14 Score=105.33 Aligned_cols=120 Identities=38% Similarity=0.537 Sum_probs=92.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC-----
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR----- 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~----- 79 (163)
.+++|| |+|+++|..++..|+.+++++++|||.++ ..+++....|++.+........|+++++||+|+....
T Consensus 55 ~~~~~D--t~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (219)
T COG1100 55 KLQLWD--TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE 132 (219)
T ss_pred EEEeec--CCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence 356666 99999999999999999999999999999 5556667789999988765569999999999997653
Q ss_pred -------ccCHHHHHHHHHHc---CCeEEEEcCC--CCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 80 -------AVSKEEGEQFAKEN---GLLFLEASAR--TAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 80 -------~v~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
.............. ...++++|++ .+.+|.++|..++..+.+......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 22222222222222 3338999999 999999999999999987654443
No 141
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.61 E-value=4.8e-15 Score=101.38 Aligned_cols=114 Identities=25% Similarity=0.420 Sum_probs=94.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-----Cc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----RA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-----~~ 80 (163)
.+.||| .+|+++|..+++...+++-+++|+||.+.+.++..+..|+.+.+..+...+| |+||||.|+--+ ++
T Consensus 70 sfSIwd--lgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~ 146 (205)
T KOG1673|consen 70 SFSIWD--LGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQE 146 (205)
T ss_pred EEEEEe--cCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHH
Confidence 455666 7999999999999999999999999999999999999999999887766667 778999996321 11
Q ss_pred cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
....+++.+++..+.+.++||+....||..+|.-++..+...
T Consensus 147 ~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 147 TISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 112346677888889999999999999999999998887654
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=5.7e-15 Score=107.39 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=79.2
Q ss_pred eeeEeeecccchh---------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e---------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+.||| |||.. .|...+ ..+.++|++++|+|+++..++.....|.+.+......+.|+++|+||+|+.
T Consensus 90 ~~~i~D--t~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 90 EVLLTD--TVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred eEEEeC--CCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 677777 99972 233222 246789999999999998888887777777766544568999999999986
Q ss_pred CCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 77 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 77 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+.... .........+++++||+++.|++++|++|...
T Consensus 167 ~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 167 DDEEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 53221 13344456679999999999999999999765
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.60 E-value=3.2e-14 Score=96.77 Aligned_cols=111 Identities=50% Similarity=0.792 Sum_probs=85.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+.+|| ++|+..+...+..+++.+|++++|+|+++..++..+..|+ ..+.......+|+++++||+|+.......
T Consensus 44 ~~~~~l~D--~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 44 KVKLQIWD--TAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred EEEEEEEe--cCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 34566666 9999999988899999999999999999999998887773 22233333679999999999986543322
Q ss_pred HHH-HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249 83 KEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
... ..........+++++|+.++.|+++++++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 222 3344555678899999999999999999985
No 144
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.3e-15 Score=103.25 Aligned_cols=116 Identities=28% Similarity=0.377 Sum_probs=93.0
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCcc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~v 81 (163)
...++.+|| .+||+..+++|..||..+|++|+++|+++++-|+.....++.+.... -.+.|+++.+||.|+.+. .
T Consensus 67 ~~~~l~fwd--lgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~ 142 (197)
T KOG0076|consen 67 CNAPLSFWD--LGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--M 142 (197)
T ss_pred ccceeEEEE--cCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--h
Confidence 356889999 69999999999999999999999999999999988777777664433 368999999999998653 2
Q ss_pred CHHHHHHH---HHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 82 SKEEGEQF---AKE---NGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 82 ~~~~~~~~---~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
...++... +.. ...++.+|||.+|+||.+...|+++.+.++
T Consensus 143 ~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 143 EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 33333322 222 235699999999999999999999988766
No 145
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.6e-14 Score=97.23 Aligned_cols=114 Identities=19% Similarity=0.321 Sum_probs=91.2
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCCCCc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ilv~nK~D~~~~~~ 80 (163)
|.++.|.+|| .+|+++.+++|+.||.+..++|||.|..+.+..+++...+..+... .....|+++.+||.|++. .
T Consensus 58 ykN~kfNvwd--vGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A 133 (180)
T KOG0071|consen 58 YKNVKFNVWD--VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--A 133 (180)
T ss_pred eeeeEEeeee--ccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--c
Confidence 5677888999 7999999999999999999999999999988888777655555333 335789999999999965 4
Q ss_pred cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 81 v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..++++..+..--. ..+.+++|.++++..+.|.||...+
T Consensus 134 ~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 134 MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 56677766554322 2388999999999999999997643
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.59 E-value=1.1e-14 Score=105.29 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=71.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc-cC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~-v~ 82 (163)
+..++||| |||+++|..++..+++++|++++|||+++.. +.....++..+.. .++|+++++||+|+.+... ..
T Consensus 64 ~~~~~l~D--tpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~ 137 (194)
T cd01891 64 DTKINIVD--TPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEV 137 (194)
T ss_pred CEEEEEEE--CCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHH
Confidence 34567777 9999999999999999999999999998742 2333344444433 3589999999999864321 11
Q ss_pred HHHHHHHHHH-------cCCeEEEEcCCCCCCHHH
Q 031249 83 KEEGEQFAKE-------NGLLFLEASARTAQNVEE 110 (163)
Q Consensus 83 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~ 110 (163)
.+++..+... .+++++++||++|.|+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 138 VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred HHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 2344444422 367799999999987743
No 147
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.58 E-value=1.3e-14 Score=102.50 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=81.9
Q ss_pred cceeeEeeecccchhh----hhhch---hhhccCCcEEEEEEECCCh------HHHHHHHHHHHHHHHhcC-------CC
Q 031249 4 SQESFFWSLLQAGQES----FRSIT---RSYYRGAAGALLVYDITRR------ETFNHLSSWLEDARQHAN-------PN 63 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~----~~~~~---~~~~~~ad~~i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~ 63 (163)
+.++.||| |||... ...++ ..+++++|++++|+|+++. .++..+..|...+..... ..
T Consensus 43 ~~~~~i~D--tpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T cd01881 43 GARIQVAD--IPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CCeEEEEe--ccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 56777888 999632 23333 3357889999999999988 578877777777754432 35
Q ss_pred CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.|+++|+||+|+..................+.+++++||+++.|++++++++...
T Consensus 121 ~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 121 KPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 8999999999986544333322233444456679999999999999999998654
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=3.3e-14 Score=99.78 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS- 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~- 82 (163)
+..+.+|| |||++.|..++..+++.+|++++|+|+++..... ....+..+.. .++|+++|+||+|+.+.....
T Consensus 49 ~~~~~iiD--tpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~ 122 (168)
T cd01887 49 IPGITFID--TPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERV 122 (168)
T ss_pred cceEEEEe--CCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHH
Confidence 45677777 9999999999999999999999999998742111 1112222332 358999999999986421100
Q ss_pred HHHHHHHHH----H--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK----E--NGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~----~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
......+.. . ...+++++|++++.|++++|++|.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 123 KNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 011111111 1 125699999999999999999998764
No 149
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5.7e-14 Score=98.62 Aligned_cols=106 Identities=23% Similarity=0.257 Sum_probs=88.5
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 87 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~ 87 (163)
.+|-+|||||+||..||..+.++++++|+++|.+....+ .....+..+.... ..|++|++||.|+.+ ..+++++.
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~ 143 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIR 143 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHH
Confidence 344445999999999999999999999999999999988 5566777776554 289999999999965 45778887
Q ss_pred HHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 88 QFAKEN--GLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 88 ~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
++.+.. ..++++.+|..+++..+.+..++..
T Consensus 144 e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 144 EALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 777655 7889999999999999998888765
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.57 E-value=3.5e-14 Score=110.45 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=83.4
Q ss_pred ceeeEeeecccchhhh----hhchhhh---ccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEeeC
Q 031249 5 QESFFWSLLQAGQESF----RSITRSY---YRGAAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNK 72 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~----~~~~~~~---~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK 72 (163)
..++||| |||.... ..+...+ ++.+|++++|+|+++. ++++++..|.+++..+.. ..+|++||+||
T Consensus 205 ~~~~i~D--~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK 282 (329)
T TIGR02729 205 RSFVIAD--IPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK 282 (329)
T ss_pred eEEEEEe--CCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence 4677777 8997422 2233344 4579999999999986 678888888888866542 46899999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 73 CDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 73 ~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+|+.+... ..+....+.+..+.+++++||+++.||+++++++.+.+
T Consensus 283 ~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 283 IDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 99865422 23344456666678899999999999999999997653
No 151
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.57 E-value=1.4e-14 Score=108.45 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=79.8
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
|+|..+.+.+++++|++++|||++++. +|..+..|+..+.. .++|++||+||+|+.+++.+..+.+..+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 889999999999999999999999877 89999999987654 3589999999999965444433444444 357889
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q 031249 97 FLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988753
No 152
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.55 E-value=4.1e-14 Score=99.27 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=74.8
Q ss_pred Eeeecccch-----hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 9 FWSLLQAGQ-----ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 9 l~d~Dt~G~-----e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+|| |||. +.+..++ ..++.+|++++|+|+++..++.. .|+..+ ..+.|+++++||.|+.+ ...
T Consensus 41 ~iD--tpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~ 108 (158)
T PRK15467 41 DID--TPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADV 108 (158)
T ss_pred ccc--CCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccH
Confidence 455 9996 3333333 34789999999999998876633 343333 13579999999999854 345
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 84 EEGEQFAKENGL--LFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+....++...++ +++++||++++|++++|+.+.+.+.+.
T Consensus 109 ~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 109 AATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 667777777775 799999999999999999986655443
No 153
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.55 E-value=6.9e-14 Score=96.16 Aligned_cols=109 Identities=33% Similarity=0.467 Sum_probs=84.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh-HHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
..+.+|| |+|++++..++..+.++++++++++|.... .++.... .|...+......+.|+++++||.|+.... ..
T Consensus 50 ~~~~~~D--~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~ 126 (161)
T TIGR00231 50 YKFNLLD--TAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LK 126 (161)
T ss_pred EEEEEEE--CCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hh
Confidence 3455666 999999999999999999999999999877 6776665 66666665553378999999999986533 33
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
......+......+++++||+++.|+.++|++|-
T Consensus 127 ~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 127 THVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 3333344444456799999999999999999863
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.55 E-value=5.2e-14 Score=116.99 Aligned_cols=106 Identities=21% Similarity=0.214 Sum_probs=81.8
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
.++||| |||+++|...+..+++.+|++|+|+|+++..++.....|...+. .+.|+++|+||+|+.... ....
T Consensus 71 ~l~liD--TPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~ 142 (595)
T TIGR01393 71 VLNLID--TPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERV 142 (595)
T ss_pred EEEEEE--CCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHH
Confidence 456666 99999999999999999999999999998766666555554432 247999999999985421 2223
Q ss_pred HHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH
Q 031249 86 GEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 86 ~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..++.+.+++. ++++||+++.|++++|+++.+.+
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 34555556653 89999999999999999998765
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.54 E-value=9.1e-15 Score=106.06 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=73.3
Q ss_pred eeeEeeecccc-----------hhhhhhchhhhcc----CCcEEEEEEECCChHHHH----------HHHHHHHHHHHhc
Q 031249 6 ESFFWSLLQAG-----------QESFRSITRSYYR----GAAGALLVYDITRRETFN----------HLSSWLEDARQHA 60 (163)
Q Consensus 6 ~~~l~d~Dt~G-----------~e~~~~~~~~~~~----~ad~~i~v~d~~~~~s~~----------~~~~~~~~l~~~~ 60 (163)
.+++|| ||| ++++..++..+++ .++++++|+|.++...+. ....++..+..
T Consensus 53 ~~~l~D--t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 128 (201)
T PRK04213 53 DFILTD--LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-- 128 (201)
T ss_pred ceEEEe--CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--
Confidence 577888 999 7888888888765 357888888876532210 00112222222
Q ss_pred CCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 61 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---------LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 61 ~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.++|+++|+||+|+.+.. .+....+.+..++ +++++||+++ |++++|++|.+.+.
T Consensus 129 -~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 129 -LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred -cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 358999999999985432 3445556666654 4899999999 99999999988754
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.54 E-value=5.8e-14 Score=102.33 Aligned_cols=107 Identities=23% Similarity=0.221 Sum_probs=74.3
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
..+.||| |||+++|...+...+..+|++++|+|++++ ++++.+ ..+... ...|+++++||+|+.+...
T Consensus 83 ~~i~~iD--tPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~--~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 83 RHVSFVD--CPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM--GLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cEEEEEE--CCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc--CCCcEEEEEEchhccCHHH
Confidence 3566666 999999988888888899999999999873 233322 222222 1247999999999864221
Q ss_pred c--CHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 81 V--SKEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 81 v--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
. ..+++..++..+ +.+++++||+++.|++++|+.+.+.+
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1 112333344332 56799999999999999999987643
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=4.4e-14 Score=114.88 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=81.8
Q ss_pred ccceeeEeeecccch----------hhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQ----------ESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~----------e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
++..+.||| |||. +.|..+. ..+++++|++|+|||+++..++.++. ++..+.. .++|+++|+|
T Consensus 257 ~~~~~~l~D--TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~N 330 (472)
T PRK03003 257 GGKTWRFVD--TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFN 330 (472)
T ss_pred CCEEEEEEE--CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence 466788888 9994 5555544 34689999999999999988887763 4444443 3589999999
Q ss_pred CCCCCCCCcc--CHHHHHH-HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 72 KCDLAHRRAV--SKEEGEQ-FAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 72 K~D~~~~~~v--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
|+|+.+.... ...+... +......+++++||++|.||+++|+.+.+.+......
T Consensus 331 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 331 KWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred CcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999642111 0111211 2222346799999999999999999998877544433
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.53 E-value=1.7e-13 Score=107.50 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=77.9
Q ss_pred ccceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 3 FSQESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
++.++.||| |+|. +.|...+ ..+++||++++|+|++++.++..+..|...+......+.|+++|+||+
T Consensus 235 ~~~~i~l~D--T~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~ 311 (351)
T TIGR03156 235 DGGEVLLTD--TVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKI 311 (351)
T ss_pred CCceEEEEe--cCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEee
Confidence 356777777 9997 3444433 358899999999999998888877666666655443468999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
|+..... ..... ....+++++||+++.|++++++.|.+.
T Consensus 312 Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 312 DLLDEPR-----IERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCChHh-----HHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 9854221 11111 223468999999999999999998754
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.52 E-value=1e-13 Score=96.01 Aligned_cols=104 Identities=16% Similarity=0.052 Sum_probs=72.5
Q ss_pred cceeeEeeecccchhhhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+.+|| |||...+.. .+..+++.+|++++|+|..+..+.... .+...+... +.|+++|+||+|+
T Consensus 44 ~~~~~i~D--tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~ 117 (157)
T cd01894 44 GREFILID--TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDN 117 (157)
T ss_pred CeEEEEEE--CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECccc
Confidence 34455666 999877543 344578899999999999875444332 233333332 4899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.+.... .......+. +++++|++++.|++++|+++++.
T Consensus 118 ~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 118 IKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred CChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 653221 223334565 68999999999999999999865
No 160
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-13 Score=93.66 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=87.8
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHH-HHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
|.+.++++|| .+|+-..+++|+.||.+.|++|||+|.+|.+........+-.+ .+..-....++|++||.|.+. .
T Consensus 59 yKNLk~~vwd--LggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~ 134 (182)
T KOG0072|consen 59 YKNLKFQVWD--LGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--A 134 (182)
T ss_pred cccccceeeE--ccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--h
Confidence 3467899999 5999999999999999999999999999988776655544444 333224578899999999743 2
Q ss_pred cCHHHHHHH-----HHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 81 VSKEEGEQF-----AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 81 v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
....++... .+..-..+++.||.++.|+++.++||.+.+.++
T Consensus 135 ~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 135 LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 333333222 222235699999999999999999999887653
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.50 E-value=1.6e-13 Score=110.55 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=82.9
Q ss_pred ccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++.++.+|| |||++++... ...+++++|++++|||++++.+++.. |+..+.. .++|+++|+||+|
T Consensus 249 ~g~~v~l~D--TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~D 321 (442)
T TIGR00450 249 NGILIKLLD--TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKID 321 (442)
T ss_pred CCEEEEEee--CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECcc
Confidence 466778888 9998655432 24578999999999999998887765 6666543 3589999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
+.+. +...+++..+.+++++||++ .||+++|+.|.+.+.+...
T Consensus 322 l~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 322 LKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred CCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 8542 12345566778899999998 6999999999998877653
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.50 E-value=2.8e-13 Score=96.62 Aligned_cols=109 Identities=22% Similarity=0.187 Sum_probs=79.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-- 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-- 82 (163)
..+.||| |||+.++...+..+++.+|++++|+|+.+..+... ..++..+.. .+.|+++++||+|+..+....
T Consensus 62 ~~~~liD--tpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~ 135 (189)
T cd00881 62 RRVNFID--TPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEV 135 (189)
T ss_pred EEEEEEe--CCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHH
Confidence 3456666 99999999999999999999999999987654433 234444443 358999999999986522211
Q ss_pred HHHHHHHHHH--------------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKE--------------NGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+++...... ...+++++||+++.|++++|.++...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 136 LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2233333332 245699999999999999999998764
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=8.7e-13 Score=105.48 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=85.6
Q ss_pred cceeeEeeecccchhh----hhhchhhh---ccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEee
Q 031249 4 SQESFFWSLLQAGQES----FRSITRSY---YRGAAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGN 71 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~----~~~~~~~~---~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ilv~n 71 (163)
+..+.||| |||... ...+...| ++.++++|+|+|+++. ++++++..|.+++..+.. ..+|++||+|
T Consensus 205 ~~~~~laD--~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 205 GRSFVMAD--IPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred CceEEEEE--CCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 45678888 899632 22344444 4569999999999864 677888888888877643 3689999999
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+|+.. ..+....+.+..+.+++++||+++.|+++++++|.+.+...
T Consensus 283 K~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 283 KMDLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999843 23455666666677899999999999999999998876554
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=2.7e-13 Score=110.30 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=77.2
Q ss_pred ccceeeEeeecccchh--------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQE--------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e--------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++..+.||| |||.+ .+...+..+++.+|++|||||+++..++.+ ..+...+.. .++|+++|+||+|
T Consensus 84 ~~~~~~l~D--T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~D 157 (472)
T PRK03003 84 NGRRFTVVD--TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVD 157 (472)
T ss_pred CCcEEEEEe--CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcc
Confidence 355677887 99975 344556778999999999999998766543 334444443 3589999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+... ..+....+ ..++ .++++||++|.|++++|++++..+.+
T Consensus 158 l~~~---~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 158 DERG---EADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcc---chhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 8532 11222222 2343 35799999999999999999988754
No 165
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.48 E-value=4e-13 Score=108.02 Aligned_cols=114 Identities=19% Similarity=0.119 Sum_probs=78.2
Q ss_pred ccceeeEeeecccchhhhhhc----------h-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSI----------T-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~----------~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
++..+.||| |||..++..+ . ..+++.+|++|+|+|+++..+..+. .++..+.+ .++|+++|+|
T Consensus 218 ~~~~~~liD--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~N 291 (429)
T TIGR03594 218 NGKKYLLID--TAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVN 291 (429)
T ss_pred CCcEEEEEE--CCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEE
Confidence 355678888 9997554332 1 2468899999999999988776654 33444433 3589999999
Q ss_pred CCCCCCCCccCHHHHHH-HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSKEEGEQ-FAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
|+|+.++ ....++... +... ...+++++||++|.|++++|+++...+....
T Consensus 292 K~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 292 KWDLVKD-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CcccCCC-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999631 111222222 2222 2467999999999999999999988765543
No 166
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.48 E-value=3.9e-13 Score=111.43 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=75.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+.||| |||+++|..++...++.+|++|+|+|+++. ++++. +..+.. .++|+++++||+|+.+ ..
T Consensus 136 ~i~~iD--TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~----i~~~~~---~~vPiIVviNKiDl~~---~~ 203 (587)
T TIGR00487 136 MITFLD--TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA----ISHAKA---ANVPIIVAINKIDKPE---AN 203 (587)
T ss_pred EEEEEE--CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH----HHHHHH---cCCCEEEEEECccccc---CC
Confidence 677777 999999999999999999999999999873 33332 222222 3589999999999854 23
Q ss_pred HHHHHHHHHHcC---------CeEEEEcCCCCCCHHHHHHHHHH
Q 031249 83 KEEGEQFAKENG---------LLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 83 ~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.+++...+...+ .+++++||++|.|+.++|+++..
T Consensus 204 ~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 204 PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 344444433332 46999999999999999999864
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.47 E-value=2.2e-13 Score=110.10 Aligned_cols=103 Identities=21% Similarity=0.146 Sum_probs=77.8
Q ss_pred ccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++.++.||| |||.+.+... ...+++++|++++|||++++.++++...|.. ..+.|+++|+||+|
T Consensus 261 ~g~~i~l~D--T~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~D 332 (449)
T PRK05291 261 DGIPLRLID--TAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKAD 332 (449)
T ss_pred CCeEEEEEe--CCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhh
Confidence 466788888 9998765432 2347889999999999999877775433332 24589999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+..... ...+.+++++||+++.|++++++++.+.+..
T Consensus 333 L~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 333 LTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 86532221 3345679999999999999999999888754
No 168
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.46 E-value=6.5e-13 Score=110.59 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=80.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..++||| |||+++|...+..+++.+|++|+|+|+++.........|.... . .+.|+++|+||+|+.... ...
T Consensus 74 ~~lnLiD--TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~--~~~ 145 (600)
T PRK05433 74 YILNLID--TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAAD--PER 145 (600)
T ss_pred EEEEEEE--CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCccc--HHH
Confidence 3456666 9999999999999999999999999999865554444443322 2 358999999999985421 122
Q ss_pred HHHHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLL---FLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
....+....++. ++++||+++.|+.+++++|...+.
T Consensus 146 v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 146 VKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 233444555654 899999999999999999987654
No 169
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.45 E-value=1.2e-12 Score=99.42 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=73.8
Q ss_pred eeeEeeecccchhhhh--------hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 6 ESFFWSLLQAGQESFR--------SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~--------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
.+.||| |||..... .....+++++|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+
T Consensus 49 qii~vD--TPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 49 QIIFID--TPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF 121 (270)
T ss_pred EEEEEE--CcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC
Confidence 455565 99964321 12345788999999999999876654 334444443 3589999999999864
Q ss_pred CCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 78 RRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 78 ~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
... .......+....++ +++++||++|.|++++++++.+.+
T Consensus 122 ~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 122 KDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred HHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 222 22334445444454 699999999999999999987764
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.44 E-value=8.3e-13 Score=112.23 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=75.8
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
+..+.||| |||++.|..++...++.+|++|||||+++ +++++.+ ..+. ..++|+||++||+|+++.
T Consensus 336 ~~~ItfiD--TPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a-- 404 (787)
T PRK05306 336 GGKITFLD--TPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGA-- 404 (787)
T ss_pred CEEEEEEE--CCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECcccccc--
Confidence 44566666 99999999999999999999999999988 3344332 2222 245899999999998542
Q ss_pred cCHHHHHH-------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 81 VSKEEGEQ-------FAKENG--LLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 81 v~~~~~~~-------~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+.... +...++ ++++++||++|.|++++|++|...
T Consensus 405 -~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 405 -NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred -CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 1222221 223333 679999999999999999998753
No 171
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=92.35 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=84.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCCccCHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.|++-.||.+|+...+..|..||.+.|++|||+|.+|..-|+.+.+.+.++.+... ..+|+++.+||.|+.... ..+
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa--~~e 138 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA--KVE 138 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc--chH
Confidence 34554455899999999999999999999999999999999998887777755443 569999999999986532 223
Q ss_pred HHHHHHH-----HcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 85 EGEQFAK-----ENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 85 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
+...-+. ....++.+|||.+++++.+..+|+..
T Consensus 139 eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 139 EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 3222222 22245899999999999999888754
No 172
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.44 E-value=1.2e-12 Score=110.58 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=76.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
..+.||| |||++.|..++..+++.+|++|+|+|+++. ++++.+ ..+.. .++|+++++||+|+...
T Consensus 295 ~kItfiD--TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I----~~~k~---~~iPiIVViNKiDl~~~--- 362 (742)
T CHL00189 295 QKIVFLD--TPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI----NYIQA---ANVPIIVAINKIDKANA--- 362 (742)
T ss_pred eEEEEEE--CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH----HHHHh---cCceEEEEEECCCcccc---
Confidence 4556666 999999999999999999999999999874 444433 22222 35899999999998642
Q ss_pred CHHHHHHH-------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 82 SKEEGEQF-------AKENG--LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 82 ~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..+++... ...++ ++++++||++|.|++++|+++....
T Consensus 363 ~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 363 NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 22322222 22233 6799999999999999999987763
No 173
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.44 E-value=6.4e-13 Score=110.50 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=81.0
Q ss_pred ccceeeEeeecccchhhhhhc------hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSI------TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++..+++|| |||++++... .+.++ +++|++++|+|.++.+. ...+..++.+ .++|+++++||+|
T Consensus 39 ~~~~i~lvD--tPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~D 110 (591)
T TIGR00437 39 QGEDIEIVD--LPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVD 110 (591)
T ss_pred CCeEEEEEE--CCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhH
Confidence 455678888 9999887654 44444 37999999999987432 2233333333 3589999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+.+.+. .+...+.+..+++++++||+++.|++++|+++.+..
T Consensus 111 l~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 111 EAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 86554443 456778888899999999999999999999998753
No 174
>PRK15494 era GTPase Era; Provisional
Probab=99.44 E-value=1.3e-12 Score=102.23 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=74.3
Q ss_pred ccceeeEeeecccchhh-hhhch-------hhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCC
Q 031249 3 FSQESFFWSLLQAGQES-FRSIT-------RSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~-~~~~~-------~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
++..+.||| |||..+ +..+. ..+++++|+++||+|..+ ++.... .|+..+... +.|+++|+||+
T Consensus 98 ~~~qi~~~D--TpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKi 170 (339)
T PRK15494 98 KDTQVILYD--TPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKI 170 (339)
T ss_pred CCeEEEEEE--CCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhh
Confidence 345667777 999843 33222 234789999999999765 344443 355555443 36778999999
Q ss_pred CCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
|+.+. ...++..++.... ..++++||+++.|++++|++|...+.
T Consensus 171 Dl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 171 DIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 98542 2445555555443 46999999999999999999987653
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.43 E-value=1.4e-12 Score=94.11 Aligned_cols=111 Identities=16% Similarity=0.031 Sum_probs=72.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-- 81 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-- 81 (163)
+..+.+|| |||+..+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+......
T Consensus 67 ~~~~~i~D--tpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 67 NLQITLVD--CPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred CceEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence 34556666 9999776443334566789999999998754433322222 1122 24799999999998642211
Q ss_pred CHHHHHHHH-H------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 82 SKEEGEQFA-K------ENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 82 ~~~~~~~~~-~------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
..++..... . ..+++++++||+++.|+++++++|..++.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 122222211 1 13567999999999999999999988764
No 176
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.5e-12 Score=103.30 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=83.7
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 87 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~ 87 (163)
.|-++||||++.|..|+..-.+-+|++|||++++|. -..+.++.+...+..++|++++.||+|.++ ..+....
T Consensus 56 ~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG----v~pQTiEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~ 128 (509)
T COG0532 56 GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG----VMPQTIEAINHAKAAGVPIVVAINKIDKPE---ANPDKVK 128 (509)
T ss_pred eEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC----cchhHHHHHHHHHHCCCCEEEEEecccCCC---CCHHHHH
Confidence 455567999999999999999999999999999985 223344445444446799999999999864 3455555
Q ss_pred HHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 88 QFAKENGL---------LFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 88 ~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.-..++|+ .++++||++|+|+.+|+..++-....+
T Consensus 129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 54555553 489999999999999999988776666
No 177
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.43 E-value=1.2e-12 Score=90.46 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=74.1
Q ss_pred cceeeEeeecccchhhhhh--------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRS--------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~--------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+.++.+|| |||...+.. ....++..+|++++|+|+++..+......+.. ....|+++++||+|+
T Consensus 48 ~~~~~i~D--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~ 119 (157)
T cd04164 48 GIPVRLID--TAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDL 119 (157)
T ss_pred CEEEEEEE--CCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhc
Confidence 34677777 999755432 22346789999999999998776665433322 245899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+.... .......+++++||+++.|+++++++|...+
T Consensus 120 ~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 120 LPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 654332 3344467799999999999999999987653
No 178
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.4e-13 Score=96.99 Aligned_cols=112 Identities=30% Similarity=0.519 Sum_probs=94.0
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+..|| |+|+|++..+...|+-.+.++|++||++..-++..+..|.+.+.+.+ .++|+++.|||.|..+. .+ ..
T Consensus 59 irf~~wd--tagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r-~~-k~ 133 (216)
T KOG0096|consen 59 IRFNVWD--TAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKAR-KV-KA 133 (216)
T ss_pred EEEEeee--cccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceecccc-cc-cc
Confidence 4555566 99999999999999999999999999999999999999999998877 45999999999997543 22 22
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+...+.+..++.++++||+++.|++..|-++.+.+.-
T Consensus 134 k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 134 KPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred ccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence 3334555667889999999999999999999987754
No 179
>PRK11058 GTPase HflX; Provisional
Probab=99.41 E-value=4e-12 Score=101.99 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=77.0
Q ss_pred eeeEeeecccchhhh--hhch------hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 6 ESFFWSLLQAGQESF--RSIT------RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~--~~~~------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
++.||| |+|..+. ..++ ...+++||++|+|+|++++.++..+..|...+......+.|+++|+||+|+..
T Consensus 246 ~~~l~D--TaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 246 ETVLAD--TVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred eEEEEe--cCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 666777 9997432 2222 23468999999999999988887775555545444334689999999999854
Q ss_pred CCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 78 RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 78 ~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
... .... ....+.+ ++++||++|.|++++++++...+...
T Consensus 324 ~~~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 324 DFE---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred chh---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 211 1111 1123555 58899999999999999999887543
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.40 E-value=4.2e-12 Score=103.02 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=80.7
Q ss_pred cceeeEeeecccchh----hhhhc---hhhhccCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhcC-----------
Q 031249 4 SQESFFWSLLQAGQE----SFRSI---TRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHAN----------- 61 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e----~~~~~---~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~----------- 61 (163)
+..+.||| |||.- ....+ .-.++.++|++|+|+|+++. +.+.++..+..++..+..
T Consensus 205 ~~~f~laD--tPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l 282 (500)
T PRK12296 205 DTRFTVAD--VPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL 282 (500)
T ss_pred CeEEEEEE--CCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh
Confidence 45677777 89952 11122 22356789999999999753 355566666666654431
Q ss_pred CCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 62 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 62 ~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
..+|++||+||+|+++...+ .+.........+++++++||+++.|+++++.+|.+.+....
T Consensus 283 ~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 283 AERPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred cCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 35899999999999653322 22233334455788999999999999999999988876644
No 181
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.40 E-value=5e-12 Score=104.86 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=75.6
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc---
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--- 80 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--- 80 (163)
+.||| |||++.|..++..+++.+|+++||||+++ +++++.+. .+.. .++|+++++||+|+.....
T Consensus 71 l~~iD--TpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 71 LLFID--TPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred EEEEE--CCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhcc
Confidence 56666 99999999999999999999999999987 55555442 2222 2589999999999853110
Q ss_pred -cC--------HHHH------------HHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 81 -VS--------KEEG------------EQFAK------------EN--GLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 81 -v~--------~~~~------------~~~~~------------~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
.+ .... .++.+ .+ ..+++++||++|+|+++++.++.....+.+
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 00 0000 01111 12 256999999999999999998876555433
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.40 E-value=3.3e-12 Score=106.15 Aligned_cols=109 Identities=21% Similarity=0.167 Sum_probs=80.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR 79 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~ 79 (163)
+..+.||| |||+++|...+..++.++|++++|+|+++ +++++.+. .+.. .++| +++++||+|+.+..
T Consensus 49 ~~~v~~iD--tPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 49 DYRLGFID--VPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred CEEEEEEE--CCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHH
Confidence 34566777 99999999888889999999999999988 45554432 2222 2466 99999999996533
Q ss_pred cc--CHHHHHHHHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 80 AV--SKEEGEQFAKEN----GLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 80 ~v--~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.+ ..+++..+++.+ +.+++++||+++.|+++++..+...+..
T Consensus 120 ~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 120 EIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 22 123455555554 4679999999999999999988765543
No 183
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.40 E-value=2.9e-12 Score=92.18 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=75.4
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHHH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEE 85 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~~ 85 (163)
.+..+||||+.+|.......++.+|++|+|+|+.+..... ....+..+... ++|+++++||+|+... .. ..++
T Consensus 71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~-~~~~~~~~ 145 (188)
T PF00009_consen 71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEK-ELEEIIEE 145 (188)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHH-HHHHHHHH
T ss_pred ceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhh-hHHHHHHH
Confidence 4444459999999998888899999999999998753322 33445555554 4889999999998621 11 0112
Q ss_pred HH-HHHHHc------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 86 GE-QFAKEN------GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 86 ~~-~~~~~~------~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.. .+.+.. .++++++||.+|.|+.++++.+.+.+
T Consensus 146 ~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 146 IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 22 333333 24699999999999999999998764
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.40 E-value=2.3e-12 Score=88.51 Aligned_cols=109 Identities=20% Similarity=0.129 Sum_probs=76.9
Q ss_pred cceeeEeeecccchhhhhh-------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRS-------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
...+.+|| |+|...+.. .+..+++.+|++++|+|..+..+..... ++..... ...|+++++||.|+.
T Consensus 44 ~~~~~~~D--t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~ 117 (163)
T cd00880 44 LGPVVLID--TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLL 117 (163)
T ss_pred CCcEEEEE--CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccC
Confidence 34677777 999766543 3445889999999999999877666544 3344333 458999999999986
Q ss_pred CCCccCHH---HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 77 HRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 77 ~~~~v~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
....+... .........+.+++++|++++.|++++++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 118 PEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 53322211 1122233345679999999999999999999765
No 185
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=1.3e-11 Score=86.52 Aligned_cols=110 Identities=20% Similarity=0.109 Sum_probs=73.9
Q ss_pred ccceeeEeeecccchhhh----------hhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESF----------RSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~----------~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
.+.++.+|| |||..+. ..+. ..+++++|++++|+|++++.+.... .++..+.. .+.|+++++|
T Consensus 48 ~~~~~~iiD--tpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~n 121 (174)
T cd01895 48 DGKKYTLID--TAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVN 121 (174)
T ss_pred CCeeEEEEE--CCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEe
Confidence 345677888 9996332 2111 2356799999999999988766543 33344333 2489999999
Q ss_pred CCCCCCCCccCHHHHHH-HHHHc----CCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSKEEGEQ-FAKEN----GLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
|+|+.+......++... +.+.. ..+++++||+++.|++++++.+.+.
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 122 KWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 99986543222233222 22333 3579999999999999999998764
No 186
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.37 E-value=3.5e-12 Score=102.64 Aligned_cols=106 Identities=20% Similarity=0.097 Sum_probs=72.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHH--HHHHhcCCCCeEEEEeeCCCCCCCCc-
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRA- 80 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~--~l~~~~~~~~p~ilv~nK~D~~~~~~- 80 (163)
+..+.||| |||+++|.......+..+|++++|+|+++.+++.. .++.. .+.... ...|+++++||+|+.+...
T Consensus 84 ~~~i~iiD--tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 84 KYEVTIVD--CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred CeEEEEEE--CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHH
Confidence 45667777 99999997766667899999999999998754321 11111 122222 2357999999999864211
Q ss_pred ---cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 031249 81 ---VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 81 ---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~ 113 (163)
...+++..+++..+ ++++++||+++.|+.+++.
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11345566676665 4699999999999987553
No 187
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.37 E-value=5.1e-12 Score=101.09 Aligned_cols=111 Identities=22% Similarity=0.179 Sum_probs=76.1
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--C
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~ 82 (163)
..+.||| |||+++|...+...+..+|++++|+|+++........+.+..+... ...|+++++||+|+.+.... .
T Consensus 80 ~~i~liD--tPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 80 RRVSFVD--APGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred cEEEEEE--CCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHH
Confidence 4566776 9999999988888888999999999998642111222223333222 12578999999998653211 1
Q ss_pred HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+++..+.... +.+++++||+++.|+++++++|...+
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 23344444433 56799999999999999999997654
No 188
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.36 E-value=3e-12 Score=85.14 Aligned_cols=66 Identities=38% Similarity=0.658 Sum_probs=55.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHH---HHHHHHhcCCCCeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+++|| ++|++.+...+..++..+|++++|||+++..||+.+..+ +..+.... .++|++||+||.|
T Consensus 51 ~~~~~d--~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 51 SLQFWD--FGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEE--ESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EEEEEe--cCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 467888 899999999888889999999999999999999987554 55555533 5599999999998
No 189
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=2.8e-11 Score=96.13 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=81.1
Q ss_pred eeeEeeecccchhhh-------hhchhhhccCCcEEEEEEECC---ChHHHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031249 6 ESFFWSLLQAGQESF-------RSITRSYYRGAAGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKC 73 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~-------~~~~~~~~~~ad~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~ 73 (163)
.+.|+| |||..+- ......+++++|++++|+|++ +.+.++.+..|++++..... ...|++||+||+
T Consensus 208 ~i~~vD--tPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 208 SFVVAD--IPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred EEEEEe--CCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 466666 9996431 111223678999999999988 45667777788888876532 358999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+.....+ .+....+.+..+ .+++++||+++.+++++++.|.+.+.+.
T Consensus 286 Dl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 286 DLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred ccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 98653332 233444555444 3689999999999999999998877543
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.32 E-value=2.3e-11 Score=97.83 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=77.1
Q ss_pred ccceeeEeeecccch--------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQ--------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~--------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
++..+.||| |||. +.+...+..+++.+|+++||+|+.+..+..+ ..+.+.+++. ++|+++|+||+|
T Consensus 45 ~~~~~~liD--TpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D 118 (429)
T TIGR03594 45 GGREFILID--TGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKID 118 (429)
T ss_pred CCeEEEEEE--CCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECcc
Confidence 355677777 9995 5566677788999999999999987544433 1233333332 489999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+.... ... ....++ +++++||.++.|+.++++++...+..
T Consensus 119 ~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 119 GKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 8653321 112 234566 69999999999999999999877643
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=3.1e-11 Score=102.66 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=80.0
Q ss_pred ccceeeEeeecccch----------hhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQ----------ESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~----------e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
.+..+.||| |||. +.|..+. ..+++.+|++++|+|+++..++.+.. ++..+.. .++|+++|+|
T Consensus 496 ~~~~~~liD--TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~N 569 (712)
T PRK09518 496 DGEDWLFID--TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFN 569 (712)
T ss_pred CCCEEEEEE--CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEE
Confidence 456777887 9995 3343333 33578999999999999987777653 4444433 3589999999
Q ss_pred CCCCCCCCccCHHHHHH-HHHHc----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249 72 KCDLAHRRAVSKEEGEQ-FAKEN----GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~ 128 (163)
|+|+.+... .+.... +...+ ..+++++||+++.|++++|+.+.+..........+
T Consensus 570 K~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T 629 (712)
T PRK09518 570 KWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPT 629 (712)
T ss_pred chhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence 999864211 122222 22221 24579999999999999999998887664443333
No 192
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.30 E-value=1.7e-11 Score=101.94 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=80.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-C
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-S 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-~ 82 (163)
+..+.||| |||+++|...+..+++.+|++++|+|+.+.. ......|+..+... ++|+++++||+|+.+.+.. .
T Consensus 63 ~~kinlID--TPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v 136 (594)
T TIGR01394 63 GTKINIVD--TPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEV 136 (594)
T ss_pred CEEEEEEE--CCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHH
Confidence 45566666 9999999999999999999999999998642 33445566666553 4899999999998643211 1
Q ss_pred HHHHHHHHH-------HcCCeEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAK-------ENGLLFLEASARTAQ----------NVEEAFIKTAAKIL 120 (163)
Q Consensus 83 ~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~lf~~l~~~~~ 120 (163)
..+...+.. ...++++++||+++. ++..+|+.++..+.
T Consensus 137 ~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 137 VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 233333332 234679999999995 78888888876653
No 193
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.30 E-value=2.4e-11 Score=97.29 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=71.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+.||| |||+++|..........+|++++|+|+++. ++.+.+ ..+... ...|+++|+||+|+.+....
T Consensus 86 ~i~liD--tPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~--~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 86 RVSFVD--APGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDII--GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEEEE--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHc--CCCcEEEEEEeeccccchhH
Confidence 466666 999999876555556678999999999853 333322 222222 12478999999998653221
Q ss_pred --CHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 82 --SKEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 82 --~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
..+++..+++.. +.+++++||+++.|++++++.|...+
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123344444332 46799999999999999999987654
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=2.8e-11 Score=97.55 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=72.0
Q ss_pred ccceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 3 FSQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
++..+.||| |||.+. +......+++.+|++|||+|+.+..+..+ +..|+. +. +.|+++|+||
T Consensus 47 ~~~~~~liD--T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK 118 (435)
T PRK00093 47 LGREFILID--TGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNK 118 (435)
T ss_pred CCcEEEEEE--CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEEC
Confidence 355677787 999876 33345667899999999999987543322 223332 22 5899999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHH
Q 031249 73 CDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 73 ~D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
+|+.+. ......+ ...++. ++++||+++.|+.++|+.++.
T Consensus 119 ~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 119 VDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 997431 1222222 345664 899999999999999999987
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=2e-11 Score=98.40 Aligned_cols=112 Identities=22% Similarity=0.159 Sum_probs=75.9
Q ss_pred ccceeeEeeecccchh----------hhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQE----------SFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e----------~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
.+..+.+|| |||.. .|..+. ..+++.+|++|+|+|+++..+..+. .++..+.+ .++|+++++|
T Consensus 219 ~~~~~~lvD--T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~N 292 (435)
T PRK00093 219 DGQKYTLID--TAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVN 292 (435)
T ss_pred CCeeEEEEE--CCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEE
Confidence 455678887 99953 333222 2378899999999999987766654 33344433 3489999999
Q ss_pred CCCCCCCCccCHHHHH-HHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSKEEGE-QFAKE----NGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+|+.+... .++.. .+... ...+++++||+++.|++++|+.+.+.....
T Consensus 293 K~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 293 KWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999864221 11221 12222 246799999999999999999988766544
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.29 E-value=2.4e-11 Score=88.88 Aligned_cols=104 Identities=17% Similarity=0.081 Sum_probs=68.7
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV- 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v- 81 (163)
++.++.||| |||+++|...+...++.+|++|+|+|+++...-. ....+..+.. . ...++|+|+||+|+.+....
T Consensus 75 ~~~~~~liD--TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-~-~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 75 PKRKFIIAD--TPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-L-GIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred CCceEEEEE--CCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-c-CCCcEEEEEEchhcccCCHHH
Confidence 345677777 9999998776677889999999999998753211 1122222222 2 12457889999998642211
Q ss_pred ---CHHHHHHHHHHcCC---eEEEEcCCCCCCHHHH
Q 031249 82 ---SKEEGEQFAKENGL---LFLEASARTAQNVEEA 111 (163)
Q Consensus 82 ---~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l 111 (163)
...+...+++.+++ +++++||+++.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 12344555666664 4899999999998753
No 197
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.28 E-value=4.4e-11 Score=83.00 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=71.5
Q ss_pred ceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 5 QESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
..+.+|| |||... +.......+..+|++++|+|+++..+.. ...++..+... +.|+++++||+|+.
T Consensus 51 ~~~~liD--tpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~Dl~ 124 (168)
T cd04163 51 AQIIFVD--TPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKIDLV 124 (168)
T ss_pred eEEEEEE--CCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEchhcc
Confidence 3456666 999543 2234455788999999999999862111 12233444433 47999999999986
Q ss_pred CCCccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 77 HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 77 ~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.......+....+....+ .+++++|++++.+++++++.|.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 322222233333444442 579999999999999999998654
No 198
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.28 E-value=6.2e-11 Score=85.33 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=71.8
Q ss_pred eeeEeeecccc----------hhhhhhchhhhccCC---cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 6 ESFFWSLLQAG----------QESFRSITRSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 6 ~~~l~d~Dt~G----------~e~~~~~~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
.+.||| ||| ++++..+...+++.+ +++++|+|.++..+..+. .+.+.+.. .+.|+++++||
T Consensus 71 ~l~l~D--tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK 144 (196)
T PRK00454 71 KLRLVD--LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTK 144 (196)
T ss_pred eEEEeC--CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEEC
Confidence 455566 999 466666777777654 678899998775443321 12222322 35899999999
Q ss_pred CCCCCCCccC--HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 73 CDLAHRRAVS--KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 73 ~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.|+.+..+.. .+++.........+++++||+++.|++++|+.|...+
T Consensus 145 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 145 ADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 9986532221 1223344444467899999999999999999987654
No 199
>PRK00089 era GTPase Era; Reviewed
Probab=99.27 E-value=5.7e-11 Score=91.07 Aligned_cols=109 Identities=18% Similarity=0.107 Sum_probs=72.3
Q ss_pred eeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC
Q 031249 7 SFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 78 (163)
Q Consensus 7 ~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~ 78 (163)
.++..+||||... +.......+.++|++++|+|+++..+- ....+++.+.. .+.|+++|+||+|+...
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKD 128 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCC
Confidence 3444455999533 223345577899999999999883211 11223333332 35899999999999643
Q ss_pred CccCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 79 RAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 79 ~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.........+.+..+ .+++++||+++.|++++++++...+
T Consensus 129 ~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 129 KEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 2222334445555444 4599999999999999999998765
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=3.8e-11 Score=102.11 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=73.3
Q ss_pred cceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+.+|| |||.+. +......+++.+|++|||+|+++..+..+ ..|...++. .++|+++|+||+|+
T Consensus 322 ~~~~~liD--T~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~ 395 (712)
T PRK09518 322 GTDFKLVD--TGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDD 395 (712)
T ss_pred CEEEEEEe--CCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECccc
Confidence 45677777 999653 34455668899999999999986422221 234555543 35899999999998
Q ss_pred CCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.... .....+. ..++ ..+++||+++.||.++|++++..+..
T Consensus 396 ~~~~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 396 QASE----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ccch----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 5421 1122221 2233 36789999999999999999887743
No 201
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.26 E-value=8.7e-11 Score=98.18 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=75.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR 79 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~ 79 (163)
+..+.||| |||+++|.......+.++|++++|+|+++ +++.+.+ ..+... ++| ++||+||+|+.++.
T Consensus 50 g~~i~~ID--tPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~ 120 (614)
T PRK10512 50 GRVLGFID--VPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEA 120 (614)
T ss_pred CcEEEEEE--CCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHH
Confidence 44567777 99999998777777899999999999987 3343332 223222 245 57999999986532
Q ss_pred ccC--HHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 80 AVS--KEEGEQFAKENG---LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 80 ~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+. .+++..++...+ .+++++||++|.|++++++.|....
T Consensus 121 ~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 121 RIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 221 234445555444 5699999999999999999987543
No 202
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-10 Score=93.88 Aligned_cols=110 Identities=16% Similarity=0.068 Sum_probs=83.6
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 87 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~ 87 (163)
.+.++||||+..|..|+..-.+-+|++++|+.++|. -..+.++.+......++|+|+.+||+|.++ -+++.+.
T Consensus 202 ~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~ 274 (683)
T KOG1145|consen 202 SITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG----VMPQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVK 274 (683)
T ss_pred EEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC----ccHhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHH
Confidence 345566999999999999999999999999999885 233344455555556799999999999754 4556655
Q ss_pred HHHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 88 QFAKENGL---------LFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 88 ~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
.-+...|+ .++++||++|+|++.|-+.++-...-+..
T Consensus 275 ~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdL 320 (683)
T KOG1145|consen 275 RELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDL 320 (683)
T ss_pred HHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhc
Confidence 44444443 48999999999999999888766554443
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.24 E-value=3.4e-11 Score=96.90 Aligned_cols=106 Identities=20% Similarity=0.075 Sum_probs=69.5
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-- 80 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~-- 80 (163)
+..+.||| |||+++|.......++.+|++|+|+|+++...+.. ...++..+... ...|+++++||+|+.+...
T Consensus 83 ~~~i~liD--tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 83 KYYFTIVD--CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred CeEEEEEE--CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHH
Confidence 44566666 99999987655566789999999999987211211 12222223222 1247999999999864211
Q ss_pred --cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 031249 81 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 81 --v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~lf~ 113 (163)
...+++..+++..+ .+++++||++|.|+++++.
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11245555665555 4599999999999988653
No 204
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.24 E-value=1.5e-10 Score=96.35 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=74.4
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc---
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--- 80 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--- 80 (163)
+.||| |||+++|..++...++.+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+...-.
T Consensus 73 i~~iD--TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 73 LLFID--TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred EEEEE--CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhc
Confidence 56777 99999999999999999999999999987 66666543 2222 3589999999999842100
Q ss_pred -cC--------HH-----------HHHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 81 -VS--------KE-----------EGEQFAKEN---------------GLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 81 -v~--------~~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.. .. +........ .++++++||.++.|+.+++..+.....+
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 00 00 011111211 2468999999999999999988755443
No 205
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.23 E-value=8.4e-11 Score=85.75 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=58.4
Q ss_pred cceeeEeeecccchhhhhhchhhhccCC-cEEEEEEECCCh-HHHHHHHHHHHHHHHh---cCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGA-AGALLVYDITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~a-d~~i~v~d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ilv~nK~D~~~ 77 (163)
+..++||| |||++++..++..+++++ +++|||+|+.+. .++..+..|+..+... ..+.+|+++++||+|+..
T Consensus 47 ~~~~~l~D--~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 47 GKKFRLVD--VPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CceEEEEE--CCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 45677888 999999999999999999 999999999987 6777777766554322 125799999999999854
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.22 E-value=4.2e-11 Score=88.28 Aligned_cols=103 Identities=22% Similarity=0.160 Sum_probs=66.5
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+..+.+|| |||+.+|...+...++.+|++|+|+|+++... |. .....+..... . ...|+++++||+|+.
T Consensus 75 ~~~~i~liD--tpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 75 EKYRFTILD--APGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-L-GVKQLIVAVNKMDDV 150 (219)
T ss_pred CCeEEEEEE--CCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-c-CCCeEEEEEEccccc
Confidence 355667777 99999888777777889999999999987421 11 11222222222 2 236899999999986
Q ss_pred CC--CccC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 031249 77 HR--RAVS----KEEGEQFAKENG-----LLFLEASARTAQNVE 109 (163)
Q Consensus 77 ~~--~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 109 (163)
.. .... .+++..+....+ .+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 31 1111 122333344443 459999999999987
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=97.18 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=75.8
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc-c
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-V 81 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~-v 81 (163)
.+..+.||| |||+.+|...+..+++.+|++|+|+|+++..... ...++..+.. .++|.++++||+|+...+. -
T Consensus 66 ~~~~inliD--TPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~ 139 (607)
T PRK10218 66 NDYRINIVD--TPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDW 139 (607)
T ss_pred CCEEEEEEE--CCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhH
Confidence 345667777 9999999999999999999999999998753322 2334444443 3488999999999864211 1
Q ss_pred CHHHHHHHHHH-------cCCeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 031249 82 SKEEGEQFAKE-------NGLLFLEASARTAQ----------NVEEAFIKTAAKI 119 (163)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~~~~Sa~~~~----------~i~~lf~~l~~~~ 119 (163)
..+++..+... ..++++.+||.+|. ++..+|+.++..+
T Consensus 140 vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 140 VVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred HHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 12233333211 34679999999998 4666666655544
No 208
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.21 E-value=2.2e-10 Score=85.45 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=52.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
+..+.||| |||+.+|...+..+++.+|++++|+|+++.... ....++..+... ++|+++++||+|+.
T Consensus 63 ~~~i~liD--TPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 63 DTKVNLID--TPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred CEEEEEEe--CCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 44566666 999999999999999999999999999886443 234555555443 48999999999985
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.20 E-value=1e-10 Score=80.15 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=75.8
Q ss_pred eeecccc----hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 10 WSLLQAG----QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 10 ~d~Dt~G----~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
+.+|||| ...|+.-+.....+||.+++|.|++++.+.-. ..+... ...|+|-|+||+|+... ....+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHH
Confidence 4567999 46666666777789999999999998754322 111111 24799999999999732 346788
Q ss_pred HHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHH
Q 031249 86 GEQFAKENGLL-FLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 86 ~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~ 116 (163)
++++++..|+. +|++|+.+++||+++.+.|-
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 88899999986 89999999999999998873
No 210
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.20 E-value=4.8e-11 Score=83.28 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=70.5
Q ss_pred ccceeeEeeecccchhhh------hhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESF------RSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~------~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+..+.|+| +||.-.+ ..+...++ ...|++|+|.|+++.+ .-.....++.+. ++|+++++||+|
T Consensus 45 ~~~~~~lvD--lPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D 116 (156)
T PF02421_consen 45 GDQQVELVD--LPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMD 116 (156)
T ss_dssp TTEEEEEEE------SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHH
T ss_pred cCceEEEEE--CCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHH
Confidence 356777777 8994222 22344444 6899999999998753 223445555554 499999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 115 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l 115 (163)
...++.+.. +...+.+..+++++++||++++|++++++.+
T Consensus 117 ~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 117 EAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 765444432 3566777889999999999999999998865
No 211
>COG1159 Era GTPase [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=87.17 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=77.0
Q ss_pred cceeeEeeecccchhh--------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQES--------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~--------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
..+.|+..+||||..+ ........+.++|+++||.|+++...-. ....++.++. .+.|+++++||+|.
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~ 126 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDK 126 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEcccc
Confidence 3477888888999432 2233455678999999999998753221 1234444544 34799999999998
Q ss_pred CCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..++.........+.....+ .++++||+++.|++.+.+.+..++.+
T Consensus 127 ~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 127 VKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred CCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 66544212333333333343 49999999999999999888766543
No 212
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.19 E-value=4.2e-10 Score=98.10 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=74.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS- 82 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~- 82 (163)
+.||| |||++.|..+....+..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+.......
T Consensus 528 i~fiD--TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 528 LLFID--TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISE 598 (1049)
T ss_pred EEEEE--CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCcccccccc
Confidence 67777 99999999988888999999999999987 55555443 2332 247999999999985321110
Q ss_pred ---------------HHHHH----HH---HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 83 ---------------KEEGE----QF---AKEN---------------GLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 83 ---------------~~~~~----~~---~~~~---------------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
..+.. .+ ..+. .++++++||++|+|+++++..|......
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 00110 01 1111 2468999999999999999888655444
No 213
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.18 E-value=1.1e-10 Score=83.25 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=65.0
Q ss_pred eeeEeeecccch----------hhhhhchhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 6 ESFFWSLLQAGQ----------ESFRSITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 6 ~~~l~d~Dt~G~----------e~~~~~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
.+.+|| |||. +.+..+...|++. +|++++|+|+++..+.... .++..+.. .++|+++++||
T Consensus 65 ~~~liD--tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK 138 (179)
T TIGR03598 65 GFRLVD--LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTK 138 (179)
T ss_pred cEEEEe--CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEEC
Confidence 567787 9993 4455566666664 5899999999875544443 23333433 25899999999
Q ss_pred CCCCCCCcc--CHHHHHHHHHHcC--CeEEEEcCCCCCCHH
Q 031249 73 CDLAHRRAV--SKEEGEQFAKENG--LLFLEASARTAQNVE 109 (163)
Q Consensus 73 ~D~~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 109 (163)
+|+.+.... ..++++..+...+ .+++++||++++|++
T Consensus 139 ~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 998643211 2344444555543 469999999999973
No 214
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.16 E-value=2.8e-10 Score=81.97 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=67.7
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHH-----HH
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KE 92 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~-----~~ 92 (163)
+.|..++..+++++|++++|+|+.+.... |...+.... .++|+++|+||+|+... .........+. +.
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhh
Confidence 34678899999999999999999875421 222222222 45899999999998653 23334444343 23
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 93 NGL---LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 93 ~~~---~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.+. +++++||+++.|++++++.+...+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 333 5899999999999999999987763
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.16 E-value=7.9e-10 Score=82.30 Aligned_cols=109 Identities=24% Similarity=0.147 Sum_probs=73.2
Q ss_pred CccceeeEeeecccchhhhh-------hchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHH-----------------
Q 031249 2 FFSQESFFWSLLQAGQESFR-------SITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDA----------------- 56 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~-------~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l----------------- 56 (163)
+++..+++|| |||..+.. .....+++++|++++|+|+++.. ....+...++..
T Consensus 44 ~~~~~i~l~D--tpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~ 121 (233)
T cd01896 44 YKGAKIQLLD--LPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKK 121 (233)
T ss_pred ECCeEEEEEE--CCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEe
Confidence 3567788888 99974332 12345789999999999998755 333332222210
Q ss_pred ------------------------HHhc---------------------C---CCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249 57 ------------------------RQHA---------------------N---PNMSIMLVGNKCDLAHRRAVSKEEGEQ 88 (163)
Q Consensus 57 ------------------------~~~~---------------------~---~~~p~ilv~nK~D~~~~~~v~~~~~~~ 88 (163)
.++. . ..+|+++|+||+|+. ..++...
T Consensus 122 ~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~ 196 (233)
T cd01896 122 KGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDL 196 (233)
T ss_pred cCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHH
Confidence 0000 0 126999999999984 3455555
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 89 FAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++. ..+++++||+++.|++++|+.+.+.+
T Consensus 197 ~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 197 LAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred Hhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 544 34589999999999999999998754
No 216
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=8.6e-10 Score=79.97 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=66.9
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC---
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS--- 82 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~--- 82 (163)
.++..+||||+.+|.......+..+|++++|+|+...-.- ....++..+... ++| +|+++||+|+....+..
T Consensus 65 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~ 140 (195)
T cd01884 65 RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELV 140 (195)
T ss_pred eEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHH
Confidence 4455566999999887777788899999999999864221 223344444443 366 77899999986422211
Q ss_pred HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 031249 83 KEEGEQFAKENG-----LLFLEASARTAQNVE 109 (163)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 109 (163)
.+++..+....+ .+++++||.+|.++.
T Consensus 141 ~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 141 EMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 234555555544 569999999999853
No 217
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.14 E-value=5.6e-10 Score=95.39 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=80.4
Q ss_pred ccceeeEeeecccchhhhhhc----------hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 3 FSQESFFWSLLQAGQESFRSI----------TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~----------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
++..+.+|| |||...+... ...++ ..+|++++|+|.++.+.. ..+..++.+. ++|+++++
T Consensus 48 ~~~~i~lvD--tPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVl 119 (772)
T PRK09554 48 TDHQVTLVD--LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVAL 119 (772)
T ss_pred CceEEEEEE--CCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEE
Confidence 345677887 9998776432 23343 489999999999885432 2344555443 48999999
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
||+|+.+.+.+ ..+...+.+..+++++++|+.++.|++++.+.+....
T Consensus 120 NK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 120 NMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 99998655444 3556778888999999999999999999998887654
No 218
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.10 E-value=3.2e-10 Score=79.13 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=65.1
Q ss_pred hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEE
Q 031249 20 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 99 (163)
Q Consensus 20 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (163)
+..+++...+++|++|+|+|+.++..... ..+...+.. .++|+++|+||+|+.+.... .....+....+.++++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 35577888899999999999987543332 122222222 35899999999998532111 1111233445678999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 031249 100 ASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999977654
No 219
>PRK12289 GTPase RsgA; Reviewed
Probab=99.10 E-value=4.3e-10 Score=88.18 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=70.2
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+|-..+.+..+.++|.+++|+|+.++. .+..+..|+..+.. .++|++||+||+|+.+..+. +........+++.
T Consensus 77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~ 151 (352)
T PRK12289 77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQ 151 (352)
T ss_pred ccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCe
Confidence 344556677899999999999998765 45556777766633 45899999999999542211 2222333567889
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q 031249 97 FLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
++++||.++.|++++++.+..
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhcc
Confidence 999999999999999988854
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.10 E-value=3.8e-10 Score=82.79 Aligned_cols=65 Identities=25% Similarity=0.227 Sum_probs=50.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+.||| |||+++|...+..+++.+|++++|+|+++..++.. ..++..+.. .+.|+++++||+|+.
T Consensus 72 ~i~iiD--tpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 72 LFNIID--TPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEE--CCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 455555 99999998888999999999999999987765543 344444433 248999999999974
No 221
>PRK09866 hypothetical protein; Provisional
Probab=99.09 E-value=2e-09 Score=89.16 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred eeeEeeecccchhh-----hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 6 ESFFWSLLQAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~-----~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
..|+..+||||... ...+....++++|+++||+|++...+..+ ....+.+.+.. ...|+++|+||+|+.++..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 34666677999643 23344557999999999999987544443 22344444432 2259999999999854322
Q ss_pred cCHHHHHHHHH----HcCC---eEEEEcCCCCCCHHHHHHHHHH
Q 031249 81 VSKEEGEQFAK----ENGL---LFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 81 v~~~~~~~~~~----~~~~---~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
-..+....+.. ..++ .++++||+.|.|++.+++.+..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 22344444432 2222 4999999999999999999876
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.09 E-value=2.4e-09 Score=79.29 Aligned_cols=105 Identities=18% Similarity=0.085 Sum_probs=67.2
Q ss_pred eeeEeeecccchhhhhhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC-
Q 031249 6 ESFFWSLLQAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS- 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~- 82 (163)
.+.|. ||||+++|.......+ ..+|++++|+|++.... .....++..+... ++|+++++||+|+.+.....
T Consensus 85 ~i~li--DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 85 LVTFI--DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred EEEEE--ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHHHH
Confidence 34454 5999999965433333 37899999999876533 2223444545443 48999999999985432211
Q ss_pred -HHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 031249 83 -KEEGEQFAKE--------------------------NGLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 83 -~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
.++...++.. ...+++.+|+.+|.|++++...|.
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1222222221 123799999999999999887763
No 223
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.08 E-value=1.3e-09 Score=86.79 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=84.0
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
|..+.|-.+||||+=.|..-....+..|.|+++|+|++..---+.+...|-.+.. +.-++-|+||+|++.. .+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dp 145 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DP 145 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CH
Confidence 4566777777999999998888889999999999999987544555555555543 4689999999999763 23
Q ss_pred HHH-HHHHHHcCCe---EEEEcCCCCCCHHHHHHHHHHHH
Q 031249 84 EEG-EQFAKENGLL---FLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 84 ~~~-~~~~~~~~~~---~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.. .++-.-.|++ .+.+||++|.||+++++.+++.+
T Consensus 146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 433 3444556765 89999999999999998887765
No 224
>PRK00098 GTPase RsgA; Reviewed
Probab=99.06 E-value=8.2e-10 Score=85.05 Aligned_cols=95 Identities=22% Similarity=0.190 Sum_probs=68.9
Q ss_pred hhhhhchhhhc-------cCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH
Q 031249 18 ESFRSITRSYY-------RGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 89 (163)
Q Consensus 18 e~~~~~~~~~~-------~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~ 89 (163)
+|...+++... .++|++++|+|+.++.++.. +..|+..+.. .++|+++|+||+|+.+... ...+....
T Consensus 61 ~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~ 136 (298)
T PRK00098 61 ERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLAL 136 (298)
T ss_pred CCCceEECCCCccccceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHH
Confidence 44555555554 89999999999988765444 4667776654 3589999999999953221 12233444
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 031249 90 AKENGLLFLEASARTAQNVEEAFIKTA 116 (163)
Q Consensus 90 ~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 116 (163)
.+..+++++++||+++.|+++++..+.
T Consensus 137 ~~~~g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 137 YRAIGYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence 556788999999999999999998763
No 225
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.8e-09 Score=87.28 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=79.7
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
.+..+.-+||||+-+|..-....+.-+||+|+|+|++..---+....++..+.. +.-+|.|+||+|++.. .++
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~a---dpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSA---DPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCC---CHH
Confidence 345555556999999999999999999999999999986544444455555533 4678999999999763 234
Q ss_pred HHH-HHHHHcCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 85 EGE-QFAKENGL---LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 85 ~~~-~~~~~~~~---~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
... ++-..+++ +++.+||++|.+++++++.+++.+
T Consensus 196 ~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 196 RVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 433 23334444 489999999999999888887655
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.04 E-value=1.3e-09 Score=80.54 Aligned_cols=67 Identities=25% Similarity=0.228 Sum_probs=50.4
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
.+++..|||||+++|......+++.+|++++|+|++...+... ...+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 3444444499999999999999999999999999998755543 233333333 347999999999974
No 227
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.04 E-value=2e-09 Score=83.53 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=83.9
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
++..+.+|| ++|+...+..|..++.+++++|||+|+++. ..+.+....++.+..... .++|++|++|
T Consensus 159 ~~~~~~~~D--vgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 159 KNLKFRMFD--VGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred cceEEEEEC--CCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence 456677777 899999999999999999999999999873 345555555555544332 5699999999
Q ss_pred CCCCCCCC----------------ccCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 72 KCDLAHRR----------------AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 72 K~D~~~~~----------------~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
|.|+.+++ .-..+.+..+... ..+-+..++|.+..++..+|+.+...++...
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 99963210 1123344333221 1122566789999999999999988887654
No 228
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.04 E-value=1.1e-09 Score=84.01 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=66.5
Q ss_pred ccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCC
Q 031249 28 YRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 106 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (163)
+.++|.+++|+|++++. ++..+..|+..+... ++|+++|+||+|+.++. ............+++++++||+++.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCCc
Confidence 88999999999999887 788888888877653 48999999999985431 1112223344578899999999999
Q ss_pred CHHHHHHHHHH
Q 031249 107 NVEEAFIKTAA 117 (163)
Q Consensus 107 ~i~~lf~~l~~ 117 (163)
|+++++..|..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999887753
No 229
>PRK12736 elongation factor Tu; Reviewed
Probab=99.04 E-value=2.8e-09 Score=85.10 Aligned_cols=95 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC--
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS-- 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~-- 82 (163)
.+.||| |||+++|......-+..+|++++|+|+++...-. ...++..+... ++| +|+++||+|+.+..+..
T Consensus 76 ~i~~iD--tPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~ 149 (394)
T PRK12736 76 HYAHVD--CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLEL 149 (394)
T ss_pred EEEEEE--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHH
Confidence 455555 9999998776666678899999999998642211 22333334332 467 67889999986432221
Q ss_pred -HHHHHHHHHHcC-----CeEEEEcCCCCC
Q 031249 83 -KEEGEQFAKENG-----LLFLEASARTAQ 106 (163)
Q Consensus 83 -~~~~~~~~~~~~-----~~~~~~Sa~~~~ 106 (163)
.+++..++...+ .+++++||+++.
T Consensus 150 i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 150 VEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 234555555555 469999999983
No 230
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.02 E-value=1.4e-09 Score=88.06 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=68.5
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHH-------HHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCC
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFN-------HLSSWLEDARQHANPNM-SIMLVGNKCDLAHRR 79 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~ilv~nK~D~~~~~ 79 (163)
.+..+||||+++|.......+..+|++|+|+|+++. .|+ ...+++..+.. .++ ++|+++||+|+.+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~- 160 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP- 160 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch-
Confidence 444455999999999888899999999999999872 232 22333333322 235 57889999997521
Q ss_pred cc-------CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 031249 80 AV-------SKEEGEQFAKENG-----LLFLEASARTAQNVEE 110 (163)
Q Consensus 80 ~v-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 110 (163)
.. ..+++..+++..+ ++++++||.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1345666777666 5599999999999854
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.02 E-value=2.8e-09 Score=85.13 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=62.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCccC--
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS-- 82 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v~-- 82 (163)
.+.||| |||+++|..........+|++++|+|+++..... ..+++..+... ++|.+ +++||+|+.+..+..
T Consensus 76 ~~~liD--tpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~ 149 (394)
T TIGR00485 76 HYAHVD--CPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLEL 149 (394)
T ss_pred EEEEEE--CCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHH
Confidence 456666 9999999765555667889999999998732211 12333334332 36655 689999986532221
Q ss_pred -HHHHHHHHHHcC-----CeEEEEcCCCCC
Q 031249 83 -KEEGEQFAKENG-----LLFLEASARTAQ 106 (163)
Q Consensus 83 -~~~~~~~~~~~~-----~~~~~~Sa~~~~ 106 (163)
.+++..++..++ ++++++||.++.
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 150 VEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 234566666665 579999999875
No 232
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.01 E-value=2.4e-09 Score=84.49 Aligned_cols=95 Identities=26% Similarity=0.317 Sum_probs=71.8
Q ss_pred hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH----HHHH
Q 031249 17 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAKE 92 (163)
Q Consensus 17 ~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~----~~~~ 92 (163)
.++|..+...+.+.++++++|+|+.+.. ..|.+.+.+.. .+.|+++|+||+|+.. +.+..++... +++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 5788899999999999999999987643 23445555443 2579999999999865 3344444443 3556
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 93 NGL---LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 93 ~~~---~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.++ .++++||+++.|++++|+.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 38999999999999999998653
No 233
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.01 E-value=6.2e-10 Score=90.30 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=86.4
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHH-HHHHHHHhcC--CCCeEEEEeeCCCCCCCCcc
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHAN--PNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~--~~~p~ilv~nK~D~~~~~~v 81 (163)
++..|.| |+-.+.-......-++.||++.+||+++++.+++.+.. |+..+++..+ .++|+||||||.|......-
T Consensus 56 vpt~ivD--~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 56 VPTSIVD--TSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CceEEEe--cccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 3455555 77655555566788999999999999999999999866 9999988664 57999999999998654322
Q ss_pred CHHH-HHHHHHHcC-Ce-EEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 82 SKEE-GEQFAKENG-LL-FLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 82 ~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
+.+. ..-+..++. +. +++|||++..++.++|+...+.++.
T Consensus 134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 2222 223333332 33 8999999999999999998887764
No 234
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.99 E-value=7e-09 Score=84.05 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=70.6
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEE 85 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~ 85 (163)
++..+||||+++|-.....-+..+|++++|+|++....-....+.+..+.. . .-.|+++++||+|+.+...+. .++
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-l-gi~~iIVvlNKiDlv~~~~~~~~~~e 195 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-M-KLKHIIILQNKIDLVKEAQAQDQYEE 195 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-c-CCCcEEEEEecccccCHHHHHHHHHH
Confidence 455566999999977666677899999999999863101111222222222 2 124789999999986422211 123
Q ss_pred HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 86 GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 86 ~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
+..+... ...+++++||+++.|++.|++.|...
T Consensus 196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 3333322 25679999999999999888888653
No 235
>PRK12288 GTPase RsgA; Reviewed
Probab=98.98 E-value=3.6e-09 Score=82.99 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=66.8
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEEcCCCCC
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTAQ 106 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v-~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (163)
..++|.+++|++.+...++..+..|+..+.. .++|++||+||+|+.+..+. ...+........+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999988899999999875543 35899999999999653211 1122233345668899999999999
Q ss_pred CHHHHHHHHHH
Q 031249 107 NVEEAFIKTAA 117 (163)
Q Consensus 107 ~i~~lf~~l~~ 117 (163)
|++++++.|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988854
No 236
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=8.6e-09 Score=81.95 Aligned_cols=121 Identities=19% Similarity=0.091 Sum_probs=82.6
Q ss_pred ccceeeEeeecccchhh----------hhhc-hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQES----------FRSI-TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~----------~~~~-~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
++..+.+.| |||..+ |... ....+..+|.+++|.|++.+-+-++. .....+.+ .+.+++++.|
T Consensus 224 ~~~~~~liD--TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvN 297 (444)
T COG1160 224 DGRKYVLID--TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVN 297 (444)
T ss_pred CCeEEEEEE--CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEE
Confidence 466777777 999644 3322 23367899999999999987655543 33333433 3589999999
Q ss_pred CCCCCCCCccCHHHHHHHHH-Hc----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 72 KCDLAHRRAVSKEEGEQFAK-EN----GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 72 K~D~~~~~~v~~~~~~~~~~-~~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
|+|+.++.....++.+.... .+ ..+++.+||+++.++..+|+.+............++
T Consensus 298 KWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts 360 (444)
T COG1160 298 KWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTS 360 (444)
T ss_pred ccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence 99987754445555433322 22 346899999999999999999977766554444443
No 237
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.96 E-value=5.8e-09 Score=72.49 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=67.3
Q ss_pred eeeEeeecccc----------hhhhhhchhhhcc---CCcEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 6 ESFFWSLLQAG----------QESFRSITRSYYR---GAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 6 ~~~l~d~Dt~G----------~e~~~~~~~~~~~---~ad~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
.+.+|| |+| .+.+..++..|+. +.+++++++|.+...+ ...+..|+.. . ..|+++++
T Consensus 46 ~~~~~D--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~ 117 (170)
T cd01876 46 KFRLVD--LPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVL 117 (170)
T ss_pred eEEEec--CCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEE
Confidence 455666 898 3456666666665 4578999999876532 2223333332 2 37999999
Q ss_pred eCCCCCCCCccC--HHHHHHHHH--HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVS--KEEGEQFAK--ENGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 71 nK~D~~~~~~v~--~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
||+|+....... ........+ ....+++++|++++.++.+++++|.+.
T Consensus 118 nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 118 TKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 999985432211 112222222 234568999999999999999999765
No 238
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.96 E-value=9.7e-09 Score=80.51 Aligned_cols=121 Identities=19% Similarity=0.166 Sum_probs=84.7
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEe
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVG 70 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~ilv~ 70 (163)
+++..+.+|| .+|+..++..|..++.+++++|||+|+++. ..+.+....++.+..... .++|++|++
T Consensus 181 ~~~~~~~~~D--vgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~ 258 (342)
T smart00275 181 VKKLFFRMFD--VGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFL 258 (342)
T ss_pred ECCeEEEEEe--cCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 3466778888 799999999999999999999999999873 245555555666554322 569999999
Q ss_pred eCCCCCCCC---------------ccCHHHHHHHHH-----Hc------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 71 NKCDLAHRR---------------AVSKEEGEQFAK-----EN------GLLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 71 nK~D~~~~~---------------~v~~~~~~~~~~-----~~------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
||.|+..++ .-..+.+..+.. .. .+-++.++|.+..++..+|+.+...+.+...
T Consensus 259 NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 259 NKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred ecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 999974210 012233333221 11 1235677899999999999998888776543
No 239
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.95 E-value=7.7e-09 Score=78.47 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=51.4
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
++..+.||| |||+++|......+++.+|++|+|+|+++.... ....+++.... .++|+++++||+|+..
T Consensus 69 ~~~~i~liD--TPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 69 RDCVINLLD--TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred CCEEEEEEE--CCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 355677777 999999988778889999999999999875322 22334444333 3589999999999854
No 240
>PRK12735 elongation factor Tu; Reviewed
Probab=98.94 E-value=9.8e-09 Score=82.03 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=62.5
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCcc---CH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAV---SK 83 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v---~~ 83 (163)
++..+||||+++|.......+..+|++++|+|+.+...- ....++..+.. .++|.+ +++||+|+.+..+. ..
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~ 151 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVE 151 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHH
Confidence 334444999999877666777899999999999874321 22234444433 246755 57999998642221 12
Q ss_pred HHHHHHHHHcC-----CeEEEEcCCCCCC
Q 031249 84 EEGEQFAKENG-----LLFLEASARTAQN 107 (163)
Q Consensus 84 ~~~~~~~~~~~-----~~~~~~Sa~~~~~ 107 (163)
.++..++..++ ++++++||.++.+
T Consensus 152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 152 MEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHHcCCCcCceeEEecchhcccc
Confidence 24555666554 5689999999853
No 241
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.93 E-value=6.5e-09 Score=82.83 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=76.6
Q ss_pred CccceeeEeeecccchhhhhhc--------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 2 FFSQESFFWSLLQAGQESFRSI--------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
++|.+++|.| |||.+..... ....++.||.++||+|.+.+.+-.+. ..+. ....++|+++|.||.
T Consensus 262 i~G~pv~l~D--TAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~ 334 (454)
T COG0486 262 LNGIPVRLVD--TAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKA 334 (454)
T ss_pred ECCEEEEEEe--cCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEech
Confidence 4688999998 9997654432 34568899999999999985332222 1122 233568999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
|+........ .....+.+++.+|++++.|++.+.+.|.+.+...
T Consensus 335 DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 335 DLVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hcccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 9966433211 1112244689999999999999999998777665
No 242
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=80.86 Aligned_cols=106 Identities=17% Similarity=0.052 Sum_probs=70.8
Q ss_pred cceeeEeeecccchhhhh---------hchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 4 SQESFFWSLLQAGQESFR---------SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~---------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+.+|.+.| |+|.+... ......+..||++|||+|....-+-.+ ....+.++. .++|++||+||+|
T Consensus 50 ~~~f~lID--TgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D 123 (444)
T COG1160 50 GREFILID--TGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKID 123 (444)
T ss_pred CceEEEEE--CCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEccc
Confidence 44566666 99965322 234456789999999999876433322 122233332 3489999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
... .++...-...+|+ .++.+||.+|.|+.+++++++..+.
T Consensus 124 ~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 124 NLK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred Cch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 742 1222222234455 4899999999999999999998874
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.92 E-value=1.7e-08 Score=83.26 Aligned_cols=67 Identities=21% Similarity=0.171 Sum_probs=50.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
+..+.||| |||+++|......+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 78 ~~~inliD--TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 DCLINLLD--TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CEEEEEEE--CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 45667777 999999998888889999999999999875322 23344444433 358999999999975
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.91 E-value=9.8e-09 Score=82.27 Aligned_cols=102 Identities=21% Similarity=0.145 Sum_probs=65.0
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-- 82 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-- 82 (163)
..+.||| |||+++|.......+..+|++|+|+|+.....-+. .+.+..+.... ..++++++||+|+.+.....
T Consensus 80 ~~~~liD--tPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 80 RKFIVAD--TPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred eEEEEEe--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHH
Confidence 3455555 99999997766667889999999999876432111 11222222222 24688999999986422111
Q ss_pred --HHHHHHHHHHcC---CeEEEEcCCCCCCHHHH
Q 031249 83 --KEEGEQFAKENG---LLFLEASARTAQNVEEA 111 (163)
Q Consensus 83 --~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l 111 (163)
.++...+.+..+ .+++++||++|.|+.+.
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122333444444 35999999999998863
No 245
>PRK13768 GTPase; Provisional
Probab=98.89 E-value=1.4e-08 Score=76.44 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=69.3
Q ss_pred eeeEeeecccchhhh---hhchhhhccC-----CcEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 6 ESFFWSLLQAGQESF---RSITRSYYRG-----AAGALLVYDITRRETFNHLS--SWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~---~~~~~~~~~~-----ad~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
.+.+|| |||+.++ ...+..+++. ++++++|+|+....+..+.. .|+....... .++|+++|+||+|+
T Consensus 98 ~~~~~d--~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVD--TPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEe--CCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhh
Confidence 567777 9998764 3344444433 89999999996543332221 2232222222 35899999999998
Q ss_pred CCCCccCHHHHHH----------------------------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 76 AHRRAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 76 ~~~~~v~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
.+..+. ++... ..+..+ .+++++|++++.|++++++++.+.+
T Consensus 175 ~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 175 LSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred cCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 654322 11111 122333 4689999999999999999997654
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.88 E-value=7.5e-09 Score=84.39 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=63.6
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
..+.||| |||+++|.......+..+|++++|+|++....-.. ...+..+.... ..|+++++||+|+.+..+...+
T Consensus 107 ~~i~~iD--TPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 107 RKFIIAD--TPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cEEEEEE--CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence 3455555 99999997655555799999999999976421111 11111122211 2478999999998642211112
Q ss_pred ----HHHHHHHHcC----CeEEEEcCCCCCCHHHHH
Q 031249 85 ----EGEQFAKENG----LLFLEASARTAQNVEEAF 112 (163)
Q Consensus 85 ----~~~~~~~~~~----~~~~~~Sa~~~~~i~~lf 112 (163)
+...+.+..+ .+++++||+++.|+.++-
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2223333333 569999999999998653
No 247
>PRK13351 elongation factor G; Reviewed
Probab=98.88 E-value=2.3e-08 Score=85.03 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=53.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.||| |||+.+|...+..+++.+|++++|+|+++....... ..+..+... ++|+++++||+|+..
T Consensus 72 ~~~i~liD--tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~~---~~p~iiviNK~D~~~ 139 (687)
T PRK13351 72 NHRINLID--TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADRY---GIPRLIFINKMDRVG 139 (687)
T ss_pred CEEEEEEE--CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHhc---CCCEEEEEECCCCCC
Confidence 45666776 999999999999999999999999999987655543 333444332 589999999999863
No 248
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=9.2e-09 Score=71.46 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=83.6
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCCCCc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ilv~nK~D~~~~~~ 80 (163)
+++..+.-+| .+|+..-+..|+.|+..+|+++|.+|+.|.+-|......++.+.... ....|+++.+||+|.+..
T Consensus 61 Ig~m~ftt~D--LGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a-- 136 (193)
T KOG0077|consen 61 IGGMTFTTFD--LGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA-- 136 (193)
T ss_pred ecCceEEEEc--cccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--
Confidence 3455666666 79999999999999999999999999999999988877777764433 256999999999998653
Q ss_pred cCHHHHHHHHH---HcC--------------CeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 81 VSKEEGEQFAK---ENG--------------LLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 81 v~~~~~~~~~~---~~~--------------~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
..+++...... ..+ +.++.||...+.+..+.|.|+...
T Consensus 137 ~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 137 ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 34444322111 111 237889998888888888887654
No 249
>CHL00071 tufA elongation factor Tu
Probab=98.84 E-value=2.5e-08 Score=79.99 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=65.8
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC---
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS--- 82 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~--- 82 (163)
.++..+||||+++|.......+..+|++++|+|+..... .....++..+... ++| +|+++||+|+.+..+..
T Consensus 75 ~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred eEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHH
Confidence 345556699999987766777889999999999986432 2223344444432 467 77899999986532211
Q ss_pred HHHHHHHHHHcC-----CeEEEEcCCCCCCH
Q 031249 83 KEEGEQFAKENG-----LLFLEASARTAQNV 108 (163)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 108 (163)
.+++..+++..+ ++++++||.++.++
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 234555555544 56999999998754
No 250
>PRK00049 elongation factor Tu; Reviewed
Probab=98.81 E-value=6.9e-08 Score=77.19 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=63.3
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCCCCccC---
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS--- 82 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~~~~~~v~--- 82 (163)
.++..+||||+++|.......+..+|++++|+|+..... .....++..+... ++|.+ +++||+|+.+..+..
T Consensus 75 ~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~ 150 (396)
T PRK00049 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELV 150 (396)
T ss_pred eEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHH
Confidence 345555699999987766677899999999999986432 2223344444433 47875 589999986422211
Q ss_pred HHHHHHHHHHcC-----CeEEEEcCCCCCC
Q 031249 83 KEEGEQFAKENG-----LLFLEASARTAQN 107 (163)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 107 (163)
..++..+....+ .+++++||.++.+
T Consensus 151 ~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 151 EMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 123444444433 5689999998753
No 251
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.80 E-value=2e-08 Score=66.74 Aligned_cols=98 Identities=19% Similarity=0.112 Sum_probs=74.3
Q ss_pred eecccc----hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 11 SLLQAG----QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 11 d~Dt~G----~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
++|||| +.++++-+.....++|.+++|-.++++.+.-. .-+... ...|+|-|.+|.|+.++. ..+..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDA--DISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchH--hHHHH
Confidence 778999 56666666777889999999999999754221 011111 236799999999997643 35677
Q ss_pred HHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHH
Q 031249 87 EQFAKENGLL-FLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 87 ~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
+.|+.+.|.. +|++|+.++.|+++++..|..
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 8888888865 999999999999999988754
No 252
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.80 E-value=2e-08 Score=76.38 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=49.6
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
.++..+||||+.+|...+..+++.+|++|+|+|+.+...-. ...++..+... ++|+++++||+|+.+
T Consensus 64 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~D~~~ 130 (270)
T cd01886 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 34444559999999988999999999999999997743222 22344444443 489999999999864
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.79 E-value=4.2e-08 Score=82.75 Aligned_cols=100 Identities=20% Similarity=0.123 Sum_probs=64.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-- 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~-- 83 (163)
.+.|+| |||+++|.......+..+|++++|+|++....-. ....+..+.... ..|++|++||+|+.+......
T Consensus 105 ~~~liD--tPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 105 KFIVAD--TPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred eEEEEE--CCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHHH
Confidence 455555 9999998765556788999999999997643211 112222222221 257899999999864211111
Q ss_pred --HHHHHHHHHcCC---eEEEEcCCCCCCHHH
Q 031249 84 --EEGEQFAKENGL---LFLEASARTAQNVEE 110 (163)
Q Consensus 84 --~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 110 (163)
.+...+.+..++ +++++||+++.|+.+
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 223334455554 489999999999874
No 254
>COG2262 HflX GTPases [General function prediction only]
Probab=98.79 E-value=2e-07 Score=73.32 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=81.2
Q ss_pred ceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 5 QESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 5 ~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
..+.+-| |-|- +.|.+. -.-..+||.++.|+|++++.-.+.+.....-+.+..-..+|+|+|.||+|+
T Consensus 240 ~~vlLtD--TVGFI~~LP~~LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 240 RKVLLTD--TVGFIRDLPHPLVEAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred ceEEEec--CccCcccCChHHHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 3455555 8882 333332 224568999999999999976666666666665554456899999999997
Q ss_pred CCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccccc
Q 031249 76 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVN 132 (163)
Q Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~ 132 (163)
..+.. ....+..... ..+.+||+++.|++.+...|...+...........+.
T Consensus 317 ~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 317 LEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred cCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 55332 1111212222 5899999999999999999988887666555544444
No 255
>PLN03127 Elongation factor Tu; Provisional
Probab=98.77 E-value=6e-08 Score=78.59 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=58.2
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccCH-
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSK- 83 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~~- 83 (163)
..++..+||||+++|.......+..+|++++|+|+++...- ...+.+..+... ++| +|+++||+|+.+..+...
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~ 198 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLEL 198 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHH
Confidence 34666777999998876555556679999999998764322 223344444433 478 578899999865322111
Q ss_pred --HHHHHHHHHcC-----CeEEEEcCC
Q 031249 84 --EEGEQFAKENG-----LLFLEASAR 103 (163)
Q Consensus 84 --~~~~~~~~~~~-----~~~~~~Sa~ 103 (163)
.+...+....+ ++++++|+.
T Consensus 199 i~~~i~~~l~~~~~~~~~vpiip~Sa~ 225 (447)
T PLN03127 199 VEMELRELLSFYKFPGDEIPIIRGSAL 225 (447)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEeccc
Confidence 12333333322 568888875
No 256
>PRK12740 elongation factor G; Reviewed
Probab=98.76 E-value=9.1e-08 Score=81.21 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=51.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
+..+.||| |||+.+|...+..+++.+|++++|+|++........ ..+..+.. .++|+++++||+|+.
T Consensus 59 ~~~i~liD--tPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 59 GHKINLID--TPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred CEEEEEEE--CCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 45666776 999999988888999999999999999886554433 33344433 358999999999985
No 257
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=5.9e-08 Score=67.80 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=57.2
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 104 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 104 (163)
...++++|.+++|.|+.++.... ...+.+.+... ..++|+++|+||+|+.++..+ ......+.+.+....+.+||++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 34578999999999998864221 11222333322 235899999999998542211 1111222222223357899999
Q ss_pred CCCHHHHHHHHHHHH
Q 031249 105 AQNVEEAFIKTAAKI 119 (163)
Q Consensus 105 ~~~i~~lf~~l~~~~ 119 (163)
+.|++++++.+....
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999886643
No 258
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=6.5e-08 Score=68.59 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=65.4
Q ss_pred cch-hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 15 AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 15 ~G~-e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
||+ .+........+++||.+++|+|+.++...... .+++.+ .++|+++|+||+|+.+... .....++.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~ 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESK 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhc
Confidence 564 45555678889999999999999875432221 122222 2478999999999853211 11111222333
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 94 GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+..++.+||+++.|++++.+.+...+.
T Consensus 75 ~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 456899999999999999999887753
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.68 E-value=1.2e-07 Score=76.78 Aligned_cols=100 Identities=21% Similarity=0.162 Sum_probs=64.4
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCC--C
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH--R 78 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~--~ 78 (163)
.+..+||||+++|.......+..+|++++|+|++... .| ....+.+..+... ++| +|+++||+|... -
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccchh
Confidence 3444459999999887778889999999999998642 11 1223333333332 355 678999999532 0
Q ss_pred Cc----cCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 031249 79 RA----VSKEEGEQFAKENG-----LLFLEASARTAQNVEE 110 (163)
Q Consensus 79 ~~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 110 (163)
.+ ...+++..++...+ ++++++|+.+|+|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 11233444444444 4699999999999864
No 260
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.67 E-value=1.8e-07 Score=71.44 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=74.1
Q ss_pred Eeeecccchhhhhh----c---hhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCC
Q 031249 9 FWSLLQAGQESFRS----I---TRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 76 (163)
Q Consensus 9 l~d~Dt~G~e~~~~----~---~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~D~~ 76 (163)
+-.-|.||.-+-.+ | .-..+..++.++||+|++.. ..++++..++.++..+.. .+.|.++|+||+|++
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 44445788533222 2 23356789999999999987 667777777777655443 578999999999985
Q ss_pred CCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHH
Q 031249 77 HRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 77 ~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
+. ......++.+...-+ ++++||+.+++++++++.|-+
T Consensus 326 ea---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 326 EA---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hH---HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 32 112235566655544 999999999999999887743
No 261
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.66 E-value=2.8e-07 Score=69.93 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+..+.||| |||+.+|...+..+++.+|++++|+|+++...... ...++.+.. .++|+++++||+|.... ...
T Consensus 63 ~~~i~liD--tPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~--~~~ 134 (268)
T cd04170 63 GHKINLID--TPGYADFVGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERA--DFD 134 (268)
T ss_pred CEEEEEEE--CcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCC--CHH
Confidence 44566766 99999998888999999999999999987644432 233333433 35899999999998542 112
Q ss_pred HHHHHHHHHcCCeE
Q 031249 84 EEGEQFAKENGLLF 97 (163)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (163)
.....+...++.++
T Consensus 135 ~~~~~l~~~~~~~~ 148 (268)
T cd04170 135 KTLAALQEAFGRPV 148 (268)
T ss_pred HHHHHHHHHhCCCe
Confidence 33344444555543
No 262
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.66 E-value=1.8e-07 Score=72.70 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=36.1
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHH-HHHHHH
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFI-KTAAKI 119 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~-~l~~~~ 119 (163)
.+|+|+++||.|+..... ....+.... ...++.+||+.+.++.++.+ .+.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 479999999999743221 111222233 45699999999999999876 465554
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.65 E-value=1.5e-07 Score=80.11 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=62.3
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+..+.||| |||+.+|...+..+++.+|+++||+|+.+....... .++..+.. .++|+++++||+|+.... ..
T Consensus 74 ~~~i~liD--TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~ 145 (689)
T TIGR00484 74 GHRINIID--TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FL 145 (689)
T ss_pred CeEEEEEE--CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HH
Confidence 44566666 999999988889999999999999999876544432 33444443 348999999999986522 12
Q ss_pred HHHHHHHHHcCCe----EEEEcCCCC
Q 031249 84 EEGEQFAKENGLL----FLEASARTA 105 (163)
Q Consensus 84 ~~~~~~~~~~~~~----~~~~Sa~~~ 105 (163)
.....+...++.. .+++|+..+
T Consensus 146 ~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 146 RVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHHHHhCCCceeEEeccccCCC
Confidence 2233444444432 455565544
No 264
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=3.4e-07 Score=63.84 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=56.3
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 031249 32 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111 (163)
Q Consensus 32 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (163)
|.+++|+|+.++.+... .++.. ......++|+++|+||+|+.+...+ ......+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765543 23331 1111245899999999998542111 01111232333556899999999999999
Q ss_pred HHHHHHHHHHH
Q 031249 112 FIKTAAKILQN 122 (163)
Q Consensus 112 f~~l~~~~~~~ 122 (163)
++.+.+...+.
T Consensus 77 ~~~i~~~~~~~ 87 (155)
T cd01849 77 ESAFTKQTNSN 87 (155)
T ss_pred HHHHHHHhHHH
Confidence 99998765433
No 265
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.65 E-value=2.1e-07 Score=71.03 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=67.9
Q ss_pred eeecccchhh-hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249 10 WSLLQAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 88 (163)
Q Consensus 10 ~d~Dt~G~e~-~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~ 88 (163)
|. |||.. ........++.+|++++|+|+.++.+... ..+..+. .++|+++|+||+|+.+... ......
T Consensus 3 Wf---pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~ 71 (276)
T TIGR03596 3 WF---PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLK 71 (276)
T ss_pred cC---hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHH
Confidence 66 88754 34456778999999999999977644332 1122221 2479999999999853211 111111
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 89 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.....+.+++.+||+++.|++++.+.+.+.+...
T Consensus 72 ~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 72 YFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 2233456789999999999999998887776543
No 266
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.64 E-value=1.7e-07 Score=66.96 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=47.9
Q ss_pred cceeeEeeecccchhhhhhc-hhh--hccCCcEEEEEEECCC-hHHHHHHHHHHHHH-HHhc--CCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSI-TRS--YYRGAAGALLVYDITR-RETFNHLSSWLEDA-RQHA--NPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~-~~~--~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~l-~~~~--~~~~p~ilv~nK~D~~ 76 (163)
+..+.+.| +||+++.+.. +.. +...+.++|||+|.+. ...+.++.+++-.+ .... ...+|++|++||.|+.
T Consensus 48 ~~~~~lvD--~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 48 GKKLRLVD--IPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp GTCECEEE--ETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred CCEEEEEE--CCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 44666777 8999998874 443 5889999999999874 45566655544433 2222 2569999999999985
Q ss_pred C
Q 031249 77 H 77 (163)
Q Consensus 77 ~ 77 (163)
.
T Consensus 126 ~ 126 (181)
T PF09439_consen 126 T 126 (181)
T ss_dssp T
T ss_pred c
Confidence 5
No 267
>PLN03126 Elongation factor Tu; Provisional
Probab=98.63 E-value=2.1e-07 Score=75.95 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=65.4
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCCCCccC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~~~~~~v~ 82 (163)
+..+.|+| |||+++|.......+..+|++++|+|+.+...- ...+++..+... ++| +++++||+|+.+..+..
T Consensus 143 ~~~i~liD--tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~ 216 (478)
T PLN03126 143 NRHYAHVD--CPGHADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELL 216 (478)
T ss_pred CcEEEEEE--CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHH
Confidence 34555665 999999987667777899999999998865322 223444444433 467 77899999986532211
Q ss_pred ---HHHHHHHHHHc-----CCeEEEEcCCCCCCH
Q 031249 83 ---KEEGEQFAKEN-----GLLFLEASARTAQNV 108 (163)
Q Consensus 83 ---~~~~~~~~~~~-----~~~~~~~Sa~~~~~i 108 (163)
.+++..+++.. .++++++|+.++.++
T Consensus 217 ~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 217 ELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 12445555554 356999999887543
No 268
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.6e-07 Score=77.35 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=78.1
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC-C----C
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-H----R 78 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~-~----~ 78 (163)
+.++| |||+|.|..++.....-||.+|+|+|+... ++.+. ++.++.+ ++|+||.+||+|.. . +
T Consensus 542 ~lvId--tpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~r---ktpFivALNKiDRLYgwk~~p 612 (1064)
T KOG1144|consen 542 LLVID--TPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRMR---KTPFIVALNKIDRLYGWKSCP 612 (1064)
T ss_pred eEEec--CCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHhc---CCCeEEeehhhhhhcccccCC
Confidence 44444 999999999999999999999999999763 33333 3444443 48999999999952 1 0
Q ss_pred -CccC----------HH--------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 79 -RAVS----------KE--------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 79 -~~v~----------~~--------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
..+- .. .+.+|+. .| ++++++||..|+||-+|+-+|+......+.
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 0000 00 0111221 11 247899999999999999999999888876
Q ss_pred hccc
Q 031249 125 EGAL 128 (163)
Q Consensus 125 ~~~~ 128 (163)
++-.
T Consensus 692 ~kl~ 695 (1064)
T KOG1144|consen 692 EKLA 695 (1064)
T ss_pred HHHh
Confidence 6543
No 269
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.59 E-value=4e-07 Score=67.61 Aligned_cols=118 Identities=20% Similarity=0.322 Sum_probs=75.7
Q ss_pred ccceeeEeeecccchhhhhh-----chhhhccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFRS-----ITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~-----~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+...++||| .||+..+-. .....+++++++|||+|+.+.+ .+..+...++.+.+.. ++..+.++..|+|
T Consensus 46 ~~~~l~iwD--~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D 122 (232)
T PF04670_consen 46 SFLPLNIWD--CPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMD 122 (232)
T ss_dssp TSCEEEEEE--E-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CC
T ss_pred CCcEEEEEE--cCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecc
Confidence 456889999 699865533 3577899999999999998433 3444555666666665 7899999999999
Q ss_pred CCCCCc--cC----HHHHHHHHHHcC---CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 75 LAHRRA--VS----KEEGEQFAKENG---LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 75 ~~~~~~--v~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
+..+.. .. .+++...+...+ +.++.+|.-+ ..+.+.|..++..++.+..
T Consensus 123 ~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 123 LLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp CS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 854211 11 122334444555 6688888877 5777777777776665443
No 270
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.56 E-value=2.7e-07 Score=63.36 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=51.9
Q ss_pred hhhccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 25 RSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
...++++|++++|+|+.++.+.. .+..++... . .++|+++|+||+|+.++.. ........+..+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 45678999999999998876544 233333322 1 4589999999999854221 22333445555678999999
Q ss_pred CCCCC
Q 031249 103 RTAQN 107 (163)
Q Consensus 103 ~~~~~ 107 (163)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 88653
No 271
>PRK12739 elongation factor G; Reviewed
Probab=98.55 E-value=1.1e-06 Score=75.06 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=50.1
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+..+.|+| |||+.+|...+...++.+|++|+|+|+.+...-.. ...+..+.. .++|+++++||+|+..
T Consensus 72 ~~~i~liD--TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 72 GHRINIID--TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CEEEEEEc--CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 33455555 99999998888999999999999999987543322 233444433 3489999999999863
No 272
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.55 E-value=3.7e-07 Score=75.39 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=50.1
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
++..+.||| |||+.+|......+++.+|++|+|+|+++... .....+++.... .++|+++++||+|+..
T Consensus 78 ~~~~inliD--TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 78 RDCLVNLLD--TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCeEEEEEE--CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 345566666 99999998877778999999999999987421 122334443333 3589999999999853
No 273
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.50 E-value=8.8e-07 Score=68.69 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=66.0
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC---
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS--SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--- 82 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--- 82 (163)
.|+.-||||+|+|....-.-...||.+|+++|+-..- .+... .++..+.. -..++|..||+||.+=.+--
T Consensus 87 kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 87 KFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred eEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHHHHH
Confidence 3445569999999987777888999999999985431 11111 12333322 25788889999997632211
Q ss_pred -HHHHHHHHHHcCCe---EEEEcCCCCCCHH
Q 031249 83 -KEEGEQFAKENGLL---FLEASARTAQNVE 109 (163)
Q Consensus 83 -~~~~~~~~~~~~~~---~~~~Sa~~~~~i~ 109 (163)
..+...++...++. ++++||..|+||-
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 23345577777764 9999999999976
No 274
>PRK13796 GTPase YqeH; Provisional
Probab=98.50 E-value=1.4e-06 Score=69.03 Aligned_cols=93 Identities=26% Similarity=0.369 Sum_probs=62.8
Q ss_pred hhhhhchhhhccCCc-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHH----HHH
Q 031249 18 ESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF----AKE 92 (163)
Q Consensus 18 e~~~~~~~~~~~~ad-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~----~~~ 92 (163)
+.|..+.... ..+| .+++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+.. +....+++..+ ++.
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence 4455544444 4445 999999988743 23445554433 2579999999999964 33444444434 455
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 031249 93 NGL---LFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 93 ~~~---~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 565 48999999999999999998654
No 275
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.49 E-value=8.2e-07 Score=68.11 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=68.4
Q ss_pred eeecccchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249 10 WSLLQAGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 88 (163)
Q Consensus 10 ~d~Dt~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~ 88 (163)
|. |||..- .......++.+|++|+|+|+.++.+... .++..+.. ++|+++|.||+|+.+... .+....
T Consensus 6 wf---pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~ 74 (287)
T PRK09563 6 WF---PGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIE 74 (287)
T ss_pred Cc---HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHH
Confidence 76 887543 3456778899999999999977644332 12222221 479999999999843210 111122
Q ss_pred HHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 89 FAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.....+.+++.+|++++.|++++.+.+...+...
T Consensus 75 ~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 75 YFEEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 2233456789999999999999998887776543
No 276
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.48 E-value=1.3e-06 Score=66.69 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=70.8
Q ss_pred cceeeEeeecccch------hhhhh------chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 031249 4 SQESFFWSLLQAGQ------ESFRS------ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 71 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~------e~~~~------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~n 71 (163)
...-|+..+||||. .++.. --+..+.+||++++|+|+++....-. ...+..+.++. .+|-+||.|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmn 193 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMN 193 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeecc
Confidence 34567777779993 12111 12446779999999999997332211 22334444443 489999999
Q ss_pred CCCCCCCCccCH----------------HHHHHHHHHc------------CCe-EEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 72 KCDLAHRRAVSK----------------EEGEQFAKEN------------GLL-FLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 72 K~D~~~~~~v~~----------------~~~~~~~~~~------------~~~-~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
|.|....+.+.. +...++.... +++ +|++||++|.||+++-++|+.+..
T Consensus 194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 999765432211 1111121111 122 899999999999999999987654
No 277
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.45 E-value=2.3e-06 Score=62.05 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=66.5
Q ss_pred eeeEeeecccchhhhhhch-----hhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSIT-----RSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~-----~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
.+.+|| |||........ ...+.++|.+++|.+. .|.... .+++.+.+. +.|+++|+||+|+....
T Consensus 53 ~l~l~D--tpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 53 NVTLWD--LPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CceEEe--CCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhh
Confidence 567777 89964332222 2336789999998542 233333 456666554 47999999999984311
Q ss_pred c-----------cCHHHHHH----HHHHcC--C-eEEEEcCC--CCCCHHHHHHHHHHHHHHHHh
Q 031249 80 A-----------VSKEEGEQ----FAKENG--L-LFLEASAR--TAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 80 ~-----------v~~~~~~~----~~~~~~--~-~~~~~Sa~--~~~~i~~lf~~l~~~~~~~~~ 124 (163)
. ...++..+ .....+ . ++|.+|+. .+.++..+.+.+...+-+...
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 1 00112222 222222 2 48999998 568888888888887776543
No 278
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.44 E-value=1.5e-06 Score=67.12 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=78.1
Q ss_pred eeeEeeecccchhh----hhhchhh---hccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcC--CCCeEEEEeeCC
Q 031249 6 ESFFWSLLQAGQES----FRSITRS---YYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKC 73 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~----~~~~~~~---~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~ilv~nK~ 73 (163)
.|.+=| .||.-. -..+-.. .+..+.++++|+|++..+ ..++...+..++.++.. .++|.+||+||+
T Consensus 208 sfv~AD--IPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKi 285 (369)
T COG0536 208 SFVVAD--IPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKI 285 (369)
T ss_pred cEEEec--CcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEecc
Confidence 355555 687422 1223333 456799999999998644 46667777777766653 468999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 74 DLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
|++...+........+.+..+.. .+.+||.++.|++++...+.+.+.....
T Consensus 286 D~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 286 DLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETKA 337 (369)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhhh
Confidence 97553332223333344444444 2229999999999999999888887753
No 279
>PRK01889 GTPase RsgA; Reviewed
Probab=98.40 E-value=1.6e-06 Score=68.45 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=59.5
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ 106 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~ 106 (163)
+.++|.+++|++++..-....+..++..+... ++|.+||+||+|+.++. .+....+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 58999999999997554555566666666554 47779999999996531 112222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 031249 107 NVEEAFIKTA 116 (163)
Q Consensus 107 ~i~~lf~~l~ 116 (163)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888773
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.37 E-value=1.8e-06 Score=69.20 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=73.4
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
+++..+.|.| |||+..|..-.+..+.-.|++++++|+....-- .....++...+ .+.+.|||.||+|.+..+..
T Consensus 65 ~~~~~INIvD--TPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 65 YNGTRINIVD--TPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALA---LGLKPIVVINKIDRPDARPD 138 (603)
T ss_pred cCCeEEEEec--CCCcCCccchhhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHH---cCCCcEEEEeCCCCCCCCHH
Confidence 4565666666 999999999999999999999999999874311 12233333333 34677899999998763211
Q ss_pred C-HHHHHHHH-------HHcCCeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 031249 82 S-KEEGEQFA-------KENGLLFLEASARTAQ----------NVEEAFIKTAAKI 119 (163)
Q Consensus 82 ~-~~~~~~~~-------~~~~~~~~~~Sa~~~~----------~i~~lf~~l~~~~ 119 (163)
. .++...+. .+..++++..|+++|. +...+|+.+++++
T Consensus 139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 0 12222232 2345788888988863 4556666666554
No 281
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.2e-06 Score=67.29 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=73.4
Q ss_pred eeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--cCHHHHH
Q 031249 10 WSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGE 87 (163)
Q Consensus 10 ~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--v~~~~~~ 87 (163)
-.+|.||+|-.-+..-.-..=.|++++|++++.+..--+..+.+-.+.-. .-+.++++-||+|+....+ ...+++.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHHH
Confidence 34459999986554444445579999999988643322233333333221 1257899999999976322 2234555
Q ss_pred HHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 88 QFAKEN---GLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 88 ~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
+|.+.. +.+++++||..+.||+.+++.|.+.+-.-
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 565543 45799999999999999999988776543
No 282
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=8.2e-06 Score=59.25 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=53.4
Q ss_pred ccceeeEeeecccchhhhhhchhhhcc---CCcEEEEEEECC-ChHHHHHHHH-HHHHHHHhc--CCCCeEEEEeeCCCC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYR---GAAGALLVYDIT-RRETFNHLSS-WLEDARQHA--NPNMSIMLVGNKCDL 75 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~---~ad~~i~v~d~~-~~~s~~~~~~-~~~~l~~~~--~~~~p~ilv~nK~D~ 75 (163)
+...+.|.| .||+.+.+.....+++ .+-+++||+|.. ......+..+ ++.-+.... ...+|+++..||.|+
T Consensus 80 gs~~~~LVD--~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 80 GSENVTLVD--LPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred cCcceEEEe--CCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 345567788 7999999988888887 799999999964 3444555544 444444442 356899999999998
Q ss_pred CC
Q 031249 76 AH 77 (163)
Q Consensus 76 ~~ 77 (163)
..
T Consensus 158 ~t 159 (238)
T KOG0090|consen 158 FT 159 (238)
T ss_pred hh
Confidence 64
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.30 E-value=3.3e-06 Score=61.46 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=53.7
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE--EEEeeCCCCCCCCccCHHHHHHHHHH--cCCeEEEEcCCCCC
Q 031249 31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI--MLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQ 106 (163)
Q Consensus 31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~--ilv~nK~D~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~ 106 (163)
+|.+|.|+|+.+.++... .+.. .+.. ++++||+|+........+.....++. .+.+++++|+++|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 688999999987655321 1111 1233 89999999864212223344444443 45679999999999
Q ss_pred CHHHHHHHHHHHH
Q 031249 107 NVEEAFIKTAAKI 119 (163)
Q Consensus 107 ~i~~lf~~l~~~~ 119 (163)
|++++|+++.++.
T Consensus 183 gi~el~~~i~~~~ 195 (199)
T TIGR00101 183 GLDTVIDWIEHYA 195 (199)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998654
No 284
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.29 E-value=5.9e-06 Score=64.57 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=82.4
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHH-------HHHHHHHHHHHHHhcC----CCCeEEEEe
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHAN----PNMSIMLVG 70 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~~----~~~p~ilv~ 70 (163)
+.+.++.+.| .+||.--+..|.+++.+++++|||.+++..+. .+.+.+-++.+....+ .++++||++
T Consensus 192 ~k~~~f~~~D--vGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 192 IKGLKFRMFD--VGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred eCCCceEEEe--CCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 4567788888 89999999999999999999999999876332 2223332333322222 469999999
Q ss_pred eCCCCCCCCc---------------cCHHHHHHHHHH--------c--CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 71 NKCDLAHRRA---------------VSKEEGEQFAKE--------N--GLLFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 71 nK~D~~~~~~---------------v~~~~~~~~~~~--------~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
||.|+-+++. -..+++..+... . .+-+..++|.+..+|..+|......++....+
T Consensus 270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999843211 123333332211 1 12256668999999999999999988876544
No 285
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.27 E-value=1e-05 Score=58.27 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=72.5
Q ss_pred eeEeeecccc----------hhhhhhchhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 7 SFFWSLLQAG----------QESFRSITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 7 ~~l~d~Dt~G----------~e~~~~~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
+.|.| .|| .+++..++..|++. -.++++++|+.....-.+. +.++.+.+. ++|++|++||+
T Consensus 72 ~~lVD--lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~ 145 (200)
T COG0218 72 LRLVD--LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKA 145 (200)
T ss_pred EEEEe--CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEcc
Confidence 55666 688 57778888888864 6788888898765433332 455555553 59999999999
Q ss_pred CCCCCCccCHHHHHHHHHHcC----Ce--EEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 74 DLAHRRAVSKEEGEQFAKENG----LL--FLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 74 D~~~~~~v~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
|.....+.. ......++... .. ++..|+.++.|++++-..|.+.+..
T Consensus 146 DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 146 DKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 986643321 22233333322 22 7788999999999998888776643
No 286
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.26 E-value=1e-05 Score=62.31 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=71.8
Q ss_pred cceeeEeeecccch-----hhhhhc----hhhhccCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 4 SQESFFWSLLQAGQ-----ESFRSI----TRSYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~-----e~~~~~----~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
..++|+.| |||. +....+ +...-+=+++++|+||.+... +.+.-..+++++...- ..|+++|.||
T Consensus 214 ~~R~QvID--TPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK 289 (346)
T COG1084 214 YLRIQVID--TPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINK 289 (346)
T ss_pred CceEEEec--CCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEec
Confidence 45788888 9994 111111 111223378999999987644 4555556777777665 3899999999
Q ss_pred CCCCCCCccCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 73 CDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 73 ~D~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
.|..+... .+++......- +.....+++..+.+++.+-..+.....+
T Consensus 290 ~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 290 IDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 99864333 23333333333 4447788888888888777777666443
No 287
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=1.5e-05 Score=60.95 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=71.3
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+|...+.+.-+.+.|-+++|+++.+++ +...+..++-..... ++..+|++||+|+.++.....++........+++
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~ 143 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP 143 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCee
Confidence 566667777777889999999888765 455555665555443 4666788999999764333223455566778999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH
Q 031249 97 FLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
++.+|++++.+++++...+...
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EEEecCcCcccHHHHHHHhcCC
Confidence 9999999999999888877543
No 288
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.3e-05 Score=66.82 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=74.5
Q ss_pred ccceeeEeeecccchhhhh------hchhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 3 FSQESFFWSLLQAGQESFR------SITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~------~~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+..+++.| .||.=... ...+.|+. +.|+++-|.|+++.+--- ..--++.+ -+.|++++.|+.|
T Consensus 48 ~~~~i~ivD--LPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnL---yltlQLlE---~g~p~ilaLNm~D 119 (653)
T COG0370 48 KGHEIEIVD--LPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNL---YLTLQLLE---LGIPMILALNMID 119 (653)
T ss_pred cCceEEEEe--CCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHH---HHHHHHHH---cCCCeEEEeccHh
Confidence 456678888 69842221 13344443 579999999999864211 22223333 3589999999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 117 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (163)
.-+++.+ .-+..++.+..|+|+++++|++|.|++++...+.+
T Consensus 120 ~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 120 EAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred hHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 8665444 34556678888999999999999999999988865
No 289
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=7e-06 Score=64.91 Aligned_cols=104 Identities=21% Similarity=0.118 Sum_probs=67.4
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHHH--HHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~--~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
..+-.+|+||+..|-.-.-.-+..||++|||+|+.+.+ .|..-.+..+ .+.... .-..+|++.||.|+++=++-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHH
Confidence 34556669999999887777888999999999998753 2211112111 122222 23568888999998752221
Q ss_pred CHH----HHHHHHHHcCC-----eEEEEcCCCCCCHHHH
Q 031249 82 SKE----EGEQFAKENGL-----LFLEASARTAQNVEEA 111 (163)
Q Consensus 82 ~~~----~~~~~~~~~~~-----~~~~~Sa~~~~~i~~l 111 (163)
-.+ +...+.+..|+ +|+++|+..|+|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 122 23335555554 4999999999997653
No 290
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.16 E-value=4.5e-05 Score=58.77 Aligned_cols=50 Identities=26% Similarity=0.189 Sum_probs=39.2
Q ss_pred CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+|.++|.||+|+.. .++...+.+.. .++.+||+.+.|++++.+.|...+-
T Consensus 240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 79999999999843 45555555444 7899999999999999998877653
No 291
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.14 E-value=2.8e-06 Score=63.51 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred eeeEeeecccchhhhhhchhhhc--------cCCcEEEEEEECC---ChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYY--------RGAAGALLVYDIT---RRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~--------~~ad~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+.|+| ||||.++...|.... ...-++++++|+. ++..|-. .++-.+......+.|.|.|.||+|
T Consensus 92 ~y~l~D--tPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFD--TPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE----SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GG
T ss_pred cEEEEe--CCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccC
Confidence 455666 999988877665544 5667899999975 3434432 222222111113589999999999
Q ss_pred CCCCC--cc-----------------CH---HHHHHHHHHcCC--eEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 75 LAHRR--AV-----------------SK---EEGEQFAKENGL--LFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 75 ~~~~~--~v-----------------~~---~~~~~~~~~~~~--~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+.+.. .. .. .....+...++. .++++|+.+++++.+++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 96521 00 00 011111222232 599999999999999998886543
No 292
>PRK00007 elongation factor G; Reviewed
Probab=98.13 E-value=2e-05 Score=67.33 Aligned_cols=92 Identities=17% Similarity=0.075 Sum_probs=59.3
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHH
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 87 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~ 87 (163)
++..+||||+.+|..-....++.+|++++|+|+...-.... ...+..+.+. ++|+++++||+|+.+.. ......
T Consensus 76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~~~ 149 (693)
T PRK00007 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD--FYRVVE 149 (693)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC--HHHHHH
Confidence 44445599999887767778899999999999876543333 2334444443 47999999999986532 223333
Q ss_pred HHHHHcCCe----EEEEcCCCC
Q 031249 88 QFAKENGLL----FLEASARTA 105 (163)
Q Consensus 88 ~~~~~~~~~----~~~~Sa~~~ 105 (163)
.+...++.. .+++|+.++
T Consensus 150 ~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 150 QIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHhCCCeeeEEecCccCCc
Confidence 444444432 455666554
No 293
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.11 E-value=1.9e-05 Score=63.09 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=77.0
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChH----------HHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
.+..+.++| ++|+...+..|..++.+++++|||+++++-+ .+.+...+++.+..... ...|++|++|
T Consensus 234 ~~~~~~~~D--vGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ln 311 (389)
T PF00503_consen 234 GSRKFRLID--VGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLN 311 (389)
T ss_dssp TTEEEEEEE--ETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred cccccceec--CCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeee
Confidence 456778888 7999999999999999999999999986421 23444455555544332 4699999999
Q ss_pred CCCCCC-----CC-----------c--cCHHHHHHHHHH-c-----------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 72 KCDLAH-----RR-----------A--VSKEEGEQFAKE-N-----------GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 72 K~D~~~-----~~-----------~--v~~~~~~~~~~~-~-----------~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
|.|+-. .. . -..+.+..+... + .+.+..++|.+..++..+|+.+...|
T Consensus 312 K~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 312 KIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp -HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 999621 11 0 123444443322 1 12356889999899999998886643
No 294
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.11 E-value=1.3e-05 Score=61.19 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=45.7
Q ss_pred hhcc--CCcEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc--cCHHHHHHHHHHcCCeEEEE
Q 031249 26 SYYR--GAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEA 100 (163)
Q Consensus 26 ~~~~--~ad~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~--v~~~~~~~~~~~~~~~~~~~ 100 (163)
..+. .+|+++|+++.+.. .+... ...++.+.. .+|+++|+||+|+....+ .....+.+.+..++++++..
T Consensus 108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~ 182 (276)
T cd01850 108 PRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKF 182 (276)
T ss_pred ccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECC
Confidence 3444 47777777776641 12111 234444432 489999999999865322 23455667788889998877
Q ss_pred cCCC
Q 031249 101 SART 104 (163)
Q Consensus 101 Sa~~ 104 (163)
....
T Consensus 183 ~~~~ 186 (276)
T cd01850 183 PEDE 186 (276)
T ss_pred CCCc
Confidence 6543
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.11 E-value=2.8e-05 Score=60.79 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=69.5
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--CHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKE 84 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~~~ 84 (163)
+-+..+||+|...-.. .....+|.+++|.+....+....+. ..+.+ ..-++|+||.|+.+.... ...
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 3444455999653322 2466799999997755454444332 21222 223899999998653211 112
Q ss_pred HHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249 85 EGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130 (163)
Q Consensus 85 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~ 130 (163)
+....... +..+++.+||.++.||+++++.+.+++....+....+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 22222221 22579999999999999999999988776555554443
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.10 E-value=2.4e-05 Score=57.14 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQN 107 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~ 107 (163)
..+..+.|+|+.+.+.... .. ... ...|.++++||+|+.+.......+.....+.. ..+++++||+++.|
T Consensus 123 ~~~~~i~Vvd~~~~d~~~~--~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~g 194 (207)
T TIGR00073 123 GEHMRVVLLSVTEGDDKPL--KY-PGM-----FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEG 194 (207)
T ss_pred ccCeEEEEEecCcccchhh--hh-HhH-----HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 3456677888775432111 11 111 13578999999999653222233444444443 37799999999999
Q ss_pred HHHHHHHHHHH
Q 031249 108 VEEAFIKTAAK 118 (163)
Q Consensus 108 i~~lf~~l~~~ 118 (163)
++++|+++.++
T Consensus 195 v~~l~~~i~~~ 205 (207)
T TIGR00073 195 LDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHh
Confidence 99999999774
No 297
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=7.3e-06 Score=66.02 Aligned_cols=120 Identities=19% Similarity=0.156 Sum_probs=76.3
Q ss_pred CccceeeEeeecccchhhh-hh--------chhhhccCCcEEEEEEEC--CChHHHHHHHHHHHHHHHhc------CCCC
Q 031249 2 FFSQESFFWSLLQAGQESF-RS--------ITRSYYRGAAGALLVYDI--TRRETFNHLSSWLEDARQHA------NPNM 64 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~-~~--------~~~~~~~~ad~~i~v~d~--~~~~s~~~~~~~~~~l~~~~------~~~~ 64 (163)
++|.++.|.| |||..+- .. --...+..||.+++|+|+ .+..+-..+...++....-. ....
T Consensus 313 ~~G~~v~L~D--TAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~ 390 (531)
T KOG1191|consen 313 VNGVPVRLSD--TAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQ 390 (531)
T ss_pred cCCeEEEEEe--ccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEecccccc
Confidence 5788888888 9997551 11 124467899999999999 33333333334444432211 1247
Q ss_pred eEEEEeeCCCCCCC-CccCHHHHHHHHHHcC---Ce-EEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 65 SIMLVGNKCDLAHR-RAVSKEEGEQFAKENG---LL-FLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 65 p~ilv~nK~D~~~~-~~v~~~~~~~~~~~~~---~~-~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
|++++.||.|+..+ .+.+ .....+....+ ++ ..++|++++++++.+.+.+.+.+.....
T Consensus 391 ~~i~~~nk~D~~s~~~~~~-~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 391 RIILVANKSDLVSKIPEMT-KIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEechhhccCcccccc-CCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 99999999998653 1221 11111111122 33 5669999999999999999998887766
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.09 E-value=2.4e-05 Score=67.21 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=49.6
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
...++..+||||+.+|.......++.+|++|+|+|+...-... ....+....+. +.|+++++||+|..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence 3566666779999999888888999999999999988653222 22333333332 36789999999974
No 299
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.09 E-value=5.4e-06 Score=71.07 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=47.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
..++..+||||+.+|.......++.+|++|+|+|+.+....+. ...+..+.. .+.|+++++||+|..
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhcc
Confidence 4444445599999998888899999999999999887432222 122233322 347889999999974
No 300
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.07 E-value=3.5e-05 Score=61.69 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHH-HHHHHHH
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE-AFIKTAA 117 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-lf~~l~~ 117 (163)
.+|+++|+||.|+.... .....+....+..++.+||+.+.++.+ +.+.+++
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~ 268 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLID 268 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence 48999999999974311 112222222344589999999999888 4444443
No 301
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.2e-05 Score=61.19 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=58.7
Q ss_pred ecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCC-eEEEEeeCCCCCCCCccC---HH
Q 031249 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRAVS---KE 84 (163)
Q Consensus 12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~-p~ilv~nK~D~~~~~~v~---~~ 84 (163)
+|.||+..|-...-.-...+|+.|+|++++|.. +.+.+ -..++ -++ .++++.||+|+.++.++. ..
T Consensus 80 VDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq---vGvp~ivvflnK~Dmvdd~ellelVem 152 (394)
T COG0050 80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ---VGVPYIVVFLNKVDMVDDEELLELVEM 152 (394)
T ss_pred ccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh---cCCcEEEEEEecccccCcHHHHHHHHH
Confidence 568999999876666677899999999999853 33321 11222 345 456779999998755433 24
Q ss_pred HHHHHHHHcCCe-----EEEEcCCC
Q 031249 85 EGEQFAKENGLL-----FLEASART 104 (163)
Q Consensus 85 ~~~~~~~~~~~~-----~~~~Sa~~ 104 (163)
+.+.++..++++ ++.-||..
T Consensus 153 EvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 153 EVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHHHHcCCCCCCcceeechhhh
Confidence 567788888875 66666644
No 302
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=7.1e-05 Score=59.71 Aligned_cols=108 Identities=17% Similarity=0.057 Sum_probs=71.1
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHH
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 88 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~ 88 (163)
+-.+|+||+++|-.-.-.-+...|.++||++.++.-.-+. .+.+..+.- . .-...++|+||.|..++.++ .+...+
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qt-gEhL~iLdl-l-gi~~giivltk~D~~d~~r~-e~~i~~ 127 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQT-GEHLLILDL-L-GIKNGIIVLTKADRVDEARI-EQKIKQ 127 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhh-HHHHHHHHh-c-CCCceEEEEeccccccHHHH-HHHHHH
Confidence 3445599999998766677778999999999965322221 112222221 1 12345999999998764322 233333
Q ss_pred HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 89 FAKEN---GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 89 ~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
+.... ..+++.+|+++++||+++-+.|....-
T Consensus 128 Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 128 ILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 33333 355899999999999999999987764
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.98 E-value=3e-05 Score=59.92 Aligned_cols=103 Identities=14% Similarity=-0.032 Sum_probs=61.8
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH--H
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--E 84 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~--~ 84 (163)
+-+..+||+|.-.-. ...+..+|.++++-.... -.++..+...+. .+|.++++||+|+........ .
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence 334445599853221 235677899998865433 234433333332 367899999999864321110 0
Q ss_pred HH----HHHHH---HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 85 EG----EQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 85 ~~----~~~~~---~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.. ..+.. .+..+++++||+++.|++++++++.+...
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 11111 12245899999999999999999988744
No 304
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.96 E-value=6.4e-05 Score=49.61 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=58.0
Q ss_pred hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEE
Q 031249 21 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 100 (163)
Q Consensus 21 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~ 100 (163)
..+...+++.++++++||+.++.+++..+ |...+......+.|.++++||.|+.+...+..++.. .++++
T Consensus 37 ~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~ 106 (124)
T smart00010 37 DVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAET 106 (124)
T ss_pred hhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHH
Confidence 33456678899999999999999998765 777776655567899999999998543334433333 34567
Q ss_pred cCCCCCCHH
Q 031249 101 SARTAQNVE 109 (163)
Q Consensus 101 Sa~~~~~i~ 109 (163)
|++++.++.
T Consensus 107 s~~~~~~~~ 115 (124)
T smart00010 107 SAKTPEEGE 115 (124)
T ss_pred hCCCcchhh
Confidence 888888874
No 305
>PTZ00416 elongation factor 2; Provisional
Probab=97.92 E-value=2.4e-05 Score=68.10 Aligned_cols=67 Identities=25% Similarity=0.228 Sum_probs=50.5
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
...+..+||||+.+|..-....++.+|++|+|+|+...-.... ...++.+... ++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence 3455566699999998888888999999999999987533332 3344555443 48999999999985
No 306
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.85 E-value=4.1e-05 Score=66.77 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=50.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
...+..+||||+..|..-....++.+|++|+|+|+...-.... ...++.+.. .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence 4455566699999998888888899999999999987643332 233444444 348999999999985
No 307
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.84 E-value=7.3e-05 Score=61.45 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=66.1
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCC
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQN 107 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 107 (163)
..+|++.++||.+++.+|.-+...++.-... ...|++.|++|.|+.+..+...-.-.+++.+++++ .+.+|.+....
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 6799999999999999999877766555433 56999999999999764322222227799999987 56667765444
Q ss_pred HHHHHHHHHHHHH
Q 031249 108 VEEAFIKTAAKIL 120 (163)
Q Consensus 108 i~~lf~~l~~~~~ 120 (163)
.++|..|+....
T Consensus 572 -~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 572 -NELFIKLATMAQ 583 (625)
T ss_pred -chHHHHHHHhhh
Confidence 788888876653
No 308
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.82 E-value=0.00047 Score=49.79 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=61.9
Q ss_pred cceeeEeeecccchhhhh-------h-c---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEe
Q 031249 4 SQESFFWSLLQAGQESFR-------S-I---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP--NMSIMLVG 70 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~-------~-~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ilv~ 70 (163)
+..+.++| |||-.... . + +.....+.|++|||.++.+ .+-. ....++.+.+.... -.+++++.
T Consensus 48 ~~~i~viD--TPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 48 GRRVNVID--TPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred CeEEEEEE--CcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEE
Confidence 44455555 99953321 1 1 2223468999999999876 2221 22344444443221 25789999
Q ss_pred eCCCCCCCCccC------HHHHHHHHHHcCCeEEEEcC-----CCCCCHHHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVS------KEEGEQFAKENGLLFLEASA-----RTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 71 nK~D~~~~~~v~------~~~~~~~~~~~~~~~~~~Sa-----~~~~~i~~lf~~l~~~~~~ 121 (163)
|+.|...+..+. ......+.+..+-.++..+. ..+.++.++++.+-+.+.+
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 999975533211 12344455555555555544 3455666666665544443
No 309
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.77 E-value=0.00019 Score=47.26 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=38.4
Q ss_pred cceeeEeeecccchhh----------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 4 SQESFFWSLLQAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
+..+.|+| |||... +....+ .+..+|+++||+|..+... +....+++.+. ...|+++|+||
T Consensus 46 ~~~~~~vD--tpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVD--TPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEE--SSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred eeeEEEEe--CCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 44556666 999421 222333 3489999999999877322 22334445553 35899999998
No 310
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.77 E-value=0.00018 Score=54.40 Aligned_cols=115 Identities=14% Similarity=0.171 Sum_probs=76.7
Q ss_pred CccceeeEeeecccchhh-------hhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 2 FFSQESFFWSLLQAGQES-------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~-------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+.+..+.||| |||-++ ++.+...++...|.++++.++.|+.---+. .++..+.... .+.|++++.|..|
T Consensus 84 ~~~~~l~lwD--tPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D 159 (296)
T COG3596 84 YDGENLVLWD--TPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQAD 159 (296)
T ss_pred ccccceEEec--CCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhh
Confidence 4567888999 899544 667788899999999999999887432222 3444444333 3479999999999
Q ss_pred CCCCC-------ccCHH--------HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRR-------AVSKE--------EGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~-------~v~~~--------~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
...+- ..+.. ++....+... .+++.++...+-|++.+...+++.+-
T Consensus 160 ~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 160 RAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 64321 01111 1221111111 35788889999999999999988765
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00036 Score=54.49 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=69.3
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCC-Cc
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR-RA 80 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~-~~ 80 (163)
.++++|+-.+|.||+...-..+-.-..-.|..++|+|+.....-+.++ -.+.++.. ...++|+||+|...+ +.
T Consensus 66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQR 140 (522)
T ss_pred ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhh
Confidence 356778888889998775544444555678899999987643222222 23444433 357888888886432 11
Q ss_pred -cC-HHHHHHHHHHc---C----CeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 031249 81 -VS-KEEGEQFAKEN---G----LLFLEASARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 81 -v~-~~~~~~~~~~~---~----~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
-. .+...++.+.. + .+++++||..|.--++.+.+|...+.+++-
T Consensus 141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 11 12223333322 2 579999999995555555555555554443
No 312
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.74 E-value=0.00014 Score=54.70 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=52.9
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEeeC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHAN-PNMSIMLVGNK 72 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK 72 (163)
-++|+++| .+||..-+..|-+.+.+.-++|||..++.- ..++....+++.++.++. ..+.+||++||
T Consensus 201 kv~FhMfD--VGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 201 KVNFHMFD--VGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNK 278 (379)
T ss_pred ccceeeec--cCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecH
Confidence 45788888 799999999999999999999999987641 123333445555554433 34789999999
Q ss_pred CCCC
Q 031249 73 CDLA 76 (163)
Q Consensus 73 ~D~~ 76 (163)
.|+.
T Consensus 279 qDll 282 (379)
T KOG0099|consen 279 QDLL 282 (379)
T ss_pred HHHH
Confidence 9974
No 313
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.68 E-value=0.00039 Score=56.57 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=69.5
Q ss_pred CcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH---HHHHHHcCCeEEEEcCCCC
Q 031249 31 AAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG---EQFAKENGLLFLEASARTA 105 (163)
Q Consensus 31 ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~ 105 (163)
--+++|+.|++-.. |..+-..++..++-.- .++|+|+|+||+|+.....+..+.. ..+....++++++.|+.+.
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 45788889988644 4444444555554433 5689999999999876666665543 3444555688999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcc
Q 031249 106 QNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
+||.++-.+....++...-+..
T Consensus 327 egVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 327 EGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred hceeeHHHHHHHHHHHHHHHHH
Confidence 9999999988888877765544
No 314
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=8.9e-05 Score=60.93 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=65.6
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChH---HHHHHHHHH--HHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWL--EDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~--~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
.+..+|+||+..|.+-.-.-...||.+++|+|++... .|+...+.. ..+.+..+ -..++|++||.|+.+=.+--
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHHH
Confidence 3444569999999887777788999999999997532 333211211 22233332 35789999999986522211
Q ss_pred HH----HHHHHH-HHcCC-----eEEEEcCCCCCCHHHH
Q 031249 83 KE----EGEQFA-KENGL-----LFLEASARTAQNVEEA 111 (163)
Q Consensus 83 ~~----~~~~~~-~~~~~-----~~~~~Sa~~~~~i~~l 111 (163)
.+ ....++ +..|+ .|++||+..|+|+...
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 22 233445 44454 5999999999986533
No 315
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.60 E-value=0.00036 Score=40.18 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=28.8
Q ss_pred cCCcEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 29 RGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+=.++++|++|++... +.++-..++++++..- .++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3468999999998654 4555556777777654 5799999999998
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.58 E-value=0.00028 Score=52.81 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=43.4
Q ss_pred eeEeeecccchh-------------hhhhchhhhccC-CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 7 SFFWSLLQAGQE-------------SFRSITRSYYRG-AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 7 ~~l~d~Dt~G~e-------------~~~~~~~~~~~~-ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
..|..+||||-. ....+...|+++ .+.+++|+|+...-+-.+...+.+.+.. ...|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 455556699953 123367778884 5699999988653222232333344433 45899999999
Q ss_pred CCCCC
Q 031249 73 CDLAH 77 (163)
Q Consensus 73 ~D~~~ 77 (163)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99865
No 317
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00011 Score=62.46 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=50.7
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
..|..+||||+=+|..-....++-+|++++|+|+...-..+ ....+++..++ ++|.+++.||.|..
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~~---~vp~i~fiNKmDR~ 141 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADKY---GVPRILFVNKMDRL 141 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhhc---CCCeEEEEECcccc
Confidence 45555559999999999999999999999999998753333 23344445444 48999999999974
No 318
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00053 Score=53.44 Aligned_cols=88 Identities=23% Similarity=0.140 Sum_probs=57.5
Q ss_pred ecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC---HHHHHH
Q 031249 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQ 88 (163)
Q Consensus 12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~---~~~~~~ 88 (163)
+|.||+.+|-...-.-....|++|+|+.++|..--+ ..+.+-..++.. -..++++.||.|++.+.+.. +-++++
T Consensus 122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RE 198 (449)
T KOG0460|consen 122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRE 198 (449)
T ss_pred CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHH
Confidence 468999999876666677899999999999953221 222222233322 13567779999997543321 235678
Q ss_pred HHHHcCCe-----EEEEcC
Q 031249 89 FAKENGLL-----FLEASA 102 (163)
Q Consensus 89 ~~~~~~~~-----~~~~Sa 102 (163)
++.++|++ ++.=||
T Consensus 199 lLse~gf~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSA 217 (449)
T ss_pred HHHHcCCCCCCCCeeecch
Confidence 88888864 665554
No 319
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.53 E-value=0.00089 Score=49.57 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=52.4
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCCCCccCHHH-
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVSKEE- 85 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ilv~nK~D~~~~~~v~~~~- 85 (163)
++..+||||.- ..+ ...++.+|++++|+|.+....... ..++..+... +.|. ++|+||.|+.+.... .++
T Consensus 84 ~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~-~~~~ 155 (225)
T cd01882 84 RLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKT-LRKT 155 (225)
T ss_pred eEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHH-HHHH
Confidence 34455599854 222 234688999999999876433222 2233444332 3674 559999998642211 122
Q ss_pred ---HHH-HHHH--cCCeEEEEcCCCCCC
Q 031249 86 ---GEQ-FAKE--NGLLFLEASARTAQN 107 (163)
Q Consensus 86 ---~~~-~~~~--~~~~~~~~Sa~~~~~ 107 (163)
+.. +..+ .+.+++.+||++.-.
T Consensus 156 ~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 156 KKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 211 2211 235699999998744
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00043 Score=55.49 Aligned_cols=84 Identities=20% Similarity=0.144 Sum_probs=53.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
..+..+||||++.|..=.=..+--+|.++.|+|+...- +. +.++.+.--+..++|++-+.||.|.... -+.+..
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi--E~--qT~KLfeVcrlR~iPI~TFiNKlDR~~r--dP~ELL 154 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI--EP--QTLKLFEVCRLRDIPIFTFINKLDREGR--DPLELL 154 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc--cH--HHHHHHHHHhhcCCceEEEeeccccccC--ChHHHH
Confidence 34455569999999864444556799999999987641 11 2233333333357999999999997442 234444
Q ss_pred HHHHHHcCCe
Q 031249 87 EQFAKENGLL 96 (163)
Q Consensus 87 ~~~~~~~~~~ 96 (163)
.++-+..++.
T Consensus 155 dEiE~~L~i~ 164 (528)
T COG4108 155 DEIEEELGIQ 164 (528)
T ss_pred HHHHHHhCcc
Confidence 4444455543
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00018 Score=60.33 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=52.6
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+...-+..+||||+-.|..-....++-+|++++|+|+...-.++. ...++...+. ..|+++|+||.|.
T Consensus 194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~---~~~i~vviNKiDR 261 (971)
T KOG0468|consen 194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN---RLPIVVVINKVDR 261 (971)
T ss_pred CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc---cCcEEEEEehhHH
Confidence 334455667799999999888889999999999999998776654 3344444343 4899999999995
No 322
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.46 E-value=0.00032 Score=49.04 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=42.8
Q ss_pred eeeEeeecccchh----hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 6 ESFFWSLLQAGQE----SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 6 ~~~l~d~Dt~G~e----~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
++.|+| |||.. ....++..|++.+|++|+|.+++...+-.+...+.+..... ...+++|.||.
T Consensus 102 ~~~lvD--tPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVD--TPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEE--EEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEe--CCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 456666 99953 33467888999999999999999865544444444444332 24588899984
No 323
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.44 E-value=0.0036 Score=48.72 Aligned_cols=58 Identities=14% Similarity=0.307 Sum_probs=45.5
Q ss_pred CCeEEEEeeCCCCCC----CCcc-------CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 63 NMSIMLVGNKCDLAH----RRAV-------SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~----~~~v-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
++|++||.||+|... +.+- ....++.||-.+|...+.+|++...|++-+...|+..++
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 689999999999732 2111 123467788889999999999999999999999887664
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.37 E-value=0.0023 Score=50.80 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=63.0
Q ss_pred eeEeeecccchhhhhh--chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--
Q 031249 7 SFFWSLLQAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-- 82 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~--~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~-- 82 (163)
+.|.| |.|+|.|-. +.-.+=...|..++++.+++..+.- ..+.+.-+... ..|++++.||+|+..+..+.
T Consensus 203 VsfVD--tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~---~lPviVvvTK~D~~~ddr~~~v 276 (527)
T COG5258 203 VSFVD--TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAM---ELPVIVVVTKIDMVPDDRFQGV 276 (527)
T ss_pred EEEEe--cCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhh---cCCEEEEEEecccCcHHHHHHH
Confidence 44555 999999854 3444567899999999999875432 12333333332 48999999999986532211
Q ss_pred HHHHHHHHH----------------------HcC---CeEEEEcCCCCCCHHHHH
Q 031249 83 KEEGEQFAK----------------------ENG---LLFLEASARTAQNVEEAF 112 (163)
Q Consensus 83 ~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~i~~lf 112 (163)
.+++..+++ ..+ .|++.+|+.+++|.+-+.
T Consensus 277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~ 331 (527)
T COG5258 277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD 331 (527)
T ss_pred HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH
Confidence 122222211 111 368999999999965443
No 325
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.35 E-value=0.0017 Score=52.24 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=56.5
Q ss_pred hhhcc-CCcEEEEEE-ECC----ChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 25 RSYYR-GAAGALLVY-DIT----RRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 25 ~~~~~-~ad~~i~v~-d~~----~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
+..+. ++|+.|+|. |.+ .++.+.. -..+++++++.. +|++++.|+.|-..+ .+.+....+...++.++
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~---kPfiivlN~~dp~~~--et~~l~~~l~eky~vpv 212 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN---KPFIILLNSTHPYHP--ETEALRQELEEKYDVPV 212 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC---CCEEEEEECcCCCCc--hhHHHHHHHHHHhCCce
Confidence 44455 899999999 663 1122333 345888887754 999999999993221 13344456667778887
Q ss_pred EEEcC--CCCCCHHHHHHHHHH
Q 031249 98 LEASA--RTAQNVEEAFIKTAA 117 (163)
Q Consensus 98 ~~~Sa--~~~~~i~~lf~~l~~ 117 (163)
+.+|+ .+..+|..+|+.++.
T Consensus 213 l~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 213 LAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred EEEEHHHcCHHHHHHHHHHHHh
Confidence 77776 444556666665543
No 326
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.35 E-value=0.00095 Score=54.95 Aligned_cols=104 Identities=17% Similarity=0.344 Sum_probs=79.3
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCC--CCccCHHHHHHHH-HHcCCeEEE
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH--RRAVSKEEGEQFA-KENGLLFLE 99 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~--~~~v~~~~~~~~~-~~~~~~~~~ 99 (163)
-.+|...+|++||||.+.+..+|+.+..+...+..+.. ..+|+++++++--... .+.+...++..++ +...+.+|+
T Consensus 89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence 36688889999999999999999998887777755443 4689999988754322 3444555555554 445677999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 031249 100 ASARTAQNVEEAFIKTAAKILQNIQEGA 127 (163)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~~~~~~~~ 127 (163)
.++..|-+++.+|+.+...++....+..
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~~~~~qq 196 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQLRKYQQ 196 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998887744433
No 327
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.30 E-value=0.0011 Score=50.27 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=63.3
Q ss_pred eeEeeecccch-hhhhh-----chhhhccCC--cEEEEEEEC---CChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 7 SFFWSLLQAGQ-ESFRS-----ITRSYYRGA--AGALLVYDI---TRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 7 ~~l~d~Dt~G~-e~~~~-----~~~~~~~~a--d~~i~v~d~---~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+....+||||| |-|.. ++...+... -++++|+|. +.+.+|-. +...-.-+.+ ...|+|++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 34445569997 33432 333333332 355566664 33444533 1112222333 3589999999999
Q ss_pred CCCCCccCH-----HHHHHHHH-------------------H--cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSK-----EEGEQFAK-------------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 75 ~~~~~~v~~-----~~~~~~~~-------------------~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+.+..-... +..+.... + .++..+-||+.+|.|.++.|..+-..+-++.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 865321110 00111111 1 1355899999999999999998877766553
No 328
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.28 E-value=0.0011 Score=49.15 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=51.1
Q ss_pred cceeeEeeecccchhhhhh-----chhhhccCCcEEEEEEECCChHHHHHHH---HHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 4 SQESFFWSLLQAGQESFRS-----ITRSYYRGAAGALLVYDITRRETFNHLS---SWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-----~~~~~~~~ad~~i~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+.-+.+|| .+||+.|-. -....+++.+++|+|||+...+-..++. ..++.+.++. |...+....+|.|+
T Consensus 52 nl~LnlwD--cGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDL 128 (295)
T KOG3886|consen 52 NLVLNLWD--CGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDL 128 (295)
T ss_pred hheeehhc--cCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechh
Confidence 35667788 799985432 3455789999999999998765444443 3455566554 66788889999998
Q ss_pred CC
Q 031249 76 AH 77 (163)
Q Consensus 76 ~~ 77 (163)
..
T Consensus 129 v~ 130 (295)
T KOG3886|consen 129 VQ 130 (295)
T ss_pred cc
Confidence 65
No 329
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.25 E-value=0.0032 Score=44.63 Aligned_cols=84 Identities=25% Similarity=0.243 Sum_probs=56.9
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHH
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 85 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~ 85 (163)
++.+..+||||... ......+..+|.++++...+ ..+...+..+++.+.+. +.|+.+|+||.|... -...+
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~~ 162 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAEE 162 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHHH
Confidence 34444555886432 23345678899999999877 44666777777776654 367899999999633 13456
Q ss_pred HHHHHHHcCCeEE
Q 031249 86 GEQFAKENGLLFL 98 (163)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (163)
+.+++++.+++++
T Consensus 163 ~~~~~~~~~~~vl 175 (179)
T cd03110 163 IEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCCeE
Confidence 7778888888754
No 330
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.02 E-value=0.0018 Score=50.59 Aligned_cols=92 Identities=23% Similarity=0.204 Sum_probs=59.6
Q ss_pred cc-hhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 15 AG-QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 15 ~G-~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
+| ..++.......+..+|.++-|.|+-++.+... ..++.+.. ..|.++|+||.|+.... +..+=...+.++.
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~----~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~ 90 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK----EKPKLLVLNKADLAPKE-VTKKWKKYFKKEE 90 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc----cCCcEEEEehhhcCCHH-HHHHHHHHHHhcC
Confidence 55 45677778889999999999999999875543 12233322 35669999999995422 2122222233333
Q ss_pred CCeEEEEcCCCCCCHHHHHH
Q 031249 94 GLLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~lf~ 113 (163)
+...+.++++.+.+...+..
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CCccEEEEeecccCccchHH
Confidence 56677788888777666664
No 331
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.00 E-value=0.008 Score=49.30 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=44.2
Q ss_pred CCeEEEEeeCCCCCC----CCc-------cCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 63 NMSIMLVGNKCDLAH----RRA-------VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~----~~~-------v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
++|++||++|.|... +.. ......+.+|-.+|...+.+|++...+++-++..|+..+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 479999999999632 111 11234677888899999999999999999888887666544
No 332
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.001 Score=51.27 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=68.2
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc--C
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S 82 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--~ 82 (163)
+-.+|.||++-.-+..-.-..-.|++++++..+. +++-+.+.. -++.+. +.++++-||+|+..+.+. .
T Consensus 127 VSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKiDli~e~~A~eq 200 (466)
T KOG0466|consen 127 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKIDLIKESQALEQ 200 (466)
T ss_pred EEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechhhhhhHHHHHHH
Confidence 3445689998765433333445688999987664 444444322 112222 568999999999664322 1
Q ss_pred HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
.+++..|.+.. +.+++++||.-+.||+.+.+.+++.+-
T Consensus 201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 23344454433 467999999999999999999887653
No 333
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.005 Score=51.35 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=49.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
..|..+||||+-.|.--.+..++--|++++|++....--- .....++++.++. +|.+-+.||.|..
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~ry~---vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKRYN---VPRICFINKMDRM 169 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHhcC---CCeEEEEehhhhc
Confidence 3444555999999999899999999999999997653211 1233455666654 8999999999963
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.90 E-value=0.0027 Score=45.15 Aligned_cols=44 Identities=27% Similarity=0.148 Sum_probs=28.0
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 32 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 32 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
|++++|.|+.++.+... ..+.+.+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987643321 12222221 1123589999999999954
No 335
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.017 Score=43.28 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=69.8
Q ss_pred ceeeEeeecccchhhhh-hc--hhhhccCCcEEEEEEECCChHHHHHHHH---HHHHHHHhcCCCCeEEEEeeCCCCCC-
Q 031249 5 QESFFWSLLQAGQESFR-SI--TRSYYRGAAGALLVYDITRRETFNHLSS---WLEDARQHANPNMSIMLVGNKCDLAH- 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~-~~--~~~~~~~ad~~i~v~d~~~~~s~~~~~~---~~~~l~~~~~~~~p~ilv~nK~D~~~- 77 (163)
+++++|| .|||-.|- +- -...++.+-++|||+|+-+.- .+++.. .+....+. ++++.+=+.+.|.|-..
T Consensus 75 inf~v~d--fPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 75 INFQVWD--FPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSD 150 (347)
T ss_pred cceEEee--cCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeec-CCCceEEEEEEeccCCch
Confidence 4688999 69986543 22 356789999999999986531 233322 33333222 26788888999999533
Q ss_pred CCccCH-----HHHHHHHHHcCC-----eEEEEcCCCCCCHHHHHHHHHHHHHHHHhh
Q 031249 78 RRAVSK-----EEGEQFAKENGL-----LFLEASARTAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 78 ~~~v~~-----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+-.+.. +....-+...|. .|+.+| .-...|.+.|..+++.++..+.-
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-ecchHHHHHHHHHHHHHhhhchh
Confidence 222211 112222222332 355544 44577899999998888776543
No 336
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.76 E-value=0.0039 Score=47.91 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=38.5
Q ss_pred CeEEEEeeCCCCCCCCccCHHHHHHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 031249 64 MSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK 118 (163)
Q Consensus 64 ~p~ilv~nK~D~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (163)
.+-++|+||+|+........+......+. ...+++++|+++++|+++++++|...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56799999999964211123333333333 24679999999999999999999763
No 337
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.73 E-value=0.0097 Score=46.17 Aligned_cols=80 Identities=6% Similarity=-0.063 Sum_probs=42.7
Q ss_pred ccceeeEeeecccchhhhhh-------chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEee
Q 031249 3 FSQESFFWSLLQAGQESFRS-------ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGN 71 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~-------~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ilv~n 71 (163)
.|..+.+|| |||...... ....++ ...|++|||..++.......-...++.+...-+ .-.+.||+.|
T Consensus 84 ~G~~l~VID--TPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 84 AGFTLNIID--TPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLT 161 (313)
T ss_pred CCeEEEEEE--CCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEE
Confidence 345666666 999654322 122222 269999999765532111111223344433321 1257899999
Q ss_pred CCCCCCCCccCHH
Q 031249 72 KCDLAHRRAVSKE 84 (163)
Q Consensus 72 K~D~~~~~~v~~~ 84 (163)
+.|...+...+.+
T Consensus 162 h~d~~~pd~~~~e 174 (313)
T TIGR00991 162 HAQFSPPDGLEYN 174 (313)
T ss_pred CCccCCCCCCCHH
Confidence 9997644444433
No 338
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0015 Score=51.51 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=45.8
Q ss_pred Eeeecccchh-----------hhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 9 FWSLLQAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 9 l~d~Dt~G~e-----------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+-.+||||.- .|.....=++..+|.||++||+...+--......+..++.+ .-.+-||+||.|.++
T Consensus 149 vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 149 VTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQVD 225 (532)
T ss_pred eeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEeccccccC
Confidence 4445599941 24445666889999999999987654334444556666543 357889999999865
Q ss_pred C
Q 031249 78 R 78 (163)
Q Consensus 78 ~ 78 (163)
.
T Consensus 226 t 226 (532)
T KOG1954|consen 226 T 226 (532)
T ss_pred H
Confidence 3
No 339
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.60 E-value=0.038 Score=41.15 Aligned_cols=81 Identities=23% Similarity=0.255 Sum_probs=54.1
Q ss_pred ccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 3 FSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+...+.+.|. .||.|.|. +...+++|.+|.|.|.+. .++..... ++++.+... =.++.+|+||.|..
T Consensus 132 ~~~e~VivDt-EAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e~------ 198 (255)
T COG3640 132 NRYEVVIVDT-EAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDEE------ 198 (255)
T ss_pred ccCcEEEEec-ccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccch------
Confidence 3456778886 78999987 788899999999999884 45554433 333333331 27899999999952
Q ss_pred HHHHHHHHHHcCCe
Q 031249 83 KEEGEQFAKENGLL 96 (163)
Q Consensus 83 ~~~~~~~~~~~~~~ 96 (163)
.......+...+.+
T Consensus 199 e~~~~~~~~~~~~~ 212 (255)
T COG3640 199 EELLRELAEELGLE 212 (255)
T ss_pred hHHHHhhhhccCCe
Confidence 23344444555543
No 340
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.53 E-value=0.0068 Score=43.77 Aligned_cols=53 Identities=25% Similarity=0.156 Sum_probs=39.7
Q ss_pred EEEeeCCCCCCCCccCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 67 MLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 67 ilv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++|+||.|+...-....+....-+++. +.+++++|.++|+|++++++++....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 789999999664444445555444443 46799999999999999999886643
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.022 Score=48.20 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=57.3
Q ss_pred eeEeeecccch---hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH
Q 031249 7 SFFWSLLQAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 83 (163)
Q Consensus 7 ~~l~d~Dt~G~---e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~ 83 (163)
+.+.| .||. ....+.+..+..++|++|||..+.+..+..+. +++....+. +.-++++.||+|....+.-..
T Consensus 208 ivliD--sPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---KpniFIlnnkwDasase~ec~ 281 (749)
T KOG0448|consen 208 IVLID--SPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---KPNIFILNNKWDASASEPECK 281 (749)
T ss_pred ceecc--CCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---CCcEEEEechhhhhcccHHHH
Confidence 34444 7884 45666778899999999999999887655543 333333332 245666788889866544444
Q ss_pred HHHHHHHHHcCC--------eEEEEcCC
Q 031249 84 EEGEQFAKENGL--------LFLEASAR 103 (163)
Q Consensus 84 ~~~~~~~~~~~~--------~~~~~Sa~ 103 (163)
+.+..-..+.+. -+++||++
T Consensus 282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 282 EDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 444444334432 27888865
No 342
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.36 E-value=0.02 Score=41.89 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=59.2
Q ss_pred ccceeeEeeecccchh-------hhhh-c---hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEE
Q 031249 3 FSQESFFWSLLQAGQE-------SFRS-I---TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP--NMSIMLV 69 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e-------~~~~-~---~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ilv 69 (163)
.|..+.++| |||-- .... + ......+.|+||||+.+... +-. -...++.+.+.-++ -.-++||
T Consensus 47 ~g~~v~VID--TPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~-~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 47 DGRQVTVID--TPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEE-DREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp TTEEEEEEE----SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGGGGGEEEE
T ss_pred cceEEEEEe--CCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHH-HHHHHHHHHHHccHHHHhHhhHH
Confidence 455666666 99931 1111 1 12335679999999998832 211 12233334333221 1458888
Q ss_pred eeCCCCCCCCccC-------HHHHHHHHHHcCCeEEEEcCC------CCCCHHHHHHHHHHHHHHH
Q 031249 70 GNKCDLAHRRAVS-------KEEGEQFAKENGLLFLEASAR------TAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 70 ~nK~D~~~~~~v~-------~~~~~~~~~~~~~~~~~~Sa~------~~~~i~~lf~~l~~~~~~~ 122 (163)
.|..|...+..+. ......+.+..+-.|+.++.+ +...+.++|..+-..+.++
T Consensus 123 fT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 123 FTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8988865544321 112345566667667777766 2234556665554444443
No 343
>PTZ00258 GTP-binding protein; Provisional
Probab=96.30 E-value=0.037 Score=44.38 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCeEEEEeeCC--CCCCCCccCHHHHHHHHHHc-CCeEEEEcCCCCC
Q 031249 63 NMSIMLVGNKC--DLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQ 106 (163)
Q Consensus 63 ~~p~ilv~nK~--D~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~ 106 (163)
.+|+++|+|+. |+.....-..+.+..++... +.+++.+||+-..
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 48999999999 65211111334555666666 4789999986544
No 344
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.16 E-value=0.02 Score=47.04 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=49.3
Q ss_pred hccCCcEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc---CCeEEEEc
Q 031249 27 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN---GLLFLEAS 101 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~---~~~~~~~S 101 (163)
.+..+|+|+.++|+-++--|. ++..++.++. +.+-.+|+.||.|| ++.+....|+..+ ++++++.|
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDL-----l~~~qr~aWa~YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADL-----LPPEQRVAWAEYFRQNNIPVVFFS 241 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhc-----CCHHHHHHHHHHHHhcCceEEEEe
Confidence 456899999999999986653 3444444442 33678999999999 4456666665544 68888888
Q ss_pred CCC
Q 031249 102 ART 104 (163)
Q Consensus 102 a~~ 104 (163)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 876
No 345
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.05 E-value=0.0051 Score=46.38 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=57.9
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH-------cCCeEE
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFL 98 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~-------~~~~~~ 98 (163)
....-+|.+++|.-..-.+..+.++.=+-++ .=++|.||.|.+.. .....+....... +..+++
T Consensus 138 ~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA-~~~~~~l~~~l~l~~~~~~~W~ppV~ 208 (266)
T PF03308_consen 138 DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGA-DRTVRDLRSMLHLLREREDGWRPPVL 208 (266)
T ss_dssp HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHH-HHHHHHHHHHHHHCSTSCTSB--EEE
T ss_pred HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHH-HHHHHHHHHHHhhccccccCCCCCEE
Confidence 3567789999999876655554433322222 22888999996331 1122333333322 234699
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 031249 99 EASARTAQNVEEAFIKTAAKILQNIQEGALD 129 (163)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~ 129 (163)
.+||.++.||+++++.+.++..........+
T Consensus 209 ~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~ 239 (266)
T PF03308_consen 209 KTSALEGEGIDELWEAIDEHRDYLKESGELE 239 (266)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHHHHHTTHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcchHH
Confidence 9999999999999999988776666554433
No 346
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.94 E-value=0.15 Score=36.19 Aligned_cols=89 Identities=8% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 109 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (163)
..|-|+|++|.....|+...+.-+..+-..-.-++ +.++++-....+.-.+...++.+++..+..+++.+.-.+..+..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 57999999999999988887776666533222334 44455554444445688999999999999999988887776666
Q ss_pred HHHHHHHHHH
Q 031249 110 EAFIKTAAKI 119 (163)
Q Consensus 110 ~lf~~l~~~~ 119 (163)
.+-+.|++.+
T Consensus 143 ~lAqRLL~~l 152 (176)
T PF11111_consen 143 SLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 347
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.86 E-value=0.02 Score=45.59 Aligned_cols=67 Identities=22% Similarity=0.150 Sum_probs=46.7
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
..|..-....+..+|+||.|.|+-|+.+-.. +..| +.+.. .++..|+|+||+|+ |+.+....|+..+
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~-gnKkLILVLNK~DL-----VPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAH-GNKKLILVLNKIDL-----VPREVVEKWLVYL 202 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhcc-CCceEEEEeehhcc-----CCHHHHHHHHHHH
Confidence 4455556677789999999999999876543 2222 22222 34789999999999 5667777776655
No 348
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.80 E-value=0.054 Score=40.82 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=39.6
Q ss_pred cceeeEeeecccchhhhh--h--------chhhhcc--CCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCC--CCeEEE
Q 031249 4 SQESFFWSLLQAGQESFR--S--------ITRSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIML 68 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~--~--------~~~~~~~--~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~il 68 (163)
+..+.+|| |||-.... . ....|++ ..|+++||..++... .+.+ ...++.+.+.... -.++++
T Consensus 78 g~~i~vID--TPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 78 GFKLNIID--TPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred CeEEEEEE--CCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEE
Confidence 44566666 99954331 0 1233443 578888887665432 2221 2344444433221 157999
Q ss_pred EeeCCCCCC
Q 031249 69 VGNKCDLAH 77 (163)
Q Consensus 69 v~nK~D~~~ 77 (163)
|.||.|...
T Consensus 155 V~T~~d~~~ 163 (249)
T cd01853 155 VLTHAASSP 163 (249)
T ss_pred EEeCCccCC
Confidence 999999754
No 349
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.017 Score=49.38 Aligned_cols=60 Identities=28% Similarity=0.326 Sum_probs=43.9
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.+.-+|+||+-+|.+......+=+|++++++|+... ++..-+ ++.+. .+..++||+||+|
T Consensus 73 ~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vl----rq~~~---~~~~~~lvinkid 135 (887)
T KOG0467|consen 73 LINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVL----RQAWI---EGLKPILVINKID 135 (887)
T ss_pred EEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHH----HHHHH---ccCceEEEEehhh
Confidence 344445999999999999999999999999998754 233322 22222 2356799999999
No 350
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.43 E-value=0.11 Score=41.70 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=55.4
Q ss_pred chhhhc---cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcC----C
Q 031249 23 ITRSYY---RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG----L 95 (163)
Q Consensus 23 ~~~~~~---~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~----~ 95 (163)
+|...| ..+|++|-|.|+-|+..-. ...++...+...+-+.+|+|+||+|| ++..-...|...+. .
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTr--c~~ve~ylkke~phKHli~vLNKvDL-----VPtwvt~~Wv~~lSkeyPT 275 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTR--CKHVEEYLKKEKPHKHLIYVLNKVDL-----VPTWVTAKWVRHLSKEYPT 275 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccc--cHHHHHHHhhcCCcceeEEEeecccc-----ccHHHHHHHHHHHhhhCcc
Confidence 455544 5799999999999875332 23334443333356789999999999 45555555555443 3
Q ss_pred eEEEEcCCCCCCHHHHHHHH
Q 031249 96 LFLEASARTAQNVEEAFIKT 115 (163)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l 115 (163)
--|-.|..+..|-..+++.|
T Consensus 276 iAfHAsi~nsfGKgalI~ll 295 (572)
T KOG2423|consen 276 IAFHASINNSFGKGALIQLL 295 (572)
T ss_pred eeeehhhcCccchhHHHHHH
Confidence 35666777777755555544
No 351
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=95.39 E-value=0.046 Score=41.60 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCcEEEEEEECCChH-------HHH----HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH--HHHHHHHHcCCe
Q 031249 30 GAAGALLVYDITRRE-------TFN----HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE--EGEQFAKENGLL 96 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~-------s~~----~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~--~~~~~~~~~~~~ 96 (163)
-.+|+|+++|+.+.. .+. .+..-+.++.+......||.||+||+|+...-..-.. ......+.+|+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t 104 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT 104 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence 469999999985421 112 2233455555555568999999999998653110000 011122334544
Q ss_pred EEEEcCCCCCC---HHHHHHHHHHHHHHHHhhc
Q 031249 97 FLEASARTAQN---VEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 97 ~~~~Sa~~~~~---i~~lf~~l~~~~~~~~~~~ 126 (163)
+-.-....... +.+.|..++..+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 137 (266)
T PF14331_consen 105 FPYDEDADGDAWAWFDEEFDELVARLNARVLER 137 (266)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333 7777777777777665553
No 352
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.35 E-value=0.087 Score=35.87 Aligned_cols=63 Identities=6% Similarity=0.120 Sum_probs=42.5
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+.++| +++. ........+..+|.++++.+.+ ..++..+...++.+.+.. ...++.+|.|+.+.
T Consensus 47 ~VIiD--~p~~--~~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 47 YIIID--TGAG--ISDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred EEEEE--CCCC--CCHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 34444 6653 2333457889999999999876 556666666666665543 34577899999974
No 353
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=95.19 E-value=0.024 Score=42.30 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=73.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D 74 (163)
.+.+.| .+|+..-+..|-.++.+.-.++|+...+. +...+.-..++..+..+.. .+.++|+++||.|
T Consensus 200 ifrmvD--vGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 200 IFRMVD--VGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred eeeeee--cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 344555 89999888899999999888888776532 2223333334444444433 4689999999999
Q ss_pred CCCCCc----------------cCHHHHHHHHHH-c---C-----C-eEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 75 LAHRRA----------------VSKEEGEQFAKE-N---G-----L-LFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 75 ~~~~~~----------------v~~~~~~~~~~~-~---~-----~-~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
+.+++- ...+-++.+.-. + + + --..++|.+.+||.-+|..+...+++..
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 865322 112223333221 1 1 1 1245678888999999998887777654
No 354
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.18 E-value=0.35 Score=37.46 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=59.2
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHH---------HcCCe
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---------ENGLL 96 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~---------~~~~~ 96 (163)
...+-+|.+++|.-..-.+..+.++. -+.+.. =++|+||.|... .+....+.....+ .+..+
T Consensus 160 ~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~-A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 160 DIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKG-AEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred HHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhh-HHHHHHHHHHHHHhhcccccccCCCCc
Confidence 35567899999987665554554433 222222 278899999533 1112222222111 12245
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 031249 97 FLEASARTAQNVEEAFIKTAAKILQNIQEGAL 128 (163)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~ 128 (163)
++.++|..++||+++++.+..+..........
T Consensus 231 v~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 231 VVTTSALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred eeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999998887776665543
No 355
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.27 Score=39.32 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=59.8
Q ss_pred eeEeeecccchhhhhhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc---
Q 031249 7 SFFWSLLQAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--- 81 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v--- 81 (163)
+-|.| .||+.+|....-.-+ -.-|.+.+|++++..-+- ...+.+..+... ++|++++.+|+|+..+..+
T Consensus 251 vTfiD--LAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 251 VTFID--LAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred EEEee--cccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh---CCCeEEEEEeeccccchhHHHH
Confidence 44555 799999876433222 235778888887754321 123445555554 4999999999998654111
Q ss_pred ---------------------CHHHHHHHHHHc----CCeEEEEcCCCCCCHHH
Q 031249 82 ---------------------SKEEGEQFAKEN----GLLFLEASARTAQNVEE 110 (163)
Q Consensus 82 ---------------------~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~ 110 (163)
+..++...+.+. -.|+|-+|..+|+++.-
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 122333333332 24688899999999653
No 356
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.05 E-value=0.03 Score=46.15 Aligned_cols=66 Identities=23% Similarity=0.224 Sum_probs=47.0
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
..|.|.-+|.||+-.|.+-....++-.||++.|+|..+.--.+. ...+ +.+.++ +.-+|+.||.|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~ER----IkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAER----IKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHhh----ccceEEeehhhH
Confidence 35666666699999999999999999999999999987532221 2222 233332 344788999994
No 357
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.027 Score=45.09 Aligned_cols=105 Identities=23% Similarity=0.172 Sum_probs=62.3
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCCCC--c--
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRR--A-- 80 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D~~~~~--~-- 80 (163)
+-.+|+||+..|-.-.-.-..+||..++|.++.. ..-|+.-.+..+...-... .-...|+++||.|.+... .
T Consensus 159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eR 238 (501)
T KOG0459|consen 159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 238 (501)
T ss_pred EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhh
Confidence 3445588887777655556678899999998743 2234443333333221111 235678889999975411 0
Q ss_pred --cCHHHHHHHHHHcCC------eEEEEcCCCCCCHHHHHH
Q 031249 81 --VSKEEGEQFAKENGL------LFLEASARTAQNVEEAFI 113 (163)
Q Consensus 81 --v~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~lf~ 113 (163)
...+....++...|+ .++++|..+|.++.+...
T Consensus 239 y~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 239 YEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 011233344444443 399999999999887654
No 358
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.83 E-value=0.29 Score=39.16 Aligned_cols=110 Identities=11% Similarity=0.151 Sum_probs=52.4
Q ss_pred eeeEeeecccchhhhhh---chhhhccCCcEEEEEEECCChHHHHHHHHH-HHHHHHhcCCCCeEEEEeeCCCC--C---
Q 031249 6 ESFFWSLLQAGQESFRS---ITRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDL--A--- 76 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~---~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~-~~~l~~~~~~~~p~ilv~nK~D~--~--- 76 (163)
++.+||++-.|...|.. +-..-+..-|.||++.+-. |.....+ .+.+++. ++|+++|-||+|. .
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence 68999963333333322 2233456779888877632 4343333 3444443 4899999999995 1
Q ss_pred --CCCccCH----HHHHHHH----HHcCC---eEEEEcCCCCC--CHHHHHHHHHHHHHHH
Q 031249 77 --HRRAVSK----EEGEQFA----KENGL---LFLEASARTAQ--NVEEAFIKTAAKILQN 122 (163)
Q Consensus 77 --~~~~v~~----~~~~~~~----~~~~~---~~~~~Sa~~~~--~i~~lf~~l~~~~~~~ 122 (163)
.++.... +++++-+ +..+. ++|.+|..+-. ++..+.++|.+.+...
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1112222 2233222 22343 38999987654 4666777776655444
No 359
>PHA02518 ParA-like protein; Provisional
Probab=94.56 E-value=0.38 Score=34.61 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=37.7
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMS-IMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~ 75 (163)
+..+||||. ...+....+..+|.+|++...+.. .....+..+++.+.... ...| ..++.|+.+.
T Consensus 79 ~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 79 YVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFIISRAIK 145 (211)
T ss_pred EEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEEEeccCC
Confidence 344448875 345567788899999999987632 23333444444443322 2344 4566777653
No 360
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.51 E-value=0.38 Score=36.74 Aligned_cols=77 Identities=17% Similarity=0.003 Sum_probs=46.9
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 109 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (163)
..|..++|.|++-. .+++.. ...+.+.. .+--+|.||.|.... .-.+..+....++|+..++ +|++++
T Consensus 190 ~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~ 257 (272)
T TIGR00064 190 APDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEKID 257 (272)
T ss_pred CCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChH
Confidence 48999999998753 223322 23333322 245788999997432 2334445556789988877 677777
Q ss_pred HHHHHHHHH
Q 031249 110 EAFIKTAAK 118 (163)
Q Consensus 110 ~lf~~l~~~ 118 (163)
++-..-.+.
T Consensus 258 dl~~~~~~~ 266 (272)
T TIGR00064 258 DLAPFDADW 266 (272)
T ss_pred hCccCCHHH
Confidence 664433333
No 361
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.42 E-value=0.44 Score=37.85 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=53.1
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
++.++| -| .-.......++.++|.+++|.+.+ ..+.+...+.+..+++.+....+..+++||.+...
T Consensus 219 ~~vV~D--lp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 219 DFVVVD--LP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred CeEEEc--CC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 455666 45 334445678999999999999976 56788889999999988877788899999999744
No 362
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=94.37 E-value=0.29 Score=39.23 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=34.1
Q ss_pred Eeeecccchhhhhhc--hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~--~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
|..+|.+|+|+|-.. .-+.=+--|-..+++-++-.- .--..+.+...... .+|+++|.||+|+
T Consensus 221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL---~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL---HVPVFVVVTKIDM 285 (641)
T ss_pred EEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh---cCcEEEEEEeecc
Confidence 334458999998652 222223345566666544321 11112223333333 3899999999997
No 363
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.35 E-value=0.28 Score=44.91 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=36.0
Q ss_pred cCCcEEEEEEECCChH-----HH----HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 29 RGAAGALLVYDITRRE-----TF----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
+-.+|+|+++|+.+.. .. ..+...+.++.+......||.|+.||+|+..
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 3589999999986532 11 2344556667666667899999999999864
No 364
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.19 Score=37.97 Aligned_cols=93 Identities=22% Similarity=0.392 Sum_probs=62.1
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC---------------------------Cc-
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---------------------------RA- 80 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~---------------------------~~- 80 (163)
.-..+++.|||.+....+.++..|+...--.. .+ -++-++||.|.+.. ..
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgi 154 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGI 154 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccc
Confidence 34678999999999999999999987542221 11 23445888886421 00
Q ss_pred ----------------cCHHHHHHHHHHcCCeEEEEcCCCC------------CCHHHHHHHHHHHHHHHH
Q 031249 81 ----------------VSKEEGEQFAKENGLLFLEASARTA------------QNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 81 ----------------v~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~lf~~l~~~~~~~~ 123 (163)
.....+..|+.+.++.+++.++.+. .||+.+|..|-..+-..+
T Consensus 155 setegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgm 225 (418)
T KOG4273|consen 155 SETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGM 225 (418)
T ss_pred cccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccc
Confidence 1122346788889999999988542 478888888876654443
No 365
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=94.17 E-value=0.49 Score=39.56 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249 45 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 45 s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (163)
.+.++...++.+++ .++|++|++||.|...+ ...+.+++++.+.|+++..+. ++-|+|-.++-+.+++.+.
T Consensus 357 Gl~NL~RHIenvr~---FGvPvVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRK---FGVPVVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHH---cCCCEEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 34566666777765 45999999999997442 235678889999999876544 5667787777777766554
No 366
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.07 E-value=0.11 Score=40.63 Aligned_cols=107 Identities=21% Similarity=0.172 Sum_probs=67.8
Q ss_pred cceeeEeeecccch---------hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE----EEEe
Q 031249 4 SQESFFWSLLQAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI----MLVG 70 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~---------e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~----ilv~ 70 (163)
|..+.+.| |-|- ..|.+. -.....+|.++.|.|++.+..-......+.-+.+..-++.|. +=|-
T Consensus 225 g~~vlltD--TvGFisdLP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVd 301 (410)
T KOG0410|consen 225 GNFVLLTD--TVGFISDLPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVD 301 (410)
T ss_pred CcEEEEee--chhhhhhCcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhc
Confidence 44455555 8882 223322 234568999999999999877666666666666654333343 4456
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 123 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (163)
||+|..+. .++.+ .++ .+.+||.+|+|.+++.+.+-..+....
T Consensus 302 nkiD~e~~-~~e~E-------~n~--~v~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 302 NKIDYEED-EVEEE-------KNL--DVGISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccccccc-cCccc-------cCC--ccccccccCccHHHHHHHHHHHhhhhh
Confidence 77776432 22211 112 577899999999999988877665543
No 367
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.96 E-value=0.4 Score=36.56 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=48.8
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
-..+.++|.+|+|...| +..+-++...++.+..- ++|..+|.||.++. .+ +++.++.+.+++++
T Consensus 180 i~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f---~ip~~iViNr~~~g----~s--~ie~~~~e~gi~il 243 (284)
T COG1149 180 IASLKGADLAILVTEPT-PFGLHDLKRALELVEHF---GIPTGIVINRYNLG----DS--EIEEYCEEEGIPIL 243 (284)
T ss_pred HHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh---CCceEEEEecCCCC----ch--HHHHHHHHcCCCee
Confidence 34578999999999887 45667777777777664 49999999999652 22 78889999988743
No 368
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=93.78 E-value=0.85 Score=36.38 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=28.8
Q ss_pred CCeEEEEeeCCCCC-CCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249 63 NMSIMLVGNKCDLA-HRRAVSKEEGEQFAKENGLLFLEASART 104 (163)
Q Consensus 63 ~~p~ilv~nK~D~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 104 (163)
.+|+++++|+.|.. ....-..+++..++...+.+++++||.-
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 241 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI 241 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 48999999998841 1111224556667767788899999853
No 369
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.62 E-value=0.42 Score=30.92 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=38.7
Q ss_pred ecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEeeC
Q 031249 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNK 72 (163)
Q Consensus 12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ilv~nK 72 (163)
+||++... ......+..+|.+|++.+.+ ..++..+..+++.+.+...+ ...+.+|+|+
T Consensus 48 iDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 48 VDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 34776432 23345778899999999755 56777777777777665433 4567777775
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=93.28 E-value=0.77 Score=36.22 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=57.8
Q ss_pred Eeeecccchhhhhh-c---hhhh--ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 9 FWSLLQAGQESFRS-I---TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 9 l~d~Dt~G~e~~~~-~---~~~~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+||+|.-.... + +... .-..|.++||.|++... +.......+.+.. .+--+|.||.|....
T Consensus 225 vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~---~~~giIlTKlD~~~~---- 294 (336)
T PRK14974 225 VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV---GIDGVILTKVDADAK---- 294 (336)
T ss_pred EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC---CCCEEEEeeecCCCC----
Confidence 34445999643221 1 1112 22578899999987643 2222233333322 235778999997432
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 83 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
.=-+..++...+.|+..++ +|++++++...-...+.++
T Consensus 295 ~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~v~~ 332 (336)
T PRK14974 295 GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWFVDK 332 (336)
T ss_pred ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHHHHH
Confidence 1233345556788988887 6888887765544444443
No 371
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.05 E-value=1.5 Score=30.46 Aligned_cols=83 Identities=11% Similarity=-0.048 Sum_probs=49.5
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
+.|+| |+|.... .....+..+|.+|++.+.+. .++..+..+++.+.+.. .....++.|+.+... ....+..
T Consensus 65 ~viiD--~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~--~~~~~~~ 135 (179)
T cd02036 65 YILID--SPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM--VEGGDMV 135 (179)
T ss_pred EEEEE--CCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc--cchhhHH
Confidence 44555 7764322 23455688999999998764 45666666666665532 235678899998532 1222223
Q ss_pred HHHHHHcCCeEE
Q 031249 87 EQFAKENGLLFL 98 (163)
Q Consensus 87 ~~~~~~~~~~~~ 98 (163)
..+.+.++.+++
T Consensus 136 ~~~~~~~~~~v~ 147 (179)
T cd02036 136 EDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCCEE
Confidence 445556676643
No 372
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=92.75 E-value=2.4 Score=35.84 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=49.8
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~ 96 (163)
+....|...|+.+-++||+|+-=..- .+-.... ..+.+..+.+...|+|+||.|+.+.....+..+.+++...-+|
T Consensus 436 d~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 436 ETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 44555788999999999999832111 1111112 2233444467889999999999776667788888877654333
No 373
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=92.04 E-value=1.1 Score=38.65 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=40.4
Q ss_pred cceeeEeeecccchhhhh-------h---chhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CeEEEE
Q 031249 4 SQESFFWSLLQAGQESFR-------S---ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPN--MSIMLV 69 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~-------~---~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ilv 69 (163)
+..+.|+| |||..... . .+..+++ ..|++|||..++.......-..+++.+.+..... .-+|||
T Consensus 165 G~~L~VID--TPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV 242 (763)
T TIGR00993 165 GVKIRVID--TPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT 242 (763)
T ss_pred CceEEEEE--CCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE
Confidence 44455555 99964321 1 1222444 5899999998764322212224555554443321 467899
Q ss_pred eeCCCCCC
Q 031249 70 GNKCDLAH 77 (163)
Q Consensus 70 ~nK~D~~~ 77 (163)
.|..|...
T Consensus 243 FThgD~lp 250 (763)
T TIGR00993 243 LTHAASAP 250 (763)
T ss_pred EeCCccCC
Confidence 99999754
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.02 E-value=1.5 Score=34.24 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=48.8
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 109 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (163)
..+..++|.|++.. .+.+.+. ..+.+.. .+.-+|.||.|.... .=.+..++...++|+..++ +|++++
T Consensus 232 ~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~ 299 (318)
T PRK10416 232 APHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGID 299 (318)
T ss_pred CCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChh
Confidence 56788999998854 2333322 2222222 345788999996332 2234456677799988888 677787
Q ss_pred HHHHHHHHHHHHH
Q 031249 110 EAFIKTAAKILQN 122 (163)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (163)
++-..-.+.+.+.
T Consensus 300 Dl~~~~~~~~~~~ 312 (318)
T PRK10416 300 DLQPFDAEEFVDA 312 (318)
T ss_pred hCccCCHHHHHHH
Confidence 7654444444333
No 375
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.92 E-value=1.9 Score=31.86 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=41.3
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
.+.|.| ||+. ...+....+..+|.+|++...+ ..++..+...+..+.+......++-+|.|+.|.
T Consensus 116 D~viiD--~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 116 DWVLID--VPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred CEEEEE--CCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence 355555 7873 3345567788999999999875 455666653333333322234567789999985
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.75 E-value=0.46 Score=33.08 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=37.3
Q ss_pred eeeEeeecccchhhhhhchhh--------hccCCcEEEEEEECCChHHHH-HHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRS--------YYRGAAGALLVYDITRRETFN-HLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~--------~~~~ad~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+.+...+||+|...-..+... ..-..|++++++|+....... ....+..++.... ++|.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 455566779996433232221 233689999999976543322 2223445554432 678999995
No 377
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=91.69 E-value=0.029 Score=45.20 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=49.0
Q ss_pred cceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 4 SQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
|-++.++| |||+-.|+--.+.+++--||++.|||.+..-.-+.+--|.. ....++|-..++||+|..
T Consensus 101 g~rinlid--tpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 101 GHRINLID--TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKL 167 (753)
T ss_pred cceEeeec--CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhh
Confidence 45666766 99999999999999999999999999876432222222322 222458888999999963
No 378
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=91.21 E-value=1.1 Score=34.47 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEc
Q 031249 30 GAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~S 101 (163)
..|++||+++.+... +-.++ ..++.+.. .+++|-|+.|.|.....++. ...+..-+...++.+|...
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~----~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDI-EFMKRLSK----RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred CcceEEEEEcCCCccchHHHH-HHHHHhcc----cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence 589999999986521 11222 34444433 47899999999975533221 1223444566777755543
No 379
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=90.44 E-value=1.9 Score=32.64 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=59.0
Q ss_pred ccceeeEeeecccc------------------hhhhhhc--------hhhhcc--CCcEEEEEEECCChHHHHHHH-HHH
Q 031249 3 FSQESFFWSLLQAG------------------QESFRSI--------TRSYYR--GAAGALLVYDITRRETFNHLS-SWL 53 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G------------------~e~~~~~--------~~~~~~--~ad~~i~v~d~~~~~s~~~~~-~~~ 53 (163)
+|++++|-.+|||| .|+|... +...+. ..|+++|.+..+- .++..+. +++
T Consensus 100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDiefl 178 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFL 178 (336)
T ss_pred cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHH
Confidence 46788888899999 1233222 122233 4788888887664 3344432 345
Q ss_pred HHHHHhcCCCCeEEEEeeCCCCCC--CCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 031249 54 EDARQHANPNMSIMLVGNKCDLAH--RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 115 (163)
Q Consensus 54 ~~l~~~~~~~~p~ilv~nK~D~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l 115 (163)
+.+.+. +-++-|+-|.|... ++..-.+.++.-...+++.+++-...+.+.=+..++.-
T Consensus 179 krLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~k 238 (336)
T KOG1547|consen 179 KRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDK 238 (336)
T ss_pred HHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHH
Confidence 555443 45777888999632 11111233444455667777766555444333334433
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.07 E-value=2.5 Score=34.51 Aligned_cols=84 Identities=13% Similarity=-0.016 Sum_probs=47.2
Q ss_pred Eeeecccchhhhhh-chh---h--hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 9 FWSLLQAGQESFRS-ITR---S--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 9 l~d~Dt~G~e~~~~-~~~---~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+||||.-.... +.. . ..-..|.++||.|++.. +++..+...+.... ...=+|.||.|....
T Consensus 185 vVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~---- 254 (428)
T TIGR00959 185 VVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDAR---- 254 (428)
T ss_pred EEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCccc----
Confidence 44445999533321 111 1 12357889999998754 34444445554333 133566999995321
Q ss_pred HHHHHHHHHHcCCeEEEEcC
Q 031249 83 KEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa 102 (163)
.-.+..++...++|+..+..
T Consensus 255 ~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ccHHHHHHHHHCcCEEEEeC
Confidence 12256677778888666554
No 381
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.91 E-value=5.5 Score=28.88 Aligned_cols=86 Identities=13% Similarity=-0.036 Sum_probs=48.5
Q ss_pred eEeeecccchhhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCC-eEEEEeeCCCCCCCCccCHH
Q 031249 8 FFWSLLQAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNM-SIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~-p~ilv~nK~D~~~~~~v~~~ 84 (163)
-+..+||+|.--...+. ....+.||.+|++...+ ..++..+...++.+..... .+. ...++.|+.+.. ...+
T Consensus 118 D~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~ 192 (212)
T cd02117 118 DVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETE 192 (212)
T ss_pred CEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHH
Confidence 34444576644222221 11134799999999864 5556555555555544332 133 345889999852 2344
Q ss_pred HHHHHHHHcCCeEE
Q 031249 85 EGEQFAKENGLLFL 98 (163)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (163)
...++.+.++.+++
T Consensus 193 ~~~~~~~~~~~~vl 206 (212)
T cd02117 193 LIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHcCCCEE
Confidence 56677777776644
No 382
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=89.90 E-value=0.00032 Score=46.19 Aligned_cols=41 Identities=44% Similarity=0.674 Sum_probs=24.0
Q ss_pred EEEEECCChHHHHHHHH-HHHHHHHhcCC-CCeEEEEeeCCCC
Q 031249 35 LLVYDITRRETFNHLSS-WLEDARQHANP-NMSIMLVGNKCDL 75 (163)
Q Consensus 35 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~-~~p~ilv~nK~D~ 75 (163)
+++||.++.++++.+.. |.....+.... ..|.++++||.|+
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl 78 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDL 78 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCC
Confidence 78888888887776644 43333222111 2455666777775
No 383
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=89.84 E-value=1.5 Score=34.26 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=55.0
Q ss_pred cchhhh-hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 15 AGQESF-RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 15 ~G~e~~-~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
+|+..- -..+...++..|.||=|=|+--+-|-+. ..+..+ . +.+|-|+|.||+||-+..+ ...-++.+..+.
T Consensus 30 pgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~---~-~~k~riiVlNK~DLad~~~-~k~~iq~~~~~~ 102 (335)
T KOG2485|consen 30 PGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDF---L-PPKPRIIVLNKMDLADPKE-QKKIIQYLEWQN 102 (335)
T ss_pred chHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHh---c-CCCceEEEEecccccCchh-hhHHHHHHHhhc
Confidence 665432 2245667889999999999876554332 111122 2 3589999999999965322 233344444443
Q ss_pred CCeEEEEcCCCCCC--HHHHHHHHHHHHH
Q 031249 94 GLLFLEASARTAQN--VEEAFIKTAAKIL 120 (163)
Q Consensus 94 ~~~~~~~Sa~~~~~--i~~lf~~l~~~~~ 120 (163)
...++..++....+ +..++..+.....
T Consensus 103 ~~~~~~~~c~~~~~~~v~~l~~il~~~~~ 131 (335)
T KOG2485|consen 103 LESYIKLDCNKDCNKQVSPLLKILTILSE 131 (335)
T ss_pred ccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence 44444444444333 5555544433333
No 384
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.80 E-value=2 Score=35.14 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=46.1
Q ss_pred Eeeecccchhhhhh-ch---hh--hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 9 FWSLLQAGQESFRS-IT---RS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 9 l~d~Dt~G~e~~~~-~~---~~--~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+||||...... +. .. ....+|.+++|+|++... +.....+.+.+.. ..--+|.||.|....
T Consensus 178 vVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~---- 247 (437)
T PRK00771 178 VIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAK---- 247 (437)
T ss_pred EEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCc----
Confidence 44455999654332 11 11 133678999999987642 2223333333322 123567899996331
Q ss_pred HHHHHHHHHHcCCeEEEEcC
Q 031249 83 KEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa 102 (163)
.=-+..+....+.|+.+++.
T Consensus 248 ~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ccHHHHHHHHHCcCEEEEec
Confidence 12344566677888666654
No 385
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=3.4 Score=37.98 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=35.1
Q ss_pred ccCCcEEEEEEECCChH----HH-----HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 28 YRGAAGALLVYDITRRE----TF-----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~----s~-----~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
.+-.+|||+..|+.+.- .. ..+..-+.++.+......|++|++||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 35689999999986521 11 1233345666666666799999999999854
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.08 E-value=5.1 Score=27.93 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=34.3
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
..+++++|++...... ...+...+.+.. + ..-+|.||.|.... .-.+..++...++|+.
T Consensus 112 ~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~----~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 112 KPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR----GGAALSIRAVTGKPIK 170 (173)
T ss_pred CCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC----cchhhhhHHHHCcCeE
Confidence 4899999999865432 223344443332 2 35677799997442 2333346666677644
No 387
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=88.40 E-value=4.5 Score=32.27 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=40.6
Q ss_pred CCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEE
Q 031249 30 GAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLE 99 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~ 99 (163)
..|+++|....+.. .+..+. ..++.+.+ .+-+|-|+.|.|.....++. .+.+.+....+++++|.
T Consensus 133 RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 133 RVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred ceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 47999999986642 222221 23444433 35788889999986644432 23456667788888774
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=88.16 E-value=5.9 Score=32.45 Aligned_cols=63 Identities=13% Similarity=-0.030 Sum_probs=36.9
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
..+.++||.|.... +++....+.+.+.. ...-+|.||.|..... -.+..+....++|+.+++.
T Consensus 213 ~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 213 NPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred CCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc----cHHHHHHHHHCcCEEEEeC
Confidence 56788999998653 23333444444322 1235667999953321 2255666777888666654
No 389
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=87.42 E-value=2 Score=30.31 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=44.9
Q ss_pred eEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 8 FFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
-+..+||++..... ....+..+|.+|++.+.+. .+...+..+++.+......-..+.+|.|+.+..
T Consensus 96 D~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 96 DYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred cceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 34444577643322 5667889999999999774 557777777777766542223568889999864
No 390
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=87.06 E-value=5 Score=32.91 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=50.5
Q ss_pred EEEEEEECC--C--hHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC--CCC
Q 031249 33 GALLVYDIT--R--RETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA--RTA 105 (163)
Q Consensus 33 ~~i~v~d~~--~--~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa--~~~ 105 (163)
|+++..|.+ + ++++..+. ..+++|++.. +|+++++|-.+=.. .-+.+.+.++...++.+++.+++ .+.
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~ig---KPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~ 222 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIG---KPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLRE 222 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHhC---CCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence 444444543 2 45665554 4778887764 89999999876322 23455667778888988888776 344
Q ss_pred CCHHHHHHHHHH
Q 031249 106 QNVEEAFIKTAA 117 (163)
Q Consensus 106 ~~i~~lf~~l~~ 117 (163)
.+|..+++.++-
T Consensus 223 ~DI~~Il~~vLy 234 (492)
T PF09547_consen 223 EDITRILEEVLY 234 (492)
T ss_pred HHHHHHHHHHHh
Confidence 556666655543
No 391
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=86.49 E-value=6.7 Score=29.04 Aligned_cols=62 Identities=13% Similarity=-0.030 Sum_probs=40.6
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+.|+| +|+.-. ......+..+|.+|++...+ ..++..+...++.+.... ..++.++.|+.+.
T Consensus 114 ~viiD--~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 114 YVIID--CPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred EEEEe--CCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence 44444 776432 22345567899999999865 566777777777665543 2367788899874
No 392
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=86.48 E-value=3.3 Score=32.57 Aligned_cols=65 Identities=18% Similarity=0.061 Sum_probs=39.3
Q ss_pred CCcEEEEEEECCChHHHHH-HHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcC--CeEEEEcC
Q 031249 30 GAAGALLVYDITRRETFNH-LSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASA 102 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa 102 (163)
.-|+++-|+|+........ +.. ...++.-. =+|++||.|+.+... .+..+...+..+ .+++.++.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 4688999999876544322 222 33344332 288999999976442 344455555544 45777776
No 393
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=86.21 E-value=0.28 Score=37.61 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=55.2
Q ss_pred eEeeecccc----------hhhhhhchhhhccCCc---EEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCC
Q 031249 8 FFWSLLQAG----------QESFRSITRSYYRGAA---GALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 8 ~l~d~Dt~G----------~e~~~~~~~~~~~~ad---~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
.++.+|.|| .+.+..+...|+.+-+ -++++.|++.+ +...+. .++-+-+ .++|+.+|.||+
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~ 258 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKC 258 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehh
Confidence 344455788 3556667777776443 34444555432 222222 1222222 359999999999
Q ss_pred CCCCCCc----cCHHHHHH----HHH---HcCCeEEEEcCCCCCCHHHHHHHH
Q 031249 74 DLAHRRA----VSKEEGEQ----FAK---ENGLLFLEASARTAQNVEEAFIKT 115 (163)
Q Consensus 74 D~~~~~~----v~~~~~~~----~~~---~~~~~~~~~Sa~~~~~i~~lf~~l 115 (163)
|...... -+...+.. +.. .-..+++.+|+.++.|++.++--+
T Consensus 259 DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i 311 (320)
T KOG2486|consen 259 DKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHI 311 (320)
T ss_pred hhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeeh
Confidence 9643211 01111111 111 112456779999999998876544
No 394
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=86.08 E-value=9.2 Score=26.54 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=50.2
Q ss_pred eeEeeecccchhhhhhchhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCC-----C
Q 031249 7 SFFWSLLQAGQESFRSITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----R 79 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~-----~ 79 (163)
+-+..+|||+.-. ....... ..+|.+|+|.... ..+...+..+++.+.+.. ....-+|.|+.+-..+ .
T Consensus 68 yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~~~ 142 (169)
T cd02037 68 LDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGKKI 142 (169)
T ss_pred CCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCCcc
Confidence 3344555887421 1112222 5789999999766 567777888888887754 1234577998874211 1
Q ss_pred cc-CHHHHHHHHHHcCCeE
Q 031249 80 AV-SKEEGEQFAKENGLLF 97 (163)
Q Consensus 80 ~v-~~~~~~~~~~~~~~~~ 97 (163)
+. .....+.+++.++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~ 161 (169)
T cd02037 143 YIFGKGGGEKLAEELGVPL 161 (169)
T ss_pred cccCCccHHHHHHHcCCCE
Confidence 11 1234566777766653
No 395
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=85.63 E-value=12 Score=28.69 Aligned_cols=93 Identities=16% Similarity=0.028 Sum_probs=52.7
Q ss_pred CccceeeEeeecccchhhhhh-------chhhhccCCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeC-
Q 031249 2 FFSQESFFWSLLQAGQESFRS-------ITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNK- 72 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~-------~~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK- 72 (163)
|+|.++|+.| .||.-.-.+ ..-...+.||.++.|.|++..+.-+. +...++.+--+.+..+|-|.+--|
T Consensus 106 y~ga~IQllD--LPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk 183 (364)
T KOG1486|consen 106 YNGANIQLLD--LPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKK 183 (364)
T ss_pred ecCceEEEec--CcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeec
Confidence 5788899988 587432221 23446789999999999998765543 344555553233333444444222
Q ss_pred CCCC------CCCccCHHHHHHHHHHcCCe
Q 031249 73 CDLA------HRRAVSKEEGEQFAKENGLL 96 (163)
Q Consensus 73 ~D~~------~~~~v~~~~~~~~~~~~~~~ 96 (163)
..-. .-...++..+..+++++.+.
T Consensus 184 ~gGi~f~~T~~lT~~~ek~i~~ILheykI~ 213 (364)
T KOG1486|consen 184 TGGISFNTTVPLTHCDEKLIYTILHEYKIH 213 (364)
T ss_pred cCCeEEeeeeccccccHHHHHHHHHHHeec
Confidence 2110 01224456666677777654
No 396
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.03 E-value=3.3 Score=33.48 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=29.7
Q ss_pred ccceeeEeeecccchhh-----hhhchhh-hccCCcEEEEEEECCChHHHHHH
Q 031249 3 FSQESFFWSLLQAGQES-----FRSITRS-YYRGAAGALLVYDITRRETFNHL 49 (163)
Q Consensus 3 ~~~~~~l~d~Dt~G~e~-----~~~~~~~-~~~~ad~~i~v~d~~~~~s~~~~ 49 (163)
..+++-++.+||+|..+ |..|... -.-.-|-+|||.|++-.+.-++.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 34577788888999533 3333222 12357999999999876654443
No 397
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=6.8 Score=31.30 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCcEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEcCCC
Q 031249 30 GAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEASART 104 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~ 104 (163)
..|+++|.+..+-. .+..+. ..++.+. ..+.+|-|+-|.|.....++. ...+.+-+...++++|......
T Consensus 129 RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 129 RVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred ceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 68999999987642 122221 2233332 347788899999986644432 2345566777788866655543
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=84.33 E-value=2.9 Score=28.79 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=33.3
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+-+..+||+|..... ..++..||-+|++....-.+.+.-+ ...+.+. -=+++.||+|
T Consensus 92 ~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~~-----~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI---KAGIMEI-----ADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh---hhhHhhh-----cCEEEEeCCC
Confidence 344555599955322 4588999999999987632222211 1122221 2378899987
No 399
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=84.20 E-value=7.3 Score=32.89 Aligned_cols=69 Identities=7% Similarity=0.008 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249 47 NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (163)
..+..+++.+++ .++|+||.+|+.....+ ...+.+.+++.+.++.+..+. ++-|+|-.++.+.+++.+.
T Consensus 388 ~NL~~Hi~n~~~---fg~pvVVaiN~F~~Dt~--~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 388 ANLLHHIGTVKK---SGINPVVCINAFYTDTH--AEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHHHHHH---cCCCeEEEeCCCCCCCH--HHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 334445555554 46999999999875333 234667788888888755443 5667788888777776553
No 400
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.97 E-value=6.9 Score=24.71 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCeEEEEc
Q 031249 83 KEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~S 101 (163)
...+...++..++|++.+.
T Consensus 64 ~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 64 MWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHHHcCCcEEEEC
Confidence 4666677777777766654
No 401
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=83.95 E-value=7.1 Score=32.60 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249 47 NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (163)
..+...++.+++ .+.|+||.+|+.....+ -..+.+++++.+.|..+..+. ++-|.|-.++.+.+++.+.
T Consensus 343 ~NL~~Hi~n~~~---fg~p~VVaiN~F~~Dt~--~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 343 ANLRKHIENIKK---FGVPVVVAINKFSTDTD--AELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHHHH---cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 444555555554 46999999999875333 234667788899998866553 5667888888877776553
No 402
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=83.86 E-value=8.6 Score=28.57 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=41.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHH---HhcCCCCeEEEEeeCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR---QHANPNMSIMLVGNKCD 74 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~---~~~~~~~p~ilv~nK~D 74 (163)
+-+..+||||... .+....+..+|.+|+.+..+ ..++..+..++..+. +..+++.|..++.|.++
T Consensus 84 yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 84 FDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 3444555898543 44566778899999888765 344544444443332 22345678889999986
No 403
>CHL00175 minD septum-site determining protein; Validated
Probab=83.81 E-value=9.9 Score=28.80 Aligned_cols=62 Identities=8% Similarity=-0.082 Sum_probs=39.4
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+|||+.- .......+..+|.+|+|.+.+ ..++..+..+++.+.+... ..+.+|.|+.+.
T Consensus 129 ~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~--~~~~lvvN~~~~ 190 (281)
T CHL00175 129 YILIDCPAGI--DVGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI--YNVKLLVNRVRP 190 (281)
T ss_pred EEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC--CceEEEEeccCh
Confidence 3444477643 223344557799999998755 5667777777777665331 345678899874
No 404
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=83.70 E-value=13 Score=26.32 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=58.0
Q ss_pred ccCCcEEEEEEECCCh-------HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEE
Q 031249 28 YRGAAGALLVYDITRR-------ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 100 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~-------~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~ 100 (163)
++....=.+++|.++- +-...+..|++++++... ...++||-|-.-... .....++..+.+..+++++.-
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH 112 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC-CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence 5555666677777651 123567788999987642 225888888764322 345788899999999998888
Q ss_pred cCCCCCCHHHHHHHH
Q 031249 101 SARTAQNVEEAFIKT 115 (163)
Q Consensus 101 Sa~~~~~i~~lf~~l 115 (163)
.++...+..++...+
T Consensus 113 ~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 113 RAKKPGCFREILKYF 127 (168)
T ss_pred CCCCCccHHHHHHHH
Confidence 888886666665554
No 405
>PRK10818 cell division inhibitor MinD; Provisional
Probab=83.04 E-value=8 Score=29.07 Aligned_cols=64 Identities=9% Similarity=-0.072 Sum_probs=38.9
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc----C--CCCeEEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA----N--PNMSIMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~--~~~p~ilv~nK~D~ 75 (163)
+..+|+|+.-.. .....+..+|.+|++.+.+ ..++..+..+++.+.... + .+.+..++.|+.+.
T Consensus 116 ~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 116 FIVCDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred EEEEeCCCCccH--HHHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 344447654432 2344568899999999876 456666666666654321 1 12345778898874
No 406
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=82.94 E-value=7.6 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=26.4
Q ss_pred ecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHH
Q 031249 12 LLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE 54 (163)
Q Consensus 12 ~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~ 54 (163)
+|+++... ......+..+|.+|++.+.+ ..++..+..+++
T Consensus 45 iD~p~~~~--~~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 45 IDTPPSLG--LLTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred EeCcCCCC--HHHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 34776432 22346778899999999865 556766666665
No 407
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=82.51 E-value=15 Score=27.66 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=35.5
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeE-EEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQH-ANPNMSI-MLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~-ilv~nK~D~ 75 (163)
+..+||+|...... ....+..||.+|++...+ ..++..+...++.+... ...+.++ .+|.|+.+.
T Consensus 118 ~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 118 VILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred EEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 44445876432211 223477899999998764 34444444444444322 1234543 467899874
No 408
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.16 E-value=9.4 Score=31.26 Aligned_cols=85 Identities=6% Similarity=-0.090 Sum_probs=45.5
Q ss_pred eeEeeecccchhhhhh-c----hhh-hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCc
Q 031249 7 SFFWSLLQAGQESFRS-I----TRS-YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 80 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~-~----~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~ 80 (163)
+.+..+||||...... + ... ...+.|-++||.|++-.+.- ....+.+.+.. .+--+|.||.|.....
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~---~~~g~IlTKlD~~arg- 255 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV---DVGSVIITKLDGHAKG- 255 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc---CCcEEEEECccCCCCc-
Confidence 3445555999543322 1 111 12356889999998754322 22334444332 3567889999974321
Q ss_pred cCHHHHHHHHHHcCCeEEEEc
Q 031249 81 VSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~S 101 (163)
=-+..+....+.|+..++
T Consensus 256 ---G~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 256 ---GGALSAVAATKSPIIFIG 273 (429)
T ss_pred ---cHHhhhHHHHCCCeEEEc
Confidence 112334555676655554
No 409
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=82.13 E-value=19 Score=27.03 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=44.4
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCCCCCCccCHHHH
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSI-MLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-ilv~nK~D~~~~~~v~~~~~ 86 (163)
+..+||+|.-.... ....+..||.+|++... +..++..+...++.+.+.. ..+.++ -++.|+.+. ....
T Consensus 120 ~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~ 190 (270)
T PRK13185 120 VILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLI 190 (270)
T ss_pred EEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHH
Confidence 33444766432221 22346779999999965 4555666555555544321 245664 478899763 2334
Q ss_pred HHHHHHcCCeE
Q 031249 87 EQFAKENGLLF 97 (163)
Q Consensus 87 ~~~~~~~~~~~ 97 (163)
..+.+.++.++
T Consensus 191 ~~~~~~~g~~v 201 (270)
T PRK13185 191 DKFNEAVGLKV 201 (270)
T ss_pred HHHHHHcCCCE
Confidence 55666666543
No 410
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=81.71 E-value=7.4 Score=29.08 Aligned_cols=102 Identities=9% Similarity=0.049 Sum_probs=59.0
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHH--HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL--SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 84 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~ 84 (163)
+.+..+||.|.... +....+..+|.+|+=.-.+..+.-+.+ ..|+.++.+.....+|.-|+.|+..-.. ......
T Consensus 84 ~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence 33444458874321 234566789999988876644433332 3355666554556799999999987321 111112
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 031249 85 EGEQFAKENGLLFLEASARTAQNVEEAFI 113 (163)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~ 113 (163)
.+..+.. +++++.+......-..++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2233333 58888877766555666665
No 411
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=80.24 E-value=21 Score=26.80 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=37.2
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeE-EEEeeCCCC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSI-MLVGNKCDL 75 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-ilv~nK~D~ 75 (163)
+-+..+||+|.-....+ ...+..||.+|++... +..++..+...++.+.+.. ..+.++ .+|.|+.+.
T Consensus 116 yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 116 YDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred CCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 33444557764321111 2346789999998765 4455655555555544322 234543 577899874
No 412
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=79.49 E-value=6 Score=30.33 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=25.3
Q ss_pred CeEEEEeeCCC--CCCCCccCHHHHHHHHHHcCCeEEEEcCCC
Q 031249 64 MSIMLVGNKCD--LAHRRAVSKEEGEQFAKENGLLFLEASART 104 (163)
Q Consensus 64 ~p~ilv~nK~D--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 104 (163)
+|+++++|+.| ... ..-.......++...+.+++.+||.-
T Consensus 196 KP~i~v~N~~e~d~~~-~~~~~~~~~~~~~~~~~~~i~~sa~~ 237 (274)
T cd01900 196 KPVLYVANVSEDDLAN-GNNKVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred CCceeecccCHHHhcc-ccHHHHHHHHHHhcCCCeEEEeeHHH
Confidence 79999999988 321 11122334455556677889999863
No 413
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.22 E-value=21 Score=25.76 Aligned_cols=63 Identities=17% Similarity=-0.016 Sum_probs=38.2
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
..+-+++|.+++... +++... ....+.. -+-=+|.||.|... ..-.+..++...+.|+-.++.
T Consensus 113 ~~~~~~LVlsa~~~~--~~~~~~-~~~~~~~---~~~~lIlTKlDet~----~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 113 NPDEVHLVLSATMGQ--EDLEQA-LAFYEAF---GIDGLILTKLDETA----RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp SSSEEEEEEEGGGGG--HHHHHH-HHHHHHS---STCEEEEESTTSSS----TTHHHHHHHHHHTSEEEEEES
T ss_pred CCccceEEEecccCh--HHHHHH-HHHhhcc---cCceEEEEeecCCC----CcccceeHHHHhCCCeEEEEC
Confidence 567899999987653 233322 2222322 12356699999633 234566677788988766654
No 414
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=79.05 E-value=15 Score=31.16 Aligned_cols=68 Identities=7% Similarity=-0.035 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHH-cCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249 48 HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEAS--ARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 48 ~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~-~~~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (163)
.+..+++.+++ .++|+||.+|+.....+. ..+.+.+++.+ .+..+..+. ++-|+|-.++.+.+++.+.
T Consensus 381 NL~~Hi~n~~~---fg~pvVVaiN~F~~Dt~~--Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 381 NLKWHINNVAQ---YGLPVVVAINRFPTDTDE--ELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHHHHH---cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 44445555554 469999999998753322 34566778887 566755554 5777888888877776553
No 415
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=77.97 E-value=13 Score=30.67 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=64.1
Q ss_pred chhhhhhc-hhhhccCCcEEEEEEECCC--------------------hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 16 GQESFRSI-TRSYYRGAAGALLVYDITR--------------------RETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 16 G~e~~~~~-~~~~~~~ad~~i~v~d~~~--------------------~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
|.|+|-.+ .+..=..-|++++|-.+-. ..-|..+...++.+++ .++|++|.+||.-
T Consensus 304 GaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikk---fgvp~VVAIN~F~ 380 (554)
T COG2759 304 GAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKK---FGVPVVVAINKFP 380 (554)
T ss_pred chhhhcceeccccCCCCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHH---cCCCeEEEeccCC
Confidence 35665442 2222335688888876521 1223344445555554 4699999999986
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEE--cCCCCCCHHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEA--SARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~--Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
... +-....+++++.+.+.++..+ =++-++|-.++-+.++..+.+
T Consensus 381 tDt--~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 381 TDT--EAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred CCC--HHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 432 233466788899999875443 468888988888888877765
No 416
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=77.41 E-value=19 Score=24.28 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=47.6
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 109 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (163)
++|++ +++..+..+...+...++.+++.....+++++.|+..+ ++ ....++.|+.-+. . .+.++.
T Consensus 53 ~adii--~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~---------~~-~~~l~~~Gvd~~~-~--~gt~~~ 117 (132)
T TIGR00640 53 DVHVV--GVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP---------QD-FDELKEMGVAEIF-G--PGTPIP 117 (132)
T ss_pred CCCEE--EEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh---------Hh-HHHHHHCCCCEEE-C--CCCCHH
Confidence 45554 44556666677788888888776534556666555532 11 1235567876332 2 344788
Q ss_pred HHHHHHHHHHHHH
Q 031249 110 EAFIKTAAKILQN 122 (163)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (163)
++...+.+.+..+
T Consensus 118 ~i~~~l~~~~~~~ 130 (132)
T TIGR00640 118 ESAIFLLKKLRKL 130 (132)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888866554
No 417
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.09 E-value=27 Score=29.66 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=48.2
Q ss_pred eeEeeecccchhhhhhc-------hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 7 SFFWSLLQAGQESFRSI-------TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~-------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
+.+..+||+|....... +... . ....++|++.+. +..++...++.+... .+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~-- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG-- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc--
Confidence 34555669995332211 1111 1 234567777664 345555555555442 35678999999732
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcC
Q 031249 80 AVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
..-.+..+....++++..++.
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEeC
Confidence 234556677778888766654
No 418
>PLN02759 Formate--tetrahydrofolate ligase
Probab=76.92 E-value=15 Score=31.45 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcC-CeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249 49 LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEAS--ARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 49 ~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~-~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (163)
+...++.+++ .++|+||.+|+.....+ ...+.+++++.+.| ..+..+. ++-|+|-.++.+.+++.+.
T Consensus 439 L~~Hi~n~~~---fg~pvVVaiN~F~~Dt~--~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 439 LARHIENTKS---YGVNVVVAINMFATDTE--AELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHHHHH---cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 3444555544 46999999999875332 23466778888889 4755554 5667888888877776553
No 419
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=75.83 E-value=8.1 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=13.8
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 031249 88 QFAKENGLLFLEASARTAQNVEEAFIKT 115 (163)
Q Consensus 88 ~~~~~~~~~~~~~Sa~~~~~i~~lf~~l 115 (163)
...+..+++++.+|++++.+++++.+.+
T Consensus 6 ~~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 3344455555555555555555554433
No 420
>PRK13695 putative NTPase; Provisional
Probab=75.66 E-value=24 Score=24.55 Aligned_cols=89 Identities=8% Similarity=0.091 Sum_probs=47.2
Q ss_pred cchhhhhh-chhhhccCCcEEEEEEE---CCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHH
Q 031249 15 AGQESFRS-ITRSYYRGAAGALLVYD---ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA 90 (163)
Q Consensus 15 ~G~e~~~~-~~~~~~~~ad~~i~v~d---~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~ 90 (163)
.|.+++.. +....++.+|. +++| ..+..+ ..+.+.+......+.|++++.+|... ......+.
T Consensus 80 sgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~ 146 (174)
T PRK13695 80 EDLERIGIPALERALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIK 146 (174)
T ss_pred HHHHHHHHHHHHhccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHh
Confidence 34444433 34445567777 5677 322222 12233333332345899999998532 12233344
Q ss_pred HHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 91 KENGLLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 91 ~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
...+..++++ +.+|-+++.+.+++.+
T Consensus 147 ~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 147 SRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred ccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 4556667776 4456667777776654
No 421
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=75.36 E-value=2 Score=36.02 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=54.9
Q ss_pred chhhhhhc-hhhhccCCcEEEEEEECC----------------Ch----HHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 16 GQESFRSI-TRSYYRGAAGALLVYDIT----------------RR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 16 G~e~~~~~-~~~~~~~ad~~i~v~d~~----------------~~----~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
|.|+|-.+ .+..=-.-|++++|-.+- |. .-+..+..+++.+++ .++|+||.+|+..
T Consensus 306 GaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~---fGvpvVVAIN~F~ 382 (557)
T PF01268_consen 306 GAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKK---FGVPVVVAINRFP 382 (557)
T ss_dssp HHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHC---TT--EEEEEE--T
T ss_pred ChhhhcCccchhcccCcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHh---cCCCeEEEecCCC
Confidence 35666542 222223468888887652 11 124444455555544 5699999999987
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEc--CCCCCCHHHHHHHHHHHHH
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEAS--ARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (163)
...+. ..+.+.+++++.|+++..+. ++-|+|-.++.+.+++.+.
T Consensus 383 tDT~a--Ei~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~e 428 (557)
T PF01268_consen 383 TDTDA--EIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEACE 428 (557)
T ss_dssp TS-HH--HHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-H
T ss_pred CCCHH--HHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHhh
Confidence 53322 23556677777888855443 5667888888888877773
No 422
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.16 E-value=6.5 Score=31.97 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=18.5
Q ss_pred CccceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCCh
Q 031249 2 FFSQESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRR 43 (163)
Q Consensus 2 ~~~~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~ 43 (163)
++..++.+||.| +++++.--....+-+--..|.|-++.
T Consensus 488 igSmRlLLWdCD----DR~YSyYvevStNq~eW~mvvDRtn~ 525 (620)
T KOG4350|consen 488 IGSMRLLLWDCD----DRFYSYYVEVSTNQDEWVMVVDRTNE 525 (620)
T ss_pred eeeeeEEEEecC----CCceeEEEEEEeCchheEEeeecccc
Confidence 445556666633 33443333333445555566665554
No 423
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.15 E-value=1.1 Score=34.21 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=25.8
Q ss_pred CCeEEEEeeCCCCCCCCc-----cCHHHHHHHHHHcCCeEEEEcCC
Q 031249 63 NMSIMLVGNKCDLAHRRA-----VSKEEGEQFAKENGLLFLEASAR 103 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~ 103 (163)
++|+++|+.|+|.-..-+ -...-.+.++..+|...++.|.+
T Consensus 190 P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSsk 235 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSK 235 (363)
T ss_pred CCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 689999999999743211 11223445566677666666665
No 424
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=73.86 E-value=15 Score=26.32 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=31.9
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
...+.+|.+|+|.+... .+...+...++.+.+.. ...+-+|.||.+..
T Consensus 146 ~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~~--~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 146 IIARACDASILVTDAGE-IKKRDVQKAKEQLEQTG--SNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhCC--CCEEEEEEeCcccc
Confidence 35567899999998753 34555666666665432 13456789999863
No 425
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=73.56 E-value=7.3 Score=27.89 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=35.6
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECC---ChHHHHH-HHHHHHHHHHhcCCCCeEEEEe
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT---RRETFNH-LSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~---~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
...++.+-.+|.-+.......++...|+-++++|+. +.+.|.. +..+++.+++.. |.+|++++-
T Consensus 33 ~~~~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h-P~tPIllv~ 100 (178)
T PF14606_consen 33 GLDVINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH-PDTPILLVS 100 (178)
T ss_dssp T-EEEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT--SSS-EEEEE
T ss_pred CCCeEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 345666666887777777777777666666666642 3344543 455667676644 789998884
No 426
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=72.87 E-value=14 Score=29.56 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.1
Q ss_pred CCeEEEEeeCCCCCCCCccC--HHHHHHHHHHcCCeEEEEcCC
Q 031249 63 NMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLEASAR 103 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~ 103 (163)
.+|+++++||.|...... . ......++...+.+++.+||.
T Consensus 206 ~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 206 AKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred cCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHH
Confidence 589999999999754221 2 456667777778889999986
No 427
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=72.79 E-value=28 Score=29.80 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHH-HcC-CeEEEEc--CCCCCCHHHHHHHHHHHH
Q 031249 48 HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENG-LLFLEAS--ARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 48 ~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~-~~~-~~~~~~S--a~~~~~i~~lf~~l~~~~ 119 (163)
.+..+++.+++ .++|+||.+|+.....+ ...+.+++++. +.| ..+..+. ++-|.|-.++.+.+++.+
T Consensus 425 NL~~Hien~~~---fgvpvVVAIN~F~tDT~--~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~ 495 (625)
T PTZ00386 425 NLQRHIQNIRK---FGVPVVVALNKFSTDTD--AELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVT 495 (625)
T ss_pred HHHHHHHHHHH---cCCCeEEEecCCCCCCH--HHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHH
Confidence 34445555544 46999999999875332 23456777888 778 4655544 566778888877777655
No 428
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=72.47 E-value=38 Score=25.30 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=55.9
Q ss_pred ccCCcEEEEEEECCChHHHHHHH-HHH--HHHHHhcCCCCeEEEEeeCCCCCCCC--c-cCHHHHHHHHHHcCCeEEEEc
Q 031249 28 YRGAAGALLVYDITRRETFNHLS-SWL--EDARQHANPNMSIMLVGNKCDLAHRR--A-VSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~-~~~--~~l~~~~~~~~p~ilv~nK~D~~~~~--~-v~~~~~~~~~~~~~~~~~~~S 101 (163)
+++.|.+++|+=.+-...--.+. .|- ..+.......+-.||-.|..-..... . ...++.......+|++.++|.
T Consensus 76 ~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VD 155 (227)
T cd02011 76 FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVE 155 (227)
T ss_pred hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEEC
Confidence 56677777777433221111111 121 12222221233334446654332222 2 335677788888999988886
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhccccccc
Q 031249 102 ARTAQNVEEAFIKTAAKILQNIQEGALDAVN 132 (163)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~ 132 (163)
-.+-..+.+.+...+..+++.+...+.+.+.
T Consensus 156 G~D~~av~~~~a~a~~~~~~~i~~~~~~~~~ 186 (227)
T cd02011 156 GDDPETMHQAMAATLDWAIEEIKAIQKRARE 186 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554556667777777777766666655553
No 429
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=71.43 E-value=25 Score=22.98 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=31.9
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
...-..+++..+|++.+ ..........+..+++.. .++|++++.++.
T Consensus 31 ~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~~ 77 (115)
T PF03709_consen 31 AIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERN-FGIPVFLLAERD 77 (115)
T ss_dssp HHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS-TT-EEEEEESCC
T ss_pred HHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 33334566666666665 555566677888888766 789999999865
No 430
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=70.79 E-value=46 Score=25.59 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=54.6
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCe-EEEEeeCCCCCCC--------
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMS-IMLVGNKCDLAHR-------- 78 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p-~ilv~nK~D~~~~-------- 78 (163)
+..+||+|.-....+ ...+..||.+|++...+ ..++..+...++.+.... .++.+ .-++.|+.+....
T Consensus 118 ~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~~~~ 195 (290)
T CHL00072 118 IILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVEAC 195 (290)
T ss_pred EEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHHHHc
Confidence 344447664211111 12356799999998764 455665555554443321 23333 3478899873110
Q ss_pred -----CccCHHHHHHHHHHcCCeEEEEcCCCCCC---HHHHHHHHHHHHHHH
Q 031249 79 -----RAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKILQN 122 (163)
Q Consensus 79 -----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~---i~~lf~~l~~~~~~~ 122 (163)
..++......-+...+.++++.... ... ...-|..|.+++..+
T Consensus 196 ~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 196 PMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred CCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhC
Confidence 0011111222233344455555432 222 456677777777554
No 431
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=70.71 E-value=13 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=37.1
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCC
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 73 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 73 (163)
....+|-++.+|+.....--..+...++-+++++.+++|+.+|-|-.
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 45689999999998876655666677777888887889999886654
No 432
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.02 E-value=45 Score=27.99 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=51.5
Q ss_pred ceeeEeeecccchhhhhh-c---hhh--hccCCcEEEEEEEC-CChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 5 QESFFWSLLQAGQESFRS-I---TRS--YYRGAAGALLVYDI-TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~-~---~~~--~~~~ad~~i~v~d~-~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
-.+.|.| |||...-.. + ... -...-|.+|||-.+ .--++...+..+-+.+.....+..-=-++++|+|...
T Consensus 467 fDVvLiD--TAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 467 FDVVLID--TAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred CCEEEEe--ccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 3455555 999644322 1 111 24578999999864 3345666666666666555433333356799999755
Q ss_pred CCccCHHHHHHHHHHcCCeEEEEc
Q 031249 78 RRAVSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~S 101 (163)
++ + -.+..+....+.|++++-
T Consensus 545 d~-v--g~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 545 DK-V--GAAVSMVYITGKPILFVG 565 (587)
T ss_pred hH-H--HHHhhheeecCCceEEEe
Confidence 32 1 122223334467776663
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=68.91 E-value=50 Score=25.27 Aligned_cols=85 Identities=9% Similarity=-0.051 Sum_probs=46.7
Q ss_pred eEeeecccchhhhhh-c---hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 8 FFWSLLQAGQESFRS-I---TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~-~---~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+||+|.-.... + +..++ ...+-++||.|++.. .+++..+++.+... .+--+|.||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCCC---
Confidence 344445999643221 1 11222 234678999997643 23444455555431 234678999996431
Q ss_pred CHHHHHHHHHHcCCeEEEEcC
Q 031249 82 SKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa 102 (163)
.=.+..++...++|+..++.
T Consensus 227 -~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEeC
Confidence 23344566677888666653
No 434
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.55 E-value=63 Score=26.05 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=45.8
Q ss_pred eeeEeeecccchhhhhhc----hhhh--ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CC----CeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PN----MSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~----~~~~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~----~p~ilv~nK~D 74 (163)
.+.| +||+|...+... .... .....-.++|.+++.. .+.+.+.+..+..... +. -+-=+|.||.|
T Consensus 217 DlVL--IDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 217 HMVL--IDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CEEE--EcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 4445 459995433221 1111 1234556889988764 2233333333333211 00 12356789999
Q ss_pred CCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 75 LAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
... ..=.+..++...++++..++.
T Consensus 293 Et~----~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 293 EAS----NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred cCC----CccHHHHHHHHHCcCeEEEec
Confidence 633 233455567777888666654
No 435
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.90 E-value=64 Score=25.63 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=49.2
Q ss_pred cceeeEeeecccchhhhhh-------chhhhccC-----CcEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 4 SQESFFWSLLQAGQESFRS-------ITRSYYRG-----AAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 4 ~~~~~l~d~Dt~G~e~~~~-------~~~~~~~~-----ad~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
+..+.|.| |||.-.-.. .+...++. -|-++++.|++-.+ ++..+ +.+.+..+ ---++.
T Consensus 221 ~~DvvliD--TAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA----k~F~eav~---l~GiIl 291 (340)
T COG0552 221 GIDVVLID--TAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA----KIFNEAVG---LDGIIL 291 (340)
T ss_pred CCCEEEEe--CcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH----HHHHHhcC---CceEEE
Confidence 44566666 999422111 12222333 34488888987654 34443 23333221 125679
Q ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 031249 71 NKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 111 (163)
Q Consensus 71 nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (163)
||.|-....-+ +..++.++++|+.++.. |++++++
T Consensus 292 TKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 292 TKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 99995432222 22366778999777754 3444444
No 436
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=63.72 E-value=35 Score=24.99 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=36.7
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDL 75 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D~ 75 (163)
.+.|+| |++... ......+..+|.+|++.+.+ ..++..+...++..... +.+ +.++.|+.+.
T Consensus 110 D~VIiD--~p~~~~--~~~~~~l~~ad~vliv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 110 DFLLID--APAGLE--RDAVTALAAADELLLVVNPE-ISSITDALKTKIVAEKL---GTAILGVVLNRVTR 172 (251)
T ss_pred CEEEEe--CCCccC--HHHHHHHHhCCeEEEEECCC-CchHHHHHHHHHHHHhc---CCceEEEEEECCCc
Confidence 345555 776433 23344566799999999875 34455544443333322 233 5688999875
No 437
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.56 E-value=71 Score=26.28 Aligned_cols=84 Identities=11% Similarity=-0.010 Sum_probs=46.0
Q ss_pred Eeeecccchhhhhh--c--hhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 9 FWSLLQAGQESFRS--I--TRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 9 l~d~Dt~G~e~~~~--~--~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+..+||+|...... + +..++ ...|.++||.|++-. .+++..+++.+... .+-=+|+||.|... .
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~----k 392 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA----S 392 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC----C
Confidence 34445999533221 1 12222 235678899887533 23444555555432 13367799999643 2
Q ss_pred HHHHHHHHHHcCCeEEEEcC
Q 031249 83 KEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa 102 (163)
.=.+..++...++|+..++.
T Consensus 393 ~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 393 SGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred ccHHHHHHHHHCcCEEEEeC
Confidence 23344566777888666553
No 438
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=63.53 E-value=44 Score=22.68 Aligned_cols=82 Identities=16% Similarity=0.036 Sum_probs=47.8
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 109 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (163)
++|++.+ +.....+...+..+++.+++...+++++++.| ..-.. .-...+....++..|+.-++-. +..++
T Consensus 54 ~~d~V~l--S~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG-~~~~~---~~~~~~~~~~l~~~G~~~vf~~---~~~~~ 124 (137)
T PRK02261 54 DADAILV--SSLYGHGEIDCRGLREKCIEAGLGDILLYVGG-NLVVG---KHDFEEVEKKFKEMGFDRVFPP---GTDPE 124 (137)
T ss_pred CCCEEEE--cCccccCHHHHHHHHHHHHhcCCCCCeEEEEC-CCCCC---ccChHHHHHHHHHcCCCEEECc---CCCHH
Confidence 5565555 44444566777888888877654556555555 33221 1234555666777887633322 23678
Q ss_pred HHHHHHHHHHH
Q 031249 110 EAFIKTAAKIL 120 (163)
Q Consensus 110 ~lf~~l~~~~~ 120 (163)
++..+|.+.+.
T Consensus 125 ~i~~~l~~~~~ 135 (137)
T PRK02261 125 EAIDDLKKDLN 135 (137)
T ss_pred HHHHHHHHHhc
Confidence 88777766553
No 439
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=63.48 E-value=6.7 Score=27.69 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCcEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHc
Q 031249 30 GAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 93 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~ 93 (163)
..+.+|.|+|+........+.. +.+++... =++++||+|+.+.. ...+...+..++.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSDE-QKIERVREMIREL 170 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH---HHHHHHHHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCChh-hHHHHHHHHHHHH
Confidence 4689999999977543344433 33333322 27889999985532 1224444455443
No 440
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=63.33 E-value=65 Score=24.86 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=48.3
Q ss_pred cCCcEEEEEEECCChHHHHHH---HHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc----
Q 031249 29 RGAAGALLVYDITRRETFNHL---SSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS---- 101 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~---~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S---- 101 (163)
..||.+|++...+ ..++..+ ...++.+.+....-.++-+|.|+.+.. ..+.++++.++++++..-
T Consensus 146 ~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~-------~~~~~~~~~~~i~vLg~IP~d~ 217 (296)
T TIGR02016 146 SLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS-------GEAQAFAREVGIPVLAAIPADE 217 (296)
T ss_pred hhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc-------cHHHHHHHHcCCCeEEECCCCH
Confidence 4689888887653 3455443 344444444321123566889998741 134556666775532210
Q ss_pred ------C------CC-CCCHHHHHHHHHHHHHHHHh
Q 031249 102 ------A------RT-AQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 102 ------a------~~-~~~i~~lf~~l~~~~~~~~~ 124 (163)
. .. .....+.|..+.+.+.....
T Consensus 218 ~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 218 ELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred HHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 0 01 11266788888888876544
No 441
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=62.40 E-value=63 Score=25.04 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=46.1
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHH
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 86 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~ 86 (163)
+.|+| +|+.. .......+..+|.+|+|.+.+ ..++..+..+++.+.... + .+.++.|.... ..+..++
T Consensus 207 ~VIID--~p~~~--~~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~~-~--~~~lVv~~~~~---~~~~~~~- 274 (322)
T TIGR03815 207 LVVVD--LPRRL--TPAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRRN-P--DLRLVVRGPAP---AGLDPEE- 274 (322)
T ss_pred EEEEe--CCCCC--CHHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhhC-C--CeEEEEeCCCC---CCCCHHH-
Confidence 44445 78653 333566788999999999754 567777777777776543 2 34445565321 2233333
Q ss_pred HHHHHHcCCeEE
Q 031249 87 EQFAKENGLLFL 98 (163)
Q Consensus 87 ~~~~~~~~~~~~ 98 (163)
+.+.++.+++
T Consensus 275 --i~~~lg~~v~ 284 (322)
T TIGR03815 275 --IAESLGLPLL 284 (322)
T ss_pred --HHHHhCCCce
Confidence 4444566644
No 442
>PLN03194 putative disease resistance protein; Provisional
Probab=62.34 E-value=57 Score=23.60 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=60.9
Q ss_pred hhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC---C--CCccCHHHHHHHHHH
Q 031249 18 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA---H--RRAVSKEEGEQFAKE 92 (163)
Q Consensus 18 e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~---~--~~~v~~~~~~~~~~~ 92 (163)
+....-+...++.+...|.|++.+...|-..+.++...+.. ..+++-|.-+.|-. . ......+++..|...
T Consensus 68 ~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~----~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~A 143 (187)
T PLN03194 68 DKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMES----KKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWA 143 (187)
T ss_pred CcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHc----CCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHH
Confidence 44444455678999999999998877777666666555532 24566676665521 1 111234555555433
Q ss_pred c----CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 031249 93 N----GLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 130 (163)
Q Consensus 93 ~----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~ 130 (163)
+ ++.=+.....++ +=.++.+.++..+.+.+.+.+.++
T Consensus 144 L~~va~l~G~~~~~~~~-~e~e~i~~iv~~v~k~l~~~~~~~ 184 (187)
T PLN03194 144 LEEAKYTVGLTFDSLKG-NWSEVVTMASDAVIKNLIELEEEK 184 (187)
T ss_pred HHHHhccccccCCCCCC-CHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 222121222222 236777777777777766655443
No 443
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.30 E-value=66 Score=26.35 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=50.3
Q ss_pred Eeeecccchhhhh----hchhhhcc---CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 9 FWSLLQAGQESFR----SITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 9 l~d~Dt~G~e~~~----~~~~~~~~---~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
+..+||+|..... .....+++ .-.-+++|.+++-. ..++...+..+... + +--++.||.|...
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~---- 371 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS---- 371 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc----
Confidence 3444599963332 11222332 23467788887643 23444444444321 1 2257899999633
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 031249 82 SKEEGEQFAKENGLLFLEASARTAQNV-EEAFI 113 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf~ 113 (163)
..-.+..++...++++..++. |.+| +++..
T Consensus 372 ~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~ 402 (424)
T PRK05703 372 SLGSILSLLIESGLPISYLTN--GQRVPDDIKV 402 (424)
T ss_pred cccHHHHHHHHHCCCEEEEeC--CCCChhhhhh
Confidence 234566778888988766654 3443 44433
No 444
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=61.67 E-value=58 Score=25.49 Aligned_cols=90 Identities=10% Similarity=0.068 Sum_probs=46.6
Q ss_pred ecccchhhhhhchhhhcc--------CCcEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccC
Q 031249 12 LLQAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 82 (163)
Q Consensus 12 ~Dt~G~e~~~~~~~~~~~--------~ad~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~ 82 (163)
+.|.|.-.-..+...++. .-++++.|+|+.+...... ......++... =+|++||+|+...
T Consensus 96 IEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~~---- 165 (318)
T PRK11537 96 IECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAGE---- 165 (318)
T ss_pred EECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCCH----
Confidence 447886544444433321 2588999999875432211 11122333332 2788999998652
Q ss_pred HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHH
Q 031249 83 KEEGEQFAKENG--LLFLEASARTAQNVEEAF 112 (163)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf 112 (163)
.+......+..+ .+++.+. ........+|
T Consensus 166 ~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 166 AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 244555555443 4465543 2223444444
No 445
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=60.81 E-value=19 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 95 LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
++++..||+++.|+..+++.+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 4588899999999999999987653
No 446
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=60.30 E-value=45 Score=25.69 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 120 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (163)
-++++.|-||+|. ++.++...++++.+- +-+|+...-|++.+++.+-.++.
T Consensus 238 Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 3799999999996 678888888876553 44677788899988888776653
No 447
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=60.11 E-value=10 Score=24.88 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=17.6
Q ss_pred EeeCCCCCCCCccCHHHHHHHHHHcC-CeEEEEcCC
Q 031249 69 VGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASAR 103 (163)
Q Consensus 69 v~nK~D~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 103 (163)
++||.|++. ..+.+..+...+. ..++++||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999743 4566666666554 568888874
No 448
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.00 E-value=22 Score=23.41 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
++|.+.+.+ .+......+..+++.+++.....+++++.|+.
T Consensus 50 ~~d~V~iS~--~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 50 DVDVIGLSS--LSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred CCCEEEEcc--cchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 566666654 45566777888888888864345666666653
No 449
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.91 E-value=82 Score=25.73 Aligned_cols=85 Identities=9% Similarity=-0.023 Sum_probs=44.8
Q ss_pred eEeeecccchhhhhh----chhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCcc
Q 031249 8 FFWSLLQAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 81 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~----~~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v 81 (163)
.+..+||||...... .+..+.. ..|.+++|.+++. ...++...+..+... -+--+|.||.|...
T Consensus 287 D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l----~i~glI~TKLDET~---- 356 (407)
T PRK12726 287 DHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEI----PIDGFIITKMDETT---- 356 (407)
T ss_pred CEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcC----CCCEEEEEcccCCC----
Confidence 334445999633222 1222222 3466677777642 233343333333211 23467799999633
Q ss_pred CHHHHHHHHHHcCCeEEEEcC
Q 031249 82 SKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa 102 (163)
..=.+..++...++|+..++.
T Consensus 357 ~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred CccHHHHHHHHHCCCEEEEec
Confidence 233455577778888766654
No 450
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.96 E-value=29 Score=22.47 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
+.|.+. ++.+....+..+..+++.+++....++++++.|.-
T Consensus 50 ~pdvV~--iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 50 DADAIG--LSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred CCCEEE--EeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 455444 45555566788888999998864225666666643
No 451
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=56.09 E-value=28 Score=23.36 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=55.4
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC---CCc---cCHHHHHHHHHHcCCe---
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH---RRA---VSKEEGEQFAKENGLL--- 96 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~---~~~---v~~~~~~~~~~~~~~~--- 96 (163)
+|-.++.++=++.+..-..+ ..++.+++-. --++|+|.|.+.=. ... --.+-+.+++.+.++.
T Consensus 25 qyp~~vRiIrv~CsGrvn~~-----fvl~Al~~Ga---DGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eR 96 (132)
T COG1908 25 QYPPNVRIIRVMCSGRVNPE-----FVLKALRKGA---DGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPER 96 (132)
T ss_pred cCCCceEEEEeeccCccCHH-----HHHHHHHcCC---CeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcce
Confidence 45556666666665432222 2345554433 35788888877410 000 0123456677788764
Q ss_pred --EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 031249 97 --FLEASARTAQNVEEAFIKTAAKILQN 122 (163)
Q Consensus 97 --~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (163)
++.+||..++.+.+.+++.++.+.+.
T Consensus 97 v~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 97 VRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred EEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 89999999999998888888877665
No 452
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=55.91 E-value=1e+02 Score=24.40 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=46.3
Q ss_pred CcEEEEEEECCChHHHHH---HHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEE---c---
Q 031249 31 AAGALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA---S--- 101 (163)
Q Consensus 31 ad~~i~v~d~~~~~s~~~---~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~---S--- 101 (163)
+|.+|+|. ..+..++.. +...++.+.+....-.-+-+|.||.|.. ..+..+++..+++++.. +
T Consensus 173 ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~-------~~ie~~ae~lgi~vLg~IP~D~~V 244 (329)
T cd02033 173 AQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT-------GEAQAFAAHAGIPILAAIPADEEL 244 (329)
T ss_pred CceEEEeC-CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc-------chHHHHHHHhCCCEEEECCCCHHH
Confidence 55555554 344555643 3444555554321112367889999852 13555666666653221 0
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHh
Q 031249 102 ----------ARTAQNVEEAFIKTAAKILQNIQ 124 (163)
Q Consensus 102 ----------a~~~~~i~~lf~~l~~~~~~~~~ 124 (163)
......+.+.|..+.+.+.+...
T Consensus 245 ~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 245 RRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred HHHHHcCCeecCCCCHHHHHHHHHHHHHHHhcC
Confidence 11223467788888888776443
No 453
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=54.68 E-value=94 Score=23.67 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=55.9
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC----CC---CccCHHHHHHHHHHcCCeEEEEcCC
Q 031249 31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA----HR---RAVSKEEGEQFAKENGLLFLEASAR 103 (163)
Q Consensus 31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~----~~---~~v~~~~~~~~~~~~~~~~~~~Sa~ 103 (163)
...+|++-|..+..+...+.+.++.+.+. ++++..|+-.-... .. .....+..+.+++..|-.++..
T Consensus 165 rk~iIllTDG~~~~~~~~~~~~~~~~~~~---~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~--- 238 (296)
T TIGR03436 165 RKALIVISDGGDNRSRDTLERAIDAAQRA---DVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV--- 238 (296)
T ss_pred CeEEEEEecCCCcchHHHHHHHHHHHHHc---CCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc---
Confidence 44577777776654444455555555443 47777776542110 00 0023567888999888876655
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 031249 104 TAQNVEEAFIKTAAKILQNIQE 125 (163)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~~~~~ 125 (163)
+..++.+.|..+.+.+..++.-
T Consensus 239 ~~~~l~~~f~~i~~~~~~~Y~l 260 (296)
T TIGR03436 239 NSNDLDGAFAQIAEELRSQYLI 260 (296)
T ss_pred cCccHHHHHHHHHHHHhheEEE
Confidence 5678999999999988766433
No 454
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.27 E-value=76 Score=24.76 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=37.5
Q ss_pred ceeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 5 QESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 5 ~~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
-.+.+||+...|.+.+....+.. + .+.-|+.|+++.+... ...+++.+.. + ++-++.|.
T Consensus 63 ~~~vl~Din~~~~~etv~~~~~~--g-~~~~y~cdis~~eei~---~~a~~Vk~e~--G-~V~ILVNN 121 (300)
T KOG1201|consen 63 AKLVLWDINKQGNEETVKEIRKI--G-EAKAYTCDISDREEIY---RLAKKVKKEV--G-DVDILVNN 121 (300)
T ss_pred CeEEEEeccccchHHHHHHHHhc--C-ceeEEEecCCCHHHHH---HHHHHHHHhc--C-CceEEEec
Confidence 36789998888887776655543 2 7788899999876444 4445555443 2 44444443
No 455
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=53.29 E-value=85 Score=24.84 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=25.1
Q ss_pred EEEeeCCCCCCCCccCHHHHHHHHHH-cC-C-eEEEEcCCCCCCHHHHHHH
Q 031249 67 MLVGNKCDLAHRRAVSKEEGEQFAKE-NG-L-LFLEASARTAQNVEEAFIK 114 (163)
Q Consensus 67 ilv~nK~D~~~~~~v~~~~~~~~~~~-~~-~-~~~~~Sa~~~~~i~~lf~~ 114 (163)
+|++||+|+.+..+ .+......+. .. . +++++. ........+|..
T Consensus 177 ~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 177 LVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred EEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 88899999865432 2344445544 33 2 455544 333555666553
No 456
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=53.21 E-value=20 Score=25.17 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=29.1
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
+...+..||++|++.-.-+..---.+..++..+....-.++|++++.+-
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 3445778999999986554332233444444442222246899888774
No 457
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=53.05 E-value=92 Score=23.12 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=34.5
Q ss_pred eEeeecccchhhhhhch-hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEE-EEeeCC
Q 031249 8 FFWSLLQAGQESFRSIT-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIM-LVGNKC 73 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~i-lv~nK~ 73 (163)
-+..+||+|......+. .....-+|.+|++...+ ..++..+..+++.+.+... .+.++. ++.|+.
T Consensus 118 D~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 118 DFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred CEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 34444587754322322 22233599999999865 4566666655555543321 234554 445653
No 458
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=52.86 E-value=32 Score=23.17 Aligned_cols=40 Identities=13% Similarity=0.371 Sum_probs=30.1
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEE
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIML 68 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~il 68 (163)
..-||.||.+-++...+-..+..|+..+.+-++ ..+|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 356888998888776667778899999988554 3577664
No 459
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.81 E-value=1.3e+02 Score=24.63 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=56.9
Q ss_pred eeeEeeecccchhhhhh----chhhhc--cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 6 ESFFWSLLQAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~----~~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
.+.+.| |+|...... ....+. ...+-.++|.|++.. .+++.+++..+... -+-=+|.||.|...
T Consensus 271 d~VLID--TaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 271 HMVLID--TVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAA-- 340 (420)
T ss_pred CEEEec--CCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCC--
Confidence 445555 999544222 122222 224567888888743 23333444444321 23356799999633
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHHHHhh
Q 031249 80 AVSKEEGEQFAKENGLLFLEASARTAQNV-EEAFIKTAAKILQNIQE 125 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf~~l~~~~~~~~~~ 125 (163)
..=.+..++...++++..++. |.+| +++...-...+.++.-.
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt~--Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVTN--GQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEEC--CCCchhhhhhCCHHHHHHHHhc
Confidence 233455677778888766654 4555 55554444444444443
No 460
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=51.10 E-value=90 Score=22.67 Aligned_cols=67 Identities=12% Similarity=-0.068 Sum_probs=40.8
Q ss_pred eeEeeecccchhh-hhhchhhhccC--CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 031249 7 SFFWSLLQAGQES-FRSITRSYYRG--AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 76 (163)
Q Consensus 7 ~~l~d~Dt~G~e~-~~~~~~~~~~~--ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~ 76 (163)
+-+..+|||.... ...+....+.+ +|.+++|...+ ..+...+...++.+..... ...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~~--~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYGI--PVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCCC--CCCEEEEeCCcCc
Confidence 3344455775322 23333444444 58999999866 5667777777888876541 2346788988753
No 461
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=50.99 E-value=46 Score=25.14 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred EECCChHHHHHHHHHHHH--HHHhcCCC-CeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 031249 38 YDITRRETFNHLSSWLED--ARQHANPN-MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 114 (163)
Q Consensus 38 ~d~~~~~s~~~~~~~~~~--l~~~~~~~-~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~ 114 (163)
++..|...|..+..|++. |+.+...+ -+ +..++ ... =.+...++++..++++ ....-.++++|
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~----LR~i~---s~~-W~~~~~kYl~dl~cP~------~~~~~~~~ldW 82 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKIRHYKIEDREK----LRNID---SSD-WPKAFEKYLKDLGCPF------SSESRQEQLDW 82 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhhccCCHhhHHH----HhcCC---cch-HHHHHHHHHHhcCCCC------cchhHHHHHHH
Confidence 467889999999999999 55443111 01 00011 011 2345667888889887 55567999999
Q ss_pred HHHHHHHHHhhccc
Q 031249 115 TAAKILQNIQEGAL 128 (163)
Q Consensus 115 l~~~~~~~~~~~~~ 128 (163)
|+...+....+...
T Consensus 83 LL~~AV~leY~Dn~ 96 (249)
T PF10036_consen 83 LLGLAVRLEYKDNA 96 (249)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998887775
No 462
>PRK11670 antiporter inner membrane protein; Provisional
Probab=50.71 E-value=1.3e+02 Score=24.12 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCC
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDL 75 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D~ 75 (163)
.+|++|+|...... ++.++...++.+.+ .+.|++ +|.|+.+.
T Consensus 239 aad~viiV~tp~~~-s~~da~~~i~~~~~---~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 239 PVTGAVVVTTPQDI-ALIDAKKGIVMFEK---VEVPVLGIVENMSMH 281 (369)
T ss_pred cCCeEEEEecCchh-HHHHHHHHHHHHhc---cCCCeEEEEEcCCcc
Confidence 57999999876543 34444444444332 346654 77898774
No 463
>PRK13660 hypothetical protein; Provisional
Probab=50.70 E-value=92 Score=22.40 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=7.8
Q ss_pred ccCCcEEEEEEECCC
Q 031249 28 YRGAAGALLVYDITR 42 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~ 42 (163)
+.++|++|++||...
T Consensus 127 v~~sd~~i~~YD~e~ 141 (182)
T PRK13660 127 LEHTDGALLVYDEEN 141 (182)
T ss_pred HHccCeEEEEEcCCC
Confidence 345555555555443
No 464
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=50.65 E-value=73 Score=21.22 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=22.0
Q ss_pred HHHHHHcCCe-----EEEEcCCCCCCHHHHHHHHHHHHHH
Q 031249 87 EQFAKENGLL-----FLEASARTAQNVEEAFIKTAAKILQ 121 (163)
Q Consensus 87 ~~~~~~~~~~-----~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (163)
++++.+.|+. +..+|+-.+..+.+.++++.+.+.+
T Consensus 83 k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 83 KKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred HHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 3344444543 6677777777777777777666543
No 465
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=50.37 E-value=63 Score=20.38 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.4
Q ss_pred chhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 23 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 23 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
+...-+++|.++++-+.....-++.++....+.+++...++.-+ ++|...|
T Consensus 28 Ll~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~i-i~G~~id 78 (95)
T PF12327_consen 28 LLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANI-IWGASID 78 (95)
T ss_dssp TSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEE-EEEEEE-
T ss_pred cccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceE-EEEEEEC
Confidence 55567889999999998877788999999999998887655554 4555555
No 466
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=49.62 E-value=1.1e+02 Score=22.97 Aligned_cols=64 Identities=11% Similarity=-0.055 Sum_probs=32.5
Q ss_pred eEeeecccchhhhhhc-hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEE-EEeeC
Q 031249 8 FFWSLLQAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIM-LVGNK 72 (163)
Q Consensus 8 ~l~d~Dt~G~e~~~~~-~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~i-lv~nK 72 (163)
-+..+||+|..-...+ ......-+|.+|+++..+ ..++..+..+++.+.+.. ..+.++. ++.|+
T Consensus 117 D~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 117 DFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred CEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 3444457764332222 122234689999999755 456666655555443321 1234443 44554
No 467
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=48.14 E-value=36 Score=22.63 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEc
Q 031249 52 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 52 ~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~S 101 (163)
..+.+.+. +.|++++|.-.... -..++..++++..+++++..-
T Consensus 4 ~~~~L~~A---~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~ 46 (137)
T PF00205_consen 4 AADLLSSA---KRPVILAGRGARRS----GAAEELRELAEKLGIPVATTP 46 (137)
T ss_dssp HHHHHHH----SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEG
T ss_pred HHHHHHhC---CCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecC
Confidence 34445554 38999998776532 257889999999999987664
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.79 E-value=1.7e+02 Score=24.50 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=42.3
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 031249 34 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV-EEAF 112 (163)
Q Consensus 34 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf 112 (163)
.++|.|.+... ..+.+.+..+... ..--+|+||.|... ..-.+..+....++++..++. |++| +++-
T Consensus 368 ~~LVLdAt~~~--~~l~~i~~~f~~~----~~~g~IlTKlDet~----~~G~~l~i~~~~~lPI~yvt~--GQ~VPeDL~ 435 (484)
T PRK06995 368 RLLLLNATSHG--DTLNEVVQAYRGP----GLAGCILTKLDEAA----SLGGALDVVIRYKLPLHYVSN--GQRVPEDLH 435 (484)
T ss_pred eEEEEeCCCcH--HHHHHHHHHhccC----CCCEEEEeCCCCcc----cchHHHHHHHHHCCCeEEEec--CCCChhhhc
Confidence 67888876432 3333333333221 23456789999632 334556677788888766654 4556 5544
Q ss_pred HHHHHHHHHH
Q 031249 113 IKTAAKILQN 122 (163)
Q Consensus 113 ~~l~~~~~~~ 122 (163)
..-...+.++
T Consensus 436 ~a~~~~lv~~ 445 (484)
T PRK06995 436 LANKKFLLHR 445 (484)
T ss_pred cCCHHHHHHH
Confidence 3333333333
No 469
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=46.14 E-value=57 Score=20.22 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=28.5
Q ss_pred cchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 031249 15 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVG 70 (163)
Q Consensus 15 ~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~ 70 (163)
+..+.+...+...+++++.+|++++.....+- .....+....+ .++|++.+.
T Consensus 34 ~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~-~~~~E~~~a~~---~~~~iipv~ 85 (102)
T PF13676_consen 34 PPGEDWREEIERAIERSDCVIVLLSPNYLKSP-WCRFELGAAWK---RGKPIIPVR 85 (102)
T ss_dssp -TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTH-HHHHHHHHHHC---TSESEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCEEEEEECcccccCh-HHHHHHHHHHH---CCCEEEEEE
Confidence 33445556667777899999999985433332 22222333322 345666665
No 470
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=46.13 E-value=96 Score=21.33 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=23.7
Q ss_pred eeeEeeecccc-----------------hhhhhhchhhhccCCcEEEEEEECCC
Q 031249 6 ESFFWSLLQAG-----------------QESFRSITRSYYRGAAGALLVYDITR 42 (163)
Q Consensus 6 ~~~l~d~Dt~G-----------------~e~~~~~~~~~~~~ad~~i~v~d~~~ 42 (163)
.++++-+||+| .|+|.-..-.--++||++|+.=-++.
T Consensus 8 S~~v~~VdsG~CNgCdIEi~a~~sP~YDaErfgI~~v~sPRhADiLlVTG~vT~ 61 (148)
T COG3260 8 SLHVYHVDSGGCNGCDIEILAALSPRYDAERFGIKVVNSPRHADILLVTGAVTR 61 (148)
T ss_pred ceEEEEeccCCcCceeEEEeeccCcccchHHheeEEeCCCccccEEEEeccccH
Confidence 45666666766 34554444445578999888877663
No 471
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=45.84 E-value=55 Score=22.79 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=29.3
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
...+|.+|+-|- .+-..+..++..+....+++.+++|||-|..-
T Consensus 67 ~~~~D~vvly~P----KaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 67 DQDFDTVVLYWP----KAKAEAQYLLANLLSHLPPGTEIFVVGENKGG 110 (155)
T ss_dssp HTT-SEEEEE------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGT
T ss_pred ccCCCEEEEEcc----CcHHHHHHHHHHHHHhCCCCCEEEEEecCccc
Confidence 356899988884 34456667788888777778999999987654
No 472
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=45.23 E-value=39 Score=22.73 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=41.2
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHH---HhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR---QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~---~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
+...+..||++|++.-.-...---.+..++..+. .....++|+.++++=-.... ..........+...++..+
T Consensus 64 ~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g-~~~~~~~l~~~~~~~~~~~ 139 (152)
T PF03358_consen 64 LYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRG-GLRALEQLRQILDYLGMIV 139 (152)
T ss_dssp HHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSST-THHHHHHHHHHHHHTTBEE
T ss_pred HHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcH-HHHHHHHHHHHHHHCCCEE
Confidence 3456789999999987655332233344444443 22225688888865433211 2234556666666777653
No 473
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.03 E-value=1.8e+02 Score=24.08 Aligned_cols=62 Identities=19% Similarity=0.027 Sum_probs=36.2
Q ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcC
Q 031249 31 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 102 (163)
Q Consensus 31 ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 102 (163)
-.-.+||.|++... .++...+...... -+-=+|.||.|... ..=.+..++...++|+..++.
T Consensus 333 ~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~----~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 333 SVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD----FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC----CccHHHHHHHHHCCCEEEEec
Confidence 34678899987652 3333444444221 23467799999633 123355566777888666654
No 474
>PRK14725 pyruvate kinase; Provisional
Probab=44.77 E-value=2.1e+02 Score=24.82 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=58.6
Q ss_pred CcEEEEEE-ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEeeCCC-CCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 031249 31 AAGALLVY-DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD-LAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 107 (163)
Q Consensus 31 ad~~i~v~-d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~nK~D-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (163)
.|++++.= |+.-+-.|+.+..+-+++..... ..+|+|+.-.-.| +.+...-+..|+...+..-+...++.| .|.-
T Consensus 501 ~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAvgaD~VMLS--~G~y 578 (608)
T PRK14725 501 RFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMALRAECVMLN--KGPH 578 (608)
T ss_pred CcEEEEECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhhcCCEEeec--CCCC
Confidence 47766553 45555567776666666544433 4688665533333 222333456777777776688899999 7888
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 031249 108 VEEAFIKTAAKILQNIQEG 126 (163)
Q Consensus 108 i~~lf~~l~~~~~~~~~~~ 126 (163)
.-+...++.+.+.+....+
T Consensus 579 PveAV~~l~~I~~r~e~~~ 597 (608)
T PRK14725 579 IVEAVRVLDDILRRMEEHQ 597 (608)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888876666655444
No 475
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=44.54 E-value=46 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHH
Q 031249 95 LLFLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
+|++..||.++.||..+++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 4677779999999999999987654
No 476
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.52 E-value=2.2e+02 Score=25.53 Aligned_cols=86 Identities=16% Similarity=0.075 Sum_probs=46.3
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH-
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV- 108 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i- 108 (163)
.-+-.++|.|++.. .+++.+.++.+......+ +-=+|+||.|... ..=.+..+....++++..++. |++|
T Consensus 293 ~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~----~~G~iL~i~~~~~lPI~yit~--GQ~VP 363 (767)
T PRK14723 293 RPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEAT----HLGPALDTVIRHRLPVHYVST--GQKVP 363 (767)
T ss_pred CCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCC----CccHHHHHHHHHCCCeEEEec--CCCCh
Confidence 35567899988743 233333444443321111 2356799999643 223345567777888766654 5556
Q ss_pred HHHHHHHHHHHHHHHh
Q 031249 109 EEAFIKTAAKILQNIQ 124 (163)
Q Consensus 109 ~~lf~~l~~~~~~~~~ 124 (163)
+++...--..+.+..-
T Consensus 364 dDL~~a~~~~lv~~ll 379 (767)
T PRK14723 364 EHLELAQADELVDRAF 379 (767)
T ss_pred hhcccCCHHHHHHHHh
Confidence 5554444444444433
No 477
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.31 E-value=71 Score=28.07 Aligned_cols=63 Identities=16% Similarity=-0.040 Sum_probs=40.0
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
+..+|||+...... .......+|++|+|... +..+...+...++.+.... ....-+|.|+.|.
T Consensus 658 ~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~~--~~~~GvvlN~~~~ 720 (754)
T TIGR01005 658 CVVVDVGTADPVRD-MRAAARLAIIMLLVTAY-DRVVVECGRADAQGISRLN--GEVTGVFLNMLDP 720 (754)
T ss_pred EEEEcCCCcchhHH-HHHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhcC--CceEEEEecCCCh
Confidence 34445777543222 23445678999999875 4556667777777776543 2344688999985
No 478
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=44.16 E-value=52 Score=27.54 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=49.0
Q ss_pred eeeEeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 031249 6 ESFFWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 74 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 74 (163)
.-.++|+ +.|.++.-.+.+..|++++.+|| =..+.--+...++.++..+++....++.+|++-.|.+
T Consensus 135 ~~~V~dL-sVG~qQRVEIlKaLyr~a~iLIL-DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 135 DAKVADL-SVGEQQRVEILKALYRGARLLIL-DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred cceeecC-CcchhHHHHHHHHHhcCCCEEEE-cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 3457777 77888888899999999997765 1245555667777777777666656788888877755
No 479
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=43.94 E-value=26 Score=24.53 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=36.1
Q ss_pred hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCH-HHHHHHHHHcCC
Q 031249 24 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-EEGEQFAKENGL 95 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~-~~~~~~~~~~~~ 95 (163)
+...+..||++||+.-.-+..---.+..|+..+......++|+.++.+--.. . ..... ...+.+....+.
T Consensus 59 l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v~~~~~gg~~-~-~~~~~~~~l~~~l~~l~~ 129 (171)
T TIGR03567 59 ATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVVLPIATGGSI-A-HLLAIDYALKPVLSALGA 129 (171)
T ss_pred HHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEEEEEEcCCch-h-HHHHHHHHHHHHHHHcCC
Confidence 3445678999999986544322223334444442222246788888765322 1 11111 234556666665
No 480
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=43.55 E-value=92 Score=20.37 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=19.5
Q ss_pred cchhhhhhchhhhccCCcEEEEEEECCChHHH
Q 031249 15 AGQESFRSITRSYYRGAAGALLVYDITRRETF 46 (163)
Q Consensus 15 ~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~ 46 (163)
+|..... .+...+..++.+|+|++.+...|-
T Consensus 40 ~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~ 70 (140)
T smart00255 40 PGGGDLE-EIDEAIEKSRIAIVVLSPNYAESE 70 (140)
T ss_pred cccchHH-HHHHHHHHCcEEEEEECcccccCh
Confidence 3433333 556667778888888887655443
No 481
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=43.30 E-value=80 Score=20.68 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=36.2
Q ss_pred hccCCcEEEEEEECCChH-HH-HHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeE
Q 031249 27 YYRGAAGALLVYDITRRE-TF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLF 97 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~-s~-~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~ 97 (163)
.+..+|.+||........ .- ..+..++..+......++++.++++- +...+-.-.......++...|..+
T Consensus 42 ~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~-g~~~~f~~~~~~~~~~l~~~g~~~ 113 (140)
T TIGR01753 42 DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSG-DWGYEFCEAVDDWEERLKEAGATI 113 (140)
T ss_pred HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecC-CCCchhhHHHHHHHHHHHHCCCEE
Confidence 345678888887653311 11 34455666655433356777777764 221100112344555666666653
No 482
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=42.55 E-value=30 Score=26.77 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=33.6
Q ss_pred CCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHH
Q 031249 63 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKI 119 (163)
Q Consensus 63 ~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~lf~~l~~~~ 119 (163)
-+|++.+.||+|...-.+++ -.+.++ .+++||-.+=|++++++.+-..+
T Consensus 231 yVp~iyvLNkIdsISiEELd--------ii~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSISIEELD--------IIYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eeeeeeeecccceeeeeccc--------eeeeccceeecccccccchHHHHHHHhhcc
Confidence 37999999999963322221 112333 78899999999988888776544
No 483
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=42.05 E-value=99 Score=23.21 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=20.0
Q ss_pred hhhccCCcEEEEEEECCChHHHHHHHHHHHHHHH
Q 031249 25 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ 58 (163)
Q Consensus 25 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~ 58 (163)
..+...+|++|+|.... ..+..++...++.+.+
T Consensus 230 ~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 230 QIVATRARGTLIVSRVN-ETRLHELTSLKEHLSG 262 (274)
T ss_pred HHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHh
Confidence 33456778888777654 2445556666666654
No 484
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=41.63 E-value=80 Score=24.68 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=35.0
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
....++|++++-+.-+.. ..+.++..+.....++..++++|.|-|.
T Consensus 33 ~~~~~~d~~l~~~pK~~~----e~e~qLa~ll~~~~~g~~i~v~g~~~~g 78 (300)
T COG2813 33 DAPDDFDAVLLYWPKHKA----EAEFQLAQLLARLPPGGEIVVVGEKRDG 78 (300)
T ss_pred cccCCCCEEEEEccCchH----HHHHHHHHHHhhCCCCCeEEEEecccch
Confidence 344578999998875544 5566777777777788999999998886
No 485
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=41.57 E-value=33 Score=24.68 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=27.9
Q ss_pred hhhhccCCcEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeC
Q 031249 24 TRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNK 72 (163)
Q Consensus 24 ~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK 72 (163)
+...++.||++||+.-.-+ +-.++.+..|+ ....-.++|+.++++-
T Consensus 60 ~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l---~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 60 FTEQLAQADGLIVATPVYKASFSGALKTLLDLL---PERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHHHCCEEEEECCccCCCCCHHHHHHHHhC---ChhhhCCCEEEEEEec
Confidence 4456778999999986544 22334333333 2212246799988885
No 486
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=40.79 E-value=2e+02 Score=23.54 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=50.1
Q ss_pred eeeEeeecccchhhhhhc----hhhhcc--CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 6 ESFFWSLLQAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~~----~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
.+.|.| |+|.-.++.+ ...++. ...-+.||++++.. .+++...++.+.... .--++.||.|...
T Consensus 283 d~ILVD--TaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET~-- 352 (407)
T COG1419 283 DVILVD--TAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDETT-- 352 (407)
T ss_pred CEEEEe--CCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEcccccC--
Confidence 445555 9996555442 333333 23456677777754 567777777775432 2256799999632
Q ss_pred ccCHHHHHHHHHHcCCeEEEEc
Q 031249 80 AVSKEEGEQFAKENGLLFLEAS 101 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~S 101 (163)
..=....+..+.++|+-.++
T Consensus 353 --s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 --SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred --chhHHHHHHHHhCCCeEEEe
Confidence 34455566777787755544
No 487
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=40.66 E-value=80 Score=24.08 Aligned_cols=96 Identities=8% Similarity=0.110 Sum_probs=58.2
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 108 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (163)
..+..+|+.=|++.. .+..|+..+-+. .++|.+++.+|.+|.. ++..-...++-+.-. +..-
T Consensus 147 kKAkLVIIA~DVsPi----e~vk~LpaLCrk--~~VPY~iVktKaeLG~-----------AIGkKtravVAItD~-g~ed 208 (263)
T PTZ00222 147 KQARMVVIANNVDPV----ELVLWMPNLCRA--NKIPYAIVKDMARLGD-----------AIGRKTATCVAITDV-NAED 208 (263)
T ss_pred CCceEEEEeCCCCHH----HHHHHHHHHHHh--cCCCEEEECCHHHHHH-----------HHCCCCCeEEEEeeC-Cccc
Confidence 346666666666543 333455555443 3589999998877621 111111223333332 3344
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCceeccC
Q 031249 109 EEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYG 142 (163)
Q Consensus 109 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
..-|..|++.+..+.++...+.+.+=.|-.+|.-
T Consensus 209 ~~~l~~lv~~~~~~~nd~~~e~rr~wGGg~~g~k 242 (263)
T PTZ00222 209 EAALKNLIRSVNARFLSRSDVIRRQWGGLQLSLR 242 (263)
T ss_pred HHHHHHHHHHHHHhhccchHHHHhhccCCccCHH
Confidence 7889999999999998888777776666666543
No 488
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=40.56 E-value=48 Score=26.49 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=22.5
Q ss_pred ccCCcEEEEEEECCChHHHHHHHHHHHHHHH
Q 031249 28 YRGAAGALLVYDITRRETFNHLSSWLEDARQ 58 (163)
Q Consensus 28 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~ 58 (163)
...+...+.|||++...+.+++..-+++-..
T Consensus 356 as~at~~l~VYditkG~tv~eAl~~fd~~~~ 386 (442)
T PF15416_consen 356 ASKATPTLEVYDITKGETVKEALEKFDEGDN 386 (442)
T ss_pred cccCcceEEEEEccCCccHHHHHHhhccccc
Confidence 3467788999999999888876555554433
No 489
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=40.46 E-value=1.6e+02 Score=22.15 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=30.7
Q ss_pred cCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEeeCCC
Q 031249 29 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCD 74 (163)
Q Consensus 29 ~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-lv~nK~D 74 (163)
..||.+|++... +..++..+...++.+.....++.++. ++.|+.+
T Consensus 140 ~aad~vlip~~p-~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 140 GKAKEIYIVASG-ELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cccceEEEecCc-hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 478999999874 46677777677777765433455553 7778765
No 490
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=40.02 E-value=1e+02 Score=22.04 Aligned_cols=44 Identities=18% Similarity=0.444 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 43 RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 43 ~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
++.-..+..|+.+++... ..++|+-|+. +..+..++..++++|+
T Consensus 45 ~~~tpe~~~W~~e~k~~g---i~v~vvSNn~---------e~RV~~~~~~l~v~fi 88 (175)
T COG2179 45 PDATPELRAWLAELKEAG---IKVVVVSNNK---------ESRVARAAEKLGVPFI 88 (175)
T ss_pred CCCCHHHHHHHHHHHhcC---CEEEEEeCCC---------HHHHHhhhhhcCCcee
Confidence 344566788999998753 6777777743 2344455566666654
No 491
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=39.86 E-value=1.9e+02 Score=23.30 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=34.8
Q ss_pred EeeecccchhhhhhchhhhccCCcEEEEEEECCChHHHHHHHHH---HHHHHHhc---CCCCeEEEEeeCCCC
Q 031249 9 FWSLLQAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA---NPNMSIMLVGNKCDL 75 (163)
Q Consensus 9 l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~---~~~l~~~~---~~~~p~ilv~nK~D~ 75 (163)
+..+|||+.- ..+....+.-||.+|+.+... ..++..+..+ +..+.... ..+..+-++.|+.|.
T Consensus 237 ~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 237 VIVIDSAPNL--GIGTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred EEEEECCCch--hHHHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 3444588653 334455666889999988654 4444444433 33333211 111234467999885
No 492
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.37 E-value=1.1e+02 Score=25.42 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=22.3
Q ss_pred eeeEeeecccchhhhhh-chhh-----hccCCcEEEEEEECCChH
Q 031249 6 ESFFWSLLQAGQESFRS-ITRS-----YYRGAAGALLVYDITRRE 44 (163)
Q Consensus 6 ~~~l~d~Dt~G~e~~~~-~~~~-----~~~~ad~~i~v~d~~~~~ 44 (163)
.+.|.| |||....+. |... -.-+-|-++||.|+.-.+
T Consensus 184 DvvIvD--TAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 184 DVVIVD--TAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred CEEEEe--CCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 344555 999654433 2111 233678899999987654
No 493
>PRK06242 flavodoxin; Provisional
Probab=37.80 E-value=1.2e+02 Score=20.20 Aligned_cols=67 Identities=9% Similarity=-0.043 Sum_probs=40.9
Q ss_pred hccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCeEE
Q 031249 27 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 98 (163)
Q Consensus 27 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~ 98 (163)
.+.++|.+||....-...-...+..++..+... .++++++++|--- ..... .......+...|+.++
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~--~~k~~~~f~t~g~-~~~~~--~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV--SGKKAFIFSTSGL-PFLKY--HKALKKKLKEKGFEIV 106 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh--cCCeEEEEECCCC-CcchH--HHHHHHHHHHCCCEEE
Confidence 456889999988654433334455566655332 4588999988533 22111 4666677777887753
No 494
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=37.66 E-value=1.1e+02 Score=19.57 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=25.7
Q ss_pred hhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 031249 26 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 75 (163)
Q Consensus 26 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~ 75 (163)
..++.||++|..++....++ ...++.-.... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~----Gt~~ElG~A~a-lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDS----GTAFELGYAYA-LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--H----HHHHHHHHHHH-TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCC----cHHHHHHHHHH-CCCEEEEEEcCCcc
Confidence 46778999999998744221 11122222222 35898888776553
No 495
>PRK10037 cell division protein; Provisional
Probab=37.56 E-value=1.5e+02 Score=21.94 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=23.6
Q ss_pred eeEeeecccchhhhhhchhhhccCCcEEEEEEECC
Q 031249 7 SFFWSLLQAGQESFRSITRSYYRGAAGALLVYDIT 41 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~~~~~~~~~ad~~i~v~d~~ 41 (163)
+-+..+|||+.. ..+....+..||.+|+++..+
T Consensus 118 yD~iiIDtpp~~--~~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 118 YQWILLDLPRGA--SPLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCEEEEECCCCc--cHHHHHHHHhCCEEEEEcCcC
Confidence 344455588763 345667888999999999875
No 496
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=37.52 E-value=71 Score=25.51 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=36.6
Q ss_pred cCCcEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCC
Q 031249 29 RGAAGALLVYDITR--RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 77 (163)
Q Consensus 29 ~~ad~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~ 77 (163)
.++|.+|+.=|+=| ..+.+++....+.+++....++|++++.-..|...
T Consensus 39 ~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 39 EKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred ccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 46799999877643 44667777788888777767899999977777543
No 497
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=37.15 E-value=90 Score=18.40 Aligned_cols=59 Identities=10% Similarity=-0.133 Sum_probs=29.6
Q ss_pred ecccchhhhhhc-hhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEee
Q 031249 12 LLQAGQESFRSI-TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGN 71 (163)
Q Consensus 12 ~Dt~G~e~~~~~-~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ilv~n 71 (163)
+|++|......+ .......+|.++++.+... .+........++...... ...+..++.|
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 346764332221 2456678899999998664 334444333322222221 3345555544
No 498
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.57 E-value=2.4e+02 Score=22.88 Aligned_cols=104 Identities=10% Similarity=-0.047 Sum_probs=54.3
Q ss_pred eeEeeecccchhhhhh----chhhhccC---CcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCC
Q 031249 7 SFFWSLLQAGQESFRS----ITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 79 (163)
Q Consensus 7 ~~l~d~Dt~G~e~~~~----~~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~ 79 (163)
..+..+||+|.-.... -...++.. -+-.++|.|++.. ..++...+...... -+-=+|.||.|...
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence 3445556999533221 11222221 2258899998765 33444444444321 13467799999633
Q ss_pred ccCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHHH
Q 031249 80 AVSKEEGEQFAKENGLLFLEASARTAQNV-EEAFIKTAAKILQN 122 (163)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf~~l~~~~~~~ 122 (163)
..=.+..++...++|+..++. |++| +++...-...+.+.
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit~--Gq~vPeDl~~~~~~~~~~~ 366 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVTD--GQIVPHNISIAEPLTFIKK 366 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHHH
Confidence 233445566777888665554 4555 44443333333333
No 499
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=35.37 E-value=62 Score=21.84 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=39.6
Q ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCCCCccCHHHHHHHHHHcCCe-EEEEcCCCCCCH
Q 031249 30 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNV 108 (163)
Q Consensus 30 ~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 108 (163)
++|++ ..+.-...+...+...++.+++....++|+++.|+=. .++ -..++....++..|+. +|.-.+ ..
T Consensus 50 ~adiV--glS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~-i~~---~d~~~~~~~L~~~Gv~~vf~pgt----~~ 119 (128)
T cd02072 50 DADAI--LVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV-VGK---QDFEDVEKRFKEMGFDRVFAPGT----PP 119 (128)
T ss_pred CCCEE--EEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC-CCh---hhhHHHHHHHHHcCCCEEECcCC----CH
Confidence 45544 4455445566777778888877654456666555422 111 1123334456677876 443222 45
Q ss_pred HHHHHHH
Q 031249 109 EEAFIKT 115 (163)
Q Consensus 109 ~~lf~~l 115 (163)
.++...|
T Consensus 120 ~~i~~~l 126 (128)
T cd02072 120 EEAIADL 126 (128)
T ss_pred HHHHHHH
Confidence 5554443
No 500
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=35.23 E-value=1.1e+02 Score=18.98 Aligned_cols=43 Identities=7% Similarity=0.228 Sum_probs=19.4
Q ss_pred hhchhhhccCCcEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 031249 21 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV 69 (163)
Q Consensus 21 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ilv 69 (163)
....+..++..|++||+...- -.-+.+..+.+.+..+.+++++
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~G------ivvR~iap~l~dK~~DPaVvvv 44 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAG------IVVRAIAPLLKDKDTDPAVVVV 44 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HH------HHHHHHHHH---TTT--EEEEE
T ss_pred hhHHHHHHcCCCeEEEEeCcH------HHHHHhChhhcccCCCCCEEEE
Confidence 345667788889999998632 2333333343334344455544
Done!